Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006255.01.T01 | XP_024629103.1 | 89.355 | 310 | 21 | 6 | 1 | 304 | 1 | 304 | 6.42E-147 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006255.01.T01 | Q8H102 | 39.45 | 327 | 121 | 12 | 27 | 303 | 22 | 321 | 2.80E-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006255.01.T01 | G7IB14 | 89.320 | 309 | 21 | 6 | 1 | 303 | 1 | 303 | 7.28e-146 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180006255.01 | MsG0280008715.01 | -0.824325 | 8.581705e-54 | 7.576423e-51 |
| MsG0180006255.01 | MsG0280008717.01 | -0.806101 | 9.688564e-50 | 5.213635e-47 |
| MsG0180006255.01 | MsG0380015520.01 | 0.821369 | 4.189018e-53 | 3.401409e-50 |
| MsG0180006255.01 | MsG0380017053.01 | 0.834449 | 2.977494e-56 | 3.534844e-53 |
| MsG0180006255.01 | MsG0480018569.01 | 0.814502 | 1.491104e-51 | 1.002307e-48 |
| MsG0180006255.01 | MsG0480023327.01 | 0.800353 | 1.499638e-48 | 6.967850e-46 |
| MsG0180006255.01 | MsG0580025558.01 | 0.839111 | 1.926436e-57 | 2.633684e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006255.01.T01 | MTR_1g116790 | 89.320 | 309 | 21 | 6 | 1 | 303 | 1 | 303 | 1.85e-149 | 423 |
| MsG0180006255.01.T01 | MTR_8g036235 | 32.000 | 350 | 154 | 11 | 16 | 304 | 29 | 355 | 9.89e-29 | 114 |
| MsG0180006255.01.T01 | MTR_8g036235 | 32.102 | 352 | 149 | 12 | 16 | 303 | 29 | 354 | 9.29e-28 | 111 |
| MsG0180006255.01.T01 | MTR_1g052470 | 37.778 | 225 | 109 | 8 | 96 | 303 | 126 | 336 | 3.54e-26 | 107 |
| MsG0180006255.01.T01 | MTR_2g098310 | 62.338 | 77 | 24 | 2 | 231 | 304 | 297 | 371 | 4.61e-23 | 98.6 |
| MsG0180006255.01.T01 | MTR_4g033295 | 72.414 | 58 | 16 | 0 | 247 | 304 | 100 | 157 | 4.65e-23 | 94.4 |
| MsG0180006255.01.T01 | MTR_4g065870 | 65.714 | 70 | 23 | 1 | 236 | 304 | 325 | 394 | 7.22e-23 | 98.2 |
| MsG0180006255.01.T01 | MTR_3g027650 | 37.500 | 224 | 96 | 9 | 97 | 304 | 166 | 361 | 1.21e-22 | 96.7 |
| MsG0180006255.01.T01 | MTR_4g033295 | 71.930 | 57 | 16 | 0 | 247 | 303 | 100 | 156 | 1.49e-22 | 92.8 |
| MsG0180006255.01.T01 | MTR_2g098310 | 63.636 | 77 | 23 | 2 | 231 | 304 | 297 | 371 | 1.51e-22 | 97.4 |
| MsG0180006255.01.T01 | MTR_2g098310 | 63.158 | 76 | 23 | 2 | 231 | 303 | 297 | 370 | 1.63e-22 | 97.1 |
| MsG0180006255.01.T01 | MTR_4g065870 | 65.217 | 69 | 23 | 1 | 236 | 303 | 325 | 393 | 3.00e-22 | 96.3 |
| MsG0180006255.01.T01 | MTR_2g098310 | 63.158 | 76 | 23 | 2 | 231 | 303 | 297 | 370 | 4.09e-22 | 95.9 |
| MsG0180006255.01.T01 | MTR_4g065870 | 65.217 | 69 | 23 | 1 | 236 | 303 | 325 | 393 | 4.12e-22 | 95.9 |
| MsG0180006255.01.T01 | MTR_4g033295 | 71.930 | 57 | 16 | 0 | 247 | 303 | 100 | 156 | 5.30e-22 | 91.7 |
| MsG0180006255.01.T01 | MTR_3g027650 | 37.220 | 223 | 96 | 9 | 97 | 303 | 166 | 360 | 1.06e-21 | 94.7 |
| MsG0180006255.01.T01 | MTR_3g028520 | 37.220 | 223 | 96 | 9 | 97 | 303 | 166 | 360 | 1.43e-21 | 94.4 |
| MsG0180006255.01.T01 | MTR_3g027650 | 37.220 | 223 | 96 | 9 | 97 | 303 | 166 | 360 | 1.43e-21 | 94.4 |
| MsG0180006255.01.T01 | MTR_7g092540 | 52.326 | 86 | 36 | 3 | 221 | 303 | 198 | 281 | 7.34e-18 | 82.4 |
| MsG0180006255.01.T01 | MTR_7g092540 | 52.326 | 86 | 36 | 3 | 221 | 303 | 198 | 281 | 1.35e-17 | 82.0 |
| MsG0180006255.01.T01 | MTR_1g052470 | 34.673 | 199 | 107 | 7 | 96 | 281 | 126 | 314 | 1.69e-14 | 73.2 |
