Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006293.01.T01 | XP_003592876.1 | 98.01 | 402 | 2 | 1 | 1 | 396 | 1 | 402 | 0 | 794 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006293.01.T01 | Q1SKU3 | 98.010 | 402 | 2 | 1 | 1 | 396 | 1 | 402 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005199.01 | MsG0280006293.01 | 0.825370 | 4.864488e-54 | 4.425192e-51 |
| MsG0280006293.01 | MsG0380016337.01 | 0.821865 | 3.216792e-53 | 2.648869e-50 |
| MsG0280006293.01 | MsG0580024080.01 | 0.835296 | 1.822737e-56 | 2.219770e-53 |
| MsG0280006293.01 | MsG0780036637.01 | 0.820020 | 8.552238e-53 | 6.689425e-50 |
| MsG0280006293.01 | MsG0780041213.01 | 0.844795 | 6.060419e-59 | 9.895402e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006293.01.T01 | MTR_2g005260 | 98.010 | 402 | 2 | 1 | 1 | 396 | 1 | 402 | 0.0 | 794 |
| MsG0280006293.01.T01 | MTR_2g005260 | 91.542 | 402 | 1 | 2 | 1 | 396 | 1 | 375 | 0.0 | 724 |
| MsG0280006293.01.T01 | MTR_2g005260 | 97.464 | 276 | 1 | 1 | 127 | 396 | 1 | 276 | 0.0 | 541 |
| MsG0280006293.01.T01 | MTR_4g081900 | 72.174 | 345 | 79 | 2 | 1 | 339 | 29 | 362 | 1.28e-175 | 494 |
| MsG0280006293.01.T01 | MTR_4g081890 | 73.178 | 343 | 74 | 3 | 1 | 336 | 29 | 360 | 8.96e-174 | 489 |
| MsG0280006293.01.T01 | MTR_3g092200 | 30.565 | 301 | 185 | 6 | 3 | 294 | 7 | 292 | 4.69e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006293.01.T01 | AT1G57680 | 56.286 | 350 | 142 | 3 | 1 | 340 | 1 | 349 | 1.27e-120 | 354 |
| MsG0280006293.01.T01 | AT1G57680 | 56.286 | 350 | 142 | 3 | 1 | 340 | 1 | 349 | 1.27e-120 | 354 |
| MsG0280006293.01.T01 | AT1G57680 | 56.286 | 350 | 142 | 3 | 1 | 340 | 1 | 349 | 1.27e-120 | 354 |
Find 96 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCACTTGTATGTTGTTC+TGG | 0.136495 | 2:+109318 | MsG0280006293.01.T01:CDS |
| GTTGAATAAAACCTTGATTA+TGG | 0.209985 | 2:-108636 | None:intergenic |
| TTACTTAGTACCGTTCTTCT+TGG | 0.246463 | 2:+109087 | MsG0280006293.01.T01:CDS |
| TTTGTGTTTCCTTCCATTAA+GGG | 0.263956 | 2:+109221 | MsG0280006293.01.T01:CDS |
| CATTCATCTTATTTGTAATC+TGG | 0.268286 | 2:+108695 | MsG0280006293.01.T01:CDS |
| GACGTGCCCTTCACTTAAAA+TGG | 0.278233 | 2:+108755 | MsG0280006293.01.T01:CDS |
| ACCTCAGTTAGACAAGAATA+AGG | 0.305847 | 2:+108987 | MsG0280006293.01.T01:CDS |
| GGGGTCTAGGTGAAATTATT+AGG | 0.311728 | 2:+108719 | MsG0280006293.01.T01:CDS |
| CTGGAATTATGAGCAGAAAA+TGG | 0.319368 | 2:+108887 | MsG0280006293.01.T01:CDS |
| GAATGCTTCGGCAGCAAATC+TGG | 0.324517 | 2:-108527 | None:intergenic |
