AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005199.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005199.01.T01 MTR_1g094930 99.094 331 3 0 1 331 1 331 0.0 675
MsG0180005199.01.T01 MTR_1g094930 99.153 236 2 0 96 331 1 236 2.08e-174 483
MsG0180005199.01.T01 MTR_1g116010 55.814 258 78 10 74 329 22 245 7.38e-74 228
MsG0180005199.01.T01 MTR_2g094600 46.774 186 70 6 121 306 124 280 5.26e-43 150
MsG0180005199.01.T01 MTR_1g006650 34.783 322 133 11 9 306 30 298 4.82e-38 139
MsG0180005199.01.T01 MTR_3g109760 34.228 298 134 8 17 306 28 271 1.39e-36 134
MsG0180005199.01.T01 MTR_7g085410 35.938 256 129 6 58 306 25 252 3.95e-35 129
MsG0180005199.01.T01 MTR_4g058910 64.894 94 28 1 238 331 310 398 4.01e-35 132
MsG0180005199.01.T01 MTR_4g071590 57.692 104 33 2 203 306 183 275 1.88e-34 128
MsG0180005199.01.T01 MTR_4g471590 57.692 104 33 2 203 306 183 275 1.88e-34 128
MsG0180005199.01.T01 MTR_6g032830 36.015 261 122 9 67 308 24 258 2.05e-34 127
MsG0180005199.01.T01 MTR_5g021340 35.766 274 121 10 48 308 135 366 9.92e-34 128
MsG0180005199.01.T01 MTR_3g117380 72.603 73 19 1 234 306 222 293 6.65e-33 124
MsG0180005199.01.T01 MTR_8g013950 81.538 65 12 0 242 306 226 290 9.67e-33 124
MsG0180005199.01.T01 MTR_5g007600 55.238 105 45 2 203 306 220 323 1.68e-31 120
MsG0180005199.01.T01 MTR_5g007600 54.000 100 44 2 207 305 122 220 2.15e-28 112
MsG0180005199.01.T01 MTR_8g076340 62.366 93 26 3 216 308 201 284 2.01e-31 119
MsG0180005199.01.T01 MTR_1g046680 80.000 65 13 0 242 306 172 236 2.19e-31 118
MsG0180005199.01.T01 MTR_7g446110 61.290 62 24 0 242 303 187 248 1.44e-20 89.7
MsG0180005199.01.T01 MTR_7g445950 58.065 62 26 0 242 303 120 181 2.65e-19 84.3
MsG0180005199.01.T01 MTR_7g445980 61.667 60 22 1 246 304 37 96 7.36e-19 80.9
MsG0180005199.01.T01 MTR_7g446070 36.567 134 65 2 175 303 75 193 8.13e-19 83.6
MsG0180005199.01.T01 MTR_7g106090 55.844 77 33 1 177 253 36 111 7.49e-17 75.9
MsG0180005199.01.T01 MTR_5g020230 52.083 48 23 0 227 274 107 154 3.06e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005199.01.T01 AT1G08010 40.254 236 111 5 85 318 89 296 2.97e-42 149
MsG0180005199.01.T01 AT1G08010 40.254 236 111 5 85 318 89 296 2.97e-42 149
MsG0180005199.01.T01 AT1G08010 40.254 236 111 5 85 318 89 296 2.97e-42 149
MsG0180005199.01.T01 AT3G54810 71.875 96 20 2 240 328 227 322 3.17e-42 149
MsG0180005199.01.T01 AT3G54810 71.875 96 20 2 240 328 227 322 3.17e-42 149
MsG0180005199.01.T01 AT5G25830 40.249 241 113 8 67 306 73 283 7.01e-38 138
MsG0180005199.01.T01 AT1G08000 42.051 195 88 3 115 309 116 285 3.08e-37 135
MsG0180005199.01.T01 AT1G08000 42.051 195 88 3 115 309 116 285 3.08e-37 135
MsG0180005199.01.T01 AT4G32890 34.641 306 120 12 17 306 20 261 7.67e-37 134
MsG0180005199.01.T01 AT5G66320 38.636 264 123 9 55 315 95 322 2.57e-36 134
MsG0180005199.01.T01 AT5G66320 38.636 264 123 9 55 315 95 322 2.57e-36 134
MsG0180005199.01.T01 AT3G24050 78.462 65 14 0 242 306 194 258 1.06e-31 120
MsG0180005199.01.T01 AT3G51080 71.053 76 21 1 242 317 221 295 1.12e-31 121
MsG0180005199.01.T01 AT4G36240 54.545 99 43 1 208 306 132 228 3.15e-31 118
MsG0180005199.01.T01 AT3G60530 74.242 66 17 0 241 306 157 222 9.99e-31 116
MsG0180005199.01.T01 AT2G28340 65.333 75 26 0 244 318 193 267 1.33e-30 117
MsG0180005199.01.T01 AT2G45050 72.727 66 18 0 241 306 178 243 3.28e-30 115
MsG0180005199.01.T01 AT4G34680 63.158 76 28 0 242 317 180 255 5.88e-29 112
MsG0180005199.01.T01 AT4G34680 63.158 76 28 0 242 317 180 255 5.88e-29 112
MsG0180005199.01.T01 AT3G45170 40.000 140 79 3 168 306 44 179 4.77e-28 108
MsG0180005199.01.T01 AT5G26930 54.545 44 18 1 234 277 20 61 4.93e-11 59.7

Find 131 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGGTGAAATTGAAATTA+AGG 0.183082 1:-88374852 None:intergenic
CTAGCAGCAGGCCGGTATTC+GGG 0.281895 1:-88378566 None:intergenic
ACAACTCGTTGGCGAGTATC+TGG 0.294745 1:+88376064 MsG0180005199.01.T01:CDS
AAATGAATCGTCCACAATAT+TGG 0.301923 1:-88377973 None:intergenic
AATAAACTAAGCTTAGTTTC+AGG 0.316869 1:+88374874 MsG0180005199.01.T01:five_prime_UTR
GTTCGAAGATCTTCTTTCAT+TGG 0.321117 1:+88377941 MsG0180005199.01.T01:intron
CTGCTTTCAAGGACAGAAAT+AGG 0.322926 1:-88378092 None:intergenic
TTGACTTGCAGAGAAGAAAA+TGG 0.332195 1:+88375927 MsG0180005199.01.T01:intron
GTCTCTCCAGAAGAGAGCTT+TGG 0.342561 1:-88378350 None:intergenic
CAATGCATGCATTTCCTAAC+AGG 0.350621 1:-88378446 None:intergenic
ACAGAAGGAAAGGGAAGAAA+AGG 0.361946 1:+88378865 MsG0180005199.01.T01:three_prime_UTR
CGTCCGCAAGGCACCGGAAT+GGG 0.362306 1:-88378155 None:intergenic
ACTAGCAGCAGGCCGGTATT+CGG 0.363594 1:-88378567 None:intergenic
TCTCTACTCACCGGATCAAC+GGG 0.368770 1:-88376147 None:intergenic