| MsG0180006255.01.T01 | MTR_6g052280 | 49.315 | 73 | 34 | 2 | 233 | 303 | 21 | 92 | 2.19e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006255.01.T01 | AT1G05805 | 39.450 | 327 | 121 | 12 | 27 | 303 | 22 | 321 | 2.85e-46 | 160 |
| MsG0180006255.01.T01 | AT2G43140 | 46.087 | 230 | 74 | 9 | 93 | 303 | 71 | 269 | 6.45e-40 | 142 |
| MsG0180006255.01.T01 | AT2G43140 | 51.462 | 171 | 53 | 6 | 140 | 303 | 25 | 172 | 1.50e-37 | 133 |
| MsG0180006255.01.T01 | AT1G35460 | 59.740 | 77 | 23 | 2 | 236 | 304 | 144 | 220 | 9.28e-24 | 97.4 |
| MsG0180006255.01.T01 | AT1G35460 | 59.211 | 76 | 23 | 2 | 236 | 303 | 144 | 219 | 1.60e-22 | 94.7 |
| MsG0180006255.01.T01 | AT1G51140 | 64.179 | 67 | 20 | 1 | 236 | 302 | 279 | 341 | 1.07e-21 | 94.4 |
| MsG0180006255.01.T01 | AT2G42280 | 86.957 | 46 | 6 | 0 | 258 | 303 | 272 | 317 | 2.94e-21 | 92.8 |
| MsG0180006255.01.T01 | AT2G42280 | 86.957 | 46 | 6 | 0 | 258 | 303 | 272 | 317 | 4.11e-21 | 92.4 |
| MsG0180006255.01.T01 | AT4G09180 | 70.370 | 54 | 16 | 0 | 250 | 303 | 169 | 222 | 1.23e-19 | 86.7 |
Find 103 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTATATAGGCACTGTTTA+AGG | 0.208829 | 1:-101898768 | MsG0180006255.01.T01:three_prime_UTR |
| GTCTATTAGAAACTTAATTA+AGG | 0.239338 | 1:+101898564 | None:intergenic |
| GTTGTTGTTGTTATTATTAT+CGG | 0.271568 | 1:+101899409 | None:intergenic |
| AAGGTAATGCACACATTAAT+TGG | 0.276937 | 1:-101898749 | MsG0180006255.01.T01:three_prime_UTR |
| CTAATTTATCATCATTATAT+AGG | 0.291604 | 1:-101898780 | MsG0180006255.01.T01:three_prime_UTR |
| CTATATAATGATGATAAATT+AGG | 0.303885 | 1:+101898781 | None:intergenic |
| TGACATTCAATGAAAACTTA+AGG | 0.329278 | 1:+101898625 | None:intergenic |
| GGAGGATCACGCCTTCTTCC+TGG | 0.332014 | 1:-101899915 | MsG0180006255.01.T01:CDS |
| GTTCAAGCTGGTGGCTTTGA+TGG | 0.338638 | 1:-101899798 | MsG0180006255.01.T01:CDS |
| TTTACAAGGGACGGAATCTT+GGG | 0.341870 | 1:+101899107 | None:intergenic |
| GCAAACAGTGTTAAACAAAA+AGG | 0.359897 | 1:+101898531 | None:intergenic |
| TCCTCGTAGCATTGCTGAAC+GGG | 0.362115 | 1:-101899055 | MsG0180006255.01.T01:intron |
| AATGATAGGTAAGGAAAGTT+AGG | 0.373129 | 1:+101898829 | None:intergenic |
| TTGTTGTTGTTATTATTATC+GGG | 0.382053 | 1:+101899410 | None:intergenic |
| GACATTCAATGAAAACTTAA+GGG | 0.388334 | 1:+101898626 | None:intergenic |
| TGATCCTCCTACTCCTATTA+TGG | 0.392279 | 1:+101899929 | None:intergenic |
| TCTATTAGAAACTTAATTAA+GGG | 0.392750 | 1:+101898565 | None:intergenic |
| AATTATACCTTATCCATGTT+AGG | 0.394411 | 1:+101898875 | None:intergenic |
| ATCTCTGCTGTTGTTGTTGG+TGG | 0.394430 | 1:+101899832 | None:intergenic |
| ACCACTGTGGATGCCATAAT+AGG | 0.397171 | 1:-101899942 | MsG0180006255.01.T01:CDS |
| AAGATCTCTGCTGTTGTTGT+TGG | 0.403987 | 1:+101899829 | None:intergenic |
| TTTGCCCACGTTAAGTTAAG+AGG | 0.406351 | 1:-101898513 | MsG0180006255.01.T01:three_prime_UTR |
| GCATCAGCAGCAGCTGGAAA+TGG | 0.408966 | 1:-101899470 | MsG0180006255.01.T01:CDS |
| AAATAATGTTGTCCCGTTCC+AGG | 0.410987 | 1:+101899897 | None:intergenic |
| TTGAGAAGAAGAAAATACTA+TGG | 0.436830 | 1:+101899379 | None:intergenic |
| CTAGCAAATGAATTAATGAT+AGG | 0.442719 | 1:+101898815 | None:intergenic |
| GAAAGTTAGGAAGCAAAAGT+TGG | 0.446633 | 1:+101898842 | None:intergenic |
| TAGTCTCCCACAAACTTCTC+TGG | 0.449517 | 1:-101899157 | MsG0180006255.01.T01:CDS |
| TCTGCTGTTGTTGTTGGTGG+TGG | 0.454056 | 1:+101899835 | None:intergenic |