| TTGCACTTGTATGTTGTTCT+GGG | 0.341889 | 2:+109319 | MsG0280006293.01.T01:CDS |
| CCCGGATCACCGTCACTTCC+AGG | 0.354198 | 2:+109645 | MsG0280006293.01.T01:CDS |
| TCAACAAAGGTTTACAGAAA+AGG | 0.373868 | 2:+109175 | MsG0280006293.01.T01:CDS |
| TTTGTAATCTGGTGGGGTCT+AGG | 0.374213 | 2:+108706 | MsG0280006293.01.T01:CDS |
| CAACAAAGGTTTACAGAAAA+GGG | 0.378116 | 2:+109176 | MsG0280006293.01.T01:CDS |
| CAAACCAAGAAGAATCAAAA+TGG | 0.383211 | 2:-108575 | None:intergenic |
| GGGTGGTGTTGCACTACGGC+TGG | 0.385070 | 2:-109625 | None:intergenic |
| ACCTGGAAGTGACGGTGATC+CGG | 0.386511 | 2:-109646 | None:intergenic |
| TATCACTAGCCAGAGTCATT+TGG | 0.389755 | 2:+109461 | MsG0280006293.01.T01:CDS |
| AGTTGCAGATTGTTTAGCTC+TGG | 0.392033 | 2:+109371 | MsG0280006293.01.T01:CDS |
| AAGTCAGGATAATGGCAAAA+AGG | 0.395416 | 2:-109110 | None:intergenic |
| GAAAAGGGTGTTGCTTCAAC+TGG | 0.400149 | 2:+109573 | MsG0280006293.01.T01:CDS |
| CCTGGAAGTGACGGTGATCC+GGG | 0.407160 | 2:-109645 | None:intergenic |
| ATGGCACAATAACTTGGGTT+GGG | 0.415265 | 2:-109683 | None:intergenic |
| CATCTTATTTGTAATCTGGT+GGG | 0.424700 | 2:+108699 | MsG0280006293.01.T01:CDS |
| AGATTTGCTGCCGAAGCATT+CGG | 0.431030 | 2:+108529 | MsG0280006293.01.T01:CDS |
| AACTTGGGTTGGGGATTGCA+TGG | 0.433060 | 2:-109673 | None:intergenic |
| AATGACTCTGGCTAGTGATA+AGG | 0.433949 | 2:-109458 | None:intergenic |
| TCATCTTATTTGTAATCTGG+TGG | 0.438642 | 2:+108698 | MsG0280006293.01.T01:CDS |
| ATGACTCTGGCTAGTGATAA+GGG | 0.438994 | 2:-109457 | None:intergenic |
| CCGTGCACCCTTGCAGAGGT+TGG | 0.447505 | 2:+108861 | MsG0280006293.01.T01:CDS |
| ATCTTATTTGTAATCTGGTG+GGG | 0.453260 | 2:+108700 | MsG0280006293.01.T01:CDS |
| CGCTCTCGAATCCATAATCA+AGG | 0.454403 | 2:+108625 | MsG0280006293.01.T01:CDS |
| GCTGCTATGGCACAATAACT+TGG | 0.457884 | 2:-109689 | None:intergenic |
| CCCTTGCAGAGGTTGGAGAC+TGG | 0.459243 | 2:+108868 | MsG0280006293.01.T01:CDS |
| GAAATACAAGTGTGAGGAAG+AGG | 0.466208 | 2:-108834 | None:intergenic |
| GAAGAACGGTACTAAGTAAA+GGG | 0.471576 | 2:-109083 | None:intergenic |
| CTTCGGCAGCAAATCTGGAC+AGG | 0.473877 | 2:-108522 | None:intergenic |
| AGAGCTAAACAATCTGCAAC+TGG | 0.476529 | 2:-109369 | None:intergenic |
| GTTGCAGATTGTTTAGCTCT+GGG | 0.488179 | 2:+109372 | MsG0280006293.01.T01:CDS |
| AGAAGAACGGTACTAAGTAA+AGG | 0.495985 | 2:-109084 | None:intergenic |
| GGGGATTGCATGGGCCAACC+TGG | 0.496851 | 2:-109663 | None:intergenic |
| TATGGCACAATAACTTGGGT+TGG | 0.509350 | 2:-109684 | None:intergenic |
| AAGGTAGGAAGTCAGGATAA+TGG | 0.511696 | 2:-109118 | None:intergenic |