GAAGAAAAGGGTAGGATCTT+AGG 0.378964 1:+88378878 MsG0180005199.01.T01:three_prime_UTR
GGCTGTGGGGCGTGGACGCT+TGG 0.384746 1:-88378186 None:intergenic
AAGGCGAGAACATTGGTGTT+TGG 0.385415 1:-88378686 None:intergenic
TATCCTTGCATCTCATTTCA+AGG 0.385918 1:-88378634 None:intergenic
CAATGGAGGGCAGGTCCAAT+GGG 0.390212 1:+88378488 MsG0180005199.01.T01:CDS
AGCAGGAACTACTGCTTTCA+AGG 0.398558 1:-88378103 None:intergenic
GCACTCCAATTCGCACAAAA+AGG 0.399415 1:+88378610 MsG0180005199.01.T01:CDS
AACTAAGCTTAGTTTATTTG+AGG 0.403480 1:-88374869 None:intergenic
ACAATGGAGGGCAGGTCCAA+TGG 0.404651 1:+88378487 MsG0180005199.01.T01:CDS
CCTTGGAATACAACATTTGA+AGG 0.412271 1:+88378705 MsG0180005199.01.T01:CDS
TTGGTTTCTTGACAATAATC+CGG 0.416836 1:-88378331 None:intergenic
GGGTTGAAGGCTGTGGGGCG+TGG 0.418136 1:-88378194 None:intergenic
TGCCCTCCATTGTGGAGTCT+TGG 0.422561 1:-88378477 None:intergenic
AAGAAACCAAAGCTCTCTTC+TGG 0.429167 1:+88378344 MsG0180005199.01.T01:CDS
TGAGAAGAGAATGGTAGAAA+AGG 0.440839 1:-88374820 None:intergenic
CCCTACTTCCTCTTCTGTTG+AGG 0.447338 1:+88378241 MsG0180005199.01.T01:CDS
TTCTGTTCGCCACTGTCAGC+TGG 0.447903 1:-88378413 None:intergenic
AGAATGGTTCACTACCTGTT+AGG 0.449879 1:+88378432 MsG0180005199.01.T01:CDS
GCTGTCAGCAAGGAGGACTC+TGG 0.452116 1:+88378044 MsG0180005199.01.T01:CDS
ATCTGAAGAAAGCGCCTTGG+TGG 0.456913 1:-88378288 None:intergenic
TGCGAATTGGAGTGCACAGC+TGG 0.458877 1:-88378602 None:intergenic
AGGGCTGGAATGGGGAGAAT+AGG 0.459690 1:+88378833 MsG0180005199.01.T01:three_prime_UTR
ATTAATAGAACAGAAGGAAA+GGG 0.461623 1:+88378856 MsG0180005199.01.T01:three_prime_UTR
GGCGGAGCTCCCCGTTGATC+CGG 0.465097 1:+88376137 MsG0180005199.01.T01:CDS
TGGTTTCTTGACAATAATCC+GGG 0.466726 1:-88378330 None:intergenic
TGAAGGGAACTGAGCCTAGT+TGG 0.467108 1:+88378722 MsG0180005199.01.T01:exon
CAGAAGGAAAGGGAAGAAAA+GGG 0.470054 1:+88378866 MsG0180005199.01.T01:three_prime_UTR
TGCTCTGGTGGAAAGACCAC+AGG 0.471537 1:+88378122 MsG0180005199.01.T01:CDS
TGCGGTGTACGCTACAAGTC+GGG 0.473402 1:+88378533 MsG0180005199.01.T01:CDS
GCGGTGTCAACGTCGTCGAC+GGG 0.476293 1:-88376009 None:intergenic
TGGAGTGAGTTATTTGAAAG+AGG 0.480052 1:-88374764 None:intergenic
CCTTCAAATGTTGTATTCCA+AGG 0.482354 1:-88378705 None:intergenic
AGCGGTGTCAACGTCGTCGA+CGG 0.482359 1:-88376010 None:intergenic
GTTGTAGTTTGCCGCGGAGG+AGG 0.484221 1:-88376046 None:intergenic
GCCGACTATTCCCCGAATAC+CGG 0.484840 1:+88378555 MsG0180005199.01.T01:CDS
CTCTCTACTCACCGGATCAA+CGG 0.485631 1:-88376148 None:intergenic
AGATCTTCTTTCATTGGAGT+GGG 0.485791 1:+88377947 MsG0180005199.01.T01:CDS
AAGATCTTCTTTCATTGGAG+TGG 0.486353 1:+88377946 MsG0180005199.01.T01:CDS
CCTCAACAGAAGAGGAAGTA+GGG 0.487341 1:-88378241 None:intergenic
AATAGGATTAATAGAACAGA+AGG 0.488681 1:+88378850 MsG0180005199.01.T01:three_prime_UTR
AGAACGAGGGTTGAAGGCTG+TGG 0.494477 1:-88378201 None:intergenic
AGTTATTTGAAAGAGGAAAG+AGG 0.495306 1:-88374757 None:intergenic
AAACACCAATGTTCTCGCCT+TGG 0.495323 1:+88378688 MsG0180005199.01.T01:CDS
CATAGCAGAACGAGGGTTGA+AGG 0.496157 1:-88378207 None:intergenic
CGTGCACGTCCGCAAGGCAC+CGG 0.497396 1:-88378161 None:intergenic
GAGAGAGGGGAATAGTGTGT+TGG 0.502989 1:-88374784 None:intergenic
AGGGATTTACGTCCCCATTC+CGG 0.508516 1:+88378142 MsG0180005199.01.T01:CDS
GCCTTGGTGGAGATAACATT+AGG 0.511767 1:-88378275 None:intergenic
GAAAGCAGTAGTTCCTGCTC+TGG 0.513297 1:+88378107 MsG0180005199.01.T01:CDS
TGTGGTCTTTCCACCAGAGC+AGG 0.513350 1:-88378120 None:intergenic
GATTAATAGAACAGAAGGAA+AGG 0.514944 1:+88378855 MsG0180005199.01.T01:three_prime_UTR
GAACGAGGGTTGAAGGCTGT+GGG 0.515671 1:-88378200 None:intergenic
TTTAGATCACTTAGGTCGGT+AGG 0.519782 1:+88378910 MsG0180005199.01.T01:three_prime_UTR
AAAGAGTAGTGAGAAGAGAA+TGG 0.524359 1:-88374829 None:intergenic
ATTGGACCTGCCCTCCATTG+TGG 0.524395 1:-88378485 None:intergenic
GGAGGGCAATGAAGCGGCAG+CGG 0.526729 1:-88376028 None:intergenic
GCCGGTATTCGGGGAATAGT+CGG 0.526797 1:-88378556 None:intergenic
CGCGGAGGAGGGCAATGAAG+CGG 0.533925 1:-88376034 None:intergenic
TCAAGGACAGAAATAGGACT+TGG 0.539012 1:-88378086 None:intergenic
CTTGCAGAGAAGAAAATGGC+TGG 0.540090 1:+88375931 MsG0180005199.01.T01:intron
GTCCGCAAGGCACCGGAATG+GGG 0.540180 1:-88378154 None:intergenic
TTGCTGACAGCTGATGATGA+TGG 0.540546 1:-88378032 None:intergenic
CTGTCAGCAAGGAGGACTCT+GGG 0.542617 1:+88378045 MsG0180005199.01.T01:CDS
AGCAGTAGTTCCTGCTCTGG+TGG 0.543729 1:+88378110 MsG0180005199.01.T01:CDS
TTGTAGTTTGCCGCGGAGGA+GGG 0.553031 1:-88376045 None:intergenic
CAATAGTACTTCAGACCTCT+CGG 0.555740 1:+88376116 MsG0180005199.01.T01:CDS
TTGGTGCGTGCACGTCCGCA+AGG 0.556777 1:-88378167 None:intergenic
TAGCAGCAGGCCGGTATTCG+GGG 0.557503 1:-88378565 None:intergenic
CATGTTCTCCTCAACAGAAG+AGG 0.558411 1:-88378249 None:intergenic