| TCACGCCTTCTTCCTGGAAC+GGG | 0.457043 | 1:-101899909 | MsG0180006255.01.T01:CDS |
| CTTGTAGTAATGAAGTAGTT+AGG | 0.457176 | 1:-101898706 | MsG0180006255.01.T01:three_prime_UTR |
| GTATCGTCCACCTTCCTCAT+CGG | 0.462261 | 1:-101900060 | MsG0180006255.01.T01:CDS |
| TGGCAAGTTGAAGAAGTTGC+AGG | 0.465868 | 1:-101898906 | MsG0180006255.01.T01:CDS |
| GAGAGAAGAACTAGAATAAG+TGG | 0.469542 | 1:-101898926 | MsG0180006255.01.T01:CDS |
| GGGGCCTCCACCCCAGGTAT+TGG | 0.479871 | 1:+101899430 | None:intergenic |
| ACAGAGCTCCATCAGTCAAA+CGG | 0.480020 | 1:-101900006 | MsG0180006255.01.T01:CDS |
| TATCGTCCACCTTCCTCATC+GGG | 0.481788 | 1:-101900059 | MsG0180006255.01.T01:CDS |
| TATGATTGAGAGTGGCTAGA+TGG | 0.483070 | 1:+101899730 | None:intergenic |
| CAGAGCTCCATCAGTCAAAC+GGG | 0.487084 | 1:-101900005 | MsG0180006255.01.T01:CDS |
| ATTATCGGGGCCTCCACCCC+AGG | 0.489981 | 1:+101899424 | None:intergenic |
| ATGAGTGGCGCATCCACGCT+TGG | 0.498051 | 1:+101899077 | None:intergenic |
| AAGAAGGTCGGGATCATCAT+TGG | 0.499212 | 1:+101899304 | None:intergenic |
| CATAATAACAATAACAATAA+CGG | 0.502093 | 1:-101899702 | MsG0180006255.01.T01:CDS |
| CCCACAAACTTCTCTGGAGA+TGG | 0.503550 | 1:-101899151 | MsG0180006255.01.T01:CDS |
| AAGTCTGAATTGAGTTTCAC+TGG | 0.510691 | 1:-101899542 | MsG0180006255.01.T01:CDS |
| CCTTGTACCTAACATGGATA+AGG | 0.512854 | 1:-101898882 | MsG0180006255.01.T01:CDS |
| CCTTATCCATGTTAGGTACA+AGG | 0.519581 | 1:+101898882 | None:intergenic |
| CAAACGGGTCTCACAAGGTA+TGG | 0.525076 | 1:-101899990 | MsG0180006255.01.T01:CDS |
| AGGCAATGTAGAAGAAGGTC+GGG | 0.527337 | 1:+101899293 | None:intergenic |
| GTGGTGTTGAGGAGAGAGCT+AGG | 0.530531 | 1:+101899960 | None:intergenic |
| GATTATGCATCAGCAGCAGC+TGG | 0.531366 | 1:-101899476 | MsG0180006255.01.T01:CDS |
| GGCTAGATGGTTGAGAAAGC+CGG | 0.532966 | 1:+101899743 | None:intergenic |
| TGCATACTAGTACCAATACC+TGG | 0.536914 | 1:-101899442 | MsG0180006255.01.T01:CDS |
| AAATGAATTAATGATAGGTA+AGG | 0.537160 | 1:+101898820 | None:intergenic |
| GAATTGAGTTTCACTGGTGG+AGG | 0.537805 | 1:-101899536 | MsG0180006255.01.T01:CDS |
| GTTGTCCCGTTCCAGGAAGA+AGG | 0.539397 | 1:+101899904 | None:intergenic |
| CCATCTCCAGAGAAGTTTGT+GGG | 0.544047 | 1:+101899151 | None:intergenic |
| TGTAAAATCCGTGCCAAGCG+TGG | 0.544695 | 1:-101899090 | MsG0180006255.01.T01:CDS |
| GGGGAATATTATGCATAAGC+TGG | 0.546019 | 1:+101899127 | None:intergenic |
| TGGCGCATCCACGCTTGGCA+CGG | 0.548021 | 1:+101899082 | None:intergenic |
| CCTCAATGCCCTCGAAACTC+AGG | 0.548042 | 1:-101899273 | MsG0180006255.01.T01:intron |
| ATCCTCGTAGCATTGCTGAA+CGG | 0.552987 | 1:-101899056 | MsG0180006255.01.T01:CDS |
| TGTGAGACCCGTTTGACTGA+TGG | 0.553828 | 1:+101899998 | None:intergenic |
| AGTACCAATACCTGGGGTGG+AGG | 0.556362 | 1:-101899434 | MsG0180006255.01.T01:CDS |
| TCCATCTCCAGAGAAGTTTG+TGG | 0.557386 | 1:+101899150 | None:intergenic |
| TCTTCTTACGAAGTTCAAGC+TGG | 0.557961 | 1:-101899810 | MsG0180006255.01.T01:CDS |
| GGAAGCAAAAGTTGGTAGCA+TGG | 0.560612 | 1:+101898850 | None:intergenic |
| GTCGGGATCATCATTGGTGT+CGG | 0.563524 | 1:+101899310 | None:intergenic |
| TGTTGTTGTTATTATTATCG+GGG | 0.564933 | 1:+101899411 | None:intergenic |
| ATCACGCCTTCTTCCTGGAA+CGG | 0.566174 | 1:-101899910 | MsG0180006255.01.T01:CDS |
| TGGCATCCACAGTGGTGTTG+AGG | 0.566500 | 1:+101899949 | None:intergenic |
| GAAGCAAAAGTTGGTAGCAT+GGG | 0.569316 | 1:+101898851 | None:intergenic |