| TGTCACCACACCGAATGCTT+CGG | 0.512183 | 2:-108539 | None:intergenic |
| TGGCACAATAACTTGGGTTG+GGG | 0.518698 | 2:-109682 | None:intergenic |
| CCTCAGTTAGACAAGAATAA+GGG | 0.519352 | 2:+108988 | MsG0280006293.01.T01:CDS |
| GAAAATGCCCGGCTTAGTCC+TGG | 0.529972 | 2:+109498 | MsG0280006293.01.T01:CDS |
| CATTATCTTCCAAATGACTC+TGG | 0.530554 | 2:-109470 | None:intergenic |
| CCAACCTCTGCAAGGGTGCA+CGG | 0.530849 | 2:-108861 | None:intergenic |
| GCTTCAAACATAAAATGCTC+AGG | 0.535570 | 2:-109276 | None:intergenic |
| AAAAGCTGAAGAAGAAACAT+TGG | 0.535607 | 2:-108949 | None:intergenic |
| GGTGGTGTTGCACTACGGCT+GGG | 0.535611 | 2:-109624 | None:intergenic |
| TCCTCCGTGCACCCTTGCAG+AGG | 0.540397 | 2:+108857 | MsG0280006293.01.T01:CDS |
| ACTTGGGTTGGGGATTGCAT+GGG | 0.547759 | 2:-109672 | None:intergenic |
| AATACCTACCAGGACTAAGC+CGG | 0.548682 | 2:-109506 | None:intergenic |
| TCCAGTCTCCAACCTCTGCA+AGG | 0.553487 | 2:-108869 | None:intergenic |
| CACTACGGCTGGGAGAGAAA+AGG | 0.561488 | 2:-109614 | None:intergenic |
| ATCTACAAGACTTGGAAGCT+AGG | 0.563095 | 2:+109397 | MsG0280006293.01.T01:CDS |
| ATCCGGGTGGTGTTGCACTA+CGG | 0.565464 | 2:-109629 | None:intergenic |
| AGCCGTAGTGCAACACCACC+CGG | 0.570029 | 2:+109627 | MsG0280006293.01.T01:CDS |
| TGCCCTTCACTTAAAATGGA+AGG | 0.570691 | 2:+108759 | MsG0280006293.01.T01:CDS |
| TAAGTAAAGGGTAAGTACAC+AGG | 0.570980 | 2:-109071 | None:intergenic |
| ATGTTATATTGTATCCAACA+TGG | 0.571201 | 2:+108795 | MsG0280006293.01.T01:CDS |
| TCTGGGAAATCTACAAGACT+TGG | 0.572100 | 2:+109389 | MsG0280006293.01.T01:CDS |
| TTCGGCAGCAAATCTGGACA+GGG | 0.581106 | 2:-108521 | None:intergenic |
| GATTCATCTGAATACCTACC+AGG | 0.582625 | 2:-109516 | None:intergenic |
| TTGAAATTAGTCATCAACAA+AGG | 0.583602 | 2:+109162 | MsG0280006293.01.T01:CDS |
| TGTTATATTGTATCCAACAT+GGG | 0.587232 | 2:+108796 | MsG0280006293.01.T01:CDS |
| AATGCAATTCTAATAATCCA+AGG | 0.594476 | 2:-108676 | None:intergenic |
| ATACCTACCAGGACTAAGCC+GGG | 0.594514 | 2:-109505 | None:intergenic |
| GATCACCGTCACTTCCAGGT+TGG | 0.595185 | 2:+109649 | MsG0280006293.01.T01:CDS |
| TCAGATGAATCAACAAAGCG+TGG | 0.595190 | 2:+109528 | MsG0280006293.01.T01:CDS |
| CCAGTCTCCAACCTCTGCAA+GGG | 0.602446 | 2:-108868 | None:intergenic |
| CTGCTATGGCACAATAACTT+GGG | 0.603852 | 2:-109688 | None:intergenic |
| ACTTGGAAGCTAGGACTAGG+AGG | 0.606767 | 2:+109406 | MsG0280006293.01.T01:CDS |
| CTTGATTATGGATTCGAGAG+CGG | 0.616039 | 2:-108624 | None:intergenic |
| CCCTTATTCTTGTCTAACTG+AGG | 0.619051 | 2:-108988 | None:intergenic |
