Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006562.01.T02 | XP_003593373.1 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 2.15E-81 | 244 |
| MsG0280006562.01.T01 | XP_003593373.1 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 2.15E-81 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006562.01.T01 | Q8LDI5 | 67.857 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 2.77E-52 | 163 |
| MsG0280006562.01.T02 | Q8LDI5 | 67.857 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 2.77E-52 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006562.01.T01 | B7FIZ6 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 1.03e-81 | 244 |
| MsG0280006562.01.T02 | B7FIZ6 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 1.03e-81 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006562.01.T02 | MTR_2g010750 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 2.61e-85 | 244 |
| MsG0280006562.01.T02 | MTR_4g081380 | 59.322 | 118 | 48 | 0 | 5 | 122 | 6 | 123 | 9.79e-51 | 157 |
| MsG0280006562.01.T02 | MTR_2g082590 | 60.714 | 112 | 44 | 0 | 8 | 119 | 9 | 120 | 9.30e-50 | 154 |
| MsG0280006562.01.T02 | MTR_2g010750 | 89.873 | 79 | 8 | 0 | 1 | 79 | 1 | 79 | 1.53e-48 | 150 |
| MsG0280006562.01.T02 | MTR_2g082590 | 54.400 | 125 | 44 | 1 | 8 | 119 | 9 | 133 | 9.66e-46 | 145 |
| MsG0280006562.01.T02 | MTR_4g081380 | 62.857 | 70 | 26 | 0 | 5 | 74 | 6 | 75 | 4.26e-28 | 99.0 |
| MsG0280006562.01.T02 | MTR_1g023140 | 38.793 | 116 | 71 | 0 | 7 | 122 | 4 | 119 | 3.84e-27 | 97.4 |
| MsG0280006562.01.T02 | MTR_8g005320 | 37.500 | 112 | 70 | 0 | 1 | 112 | 18 | 129 | 2.23e-26 | 96.3 |
| MsG0280006562.01.T02 | MTR_3g112410 | 40.952 | 105 | 62 | 0 | 8 | 112 | 5 | 109 | 1.03e-25 | 93.6 |
| MsG0280006562.01.T02 | MTR_8g006685 | 37.500 | 112 | 70 | 0 | 1 | 112 | 87 | 198 | 2.64e-25 | 95.1 |
| MsG0280006562.01.T02 | MTR_8g006560 | 37.500 | 112 | 70 | 0 | 1 | 112 | 87 | 198 | 2.64e-25 | 95.1 |
| MsG0280006562.01.T02 | MTR_7g073680 | 35.897 | 117 | 75 | 0 | 2 | 118 | 17 | 133 | 4.99e-25 | 92.8 |
| MsG0280006562.01.T02 | MTR_5g021180 | 40.541 | 111 | 66 | 0 | 8 | 118 | 7 | 117 | 5.15e-25 | 92.0 |
| MsG0280006562.01.T02 | MTR_7g009070 | 39.362 | 94 | 57 | 0 | 20 | 113 | 37 | 130 | 1.49e-24 | 91.3 |
| MsG0280006562.01.T02 | MTR_5g037950 | 40.000 | 105 | 63 | 0 | 9 | 113 | 19 | 123 | 1.85e-18 | 75.5 |
| MsG0280006562.01.T02 | MTR_8g107460 | 32.692 | 104 | 70 | 0 | 9 | 112 | 254 | 357 | 5.63e-18 | 78.2 |
| MsG0280006562.01.T02 | MTR_5g037930 | 37.143 | 105 | 66 | 0 | 9 | 113 | 20 | 124 | 1.56e-16 | 70.5 |