ACGTCCGCAAGGCACCGGAA+TGG 0.559647 1:-88378156 None:intergenic
TTTATAATATCCATATCCAT+GGG 0.561480 1:+88378961 MsG0180005199.01.T01:three_prime_UTR
AAAATCTGAAGAAAGCGCCT+TGG 0.566825 1:-88378291 None:intergenic
CGAGTTGTAGTTTGCCGCGG+AGG 0.567794 1:-88376049 None:intergenic
TCAGCTGGAGCAGTAGGAAG+TGG 0.567950 1:-88378398 None:intergenic
CCACTGTCAGCTGGAGCAGT+AGG 0.567950 1:-88378404 None:intergenic
GGAGAGTCTCACAATGAAAG+TGG 0.570456 1:+88378001 MsG0180005199.01.T01:CDS
ATACGACGCGACTCTAGATA+AGG 0.574384 1:-88378762 None:intergenic
AACACCGAGTCAGACTCATT+CGG 0.575075 1:-88376087 None:intergenic
TCCTCAACAGAAGAGGAAGT+AGG 0.578279 1:-88378242 None:intergenic
CGCGGCAAACTACAACTCGT+TGG 0.579753 1:+88376053 MsG0180005199.01.T01:CDS
AACCAAGACTCCACAATGGA+GGG 0.579995 1:+88378475 MsG0180005199.01.T01:CDS
AAGACTCCACAATGGAGGGC+AGG 0.580027 1:+88378479 MsG0180005199.01.T01:CDS
CAAAACGTTGGACTAGCAGC+AGG 0.583276 1:-88378578 None:intergenic
GTCCCCATTCCGGTGCCTTG+CGG 0.585255 1:+88378152 MsG0180005199.01.T01:CDS
GCTGACAGTGGCGAACAGAA+TGG 0.590330 1:+88378416 MsG0180005199.01.T01:CDS
TTGCGGTGTACGCTACAAGT+CGG 0.591752 1:+88378532 MsG0180005199.01.T01:CDS
GTATTCCAAGGCGAGAACAT+TGG 0.594504 1:-88378693 None:intergenic
AAAACACTCTGCAATGCTTG+CGG 0.597816 1:+88378515 MsG0180005199.01.T01:CDS
CTGGCCGAATGAGTCTGACT+CGG 0.600304 1:+88376083 MsG0180005199.01.T01:CDS
ATCATCATCAGCTGTCAGCA+AGG 0.601103 1:+88378034 MsG0180005199.01.T01:CDS
CTTGGAATACAACATTTGAA+GGG 0.601413 1:+88378706 MsG0180005199.01.T01:exon
CGCTTCATTGCCCTCCTCCG+CGG 0.601691 1:+88376035 MsG0180005199.01.T01:CDS
CAACGAGTTGTAGTTTGCCG+CGG 0.602863 1:-88376052 None:intergenic
TGCACAGCTGGACAAAACGT+TGG 0.609672 1:-88378590 None:intergenic
GGAGAGAGAAATCTCCAACT+AGG 0.610583 1:-88378736 None:intergenic
GGTCCTTGAAATGAGATGCA+AGG 0.611789 1:+88378631 MsG0180005199.01.T01:CDS
AGGAAAGGGAAGAAAAGGGT+AGG 0.615212 1:+88378870 MsG0180005199.01.T01:three_prime_UTR
ACGTTGGACTAGCAGCAGGC+CGG 0.619617 1:-88378574 None:intergenic
CTCAACAGAAGAGGAAGTAG+GGG 0.627104 1:-88378240 None:intergenic
TAACCAAGACTCCACAATGG+AGG 0.629519 1:+88378474 MsG0180005199.01.T01:CDS
CGGTGTCAACGTCGTCGACG+GGG 0.629631 1:-88376008 None:intergenic
GCCTAATGTTATCTCCACCA+AGG 0.643801 1:+88378274 MsG0180005199.01.T01:CDS
TAATTTACTCAAATTCAACA+AGG 0.648312 1:+88375152 MsG0180005199.01.T01:five_prime_UTR
GCTCTGGTGGAAAGACCACA+GGG 0.652323 1:+88378123 MsG0180005199.01.T01:CDS
ATGAGTTGCATAGCAGAACG+AGG 0.660947 1:-88378215 None:intergenic
AACGAGGGTTGAAGGCTGTG+GGG 0.663882 1:-88378199 None:intergenic
ACGCGACTCTAGATAAGGCG+AGG 0.670462 1:-88378757 None:intergenic
AATGGAGGGCAGGTCCAATG+GGG 0.678887 1:+88378489 MsG0180005199.01.T01:CDS
CAACGGGGAGCTCCGCCGAG+AGG 0.679446 1:-88376131 None:intergenic
CCTACTGCTCCAGCTGACAG+TGG 0.685510 1:+88378404 MsG0180005199.01.T01:CDS
ATCATCAGCTGTCAGCAAGG+AGG 0.691864 1:+88378037 MsG0180005199.01.T01:CDS
GGAGTGGGTGTCCAATATTG+TGG 0.693703 1:+88377962 MsG0180005199.01.T01:CDS
TGAGTTGCATAGCAGAACGA+GGG 0.714987 1:-88378214 None:intergenic
AGATAACCAAGACTCCACAA+TGG 0.734467 1:+88378471 MsG0180005199.01.T01:CDS
CTCTACTCACCGGATCAACG+GGG 0.746525 1:-88376146 None:intergenic
AATGGGGACGTAAATCCCTG+TGG 0.749532 1:-88378138 None:intergenic
TAGTACTTCAGACCTCTCGG+CGG 0.759629 1:+88376119 MsG0180005199.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAACAAACA+TGG - Chr1:88377466-88377485 None:intergenic 10.0%
!! AAATAAAATAAAACAAACAT+GGG - Chr1:88377465-88377484 None:intergenic 10.0%
!! AATAAAAAAATTAAGCAAAA+TGG - Chr1:88375087-88375106 None:intergenic 10.0%
!! TCTACAAAAAAAAAATAATA+TGG - Chr1:88376861-88376880 None:intergenic 10.0%
!!! AACTTTACTTTATTTATTTT+TGG - Chr1:88377097-88377116 None:intergenic 10.0%
!!! AATATAAAGTATTTATAGAA+AGG + Chr1:88377223-88377242 MsG0180005199.01.T01:intron 10.0%
!!! ATATAAAGTATTTATAGAAA+GGG + Chr1:88377224-88377243 MsG0180005199.01.T01:intron 10.0%
!!! ATTATAAACAATTTTGATTT+TGG + Chr1:88375044-88375063 MsG0180005199.01.T01:intron 10.0%
!!! TATTTTTTTTTATCTAAAGA+AGG + Chr1:88375720-88375739 MsG0180005199.01.T01:intron 10.0%
!!! TTTTTTTATTTTTATTATGC+AGG + Chr1:88375097-88375116 MsG0180005199.01.T01:intron 10.0%
!! AAGAAAAAACGAAATTAAAT+AGG - Chr1:88375785-88375804 None:intergenic 15.0%
!! AGAAAAAACGAAATTAAATA+GGG - Chr1:88375784-88375803 None:intergenic 15.0%
!! TAAAAATTAACCTAAAAAAG+TGG - Chr1:88377000-88377019 None:intergenic 15.0%
!! TGTTTCAAAAGAAAAATATT+GGG + Chr1:88375468-88375487 MsG0180005199.01.T01:intron 15.0%
!! TTGTTTCAAAAGAAAAATAT+TGG + Chr1:88375467-88375486 MsG0180005199.01.T01:intron 15.0%
!!! AAGAGTAATATACTTTTTTT+TGG + Chr1:88377537-88377556 MsG0180005199.01.T01:intron 15.0%
!!! AAGTCATTTTAATATCTATT+TGG + Chr1:88375594-88375613 MsG0180005199.01.T01:intron 15.0%