| GCTGAAGAAGAAACATTGGA+AGG | 0.623753 | 2:-108945 | None:intergenic |
| AAGTAAAGGGTAAGTACACA+GGG | 0.626323 | 2:-109070 | None:intergenic |
| ATAATGTTGAGGAAAATGCC+CGG | 0.641939 | 2:+109487 | MsG0280006293.01.T01:CDS |
| AAGACTTGGAAGCTAGGACT+AGG | 0.643546 | 2:+109403 | MsG0280006293.01.T01:CDS |
| AGGTTCTGCAAATCCCATGT+TGG | 0.653113 | 2:-108809 | None:intergenic |
| CTAAACAATCTGCAACTGGA+CGG | 0.656325 | 2:-109365 | None:intergenic |
| TCATTTGGAAGATAATGTTG+AGG | 0.658087 | 2:+109476 | MsG0280006293.01.T01:CDS |
| CAGATGAATCAACAAAGCGT+GGG | 0.669113 | 2:+109529 | MsG0280006293.01.T01:CDS |
| TCGGCAGCAAATCTGGACAG+GGG | 0.670257 | 2:-108520 | None:intergenic |
| ATGGGCCAACCTGGAAGTGA+CGG | 0.673283 | 2:-109654 | None:intergenic |
| AAGAAAAGCCAAGAAAACAA+AGG | 0.675305 | 2:-109298 | None:intergenic |
| ACAAGTGTGAGGAAGAGGCA+AGG | 0.681559 | 2:-108829 | None:intergenic |
| GCTGTGCTTGTAAAATAATG+CGG | 0.697719 | 2:-109027 | None:intergenic |
| GGAGGAGAAATACAAGTGTG+AGG | 0.697754 | 2:-108840 | None:intergenic |
| TGCTGCCGAAGCATTCGGTG+TGG | 0.699184 | 2:+108534 | MsG0280006293.01.T01:CDS |
| ACCTCTGCAAGGGTGCACGG+AGG | 0.720964 | 2:-108858 | None:intergenic |
| ATGCCCGGCTTAGTCCTGGT+AGG | 0.725216 | 2:+109502 | MsG0280006293.01.T01:CDS |
| GGAAGTGACGGTGATCCGGG+TGG | 0.749090 | 2:-109642 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAACTCAATTATTTTAG+TGG | + | Chr2:108652-108671 | MsG0280006293.01.T01:CDS | 20.0% |
| ! | AATGCAATTCTAATAATCCA+AGG | - | Chr2:108679-108698 | None:intergenic | 25.0% |
| ! | ATGTTATATTGTATCCAACA+TGG | + | Chr2:108795-108814 | MsG0280006293.01.T01:CDS | 25.0% |
| ! | GTTGAATAAAACCTTGATTA+TGG | - | Chr2:108639-108658 | None:intergenic | 25.0% |
| ! | TGTTATATTGTATCCAACAT+GGG | + | Chr2:108796-108815 | MsG0280006293.01.T01:CDS | 25.0% |
| ! | TTGAAATTAGTCATCAACAA+AGG | + | Chr2:109162-109181 | MsG0280006293.01.T01:CDS | 25.0% |
| !! | CATTCATCTTATTTGTAATC+TGG | + | Chr2:108695-108714 | MsG0280006293.01.T01:CDS | 25.0% |
| AAAAGCTGAAGAAGAAACAT+TGG | - | Chr2:108952-108971 | None:intergenic | 30.0% | |
| AAGAAAAGCCAAGAAAACAA+AGG | - | Chr2:109301-109320 | None:intergenic | 30.0% | |
| CAAACCAAGAAGAATCAAAA+TGG | - | Chr2:108578-108597 | None:intergenic | 30.0% | |
| CAACAAAGGTTTACAGAAAA+GGG | + | Chr2:109176-109195 | MsG0280006293.01.T01:CDS | 30.0% | |
| TCAACAAAGGTTTACAGAAA+AGG | + | Chr2:109175-109194 | MsG0280006293.01.T01:CDS | 30.0% | |
| TCATTTGGAAGATAATGTTG+AGG | + | Chr2:109476-109495 | MsG0280006293.01.T01:CDS | 30.0% | |