| MsG0280006562.01.T02 | MTR_5g037890 | 39.048 | 105 | 64 | 0 | 9 | 113 | 18 | 122 | 3.49e-16 | 69.7 |
| MsG0280006562.01.T02 | MTR_1g098660 | 34.091 | 88 | 56 | 2 | 28 | 113 | 75 | 162 | 4.42e-14 | 65.1 |
| MsG0280006562.01.T02 | MTR_4g088905 | 31.683 | 101 | 69 | 0 | 24 | 124 | 14 | 114 | 2.10e-13 | 65.9 |
| MsG0280006562.01.T02 | MTR_8g059015 | 35.632 | 87 | 54 | 2 | 32 | 116 | 90 | 176 | 4.96e-12 | 60.1 |
| MsG0280006562.01.T01 | MTR_2g010750 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 2.61e-85 | 244 |
| MsG0280006562.01.T01 | MTR_4g081380 | 59.322 | 118 | 48 | 0 | 5 | 122 | 6 | 123 | 9.79e-51 | 157 |
| MsG0280006562.01.T01 | MTR_2g082590 | 60.714 | 112 | 44 | 0 | 8 | 119 | 9 | 120 | 9.30e-50 | 154 |
| MsG0280006562.01.T01 | MTR_2g010750 | 89.873 | 79 | 8 | 0 | 1 | 79 | 1 | 79 | 1.53e-48 | 150 |
| MsG0280006562.01.T01 | MTR_2g082590 | 54.400 | 125 | 44 | 1 | 8 | 119 | 9 | 133 | 9.66e-46 | 145 |
| MsG0280006562.01.T01 | MTR_4g081380 | 62.857 | 70 | 26 | 0 | 5 | 74 | 6 | 75 | 4.26e-28 | 99.0 |
| MsG0280006562.01.T01 | MTR_1g023140 | 38.793 | 116 | 71 | 0 | 7 | 122 | 4 | 119 | 3.84e-27 | 97.4 |
| MsG0280006562.01.T01 | MTR_8g005320 | 37.500 | 112 | 70 | 0 | 1 | 112 | 18 | 129 | 2.23e-26 | 96.3 |
| MsG0280006562.01.T01 | MTR_3g112410 | 40.952 | 105 | 62 | 0 | 8 | 112 | 5 | 109 | 1.03e-25 | 93.6 |
| MsG0280006562.01.T01 | MTR_8g006685 | 37.500 | 112 | 70 | 0 | 1 | 112 | 87 | 198 | 2.64e-25 | 95.1 |
| MsG0280006562.01.T01 | MTR_8g006560 | 37.500 | 112 | 70 | 0 | 1 | 112 | 87 | 198 | 2.64e-25 | 95.1 |
| MsG0280006562.01.T01 | MTR_7g073680 | 35.897 | 117 | 75 | 0 | 2 | 118 | 17 | 133 | 4.99e-25 | 92.8 |
| MsG0280006562.01.T01 | MTR_5g021180 | 40.541 | 111 | 66 | 0 | 8 | 118 | 7 | 117 | 5.15e-25 | 92.0 |
| MsG0280006562.01.T01 | MTR_7g009070 | 39.362 | 94 | 57 | 0 | 20 | 113 | 37 | 130 | 1.49e-24 | 91.3 |
| MsG0280006562.01.T01 | MTR_5g037950 | 40.000 | 105 | 63 | 0 | 9 | 113 | 19 | 123 | 1.85e-18 | 75.5 |
| MsG0280006562.01.T01 | MTR_8g107460 | 32.692 | 104 | 70 | 0 | 9 | 112 | 254 | 357 | 5.63e-18 | 78.2 |
| MsG0280006562.01.T01 | MTR_5g037930 | 37.143 | 105 | 66 | 0 | 9 | 113 | 20 | 124 | 1.56e-16 | 70.5 |
| MsG0280006562.01.T01 | MTR_5g037890 | 39.048 | 105 | 64 | 0 | 9 | 113 | 18 | 122 | 3.49e-16 | 69.7 |
| MsG0280006562.01.T01 | MTR_1g098660 | 34.091 | 88 | 56 | 2 | 28 | 113 | 75 | 162 | 4.42e-14 | 65.1 |
| MsG0280006562.01.T01 | MTR_4g088905 | 31.683 | 101 | 69 | 0 | 24 | 124 | 14 | 114 | 2.10e-13 | 65.9 |