| CATTGAGGCAATGTAGAAGA+AGG | 0.573373 | 1:+101899288 | None:intergenic |
| CCTGAGTTTCGAGGGCATTG+AGG | 0.579102 | 1:+101899273 | None:intergenic |
| AGATGGTTGAGAAAGCCGGC+TGG | 0.579941 | 1:+101899747 | None:intergenic |
| GAGGCAATGTAGAAGAAGGT+CGG | 0.583589 | 1:+101899292 | None:intergenic |
| TCTTACGAAGTTCAAGCTGG+TGG | 0.588514 | 1:-101899807 | MsG0180006255.01.T01:CDS |
| CTGTTGTTGCTGAGACGAAG+AGG | 0.588667 | 1:+101900025 | None:intergenic |
| TGTCAAGTTTAAAACTAGAG+AGG | 0.590336 | 1:+101898595 | None:intergenic |
| GTGGATGCCATAATAGGAGT+AGG | 0.597675 | 1:-101899936 | MsG0180006255.01.T01:CDS |
| AGATGGTACCTGAGTTTCGA+GGG | 0.602433 | 1:+101899265 | None:intergenic |
| AGTAGCCTCTTAACTTAACG+TGG | 0.603817 | 1:+101898508 | None:intergenic |
| GTCAAGTTTAAAACTAGAGA+GGG | 0.603955 | 1:+101898596 | None:intergenic |
| GCATACTAGTACCAATACCT+GGG | 0.607090 | 1:-101899441 | MsG0180006255.01.T01:CDS |
| CGTCAGAAAAGCTCTCCAGC+CGG | 0.607974 | 1:-101899762 | MsG0180006255.01.T01:CDS |
| AGCAATGCTACGAGGATGAG+TGG | 0.612328 | 1:+101899062 | None:intergenic |
| ATGATGATTATGATTGAGAG+TGG | 0.612751 | 1:+101899722 | None:intergenic |
| GAAGAAGAACCCGATGAGGA+AGG | 0.617996 | 1:+101900050 | None:intergenic |
| GAAGAACCCGATGAGGAAGG+TGG | 0.619178 | 1:+101900053 | None:intergenic |
| TTGATTGAATTGCAGCTGGG+GGG | 0.621095 | 1:-101899595 | MsG0180006255.01.T01:intron |
| GATGCCATAATAGGAGTAGG+AGG | 0.622651 | 1:-101899933 | MsG0180006255.01.T01:CDS |
| TCAGTCAAACGGGTCTCACA+AGG | 0.625307 | 1:-101899995 | MsG0180006255.01.T01:CDS |
| ACTAGTACCAATACCTGGGG+TGG | 0.626810 | 1:-101899437 | MsG0180006255.01.T01:CDS |
| GAGATGGTACCTGAGTTTCG+AGG | 0.631100 | 1:+101899264 | None:intergenic |
| TTACAAGGGACGGAATCTTG+GGG | 0.638798 | 1:+101899108 | None:intergenic |
| TCCTATTATGGCATCCACAG+TGG | 0.651189 | 1:+101899941 | None:intergenic |
| GCAGGACCTTGTACCTAACA+TGG | 0.655399 | 1:-101898888 | MsG0180006255.01.T01:CDS |
| TCTGAATTGAGTTTCACTGG+TGG | 0.663147 | 1:-101899539 | MsG0180006255.01.T01:CDS |
| GGAAGAAGAAGAACCCGATG+AGG | 0.673921 | 1:+101900046 | None:intergenic |
| CTCTCTCCTCAACACCACTG+TGG | 0.695914 | 1:-101899955 | MsG0180006255.01.T01:CDS |
| ACCCGTTCAGCAATGCTACG+AGG | 0.708822 | 1:+101899054 | None:intergenic |
| CATACTAGTACCAATACCTG+GGG | 0.719667 | 1:-101899440 | MsG0180006255.01.T01:CDS |
| GTAGCCTCTTAACTTAACGT+GGG | 0.721814 | 1:+101898509 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAACAATAACAATAA+CGG | - | Chr1:101898865-101898884 | MsG0180006255.01.T01:exon | 15.0% |
| !! | CTAATTTATCATCATTATAT+AGG | - | Chr1:101899787-101899806 | MsG0180006255.01.T01:CDS | 15.0% |
| !! | CTATATAATGATGATAAATT+AGG | + | Chr1:101899789-101899808 | None:intergenic | 15.0% |
| !! | TAACTAAAAATGAAATAATG+TGG | + | Chr1:101899359-101899378 | None:intergenic | 15.0% |
| !! | TCTATTAGAAACTTAATTAA+GGG | + | Chr1:101900005-101900024 | None:intergenic | 15.0% |
| !! | AAATGAATTAATGATAGGTA+AGG | + | Chr1:101899750-101899769 | None:intergenic | 20.0% |
| !! | ATTAATATTGTGAAAAGAGA+TGG | + | Chr1:101899322-101899341 | None:intergenic | 20.0% |
| !! | GTCTATTAGAAACTTAATTA+AGG | + | Chr1:101900006-101900025 | None:intergenic | 20.0% |
| !!! | GTTGTTGTTGTTATTATTAT+CGG | + | Chr1:101899161-101899180 | None:intergenic | 20.0% |
| !!! | TTGTTGTTGTTATTATTATC+GGG | + | Chr1:101899160-101899179 | None:intergenic | 20.0% |