| TTTGTGTTTCCTTCCATTAA+GGG | + | Chr2:109221-109240 | MsG0280006293.01.T01:CDS | 30.0% | |
| ! | ATCTTATTTGTAATCTGGTG+GGG | + | Chr2:108700-108719 | MsG0280006293.01.T01:CDS | 30.0% |
| ! | CATCTTATTTGTAATCTGGT+GGG | + | Chr2:108699-108718 | MsG0280006293.01.T01:CDS | 30.0% |
| ! | CTTGGTTTATCTGTTTTATC+TGG | + | Chr2:109252-109271 | MsG0280006293.01.T01:CDS | 30.0% |
| ! | TCATCTTATTTGTAATCTGG+TGG | + | Chr2:108698-108717 | MsG0280006293.01.T01:CDS | 30.0% |
| ! | TTTTGTGTTTCCTTCCATTA+AGG | + | Chr2:109220-109239 | MsG0280006293.01.T01:CDS | 30.0% |
| !! | ATTATTTTACAAGCACAGCA+AGG | + | Chr2:109031-109050 | MsG0280006293.01.T01:CDS | 30.0% |
| !! | TCTTCAGCTTTTTGTCATTT+TGG | + | Chr2:108960-108979 | MsG0280006293.01.T01:CDS | 30.0% |
| !! | TTATTTTACAAGCACAGCAA+GGG | + | Chr2:109032-109051 | MsG0280006293.01.T01:CDS | 30.0% |
| !! | TTCCTTCCATTTTAAGTGAA+GGG | - | Chr2:108764-108783 | None:intergenic | 30.0% |
| !! | TTTCCTTCCATTTTAAGTGA+AGG | - | Chr2:108765-108784 | None:intergenic | 30.0% |
| !!! | TCAATTATTTTAGTGGTCCT+TGG | + | Chr2:108659-108678 | MsG0280006293.01.T01:CDS | 30.0% |
| AAGTAAAGGGTAAGTACACA+GGG | - | Chr2:109073-109092 | None:intergenic | 35.0% | |
| ACCTCAGTTAGACAAGAATA+AGG | + | Chr2:108987-109006 | MsG0280006293.01.T01:CDS | 35.0% | |
| AGAAGAACGGTACTAAGTAA+AGG | - | Chr2:109087-109106 | None:intergenic | 35.0% | |
| ATAATGTTGAGGAAAATGCC+CGG | + | Chr2:109487-109506 | MsG0280006293.01.T01:CDS | 35.0% | |
| CATTATCTTCCAAATGACTC+TGG | - | Chr2:109473-109492 | None:intergenic | 35.0% | |
| CCAAGAAAAAGAACCCTTAA+TGG | - | Chr2:109237-109256 | None:intergenic | 35.0% | |
| CCTCAGTTAGACAAGAATAA+GGG | + | Chr2:108988-109007 | MsG0280006293.01.T01:CDS | 35.0% | |
| CTGGAATTATGAGCAGAAAA+TGG | + | Chr2:108887-108906 | MsG0280006293.01.T01:CDS | 35.0% | |
| GAAAAAGAACCCTTAATGGA+AGG | - | Chr2:109233-109252 | None:intergenic | 35.0% | |
| GAAGAACGGTACTAAGTAAA+GGG | - | Chr2:109086-109105 | None:intergenic | 35.0% | |
| GCTGTGCTTGTAAAATAATG+CGG | - | Chr2:109030-109049 | None:intergenic | 35.0% | |
| GCTTCAAACATAAAATGCTC+AGG | - | Chr2:109279-109298 | None:intergenic | 35.0% | |
| TAAGTAAAGGGTAAGTACAC+AGG | - | Chr2:109074-109093 | None:intergenic | 35.0% | |
| TTACTTAGTACCGTTCTTCT+TGG | + | Chr2:109087-109106 | MsG0280006293.01.T01:CDS | 35.0% | |
| TTGCACTTGTATGTTGTTCT+GGG | + | Chr2:109319-109338 | MsG0280006293.01.T01:CDS | 35.0% | |
| ! | AAGTCAGGATAATGGCAAAA+AGG | - | Chr2:109113-109132 | None:intergenic | 35.0% |
| ! | CCATTAAGGGTTCTTTTTCT+TGG | + | Chr2:109234-109253 | MsG0280006293.01.T01:CDS | 35.0% |