| MsG0280006562.01.T01 | MTR_8g059015 | 35.632 | 87 | 54 | 2 | 32 | 116 | 90 | 176 | 4.96e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006562.01.T02 | AT1G11530 | 67.857 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 2.83e-53 | 163 |
| MsG0280006562.01.T02 | AT3G51030 | 41.905 | 105 | 61 | 0 | 8 | 112 | 5 | 109 | 4.52e-27 | 97.1 |
| MsG0280006562.01.T02 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.73e-25 | 94.0 |
| MsG0280006562.01.T02 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.73e-25 | 94.0 |
| MsG0280006562.01.T02 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.01e-25 | 93.6 |
| MsG0280006562.01.T02 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.01e-25 | 93.6 |
| MsG0280006562.01.T02 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.01e-25 | 93.6 |
| MsG0280006562.01.T02 | AT3G08710 | 34.746 | 118 | 77 | 0 | 1 | 118 | 15 | 132 | 9.30e-24 | 89.4 |
| MsG0280006562.01.T02 | AT3G08710 | 34.746 | 118 | 77 | 0 | 1 | 118 | 15 | 132 | 9.30e-24 | 89.4 |
| MsG0280006562.01.T02 | AT3G08710 | 34.746 | 118 | 77 | 0 | 1 | 118 | 15 | 132 | 9.30e-24 | 89.4 |
| MsG0280006562.01.T02 | AT5G39950 | 36.111 | 108 | 69 | 0 | 5 | 112 | 21 | 128 | 1.70e-22 | 85.9 |
| MsG0280006562.01.T02 | AT1G45145 | 35.849 | 106 | 68 | 0 | 7 | 112 | 3 | 108 | 2.53e-22 | 85.1 |
| MsG0280006562.01.T02 | AT1G59730 | 38.835 | 103 | 63 | 0 | 11 | 113 | 23 | 125 | 3.41e-21 | 82.8 |
| MsG0280006562.01.T02 | AT1G19730 | 36.792 | 106 | 66 | 1 | 8 | 112 | 5 | 110 | 4.72e-21 | 82.0 |
| MsG0280006562.01.T02 | AT5G42980 | 34.906 | 106 | 69 | 0 | 8 | 113 | 4 | 109 | 1.64e-19 | 78.2 |
| MsG0280006562.01.T02 | AT1G69880 | 29.464 | 112 | 79 | 0 | 7 | 118 | 35 | 146 | 3.65e-18 | 75.5 |
| MsG0280006562.01.T02 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 261 | 366 | 5.66e-17 | 75.5 |
| MsG0280006562.01.T02 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 268 | 373 | 6.19e-17 | 75.5 |
| MsG0280006562.01.T02 | AT1G43560 | 34.066 | 91 | 58 | 2 | 29 | 117 | 74 | 164 | 1.46e-13 | 63.9 |
| MsG0280006562.01.T02 | AT1G76760 | 33.333 | 87 | 56 | 2 | 29 | 113 | 79 | 165 | 2.44e-13 | 63.5 |
| MsG0280006562.01.T02 | AT4G32580 | 32.143 | 84 | 57 | 0 | 29 | 112 | 19 | 102 | 2.45e-13 | 63.2 |
| MsG0280006562.01.T02 | AT4G04950 | 34.146 | 82 | 54 | 0 | 31 | 112 | 21 | 102 | 4.09e-13 | 65.1 |
| MsG0280006562.01.T02 | AT1G52990 | 30.208 | 96 | 66 | 1 | 22 | 116 | 218 | 313 | 4.86e-13 | 64.3 |
| MsG0280006562.01.T02 | AT3G15360 | 36.047 | 86 | 53 | 2 | 33 | 116 | 106 | 191 | 7.74e-13 | 62.4 |
| MsG0280006562.01.T02 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 1.35e-12 | 62.0 |
