AlfalfaGEDB | MsG0580024080.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024080.01

KEGG: -
GO: -
PFAM: PF06219

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024080.01.T01	RHN53256.1	99.522	209	1	0	1	209	272	480	1.01E-148	432

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024080.01.T01	A0A396HJ24	99.522	209	1	0	1	209	272	480	4.85e-149	432

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005199.01	MsG0580024080.01	0.868912	4.588090e-66	1.688598e-62
MsG0280006293.01	MsG0580024080.01	0.835296	1.822737e-56	2.219770e-53
MsG0480021652.01	MsG0580024080.01	0.805580	1.246315e-49	6.617751e-47
MsG0480021859.01	MsG0580024080.01	0.833429	5.359814e-56	6.170899e-53
MsG0580024079.01	MsG0580024080.01	0.816126	6.492196e-52	4.561220e-49
MsG0580024080.01	MsG0780039440.01	0.846291	2.382169e-59	4.080425e-56
MsG0580024080.01	MsG0880047123.01	0.808641	2.803443e-50	1.611352e-47

Showing 1 to 7 of 7 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024080.01.T01	MTR_5g005420	99.522	209	1	0	1	209	209	417	2.28e-152	429
MsG0580024080.01.T01	MTR_3g110630	56.332	229	64	4	2	209	235	448	1.16e-68	217
MsG0580024080.01.T01	MTR_6g090060	52.885	208	71	5	2	207	232	414	6.10e-64	204
MsG0580024080.01.T01	MTR_8g009770	45.662	219	90	5	2	208	229	430	2.10e-49	166
MsG0580024080.01.T01	MTR_8g102270	48.039	204	65	6	13	207	183	354	3.38e-48	161

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024080.01.T01	AT3G19680	62.882	229	59	5	2	209	261	484	2.63e-78	243
MsG0580024080.01.T01	AT1G50040	63.426	216	70	4	2	209	239	453	5.98e-68	215
MsG0580024080.01.T01	AT4G29310	52.381	210	71	4	2	207	231	415	3.04e-63	202
MsG0580024080.01.T01	AT1G10020	53.153	222	87	5	2	207	235	455	6.61e-62	199
MsG0580024080.01.T01	AT5G17640	48.293	205	82	5	2	197	228	417	6.75e-46	157
MsG0580024080.01.T01	AT4G29310	67.901	81	24	1	2	80	231	311	4.85e-33	121

Showing 1 to 6 of 6 entries

Previous1Next

Find 66 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTAGTAAACCGGAGG+TGG	0.509798	5:+567367	MsG0580024080.01.T01:CDS
AACCCGATGGTGATGGTACT+TGG	0.396043	5:+567033	MsG0580024080.01.T01:CDS
AACGTCGAACCGGTATCCAA+CGG	0.651013	5:-567105	None:intergenic
ACACCGTTCGTTCCTTCACC+TGG	0.465337	5:+566963	MsG0580024080.01.T01:CDS
ACACGATTTATCCGGTTCAC+CGG	0.530542	5:+566920	MsG0580024080.01.T01:CDS
ACCATTGAAGCACACGCAAC+CGG	0.440718	5:-566939	None:intergenic
ACCGGTTGCGTGTGCTTCAA+TGG	0.380208	5:+566938	MsG0580024080.01.T01:CDS
ACCTGTTGTGAACCAGGTGA+AGG	0.654247	5:-566975	None:intergenic
ACTCAAACTCCGTTGGATAC+CGG	0.505974	5:+567096	MsG0580024080.01.T01:CDS
ACTCCCGTTAACACTCCAAA+CGG	0.562154	5:+567221	MsG0580024080.01.T01:CDS

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTACGATACACGATTTATC+CGG	+	Chr5:566912-566931	MsG0580024080.01.T01:CDS	30.0%
CTCCAATGAAAAATCTGAAC+CGG	-	Chr5:567294-567313	None:intergenic	35.0%
TGATAATTAACCAAGCACCT+GGG	-	Chr5:567013-567032	None:intergenic	35.0%
TGGTTAATTATCAAACCCGA+TGG	+	Chr5:567020-567039	MsG0580024080.01.T01:CDS	35.0%
AGCTGCTATGGATTTGAGTA+TGG	+	Chr5:567448-567467	MsG0580024080.01.T01:CDS	40.0%
AGTATCAGTTCACAGAATGG+TGG	+	Chr5:567167-567186	MsG0580024080.01.T01:CDS	40.0%
ATTATCAAACCCGATGGTGA+TGG	+	Chr5:567026-567045	MsG0580024080.01.T01:CDS	40.0%
TGATGGTACTTGGAAACCAT+GGG	+	Chr5:567043-567062	MsG0580024080.01.T01:CDS	40.0%
TGCAGTATCAGTTCACAGAA+TGG	+	Chr5:567164-567183	MsG0580024080.01.T01:CDS	40.0%
TTTCCAAGTACCATCACCAT+CGG	-	Chr5:567039-567058	None:intergenic	40.0%

Showing 1 to 10 of 70 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	566891	567520	566891	ID=MsG0580024080.01;Name=MsG0580024080.01
Chr5	mRNA	566891	567520	566891	ID=MsG0580024080.01.T01;Parent=MsG0580024080.01;Name=MsG0580024080.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|209
Chr5	exon	566891	567520	566891	ID=MsG0580024080.01.T01:exon:168;Parent=MsG0580024080.01.T01
Chr5	CDS	566891	567520	566891	ID=MsG0580024080.01.T01:cds;Parent=MsG0580024080.01.T01

Gene Sequence

>MsG0580024080.01.T01

ATGGATAGAAAAGGTTGGTCTATTACGATACACGATTTATCCGGTTCACCGGTTGCGTGTGCTTCAATGGTTACACCGTTCGTTCCTTCACCTGGTTCACAACAGGTCAGTAAATCAAACCCAGGTGCTTGGTTAATTATCAAACCCGATGGTGATGGTACTTGGAAACCATGGGGTCGACTCGAAGCTTGGCGTGAACCCGGTTACTCAAACTCCGTTGGATACCGGTTCGACGTTCTTCCGGCCACCGCTGATCCAGTCACACTCGCCGGTTGCAGTATCAGTTCACAGAATGGTGGTAAATTTACAATTGATGTAACATCAGGTGTTACTCCCGTTAACACTCCAAACGGAAGCTGGGATTTAGGATCCGGTTCAGGATCAAGACCCGGGTCTGGTTCCGGTTCAGATTTTTCATTGGAGAATCAGTTTTTGTATAGCGGTTTTGTGATGTCGGCGAGATTTGACGGTGAAAAAAAGTGTAGTAAACCGGAGGTGGAAGTTGGTGTGAAGCACGTGACATGCACGGAAGATGCTGCAGCTTTTGTTGCTCTTGCAGCTGCTATGGATTTGAGTATGGATGCGTGCAAATTGTTTTCTCAGAAATTACGAAAAGAGTTGCGCCAGTAA

Protein sequence

>MsG0580024080.01.T01

MDRKGWSITIHDLSGSPVACASMVTPFVPSPGSQQVSKSNPGAWLIIKPDGDGTWKPWGRLEAWREPGYSNSVGYRFDVLPATADPVTLAGCSISSQNGGKFTIDVTSGVTPVNTPNGSWDLGSGSGSRPGSGSGSDFSLENQFLYSGFVMSARFDGEKKCSKPEVEVGVKHVTCTEDAAAFVALAAAMDLSMDACKLFSQKLRKELRQ*