| ! | GTCAATTTCTTTTCGGACAA+TGG | + | Chr2:109551-109570 | MsG0280006293.01.T01:CDS | 35.0% |
| ! | TATTTTACAAGCACAGCAAG+GGG | + | Chr2:109033-109052 | MsG0280006293.01.T01:CDS | 35.0% |
| ! | TCTTTTCGGACAATGGAAAA+GGG | + | Chr2:109558-109577 | MsG0280006293.01.T01:CDS | 35.0% |
| ! | TTCTTTTCGGACAATGGAAA+AGG | + | Chr2:109557-109576 | MsG0280006293.01.T01:CDS | 35.0% |
| !!! | CAGCTTTTTGTCATTTTGGT+TGG | + | Chr2:108964-108983 | MsG0280006293.01.T01:CDS | 35.0% |
| !!! | GTAGCCATTTTGATTCTTCT+TGG | + | Chr2:108571-108590 | MsG0280006293.01.T01:CDS | 35.0% |
| !!! | GTTTGAAGCCTTTGTTTTCT+TGG | + | Chr2:109290-109309 | MsG0280006293.01.T01:CDS | 35.0% |
| AAGGTAGGAAGTCAGGATAA+TGG | - | Chr2:109121-109140 | None:intergenic | 40.0% | |
| AATGACTCTGGCTAGTGATA+AGG | - | Chr2:109461-109480 | None:intergenic | 40.0% | |
| ACTACCAAGCCAAAAAAGGT+AGG | - | Chr2:109136-109155 | None:intergenic | 40.0% | |
| AGAGCTAAACAATCTGCAAC+TGG | - | Chr2:109372-109391 | None:intergenic | 40.0% | |
| ATCTACAAGACTTGGAAGCT+AGG | + | Chr2:109397-109416 | MsG0280006293.01.T01:CDS | 40.0% | |
| ATGACTCTGGCTAGTGATAA+GGG | - | Chr2:109460-109479 | None:intergenic | 40.0% | |
| ATGGCACAATAACTTGGGTT+GGG | - | Chr2:109686-109705 | None:intergenic | 40.0% | |
| CAGATGAATCAACAAAGCGT+GGG | + | Chr2:109529-109548 | MsG0280006293.01.T01:CDS | 40.0% | |
| CCCTTATTCTTGTCTAACTG+AGG | - | Chr2:108991-109010 | None:intergenic | 40.0% | |
| CTAAACAATCTGCAACTGGA+CGG | - | Chr2:109368-109387 | None:intergenic | 40.0% | |
| CTTGATTATGGATTCGAGAG+CGG | - | Chr2:108627-108646 | None:intergenic | 40.0% | |
| CTTGCACTTGTATGTTGTTC+TGG | + | Chr2:109318-109337 | MsG0280006293.01.T01:CDS | 40.0% | |
| GAAATACAAGTGTGAGGAAG+AGG | - | Chr2:108837-108856 | None:intergenic | 40.0% | |
| GATTCATCTGAATACCTACC+AGG | - | Chr2:109519-109538 | None:intergenic | 40.0% | |
| GCTGAAGAAGAAACATTGGA+AGG | - | Chr2:108948-108967 | None:intergenic | 40.0% | |
| GGGGTCTAGGTGAAATTATT+AGG | + | Chr2:108719-108738 | MsG0280006293.01.T01:CDS | 40.0% | |
| TATCACTAGCCAGAGTCATT+TGG | + | Chr2:109461-109480 | MsG0280006293.01.T01:CDS | 40.0% | |
| TATGGCACAATAACTTGGGT+TGG | - | Chr2:109687-109706 | None:intergenic | 40.0% | |
| TCAGATGAATCAACAAAGCG+TGG | + | Chr2:109528-109547 | MsG0280006293.01.T01:CDS | 40.0% | |
| TCTGGGAAATCTACAAGACT+TGG | + | Chr2:109389-109408 | MsG0280006293.01.T01:CDS | 40.0% | |
| TGCCCTTCACTTAAAATGGA+AGG | + | Chr2:108759-108778 | MsG0280006293.01.T01:CDS | 40.0% | |