!!! CAATTTGATTCTAAAATAAA+TGG + Chr1:88375292-88375311 MsG0180005199.01.T01:intron 15.0%
!!! TAATAAAGTTTTTTTTATCG+AGG + Chr1:88376809-88376828 MsG0180005199.01.T01:intron 15.0%
!!! TATAAGTTAGTAAAATCTTT+TGG - Chr1:88376791-88376810 None:intergenic 15.0%
!! AAAAATATAGAGTCAAAACA+TGG - Chr1:88376305-88376324 None:intergenic 20.0%
!! AATTGAGATAAAATTGAAGA+AGG - Chr1:88375186-88375205 None:intergenic 20.0%
!! AGATATTAAAATGACTTGAT+TGG - Chr1:88375591-88375610 None:intergenic 20.0%
!! ATAGTGCAAATATTCTAAAT+AGG - Chr1:88376275-88376294 None:intergenic 20.0%
!! ATTATTTGGATCATCATTAT+TGG + Chr1:88377342-88377361 MsG0180005199.01.T01:intron 20.0%
!! ATTGAGATAAAATTGAAGAA+GGG - Chr1:88375185-88375204 None:intergenic 20.0%
!! TAAATAATGAACCTTCAAAT+TGG + Chr1:88377417-88377436 MsG0180005199.01.T01:intron 20.0%
!! TAATTTACTCAAATTCAACA+AGG + Chr1:88375152-88375171 MsG0180005199.01.T01:five_prime_UTR 20.0%
!! TGAAGGTTCATTATTTATTT+AGG - Chr1:88377414-88377433 None:intergenic 20.0%
!! TTTATAATATCCATATCCAT+GGG + Chr1:88378961-88378980 MsG0180005199.01.T01:three_prime_UTR 20.0%
!!! GTCGAAAAATGATTTTTTTA+AGG + Chr1:88376909-88376928 MsG0180005199.01.T01:intron 20.0%
!!! TAAAGGAATTTTCTACTTTT+TGG - Chr1:88377150-88377169 None:intergenic 20.0%
!!! TGCTTACATTTTATTTTAGA+CGG + Chr1:88375394-88375413 MsG0180005199.01.T01:intron 20.0%
!!! TGGTTTTTCTTTTTTGATAA+AGG + Chr1:88376625-88376644 MsG0180005199.01.T01:intron 20.0%
!!! TTAAGTTTAAAATTGTGCAT+TGG + Chr1:88376439-88376458 MsG0180005199.01.T01:intron 20.0%
!!! TTGTTGAGTTTTATTTCTTT+TGG + Chr1:88378794-88378813 MsG0180005199.01.T01:three_prime_UTR 20.0%
!!! TTTTATAATATCCATATCCA+TGG + Chr1:88378960-88378979 MsG0180005199.01.T01:three_prime_UTR 20.0%
! AAAAACAAAACATGTGTGTA+TGG - Chr1:88377679-88377698 None:intergenic 25.0%
! AACTAAGCTTAGTTTATTTG+AGG - Chr1:88374872-88374891 None:intergenic 25.0%
! AATAAACTAAGCTTAGTTTC+AGG + Chr1:88374874-88374893 MsG0180005199.01.T01:five_prime_UTR 25.0%
! AATAGGATTAATAGAACAGA+AGG + Chr1:88378850-88378869 MsG0180005199.01.T01:three_prime_UTR 25.0%
! AATCACGATAAGTCAATAAA+AGG - Chr1:88376703-88376722 None:intergenic 25.0%
! AGGTTCATTATTTATTTAGG+TGG - Chr1:88377411-88377430 None:intergenic 25.0%
! AGTAAAATGAAAGAAAGCAA+GGG - Chr1:88375023-88375042 None:intergenic 25.0%
! ATTAAAATGTCATTCACATG+TGG - Chr1:88377604-88377623 None:intergenic 25.0%
! ATTAATAGAACAGAAGGAAA+GGG + Chr1:88378856-88378875 MsG0180005199.01.T01:three_prime_UTR 25.0%
! CAAGAAGAAAAAGAAAATCA+AGG + Chr1:88378373-88378392 MsG0180005199.01.T01:CDS 25.0%
! CTAAATAGGTCAAGTAATAT+GGG - Chr1:88376261-88376280 None:intergenic 25.0%
! GAAAATTCCTTTACTTGAAT+TGG + Chr1:88377157-88377176 MsG0180005199.01.T01:intron 25.0%
! GCAATTTATTGATCAAATTG+TGG + Chr1:88377746-88377765 MsG0180005199.01.T01:intron 25.0%
! GGTTCATTATTTATTTAGGT+GGG - Chr1:88377410-88377429 None:intergenic 25.0%
! TATTTATAGAAAGGGTAGTT+TGG + Chr1:88377232-88377251 MsG0180005199.01.T01:intron 25.0%
! TCGAACTGTAATAATATAAC+AGG - Chr1:88377927-88377946 None:intergenic 25.0%
! TCTAAATAGGTCAAGTAATA+TGG - Chr1:88376262-88376281 None:intergenic 25.0%
! TCTTCATCTATTATTCTTAG+AGG - Chr1:88377826-88377845 None:intergenic 25.0%
! TGATCAATAAATTGCATCAT+TGG - Chr1:88377741-88377760 None:intergenic 25.0%
! TTGAGGTGAAATTGAAATTA+AGG - Chr1:88374855-88374874 None:intergenic 25.0%
!! CTTGATTTTCTTTTTCTTCT+TGG - Chr1:88378375-88378394 None:intergenic 25.0%
!! GTTCTTTTCATTTTCTCATT+TGG + Chr1:88374901-88374920 MsG0180005199.01.T01:intron 25.0%
!! TCTAAAATAAATGGAGAAAC+TGG + Chr1:88375301-88375320 MsG0180005199.01.T01:intron 25.0%
!!! AATCATTTTTCGACATGAAT+TGG - Chr1:88376903-88376922 None:intergenic 25.0%
!!! ATTCTCTAGTTTGTTTTCTT+AGG + Chr1:88374931-88374950 MsG0180005199.01.T01:intron 25.0%
!!! CATGATACTTATTGATTCAA+TGG - Chr1:88377704-88377723 None:intergenic 25.0%
!!! CTAGTTATTTTAGATCACTT+AGG + Chr1:88378902-88378921 MsG0180005199.01.T01:three_prime_UTR 25.0%
!!! GAATTGCTTTGTTTTTATAG+AGG - Chr1:88375866-88375885 None:intergenic 25.0%
!!! GTTTTATTTCTTTTGGTCAT+TGG + Chr1:88378801-88378820 MsG0180005199.01.T01:three_prime_UTR 25.0%
!!! TTACATTTTATTTTAGACGG+AGG + Chr1:88375397-88375416 MsG0180005199.01.T01:intron 25.0%
!!! TTATCTCAATTTTCAAGTGT+TGG + Chr1:88375195-88375214 MsG0180005199.01.T01:intron 25.0%
!!! TTATTTTAGATCACTTAGGT+CGG + Chr1:88378906-88378925 MsG0180005199.01.T01:three_prime_UTR 25.0%
!!! TTTTCCTTTCTGAAGAAATA+CGG + Chr1:88375235-88375254 MsG0180005199.01.T01:intron 25.0%
AAAAAGAATTCCCATGGATA+TGG - Chr1:88378974-88378993 None:intergenic 30.0%
AAATGAATCGTCCACAATAT+TGG - Chr1:88377976-88377995 None:intergenic 30.0%