| ! | AAAATGAAATAATGTGGTTG+TGG | + | Chr1:101899353-101899372 | None:intergenic | 25.0% |
| ! | AAACAGTGTTAAACAAAAAG+GGG | + | Chr1:101900037-101900056 | None:intergenic | 25.0% |
| ! | AATTATACCTTATCCATGTT+AGG | + | Chr1:101899695-101899714 | None:intergenic | 25.0% |
| ! | ACTACTAAGGATAAAAACTA+GGG | - | Chr1:101899902-101899921 | MsG0180006255.01.T01:CDS | 25.0% |
| ! | CAAACAGTGTTAAACAAAAA+GGG | + | Chr1:101900038-101900057 | None:intergenic | 25.0% |
| ! | CTAGCAAATGAATTAATGAT+AGG | + | Chr1:101899755-101899774 | None:intergenic | 25.0% |
| ! | GACATTCAATGAAAACTTAA+GGG | + | Chr1:101899944-101899963 | None:intergenic | 25.0% |
| ! | TAAGACAAAGTCAAAATCAA+TGG | - | Chr1:101898905-101898924 | MsG0180006255.01.T01:CDS | 25.0% |
| ! | TACTACTAAGGATAAAAACT+AGG | - | Chr1:101899901-101899920 | MsG0180006255.01.T01:CDS | 25.0% |
| ! | TGACATTCAATGAAAACTTA+AGG | + | Chr1:101899945-101899964 | None:intergenic | 25.0% |
| ! | TGTAGTCAAAAATACTACTA+AGG | - | Chr1:101899889-101899908 | MsG0180006255.01.T01:CDS | 25.0% |
| ! | TTGAGAAGAAGAAAATACTA+TGG | + | Chr1:101899191-101899210 | None:intergenic | 25.0% |
| !! | TGCATAATCAACAACATTTT+CGG | + | Chr1:101899080-101899099 | None:intergenic | 25.0% |
| !! | TGTTGTTGTTATTATTATCG+GGG | + | Chr1:101899159-101899178 | None:intergenic | 25.0% |
| AAACAGAAGCAGAAAGAAAA+AGG | + | Chr1:101899567-101899586 | None:intergenic | 30.0% | |
| AACAGTGTTAAACAAAAAGG+GGG | + | Chr1:101900036-101900055 | None:intergenic | 30.0% | |
| AAGGTAATGCACACATTAAT+TGG | - | Chr1:101899818-101899837 | MsG0180006255.01.T01:CDS | 30.0% | |
| AATGATAGGTAAGGAAAGTT+AGG | + | Chr1:101899741-101899760 | None:intergenic | 30.0% | |
| ATGATGATTATGATTGAGAG+TGG | + | Chr1:101898848-101898867 | None:intergenic | 30.0% | |
| CTTGTAGTAATGAAGTAGTT+AGG | - | Chr1:101899861-101899880 | MsG0180006255.01.T01:CDS | 30.0% | |
| GCAAACAGTGTTAAACAAAA+AGG | + | Chr1:101900039-101900058 | None:intergenic | 30.0% | |
| ! | CATTATATAGGCACTGTTTA+AGG | - | Chr1:101899799-101899818 | MsG0180006255.01.T01:CDS | 30.0% |
| ! | GTCAAGTTTAAAACTAGAGA+GGG | + | Chr1:101899974-101899993 | None:intergenic | 30.0% |
| ! | TGTCAAGTTTAAAACTAGAG+AGG | + | Chr1:101899975-101899994 | None:intergenic | 30.0% |
| !! | ATTTTTGATTGAATTGCAGC+TGG | - | Chr1:101898968-101898987 | MsG0180006255.01.T01:intron | 30.0% |
| !! | TTTTTGATTGAATTGCAGCT+GGG | - | Chr1:101898969-101898988 | MsG0180006255.01.T01:intron | 30.0% |
| AAGTCTGAATTGAGTTTCAC+TGG | - | Chr1:101899025-101899044 | MsG0180006255.01.T01:intron | 35.0% | |
| ACAGTGTTAAACAAAAAGGG+GGG | + | Chr1:101900035-101900054 | None:intergenic | 35.0% | |
| CTATTGCAATACATGTATGC+AGG | - | Chr1:101899619-101899638 | MsG0180006255.01.T01:intron | 35.0% | |
| GAAAGTTAGGAAGCAAAAGT+TGG | + | Chr1:101899728-101899747 | None:intergenic | 35.0% | |
| GAGAGAAGAACTAGAATAAG+TGG | - | Chr1:101899641-101899660 | MsG0180006255.01.T01:intron | 35.0% | |
| !! | TTTTGATTGAATTGCAGCTG+GGG | - | Chr1:101898970-101898989 | MsG0180006255.01.T01:intron | 35.0% |
| AAATAATGTTGTCCCGTTCC+AGG | + | Chr1:101898673-101898692 | None:intergenic | 40.0% | |
| AAGATCTCTGCTGTTGTTGT+TGG | + | Chr1:101898741-101898760 | None:intergenic | 40.0% | |
| AGTAGCCTCTTAACTTAACG+TGG | + | Chr1:101900062-101900081 | None:intergenic | 40.0% | |
| CAGTGTTAAACAAAAAGGGG+GGG | + | Chr1:101900034-101900053 | None:intergenic | 40.0% | |