| ! | AGCGTGGGTCAATTTCTTTT+CGG | + | Chr2:109544-109563 | MsG0280006293.01.T01:CDS | 40.0% |
| ! | AGTTGCAGATTGTTTAGCTC+TGG | + | Chr2:109371-109390 | MsG0280006293.01.T01:CDS | 40.0% |
| ! | ATTTTACAAGCACAGCAAGG+GGG | + | Chr2:109034-109053 | MsG0280006293.01.T01:CDS | 40.0% |
| !! | GTTGCAGATTGTTTAGCTCT+GGG | + | Chr2:109372-109391 | MsG0280006293.01.T01:CDS | 40.0% |
| !!! | ACCTTTTTTGGCTTGGTAGT+CGG | + | Chr2:109136-109155 | MsG0280006293.01.T01:CDS | 40.0% |
| !!! | ACTTCCTACCTTTTTTGGCT+TGG | + | Chr2:109129-109148 | MsG0280006293.01.T01:CDS | 40.0% |
| !!! | TCCTGACTTCCTACCTTTTT+TGG | + | Chr2:109124-109143 | MsG0280006293.01.T01:CDS | 40.0% |
| AAGACTTGGAAGCTAGGACT+AGG | + | Chr2:109403-109422 | MsG0280006293.01.T01:CDS | 45.0% | |
| AATACCTACCAGGACTAAGC+CGG | - | Chr2:109509-109528 | None:intergenic | 45.0% | |
| AGGTTCTGCAAATCCCATGT+TGG | - | Chr2:108812-108831 | None:intergenic | 45.0% | |
| CGCTCTCGAATCCATAATCA+AGG | + | Chr2:108625-108644 | MsG0280006293.01.T01:CDS | 45.0% | |
| GACGTGCCCTTCACTTAAAA+TGG | + | Chr2:108755-108774 | MsG0280006293.01.T01:CDS | 45.0% | |
| GCCAAAAAAGGTAGGAAGTC+AGG | - | Chr2:109128-109147 | None:intergenic | 45.0% | |
| GGAGGAGAAATACAAGTGTG+AGG | - | Chr2:108843-108862 | None:intergenic | 45.0% | |
| GGCAAAAAGGCCAAGAAGAA+CGG | - | Chr2:109100-109119 | None:intergenic | 45.0% | |
| TCCGACTACCAAGCCAAAAA+AGG | - | Chr2:109140-109159 | None:intergenic | 45.0% | |
| TTTGTAATCTGGTGGGGTCT+AGG | + | Chr2:108706-108725 | MsG0280006293.01.T01:CDS | 45.0% | |
| ! | TGGCACAATAACTTGGGTTG+GGG | - | Chr2:109685-109704 | None:intergenic | 45.0% |
| !! | AGATTTGCTGCCGAAGCATT+CGG | + | Chr2:108529-108548 | MsG0280006293.01.T01:CDS | 45.0% |
| !! | GAAAAGGGTGTTGCTTCAAC+TGG | + | Chr2:109573-109592 | MsG0280006293.01.T01:CDS | 45.0% |
| ACAAGTGTGAGGAAGAGGCA+AGG | - | Chr2:108832-108851 | None:intergenic | 50.0% | |
| ACTTGGAAGCTAGGACTAGG+AGG | + | Chr2:109406-109425 | MsG0280006293.01.T01:CDS | 50.0% | |
| ATACCTACCAGGACTAAGCC+GGG | - | Chr2:109508-109527 | None:intergenic | 50.0% | |
| GAATGCTTCGGCAGCAAATC+TGG | - | Chr2:108530-108549 | None:intergenic | 50.0% | |
| TGTCACCACACCGAATGCTT+CGG | - | Chr2:108542-108561 | None:intergenic | 50.0% | |
| TTCGGCAGCAAATCTGGACA+GGG | - | Chr2:108524-108543 | None:intergenic | 50.0% | |
| !! | AACTTGGGTTGGGGATTGCA+TGG | - | Chr2:109676-109695 | None:intergenic | 50.0% |
| !! | ACTTGGGTTGGGGATTGCAT+GGG | - | Chr2:109675-109694 | None:intergenic | 50.0% |
| ACCTGGAAGTGACGGTGATC+CGG | - | Chr2:109649-109668 | None:intergenic | 55.0% | |