AAGAATAAGAACTTGTGCTT+TGG - Chr1:88377506-88377525 None:intergenic 30.0%
AGTTATTTGAAAGAGGAAAG+AGG - Chr1:88374760-88374779 None:intergenic 30.0%
ATAATGAACCTTCAAATTGG+TGG + Chr1:88377420-88377439 MsG0180005199.01.T01:intron 30.0%
ATGACTTCCAATTCAAGTAA+AGG - Chr1:88377167-88377186 None:intergenic 30.0%
CTTCAGAAAGGAAAATTGAA+TGG - Chr1:88375230-88375249 None:intergenic 30.0%
CTTGGAATACAACATTTGAA+GGG + Chr1:88378706-88378725 MsG0180005199.01.T01:exon 30.0%
GAGTAAAATGAAAGAAAGCA+AGG - Chr1:88375024-88375043 None:intergenic 30.0%
GATTAATAGAACAGAAGGAA+AGG + Chr1:88378855-88378874 MsG0180005199.01.T01:three_prime_UTR 30.0%
TCAACTAGGTCAAGTAATAT+GGG + Chr1:88376476-88376495 MsG0180005199.01.T01:intron 30.0%
TTGGTTTCTTGACAATAATC+CGG - Chr1:88378334-88378353 None:intergenic 30.0%
TTTCCGTAAAAAATTACGTG+CGG + Chr1:88375817-88375836 MsG0180005199.01.T01:intron 30.0%
!! TATCATAAGTTGATGTAGCT+AGG - Chr1:88375356-88375375 None:intergenic 30.0%
!!! ATTCTTAGAGGCTAGTTTTA+TGG - Chr1:88377814-88377833 None:intergenic 30.0%
!!! TTATTTTTGGTCAAGTAGAG+TGG - Chr1:88377084-88377103 None:intergenic 30.0%
!!! TTGCATATTGCCACTTTTTT+AGG + Chr1:88376987-88377006 MsG0180005199.01.T01:intron 30.0%
AAACCATTCATGATGTTGCT+AGG - Chr1:88376732-88376751 None:intergenic 35.0%
AAAGAAAGCAAGGGCAAAAT+TGG - Chr1:88375014-88375033 None:intergenic 35.0%
AAAGAGTAGTGAGAAGAGAA+TGG - Chr1:88374832-88374851 None:intergenic 35.0%
AAAGCTACAAACAGACAATC+AGG - Chr1:88376576-88376595 None:intergenic 35.0%
AACCATTCATGATGTTGCTA+GGG - Chr1:88376731-88376750 None:intergenic 35.0%
AACTGCAAAAAGAATTCCCA+TGG - Chr1:88378980-88378999 None:intergenic 35.0%
AAGAAAAATATTGGGACCAG+CGG + Chr1:88375476-88375495 MsG0180005199.01.T01:intron 35.0%
AAGATCTTCTTTCATTGGAG+TGG + Chr1:88377946-88377965 MsG0180005199.01.T01:CDS 35.0%
AGATCTTCTTTCATTGGAGT+GGG + Chr1:88377947-88377966 MsG0180005199.01.T01:CDS 35.0%
AGTGGCAATATGCAATTGAT+TGG - Chr1:88376982-88377001 None:intergenic 35.0%
ATAGGTCAAGTAATATGGGA+CGG - Chr1:88376257-88376276 None:intergenic 35.0%
CATCATAATAGTTCCGTGTA+CGG + Chr1:88376549-88376568 MsG0180005199.01.T01:intron 35.0%
CCTTCAAATGTTGTATTCCA+AGG - Chr1:88378708-88378727 None:intergenic 35.0%
CCTTGGAATACAACATTTGA+AGG + Chr1:88378705-88378724 MsG0180005199.01.T01:CDS 35.0%
GTCAACTAGGTCAAGTAATA+TGG + Chr1:88376475-88376494 MsG0180005199.01.T01:intron 35.0%
GTCATAATCAAGCAATCAGA+CGG - Chr1:88376530-88376549 None:intergenic 35.0%
GTTCGAAGATCTTCTTTCAT+TGG + Chr1:88377941-88377960 MsG0180005199.01.T01:intron 35.0%
TAGATTGACCACCAATTTGA+AGG - Chr1:88377431-88377450 None:intergenic 35.0%
TATCCTTGCATCTCATTTCA+AGG - Chr1:88378637-88378656 None:intergenic 35.0%
TGAGAAGAGAATGGTAGAAA+AGG - Chr1:88374823-88374842 None:intergenic 35.0%
TGGAGTGAGTTATTTGAAAG+AGG - Chr1:88374767-88374786 None:intergenic 35.0%
TGGTTTCTTGACAATAATCC+GGG - Chr1:88378333-88378352 None:intergenic 35.0%
TTAAGTAACTCTCTACTCAC+CGG - Chr1:88376159-88376178 None:intergenic 35.0%
TTCAGGAAACTTGATTGTGT+CGG + Chr1:88377262-88377281 MsG0180005199.01.T01:intron 35.0%
TTCATTAGTGAGTGTAGTGT+CGG + Chr1:88374964-88374983 MsG0180005199.01.T01:intron 35.0%
! AAACAAACATGGGTTGTTAC+TGG - Chr1:88377455-88377474 None:intergenic 35.0%
! TTGAAAATTTTGCTGAGTCC+CGG + Chr1:88378312-88378331 MsG0180005199.01.T01:CDS 35.0%
!! ACTAAGCTTAGTTTCAGGTT+TGG + Chr1:88374879-88374898 MsG0180005199.01.T01:intron 35.0%
!! ATAAGTTGATGTAGCTAGGA+CGG - Chr1:88375352-88375371 None:intergenic 35.0%
!! TTGACTTGCAGAGAAGAAAA+TGG + Chr1:88375927-88375946 MsG0180005199.01.T01:intron 35.0%
!!! GGTAGTTTGGTCATTTTTTC+AGG + Chr1:88377245-88377264 MsG0180005199.01.T01:intron 35.0%
!!! TGGTCATTGGTTTTTGTACA+GGG + Chr1:88378814-88378833 MsG0180005199.01.T01:three_prime_UTR 35.0%
!!! TTGCCGCACGTAATTTTTTA+CGG - Chr1:88375823-88375842 None:intergenic 35.0%
!!! TTGGTCATTGGTTTTTGTAC+AGG + Chr1:88378813-88378832 MsG0180005199.01.T01:three_prime_UTR 35.0%
AAAACACTCTGCAATGCTTG+CGG + Chr1:88378515-88378534 MsG0180005199.01.T01:CDS 40.0%
AAGAAACCAAAGCTCTCTTC+TGG + Chr1:88378344-88378363 MsG0180005199.01.T01:CDS 40.0%
ACAGAAGGAAAGGGAAGAAA+AGG + Chr1:88378865-88378884 MsG0180005199.01.T01:three_prime_UTR 40.0%
ACTATTTCCAGCTTGTCACA+CGG + Chr1:88376596-88376615 MsG0180005199.01.T01:intron 40.0%
AGAATGGTTCACTACCTGTT+AGG + Chr1:88378432-88378451 MsG0180005199.01.T01:CDS 40.0%
AGATAACCAAGACTCCACAA+TGG + Chr1:88378471-88378490 MsG0180005199.01.T01:CDS 40.0%
AGCGGTGGCTAAAATACAAT+GGG + Chr1:88375494-88375513 MsG0180005199.01.T01:intron 40.0%
CAATAGTACTTCAGACCTCT+CGG + Chr1:88376116-88376135 MsG0180005199.01.T01:CDS 40.0%
CAATGCATGCATTTCCTAAC+AGG - Chr1:88378449-88378468 None:intergenic 40.0%
CAGAAGGAAAGGGAAGAAAA+GGG + Chr1:88378866-88378885 MsG0180005199.01.T01:three_prime_UTR 40.0%