| CATACTAGTACCAATACCTG+GGG | - | Chr1:101899127-101899146 | MsG0180006255.01.T01:CDS | 40.0% | |
| CATTGAGGCAATGTAGAAGA+AGG | + | Chr1:101899282-101899301 | None:intergenic | 40.0% | |
| CCTTATCCATGTTAGGTACA+AGG | + | Chr1:101899688-101899707 | None:intergenic | 40.0% | |
| CCTTGTACCTAACATGGATA+AGG | - | Chr1:101899685-101899704 | MsG0180006255.01.T01:intron | 40.0% | |
| GCATACTAGTACCAATACCT+GGG | - | Chr1:101899126-101899145 | MsG0180006255.01.T01:CDS | 40.0% | |
| GGGGAATATTATGCATAAGC+TGG | + | Chr1:101899443-101899462 | None:intergenic | 40.0% | |
| GTAGCCTCTTAACTTAACGT+GGG | + | Chr1:101900061-101900080 | None:intergenic | 40.0% | |
| GTGGGAGACTATACTGAATT+AGG | + | Chr1:101899401-101899420 | None:intergenic | 40.0% | |
| TATGATTGAGAGTGGCTAGA+TGG | + | Chr1:101898840-101898859 | None:intergenic | 40.0% | |
| TCTGAATTGAGTTTCACTGG+TGG | - | Chr1:101899028-101899047 | MsG0180006255.01.T01:intron | 40.0% | |
| TCTTCTTACGAAGTTCAAGC+TGG | - | Chr1:101898757-101898776 | MsG0180006255.01.T01:three_prime_UTR | 40.0% | |
| TGATCCTCCTACTCCTATTA+TGG | + | Chr1:101898641-101898660 | None:intergenic | 40.0% | |
| TGCATACTAGTACCAATACC+TGG | - | Chr1:101899125-101899144 | MsG0180006255.01.T01:CDS | 40.0% | |
| TTTACAAGGGACGGAATCTT+GGG | + | Chr1:101899463-101899482 | None:intergenic | 40.0% | |
| TTTGATTGAATTGCAGCTGG+GGG | - | Chr1:101898971-101898990 | MsG0180006255.01.T01:intron | 40.0% | |
| TTTGCCCACGTTAAGTTAAG+AGG | - | Chr1:101900054-101900073 | MsG0180006255.01.T01:CDS | 40.0% | |
| ! | TTTTACAAGGGACGGAATCT+TGG | + | Chr1:101899464-101899483 | None:intergenic | 40.0% |
| !! | GAAGCAAAAGTTGGTAGCAT+GGG | + | Chr1:101899719-101899738 | None:intergenic | 40.0% |
| AAGAAGGTCGGGATCATCAT+TGG | + | Chr1:101899266-101899285 | None:intergenic | 45.0% | |
| ACAGAGCTCCATCAGTCAAA+CGG | - | Chr1:101898561-101898580 | MsG0180006255.01.T01:three_prime_UTR | 45.0% | |
| ACCACTGTGGATGCCATAAT+AGG | - | Chr1:101898625-101898644 | MsG0180006255.01.T01:three_prime_UTR | 45.0% | |
| AGATGGTACCTGAGTTTCGA+GGG | + | Chr1:101899305-101899324 | None:intergenic | 45.0% | |
| AGGCAATGTAGAAGAAGGTC+GGG | + | Chr1:101899277-101899296 | None:intergenic | 45.0% | |
| ATCCTCGTAGCATTGCTGAA+CGG | - | Chr1:101899511-101899530 | MsG0180006255.01.T01:CDS | 45.0% | |
| CCATCTCCAGAGAAGTTTGT+GGG | + | Chr1:101899419-101899438 | None:intergenic | 45.0% | |
| GAATTGAGTTTCACTGGTGG+AGG | - | Chr1:101899031-101899050 | MsG0180006255.01.T01:intron | 45.0% | |
| GAGGCAATGTAGAAGAAGGT+CGG | + | Chr1:101899278-101899297 | None:intergenic | 45.0% | |
| GATGCCATAATAGGAGTAGG+AGG | - | Chr1:101898634-101898653 | MsG0180006255.01.T01:three_prime_UTR | 45.0% | |
| GTGGATGCCATAATAGGAGT+AGG | - | Chr1:101898631-101898650 | MsG0180006255.01.T01:three_prime_UTR | 45.0% | |
| TAGTCTCCCACAAACTTCTC+TGG | - | Chr1:101899410-101899429 | MsG0180006255.01.T01:CDS | 45.0% | |
| TCCATCTCCAGAGAAGTTTG+TGG | + | Chr1:101899420-101899439 | None:intergenic | 45.0% | |
| TCCTATTATGGCATCCACAG+TGG | + | Chr1:101898629-101898648 | None:intergenic | 45.0% | |
| TCTTACGAAGTTCAAGCTGG+TGG | - | Chr1:101898760-101898779 | MsG0180006255.01.T01:three_prime_UTR | 45.0% | |
| TTACAAGGGACGGAATCTTG+GGG | + | Chr1:101899462-101899481 | None:intergenic | 45.0% | |
| TTGATTGAATTGCAGCTGGG+GGG | - | Chr1:101898972-101898991 | MsG0180006255.01.T01:intron | 45.0% | |