| MsG0280006562.01.T02 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 1.35e-12 | 62.0 |
| MsG0280006562.01.T02 | AT3G53220 | 30.864 | 81 | 54 | 1 | 32 | 112 | 44 | 122 | 7.35e-12 | 58.5 |
| MsG0280006562.01.T02 | AT1G31020 | 28.829 | 111 | 77 | 1 | 5 | 113 | 45 | 155 | 1.29e-11 | 58.5 |
| MsG0280006562.01.T01 | AT1G11530 | 67.857 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 2.83e-53 | 163 |
| MsG0280006562.01.T01 | AT3G51030 | 41.905 | 105 | 61 | 0 | 8 | 112 | 5 | 109 | 4.52e-27 | 97.1 |
| MsG0280006562.01.T01 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.73e-25 | 94.0 |
| MsG0280006562.01.T01 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.73e-25 | 94.0 |
| MsG0280006562.01.T01 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.01e-25 | 93.6 |
| MsG0280006562.01.T01 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.01e-25 | 93.6 |
| MsG0280006562.01.T01 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.01e-25 | 93.6 |
| MsG0280006562.01.T01 | AT3G08710 | 34.746 | 118 | 77 | 0 | 1 | 118 | 15 | 132 | 9.30e-24 | 89.4 |
| MsG0280006562.01.T01 | AT3G08710 | 34.746 | 118 | 77 | 0 | 1 | 118 | 15 | 132 | 9.30e-24 | 89.4 |
| MsG0280006562.01.T01 | AT3G08710 | 34.746 | 118 | 77 | 0 | 1 | 118 | 15 | 132 | 9.30e-24 | 89.4 |
| MsG0280006562.01.T01 | AT5G39950 | 36.111 | 108 | 69 | 0 | 5 | 112 | 21 | 128 | 1.70e-22 | 85.9 |
| MsG0280006562.01.T01 | AT1G45145 | 35.849 | 106 | 68 | 0 | 7 | 112 | 3 | 108 | 2.53e-22 | 85.1 |
| MsG0280006562.01.T01 | AT1G59730 | 38.835 | 103 | 63 | 0 | 11 | 113 | 23 | 125 | 3.41e-21 | 82.8 |
| MsG0280006562.01.T01 | AT1G19730 | 36.792 | 106 | 66 | 1 | 8 | 112 | 5 | 110 | 4.72e-21 | 82.0 |
| MsG0280006562.01.T01 | AT5G42980 | 34.906 | 106 | 69 | 0 | 8 | 113 | 4 | 109 | 1.64e-19 | 78.2 |
| MsG0280006562.01.T01 | AT1G69880 | 29.464 | 112 | 79 | 0 | 7 | 118 | 35 | 146 | 3.65e-18 | 75.5 |
| MsG0280006562.01.T01 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 261 | 366 | 5.66e-17 | 75.5 |
| MsG0280006562.01.T01 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 268 | 373 | 6.19e-17 | 75.5 |
| MsG0280006562.01.T01 | AT1G43560 | 34.066 | 91 | 58 | 2 | 29 | 117 | 74 | 164 | 1.46e-13 | 63.9 |
| MsG0280006562.01.T01 | AT1G76760 | 33.333 | 87 | 56 | 2 | 29 | 113 | 79 | 165 | 2.44e-13 | 63.5 |
| MsG0280006562.01.T01 | AT4G32580 | 32.143 | 84 | 57 | 0 | 29 | 112 | 19 | 102 | 2.45e-13 | 63.2 |
| MsG0280006562.01.T01 | AT4G04950 | 34.146 | 82 | 54 | 0 | 31 | 112 | 21 | 102 | 4.09e-13 | 65.1 |