CTAGGTCAAGTAATATGGGA+CGG + Chr1:88376480-88376499 MsG0180005199.01.T01:intron 40.0%
CTGCTTTCAAGGACAGAAAT+AGG - Chr1:88378095-88378114 None:intergenic 40.0%
GAAGAAAAGGGTAGGATCTT+AGG + Chr1:88378878-88378897 MsG0180005199.01.T01:three_prime_UTR 40.0%
GCAACGTAATTCATCCAATG+AGG - Chr1:88375625-88375644 None:intergenic 40.0%
TCAAGGACAGAAATAGGACT+TGG - Chr1:88378089-88378108 None:intergenic 40.0%
TTCCCTAGCAACATCATGAA+TGG + Chr1:88376726-88376745 MsG0180005199.01.T01:intron 40.0%
TTTAGATCACTTAGGTCGGT+AGG + Chr1:88378910-88378929 MsG0180005199.01.T01:three_prime_UTR 40.0%
! AAGGACCTTTTTGTGCGAAT+TGG - Chr1:88378618-88378637 None:intergenic 40.0%
! TGTGGACGATTCATTTTGTG+AGG + Chr1:88377980-88377999 MsG0180005199.01.T01:CDS 40.0%
! TTTTTGTACAGGGCTGGAAT+GGG + Chr1:88378824-88378843 MsG0180005199.01.T01:three_prime_UTR 40.0%
!! AAAATCTGAAGAAAGCGCCT+TGG - Chr1:88378294-88378313 None:intergenic 40.0%
!! CAAGCATTGCAGAGTGTTTT+TGG - Chr1:88378515-88378534 None:intergenic 40.0%
AAAAATATTGGGACCAGCGG+TGG + Chr1:88375479-88375498 MsG0180005199.01.T01:intron 45.0%
AAACACCAATGTTCTCGCCT+TGG + Chr1:88378688-88378707 MsG0180005199.01.T01:CDS 45.0%
AACACCGAGTCAGACTCATT+CGG - Chr1:88376090-88376109 None:intergenic 45.0%
AACCAAGACTCCACAATGGA+GGG + Chr1:88378475-88378494 MsG0180005199.01.T01:CDS 45.0%
ACATAATCCGTGTGACAAGC+TGG - Chr1:88376606-88376625 None:intergenic 45.0%
ACCCCTCAAATTGGAGAGTA+GGG - Chr1:88377311-88377330 None:intergenic 45.0%
ACCCTACTCTCCAATTTGAG+GGG + Chr1:88377307-88377326 MsG0180005199.01.T01:intron 45.0%
AGCAGGAACTACTGCTTTCA+AGG - Chr1:88378106-88378125 None:intergenic 45.0%
AGGAAAGGGAAGAAAAGGGT+AGG + Chr1:88378870-88378889 MsG0180005199.01.T01:three_prime_UTR 45.0%
ATACGACGCGACTCTAGATA+AGG - Chr1:88378765-88378784 None:intergenic 45.0%
ATCATCATCAGCTGTCAGCA+AGG + Chr1:88378034-88378053 MsG0180005199.01.T01:CDS 45.0%
ATGAGTTGCATAGCAGAACG+AGG - Chr1:88378218-88378237 None:intergenic 45.0%
CACCCTACTCTCCAATTTGA+GGG + Chr1:88377306-88377325 MsG0180005199.01.T01:intron 45.0%
CAGCGGTGGCTAAAATACAA+TGG + Chr1:88375493-88375512 MsG0180005199.01.T01:intron 45.0%
CATACGTGACAGAGTCAACT+AGG + Chr1:88376462-88376481 MsG0180005199.01.T01:intron 45.0%
CATGTTCTCCTCAACAGAAG+AGG - Chr1:88378252-88378271 None:intergenic 45.0%
CCTCAACAGAAGAGGAAGTA+GGG - Chr1:88378244-88378263 None:intergenic 45.0%
CTCAACAGAAGAGGAAGTAG+GGG - Chr1:88378243-88378262 None:intergenic 45.0%
CTTGCAGAGAAGAAAATGGC+TGG + Chr1:88375931-88375950 MsG0180005199.01.T01:intron 45.0%
GCACTCCAATTCGCACAAAA+AGG + Chr1:88378610-88378629 MsG0180005199.01.T01:CDS 45.0%
GCCTAATGTTATCTCCACCA+AGG + Chr1:88378274-88378293 MsG0180005199.01.T01:CDS 45.0%
GCCTTGGTGGAGATAACATT+AGG - Chr1:88378278-88378297 None:intergenic 45.0%
GCGACCGTATTTCTTCAGAA+AGG - Chr1:88375242-88375261 None:intergenic 45.0%
GGAGAGTCTCACAATGAAAG+TGG + Chr1:88378001-88378020 MsG0180005199.01.T01:CDS 45.0%
GGTCCTTGAAATGAGATGCA+AGG + Chr1:88378631-88378650 MsG0180005199.01.T01:CDS 45.0%
GGTGCGCTGTCTCAATTATT+TGG + Chr1:88377328-88377347 MsG0180005199.01.T01:intron 45.0%
GTATTCCAAGGCGAGAACAT+TGG - Chr1:88378696-88378715 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG + Chr1:88376484-88376503 MsG0180005199.01.T01:intron 45.0%
GTCAAGTAATATGGGACGGA+GGG - Chr1:88376503-88376484 None:intergenic 45.0%
TAACCAAGACTCCACAATGG+AGG + Chr1:88378474-88378493 MsG0180005199.01.T01:CDS 45.0%
TCAAGTAATATGGGACGGAG+GGG - Chr1:88376504-88376485 None:intergenic 45.0%
TCCTCAACAGAAGAGGAAGT+AGG - Chr1:88378245-88378264 None:intergenic 45.0%
TCTATTTGGCGTGACCTCAT+TGG + Chr1:88375608-88375627 MsG0180005199.01.T01:intron 45.0%
TGAGTTGCATAGCAGAACGA+GGG - Chr1:88378217-88378236 None:intergenic 45.0%
! AAGGCGAGAACATTGGTGTT+TGG - Chr1:88378689-88378708 None:intergenic 45.0%
! AGCTTGTCACACGGATTATG+TGG + Chr1:88376605-88376624 MsG0180005199.01.T01:intron 45.0%
! GTTTTTGTACAGGGCTGGAA+TGG + Chr1:88378823-88378842 MsG0180005199.01.T01:three_prime_UTR 45.0%
! TTGATTGTGTCGGTGACATG+TGG + Chr1:88377272-88377291 MsG0180005199.01.T01:intron 45.0%
! TTGCTGACAGCTGATGATGA+TGG - Chr1:88378035-88378054 None:intergenic 45.0%
! TTTTGTACAGGGCTGGAATG+GGG + Chr1:88378825-88378844 MsG0180005199.01.T01:three_prime_UTR 45.0%
!!! CATTGGTTTTTGTACAGGGC+TGG + Chr1:88378818-88378837 MsG0180005199.01.T01:three_prime_UTR 45.0%
!!! CATTGTATTTTAGCCACCGC+TGG - Chr1:88375495-88375514 None:intergenic 45.0%
!!! GGAGTCAGCGTCTTTTTTCT+TGG + Chr1:88378931-88378950 MsG0180005199.01.T01:three_prime_UTR 45.0%
!! ATAATATGAAATAAATAAAT+TGG + Chr1:88375437-88375456 MsG0180005199.01.T01:intron 5.0%
!! TAATATGAAATAAATAAATT+GGG + Chr1:88375438-88375457 MsG0180005199.01.T01:intron 5.0%