| ! | ATCTCTGCTGTTGTTGTTGG+TGG | + | Chr1:101898738-101898757 | None:intergenic | 45.0% |
| ! | GCTTGGCACGGATTTTACAA+GGG | + | Chr1:101899476-101899495 | None:intergenic | 45.0% |
| ! | TGGCAAGTTGAAGAAGTTGC+AGG | - | Chr1:101899661-101899680 | MsG0180006255.01.T01:intron | 45.0% |
| !! | GGAAGCAAAAGTTGGTAGCA+TGG | + | Chr1:101899720-101899739 | None:intergenic | 45.0% |
| !! | TATTATTATTATTATTAGTT+TGG | + | Chr1:101899216-101899235 | None:intergenic | 5.0% |
| !!! | ATTATTATTATTATTAGTTT+GGG | + | Chr1:101899215-101899234 | None:intergenic | 5.0% |
| ACTAGTACCAATACCTGGGG+TGG | - | Chr1:101899130-101899149 | MsG0180006255.01.T01:CDS | 50.0% | |
| AGCAATGCTACGAGGATGAG+TGG | + | Chr1:101899508-101899527 | None:intergenic | 50.0% | |
| ATCACGCCTTCTTCCTGGAA+CGG | - | Chr1:101898657-101898676 | MsG0180006255.01.T01:three_prime_UTR | 50.0% | |
| CAAACGGGTCTCACAAGGTA+TGG | - | Chr1:101898577-101898596 | MsG0180006255.01.T01:three_prime_UTR | 50.0% | |
| CAGAGCTCCATCAGTCAAAC+GGG | - | Chr1:101898562-101898581 | MsG0180006255.01.T01:three_prime_UTR | 50.0% | |
| CTGTTGTTGCTGAGACGAAG+AGG | + | Chr1:101898545-101898564 | None:intergenic | 50.0% | |
| GAAGAAGAACCCGATGAGGA+AGG | + | Chr1:101898520-101898539 | None:intergenic | 50.0% | |
| GAGATGGTACCTGAGTTTCG+AGG | + | Chr1:101899306-101899325 | None:intergenic | 50.0% | |
| GATTATGCATCAGCAGCAGC+TGG | - | Chr1:101899091-101899110 | MsG0180006255.01.T01:CDS | 50.0% | |
| GCAGGACCTTGTACCTAACA+TGG | - | Chr1:101899679-101899698 | MsG0180006255.01.T01:intron | 50.0% | |
| GGAAGAAGAAGAACCCGATG+AGG | + | Chr1:101898524-101898543 | None:intergenic | 50.0% | |
| GGCTAGATGGTTGAGAAAGC+CGG | + | Chr1:101898827-101898846 | None:intergenic | 50.0% | |
| GTATCGTCCACCTTCCTCAT+CGG | - | Chr1:101898507-101898526 | MsG0180006255.01.T01:three_prime_UTR | 50.0% | |
| GTCGGGATCATCATTGGTGT+CGG | + | Chr1:101899260-101899279 | None:intergenic | 50.0% | |
| TATCGTCCACCTTCCTCATC+GGG | - | Chr1:101898508-101898527 | MsG0180006255.01.T01:three_prime_UTR | 50.0% | |
| TCAGTCAAACGGGTCTCACA+AGG | - | Chr1:101898572-101898591 | MsG0180006255.01.T01:three_prime_UTR | 50.0% | |
| TCCTCGTAGCATTGCTGAAC+GGG | - | Chr1:101899512-101899531 | MsG0180006255.01.T01:CDS | 50.0% | |
| TGTAAAATCCGTGCCAAGCG+TGG | - | Chr1:101899477-101899496 | MsG0180006255.01.T01:CDS | 50.0% | |
| TGTGAGACCCGTTTGACTGA+TGG | + | Chr1:101898572-101898591 | None:intergenic | 50.0% | |
| ! | CCCACAAACTTCTCTGGAGA+TGG | - | Chr1:101899416-101899435 | MsG0180006255.01.T01:CDS | 50.0% |
| ! | CGCTTGGCACGGATTTTACA+AGG | + | Chr1:101899477-101899496 | None:intergenic | 50.0% |
| ! | GCTTTTCTGACGGAGCAAAG+CGG | + | Chr1:101898797-101898816 | None:intergenic | 50.0% |
| ! | GGCACGGATTTTACAAGGGA+CGG | + | Chr1:101899472-101899491 | None:intergenic | 50.0% |
| ! | TCTGCTGTTGTTGTTGGTGG+TGG | + | Chr1:101898735-101898754 | None:intergenic | 50.0% |
| !! | GTTCAAGCTGGTGGCTTTGA+TGG | - | Chr1:101898769-101898788 | MsG0180006255.01.T01:three_prime_UTR | 50.0% |
| ACCCGTTCAGCAATGCTACG+AGG | + | Chr1:101899516-101899535 | None:intergenic | 55.0% | |
| AGATGGTTGAGAAAGCCGGC+TGG | + | Chr1:101898823-101898842 | None:intergenic | 55.0% | |
| AGTACCAATACCTGGGGTGG+AGG | - | Chr1:101899133-101899152 | MsG0180006255.01.T01:CDS | 55.0% | |
| CCTCAATGCCCTCGAAACTC+AGG | - | Chr1:101899294-101899313 | MsG0180006255.01.T01:CDS | 55.0% | |