| MsG0280006562.01.T01 | AT1G52990 | 30.208 | 96 | 66 | 1 | 22 | 116 | 218 | 313 | 4.86e-13 | 64.3 |
| MsG0280006562.01.T01 | AT3G15360 | 36.047 | 86 | 53 | 2 | 33 | 116 | 106 | 191 | 7.74e-13 | 62.4 |
| MsG0280006562.01.T01 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 1.35e-12 | 62.0 |
| MsG0280006562.01.T01 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 1.35e-12 | 62.0 |
| MsG0280006562.01.T01 | AT3G53220 | 30.864 | 81 | 54 | 1 | 32 | 112 | 44 | 122 | 7.35e-12 | 58.5 |
| MsG0280006562.01.T01 | AT1G31020 | 28.829 | 111 | 77 | 1 | 5 | 113 | 45 | 155 | 1.29e-11 | 58.5 |
Find 11 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGATGAGATCCTTGTTT+AGG | 0.262753 | 2:-3473151 | MsG0280006562.01.T01:five_prime_UTR |
| TAAGATGAGATCCTTGTTTA+GGG | 0.319943 | 2:-3473150 | MsG0280006562.01.T01:five_prime_UTR |
| GAGAATTCTGATTAGAAGCT+TGG | 0.402282 | 2:+3472894 | None:intergenic |
| ATTCGTCAAGTAAAAGTTGA+AGG | 0.474921 | 2:-3473000 | MsG0280006562.01.T01:five_prime_UTR |
| TGATTGATTCTTTGCAATCA+TGG | 0.482171 | 2:-3472931 | MsG0280006562.01.T01:CDS |
| AGAATCAATCATCACTACCT+TGG | 0.535224 | 2:+3472943 | None:intergenic |
| GATTGATTCTTTGCAATCAT+GGG | 0.545217 | 2:-3472930 | MsG0280006562.01.T01:CDS |
| AGATGAGATCCTTGTTTAGG+GGG | 0.556096 | 2:-3473148 | MsG0280006562.01.T01:five_prime_UTR |
| AAGTTGAAGGAAGATTCAAA+TGG | 0.589010 | 2:-3472987 | MsG0280006562.01.T01:exon |
| CATAGAGCAAAACAAGTCCA+AGG | 0.613866 | 2:-3472960 | MsG0280006562.01.T01:CDS |
| AAGATGAGATCCTTGTTTAG+GGG | 0.682836 | 2:-3473149 | MsG0280006562.01.T01:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTATTGAATTTTTTTTT+GGG | - | Chr2:3472631-3472650 | MsG0280006562.01.T01:intron | 10.0% |
| !!! | TAATGTATTGAATTTTTTTT+TGG | - | Chr2:3472630-3472649 | MsG0280006562.01.T01:intron | 10.0% |
| !! | TAATATCTATAAGTTAATCA+AGG | + | Chr2:3473093-3473112 | None:intergenic | 15.0% |
| !!! | ACAAATCAAATATACAATTT+TGG | + | Chr2:3473017-3473036 | None:intergenic | 15.0% |
| !!! | TGATTTAAAGTTATGTTTAT+TGG | - | Chr2:3473067-3473086 | MsG0280006562.01.T01:intron | 15.0% |
| !! | AAAATAAAAACAGCATTATC+TGG | - | Chr2:3471863-3471882 | MsG0280006562.01.T01:intron | 20.0% |
| !! | ATAAAACATCACAAATGAAA+AGG | + | Chr2:3472910-3472929 | None:intergenic | 20.0% |
| !! | GACTGTTTATAAAGAATTAA+AGG | + | Chr2:3471109-3471128 | None:intergenic | 20.0% |
| !! | GGAATATTTAAAAACAAAGA+TGG | + | Chr2:3471811-3471830 | None:intergenic | 20.0% |
| !! | TATGATATATGAGAACATTA+TGG | - | Chr2:3471528-3471547 | MsG0280006562.01.T01:intron | 20.0% |