| ATGGGCCAACCTGGAAGTGA+CGG | - | Chr2:109657-109676 | None:intergenic | 55.0% | |
| CACTACGGCTGGGAGAGAAA+AGG | - | Chr2:109617-109636 | None:intergenic | 55.0% | |
| CCAGTCTCCAACCTCTGCAA+GGG | - | Chr2:108871-108890 | None:intergenic | 55.0% | |
| CTTCGGCAGCAAATCTGGAC+AGG | - | Chr2:108525-108544 | None:intergenic | 55.0% | |
| GAAAATGCCCGGCTTAGTCC+TGG | + | Chr2:109498-109517 | MsG0280006293.01.T01:CDS | 55.0% | |
| GATCACCGTCACTTCCAGGT+TGG | + | Chr2:109649-109668 | MsG0280006293.01.T01:CDS | 55.0% | |
| TCCAGTCTCCAACCTCTGCA+AGG | - | Chr2:108872-108891 | None:intergenic | 55.0% | |
| TCGGCAGCAAATCTGGACAG+GGG | - | Chr2:108523-108542 | None:intergenic | 55.0% | |
| !! | ATCCGGGTGGTGTTGCACTA+CGG | - | Chr2:109632-109651 | None:intergenic | 55.0% |
| AGCCGTAGTGCAACACCACC+CGG | + | Chr2:109627-109646 | MsG0280006293.01.T01:CDS | 60.0% | |
| ATGCCCGGCTTAGTCCTGGT+AGG | + | Chr2:109502-109521 | MsG0280006293.01.T01:CDS | 60.0% | |
| CCCTTGCAGAGGTTGGAGAC+TGG | + | Chr2:108868-108887 | MsG0280006293.01.T01:CDS | 60.0% | |
| CCTGGAAGTGACGGTGATCC+GGG | - | Chr2:109648-109667 | None:intergenic | 60.0% | |
| ! | CCAACCTCTGCAAGGGTGCA+CGG | - | Chr2:108864-108883 | None:intergenic | 60.0% |
| ! | TGCTGCCGAAGCATTCGGTG+TGG | + | Chr2:108534-108553 | MsG0280006293.01.T01:CDS | 60.0% |
| !! | GGTGGTGTTGCACTACGGCT+GGG | - | Chr2:109627-109646 | None:intergenic | 60.0% |
| CCCGGATCACCGTCACTTCC+AGG | + | Chr2:109645-109664 | MsG0280006293.01.T01:CDS | 65.0% | |
| CCGTGCACCCTTGCAGAGGT+TGG | + | Chr2:108861-108880 | MsG0280006293.01.T01:CDS | 65.0% | |
| GGAAGTGACGGTGATCCGGG+TGG | - | Chr2:109645-109664 | None:intergenic | 65.0% | |
| GGGGATTGCATGGGCCAACC+TGG | - | Chr2:109666-109685 | None:intergenic | 65.0% | |
| TCCTCCGTGCACCCTTGCAG+AGG | + | Chr2:108857-108876 | MsG0280006293.01.T01:CDS | 65.0% | |
| ! | ACCTCTGCAAGGGTGCACGG+AGG | - | Chr2:108861-108880 | None:intergenic | 65.0% |
| !! | GGGTGGTGTTGCACTACGGC+TGG | - | Chr2:109628-109647 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 108517 | 109707 | 108517 | ID=MsG0280006293.01;Name=MsG0280006293.01 |
| Chr2 | mRNA | 108517 | 109707 | 108517 | ID=MsG0280006293.01.T01;Parent=MsG0280006293.01;Name=MsG0280006293.01.T01;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|396 |
| Chr2 | exon | 108517 | 109707 | 108517 | ID=MsG0280006293.01.T01:exon:436;Parent=MsG0280006293.01.T01 |
| Chr2 | CDS | 108517 | 109707 | 108517 | ID=MsG0280006293.01.T01:cds;Parent=MsG0280006293.01.T01 |
| Gene Sequence |
| Protein sequence |