!!! TTATTTTTATTTTCTAAAAT+TGG + Chr1:88377123-88377142 MsG0180005199.01.T01:intron 5.0%
AATGGGGACGTAAATCCCTG+TGG - Chr1:88378141-88378160 None:intergenic 50.0%
ACAACTCGTTGGCGAGTATC+TGG + Chr1:88376064-88376083 MsG0180005199.01.T01:CDS 50.0%
AGGGATTTACGTCCCCATTC+CGG + Chr1:88378142-88378161 MsG0180005199.01.T01:CDS 50.0%
ATCATCAGCTGTCAGCAAGG+AGG + Chr1:88378037-88378056 MsG0180005199.01.T01:CDS 50.0%
CACCCCTCAAATTGGAGAGT+AGG - Chr1:88377312-88377331 None:intergenic 50.0%
CAGACAATCAGGTCCGTACA+CGG - Chr1:88376565-88376584 None:intergenic 50.0%
CATAGCAGAACGAGGGTTGA+AGG - Chr1:88378210-88378229 None:intergenic 50.0%
CCACCCTACTCTCCAATTTG+AGG + Chr1:88377305-88377324 MsG0180005199.01.T01:intron 50.0%
CCCTACTTCCTCTTCTGTTG+AGG + Chr1:88378241-88378260 MsG0180005199.01.T01:CDS 50.0%
CCTCAAATTGGAGAGTAGGG+TGG - Chr1:88377308-88377327 None:intergenic 50.0%
CTCTCTACTCACCGGATCAA+CGG - Chr1:88376151-88376170 None:intergenic 50.0%
GAAAGCAGTAGTTCCTGCTC+TGG + Chr1:88378107-88378126 MsG0180005199.01.T01:CDS 50.0%
GAGAGAGGGGAATAGTGTGT+TGG - Chr1:88374787-88374806 None:intergenic 50.0%
GGAGTGGGTGTCCAATATTG+TGG + Chr1:88377962-88377981 MsG0180005199.01.T01:CDS 50.0%
GGTCAAGTAATATGGGACGG+AGG + Chr1:88376483-88376502 MsG0180005199.01.T01:intron 50.0%
GGTCAAGTAATATGGGACGG+AGG - Chr1:88376502-88376483 None:intergenic 50.0%
GTCTCTCCAGAAGAGAGCTT+TGG - Chr1:88378353-88378372 None:intergenic 50.0%
GTGTGAGAGAGAGAGAGAGA+GGG - Chr1:88374801-88374820 None:intergenic 50.0%
TAGTACTTCAGACCTCTCGG+CGG + Chr1:88376119-88376138 MsG0180005199.01.T01:CDS 50.0%
TATGGGACGGAGGGAGTAAT+AGG + Chr1:88376493-88376512 MsG0180005199.01.T01:intron 50.0%
TCTCTACTCACCGGATCAAC+GGG - Chr1:88376150-88376169 None:intergenic 50.0%
TGAAGGGAACTGAGCCTAGT+TGG + Chr1:88378722-88378741 MsG0180005199.01.T01:exon 50.0%
TGCACAGCTGGACAAAACGT+TGG - Chr1:88378593-88378612 None:intergenic 50.0%
TGTGAGAGAGAGAGAGAGAG+GGG - Chr1:88374800-88374819 None:intergenic 50.0%
TTGCGGTGTACGCTACAAGT+CGG + Chr1:88378532-88378551 MsG0180005199.01.T01:CDS 50.0%
! CAACGAGTTGTAGTTTGCCG+CGG - Chr1:88376055-88376074 None:intergenic 50.0%
!! ATCTGAAGAAAGCGCCTTGG+TGG - Chr1:88378291-88378310 None:intergenic 50.0%
!! CAAAACGTTGGACTAGCAGC+AGG - Chr1:88378581-88378600 None:intergenic 50.0%
!!! CAGAGTGTTTTTGGCCCCAT+TGG - Chr1:88378506-88378525 None:intergenic 50.0%
!!! GAGTCTGACTCGGTGTTTTC+TGG + Chr1:88376093-88376112 MsG0180005199.01.T01:CDS 50.0%
AACGAGGGTTGAAGGCTGTG+GGG - Chr1:88378202-88378221 None:intergenic 55.0%
AAGACTCCACAATGGAGGGC+AGG + Chr1:88378479-88378498 MsG0180005199.01.T01:CDS 55.0%
AATGGAGGGCAGGTCCAATG+GGG + Chr1:88378489-88378508 MsG0180005199.01.T01:CDS 55.0%
ACAATGGAGGGCAGGTCCAA+TGG + Chr1:88378487-88378506 MsG0180005199.01.T01:CDS 55.0%
ACGCGACTCTAGATAAGGCG+AGG - Chr1:88378760-88378779 None:intergenic 55.0%
ACTAGCAGCAGGCCGGTATT+CGG - Chr1:88378570-88378589 None:intergenic 55.0%
AGAACGAGGGTTGAAGGCTG+TGG - Chr1:88378204-88378223 None:intergenic 55.0%
AGACAGCGCACCCCTCAAAT+TGG - Chr1:88377320-88377339 None:intergenic 55.0%
AGCAGTAGTTCCTGCTCTGG+TGG + Chr1:88378110-88378129 MsG0180005199.01.T01:CDS 55.0%
AGGGCTGGAATGGGGAGAAT+AGG + Chr1:88378833-88378852 MsG0180005199.01.T01:three_prime_UTR 55.0%
ATTGGACCTGCCCTCCATTG+TGG - Chr1:88378488-88378507 None:intergenic 55.0%
CAATGGAGGGCAGGTCCAAT+GGG + Chr1:88378488-88378507 MsG0180005199.01.T01:CDS 55.0%
CGCGGCAAACTACAACTCGT+TGG + Chr1:88376053-88376072 MsG0180005199.01.T01:CDS 55.0%
CTCTACTCACCGGATCAACG+GGG - Chr1:88376149-88376168 None:intergenic 55.0%
CTGGCCGAATGAGTCTGACT+CGG + Chr1:88376083-88376102 MsG0180005199.01.T01:CDS 55.0%
CTGTCAGCAAGGAGGACTCT+GGG + Chr1:88378045-88378064 MsG0180005199.01.T01:CDS 55.0%
GAACGAGGGTTGAAGGCTGT+GGG - Chr1:88378203-88378222 None:intergenic 55.0%
GCCGACTATTCCCCGAATAC+CGG + Chr1:88378555-88378574 MsG0180005199.01.T01:CDS 55.0%
GCCGGTATTCGGGGAATAGT+CGG - Chr1:88378559-88378578 None:intergenic 55.0%
GCTCTGGTGGAAAGACCACA+GGG + Chr1:88378123-88378142 MsG0180005199.01.T01:CDS 55.0%
GCTGACAGTGGCGAACAGAA+TGG + Chr1:88378416-88378435 MsG0180005199.01.T01:CDS 55.0%
GGTGTGAGAGAGAGAGAGAG+AGG - Chr1:88374802-88374821 None:intergenic 55.0%
TCAGCTGGAGCAGTAGGAAG+TGG - Chr1:88378401-88378420 None:intergenic 55.0%
TGCCCTCCATTGTGGAGTCT+TGG - Chr1:88378480-88378499 None:intergenic 55.0%
TGCGAATTGGAGTGCACAGC+TGG - Chr1:88378605-88378624 None:intergenic 55.0%
TGCGGTGTACGCTACAAGTC+GGG + Chr1:88378533-88378552 MsG0180005199.01.T01:CDS 55.0%
TGCTCTGGTGGAAAGACCAC+AGG + Chr1:88378122-88378141 MsG0180005199.01.T01:CDS 55.0%
TGTGGTCTTTCCACCAGAGC+AGG - Chr1:88378123-88378142 None:intergenic 55.0%
TTCTGTTCGCCACTGTCAGC+TGG - Chr1:88378416-88378435 None:intergenic 55.0%