| CGTCAGAAAAGCTCTCCAGC+CGG | - | Chr1:101898805-101898824 | MsG0180006255.01.T01:three_prime_UTR | 55.0% | |
| CTCTCTCCTCAACACCACTG+TGG | - | Chr1:101898612-101898631 | MsG0180006255.01.T01:three_prime_UTR | 55.0% | |
| GAAGAACCCGATGAGGAAGG+TGG | + | Chr1:101898517-101898536 | None:intergenic | 55.0% | |
| GCATCAGCAGCAGCTGGAAA+TGG | - | Chr1:101899097-101899116 | MsG0180006255.01.T01:CDS | 55.0% | |
| GTTGTCCCGTTCCAGGAAGA+AGG | + | Chr1:101898666-101898685 | None:intergenic | 55.0% | |
| TCACGCCTTCTTCCTGGAAC+GGG | - | Chr1:101898658-101898677 | MsG0180006255.01.T01:three_prime_UTR | 55.0% | |
| TGGGGGGTTCACAATCACGA+GGG | - | Chr1:101898988-101899007 | MsG0180006255.01.T01:intron | 55.0% | |
| ! | CGGCTGGAGAGCTTTTCTGA+CGG | + | Chr1:101898807-101898826 | None:intergenic | 55.0% |
| ! | GTGGTGTTGAGGAGAGAGCT+AGG | + | Chr1:101898610-101898629 | None:intergenic | 55.0% |
| ! | TGGCATCCACAGTGGTGTTG+AGG | + | Chr1:101898621-101898640 | None:intergenic | 55.0% |
| !! | CCTGAGTTTCGAGGGCATTG+AGG | + | Chr1:101899297-101899316 | None:intergenic | 55.0% |
| ATGAGTGGCGCATCCACGCT+TGG | + | Chr1:101899493-101899512 | None:intergenic | 60.0% | |
| CTGGGGGGTTCACAATCACG+AGG | - | Chr1:101898987-101899006 | MsG0180006255.01.T01:intron | 60.0% | |
| GGAGGATCACGCCTTCTTCC+TGG | - | Chr1:101898652-101898671 | MsG0180006255.01.T01:three_prime_UTR | 60.0% | |
| GGGGGGTTCACAATCACGAG+GGG | - | Chr1:101898989-101899008 | MsG0180006255.01.T01:intron | 60.0% | |
| ATTATCGGGGCCTCCACCCC+AGG | + | Chr1:101899146-101899165 | None:intergenic | 65.0% | |
| CTGCTGCTGCTGCTGCTGCT+GGG | + | Chr1:101898710-101898729 | None:intergenic | 65.0% | |
| TGGCGCATCCACGCTTGGCA+CGG | + | Chr1:101899488-101899507 | None:intergenic | 65.0% | |
| GCTGCTGCTGCTGCTGCTGC+TGG | + | Chr1:101898711-101898730 | None:intergenic | 70.0% | |
| GGGGCCTCCACCCCAGGTAT+TGG | + | Chr1:101899140-101899159 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 101898505 | 101900084 | 101898505 | ID=MsG0180006255.01;Name=MsG0180006255.01 |
| Chr1 | mRNA | 101898505 | 101900084 | 101898505 | ID=MsG0180006255.01.T01;Parent=MsG0180006255.01;Name=MsG0180006255.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0.66|0.75|1|0.66|0.75|4|372|304 |
| Chr1 | exon | 101898505 | 101898948 | 101898505 | ID=MsG0180006255.01.T01:exon:42585;Parent=MsG0180006255.01.T01 |
| Chr1 | exon | 101899056 | 101899181 | 101899056 | ID=MsG0180006255.01.T01:exon:42584;Parent=MsG0180006255.01.T01 |
| Chr1 | exon | 101899274 | 101899602 | 101899274 | ID=MsG0180006255.01.T01:exon:42583;Parent=MsG0180006255.01.T01 |
| Chr1 | exon | 101899697 | 101900084 | 101899697 | ID=MsG0180006255.01.T01:exon:42582;Parent=MsG0180006255.01.T01 |
| Chr1 | CDS | 101899697 | 101900084 | 101899697 | ID=MsG0180006255.01.T01:cds;Parent=MsG0180006255.01.T01 |
| Chr1 | CDS | 101899274 | 101899602 | 101899274 | ID=MsG0180006255.01.T01:cds;Parent=MsG0180006255.01.T01 |
| Chr1 | CDS | 101899056 | 101899181 | 101899056 | ID=MsG0180006255.01.T01:cds;Parent=MsG0180006255.01.T01 |
| Chr1 | CDS | 101898877 | 101898948 | 101898877 | ID=MsG0180006255.01.T01:cds;Parent=MsG0180006255.01.T01 |
| Chr1 | three_prime_UTR | 101898505 | 101898876 | 101898505 | ID=MsG0180006255.01.T01:three_prime_utr;Parent=MsG0180006255.01.T01 |
| Gene Sequence |
| Protein sequence |