! TTGTAGTTTGCCGCGGAGGA+GGG - Chr1:88376048-88376067 None:intergenic 55.0%
CCACTGTCAGCTGGAGCAGT+AGG - Chr1:88378407-88378426 None:intergenic 60.0%
CCTACTGCTCCAGCTGACAG+TGG + Chr1:88378404-88378423 MsG0180005199.01.T01:CDS 60.0%
CTAGCAGCAGGCCGGTATTC+GGG - Chr1:88378569-88378588 None:intergenic 60.0%
GCTGTCAGCAAGGAGGACTC+TGG + Chr1:88378044-88378063 MsG0180005199.01.T01:CDS 60.0%
TAGCAGCAGGCCGGTATTCG+GGG - Chr1:88378568-88378587 None:intergenic 60.0%
! AGCGGTGTCAACGTCGTCGA+CGG - Chr1:88376013-88376032 None:intergenic 60.0%
! CGAGTTGTAGTTTGCCGCGG+AGG - Chr1:88376052-88376071 None:intergenic 60.0%
! GTTGTAGTTTGCCGCGGAGG+AGG - Chr1:88376049-88376068 None:intergenic 60.0%
!! ACGTTGGACTAGCAGCAGGC+CGG - Chr1:88378577-88378596 None:intergenic 60.0%
CGCGGAGGAGGGCAATGAAG+CGG - Chr1:88376037-88376056 None:intergenic 65.0%
CGCTTCATTGCCCTCCTCCG+CGG + Chr1:88376035-88376054 MsG0180005199.01.T01:CDS 65.0%
GGAGGGCAATGAAGCGGCAG+CGG - Chr1:88376031-88376050 None:intergenic 65.0%
GTCCCCATTCCGGTGCCTTG+CGG + Chr1:88378152-88378171 MsG0180005199.01.T01:CDS 65.0%
TTGGTGCGTGCACGTCCGCA+AGG - Chr1:88378170-88378189 None:intergenic 65.0%
! CGGTGTCAACGTCGTCGACG+GGG - Chr1:88376011-88376030 None:intergenic 65.0%
! GCGGTGTCAACGTCGTCGAC+GGG - Chr1:88376012-88376031 None:intergenic 65.0%
!! ACGTCCGCAAGGCACCGGAA+TGG - Chr1:88378159-88378178 None:intergenic 65.0%
!! CGTCCGCAAGGCACCGGAAT+GGG - Chr1:88378158-88378177 None:intergenic 65.0%
!! GTCCGCAAGGCACCGGAATG+GGG - Chr1:88378157-88378176 None:intergenic 65.0%
CGTGCACGTCCGCAAGGCAC+CGG - Chr1:88378164-88378183 None:intergenic 70.0%
GGCGGAGCTCCCCGTTGATC+CGG + Chr1:88376137-88376156 MsG0180005199.01.T01:CDS 70.0%
GGGTTGAAGGCTGTGGGGCG+TGG - Chr1:88378197-88378216 None:intergenic 70.0%
CAACGGGGAGCTCCGCCGAG+AGG - Chr1:88376134-88376153 None:intergenic 75.0%
GGCTGTGGGGCGTGGACGCT+TGG - Chr1:88378189-88378208 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 88374752 88379061 88374752 ID=MsG0180005199.01;Name=MsG0180005199.01
Chr1 mRNA 88374752 88379061 88374752 ID=MsG0180005199.01.T01;Parent=MsG0180005199.01;Name=MsG0180005199.01.T01;_AED=0.47;_eAED=0.47;_QI=207|1|1|1|0.33|0.25|4|337|331
Chr1 exon 88374752 88374895 88374752 ID=MsG0180005199.01.T01:exon:37240;Parent=MsG0180005199.01.T01
Chr1 exon 88375119 88375173 88375119 ID=MsG0180005199.01.T01:exon:37241;Parent=MsG0180005199.01.T01
Chr1 exon 88375938 88376158 88375938 ID=MsG0180005199.01.T01:exon:37242;Parent=MsG0180005199.01.T01
Chr1 exon 88377942 88379061 88377942 ID=MsG0180005199.01.T01:exon:37243;Parent=MsG0180005199.01.T01
Chr1 five_prime_UTR 88374752 88374895 88374752 ID=MsG0180005199.01.T01:five_prime_utr;Parent=MsG0180005199.01.T01
Chr1 five_prime_UTR 88375119 88375173 88375119 ID=MsG0180005199.01.T01:five_prime_utr;Parent=MsG0180005199.01.T01
Chr1 five_prime_UTR 88375938 88375945 88375938 ID=MsG0180005199.01.T01:five_prime_utr;Parent=MsG0180005199.01.T01
Chr1 CDS 88375946 88376158 88375946 ID=MsG0180005199.01.T01:cds;Parent=MsG0180005199.01.T01
Chr1 CDS 88377942 88378724 88377942 ID=MsG0180005199.01.T01:cds;Parent=MsG0180005199.01.T01
Chr1 three_prime_UTR 88378725 88379061 88378725 ID=MsG0180005199.01.T01:three_prime_utr;Parent=MsG0180005199.01.T01
Gene Sequence

>MsG0180005199.01.T01

ATGGCTGGAACAATGAACGAGATTGATTGCTTCAACTTATTTGACAACATTGATGACATCTACCCCGTCGACGACGTTGACACCGCTGCCGCTTCATTGCCCTCCTCCGCGGCAAACTACAACTCGTTGGCGAGTATCTGGCCGAATGAGTCTGACTCGGTGTTTTCTGGCAATAGTACTTCAGACCTCTCGGCGGAGCTCCCCGTTGATCCGTTCGAAGATCTTCTTTCATTGGAGTGGGTGTCCAATATTGTGGACGATTCATTTTGTGAGGAGAGTCTCACAATGAAAGTGGAGCAGCAGCCATCATCATCAGCTGTCAGCAAGGAGGACTCTGGGCATTATCAATTTCAGACACCAAGTCCTATTTCTGTCCTTGAAAGCAGTAGTTCCTGCTCTGGTGGAAAGACCACAGGGATTTACGTCCCCATTCCGGTGCCTTGCGGACGTGCACGCACCAAGCGTCCACGCCCCACAGCCTTCAACCCTCGTTCTGCTATGCAACTCATTTCCCCTACTTCCTCTTCTGTTGAGGAGAACATGCAGCCTAATGTTATCTCCACCAAGGCGCTTTCTTCAGATTTTGAAAATTTTGCTGAGTCCCGGATTATTGTCAAGAAACCAAAGCTCTCTTCTGGAGAGACCAAGAAGAAAAAGAAAATCAAGGCACCACTTCCTACTGCTCCAGCTGACAGTGGCGAACAGAATGGTTCACTACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACTCCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTCTGCAATGCTTGCGGTGTACGCTACAAGTCGGGCCGACTATTCCCCGAATACCGGCCTGCTGCTAGTCCAACGTTTTGTCCAGCTGTGCACTCCAATTCGCACAAAAAGGTCCTTGAAATGAGATGCAAGGATAGTTTTGAATCAGATTCAGCTGAACTCATTCCAAACACCAATGTTCTCGCCTTGGAATACAACATTTGA
Protein sequence

>MsG0180005199.01.T01

MAGTMNEIDCFNLFDNIDDIYPVDDVDTAAASLPSSAANYNSLASIWPNESDSVFSGNSTSDLSAELPVDPFEDLLSLEWVSNIVDDSFCEESLTMKVEQQPSSSAVSKEDSGHYQFQTPSPISVLESSSSCSGGKTTGIYVPIPVPCGRARTKRPRPTAFNPRSAMQLISPTSSSVEENMQPNVISTKALSSDFENFAESRIIVKKPKLSSGETKKKKKIKAPLPTAPADSGEQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRCKDSFESDSAELIPNTNVLALEYNI*