| !!! | ATTATATGACTGAATTTTGT+TGG | + | Chr2:3471646-3471665 | None:intergenic | 20.0% |
| !!! | TAATGCTGTTTTTATTTTCA+AGG | + | Chr2:3471861-3471880 | None:intergenic | 20.0% |
| !!! | TTAGTATCCAATTTTGTTTA+AGG | - | Chr2:3470868-3470887 | MsG0280006562.01.T01:three_prime_UTR | 20.0% |
| !!! | TTGATTTGTTTTTTATGTTG+TGG | - | Chr2:3473028-3473047 | MsG0280006562.01.T01:intron | 20.0% |
| ! | ATGATATATGAGAACATCAT+TGG | - | Chr2:3471474-3471493 | MsG0280006562.01.T01:intron | 25.0% |
| ! | ATTCTCTACAAATATAAACC+GGG | - | Chr2:3472044-3472063 | MsG0280006562.01.T01:intron | 25.0% |
| ! | GATTCTCTACAAATATAAAC+CGG | - | Chr2:3472043-3472062 | MsG0280006562.01.T01:intron | 25.0% |
| ! | GGATTTGAATATCTTATATC+TGG | - | Chr2:3472075-3472094 | MsG0280006562.01.T01:intron | 25.0% |
| ! | TACAAGAATTGAAAACAGAT+GGG | + | Chr2:3471306-3471325 | None:intergenic | 25.0% |
| ! | TATCTATATCCAACAGTAAA+AGG | + | Chr2:3471508-3471527 | None:intergenic | 25.0% |
| ! | TCATATCTATATCCACAAAA+AGG | + | Chr2:3471458-3471477 | None:intergenic | 25.0% |
| ! | TGATGTGTTTAGATATGTAA+TGG | + | Chr2:3471383-3471402 | None:intergenic | 25.0% |
| ! | TTTAGATATGTAATGGTACT+AGG | + | Chr2:3471376-3471395 | None:intergenic | 25.0% |
| !! | ATATCTTATATCTGGCTTAA+AGG | - | Chr2:3472083-3472102 | MsG0280006562.01.T01:intron | 25.0% |
| !! | ATTATTTTCATCAACGGATA+AGG | + | Chr2:3470819-3470838 | None:intergenic | 25.0% |
| !! | CGTTACATTATTTTCATCAA+CGG | + | Chr2:3470825-3470844 | None:intergenic | 25.0% |
| !! | CTGTTTTCCTTAAACAAAAT+TGG | + | Chr2:3470878-3470897 | None:intergenic | 25.0% |
| !! | TATCTTATATCTGGCTTAAA+GGG | - | Chr2:3472084-3472103 | MsG0280006562.01.T01:intron | 25.0% |
| !!! | CGTTTTAGAATACAAGTTAT+AGG | + | Chr2:3472435-3472454 | None:intergenic | 25.0% |
| !!! | GTATTGAATTTTTTTTTGGG+CGG | - | Chr2:3472634-3472653 | MsG0280006562.01.T01:intron | 25.0% |
| AAAAACAGCATTATCTGGTT+TGG | - | Chr2:3471868-3471887 | MsG0280006562.01.T01:intron | 30.0% | |
| AAGTTGAAGGAAGATTCAAA+TGG | - | Chr2:3470950-3470969 | MsG0280006562.01.T01:three_prime_UTR | 30.0% | |
| ATATCCAACAGTAAAAGGTT+TGG | + | Chr2:3471503-3471522 | None:intergenic | 30.0% | |
| ATGGTATCAGTACAGAATTT+AGG | + | Chr2:3471911-3471930 | None:intergenic | 30.0% | |
| ATTCGTCAAGTAAAAGTTGA+AGG | - | Chr2:3470937-3470956 | MsG0280006562.01.T01:three_prime_UTR | 30.0% | |
| CATTACTTAGTTGACATTTC+AGG | - | Chr2:3472231-3472250 | MsG0280006562.01.T01:intron | 30.0% | |
| CTACAAGAATTGAAAACAGA+TGG | + | Chr2:3471307-3471326 | None:intergenic | 30.0% | |
| GAGATTAAGAAAAGGATAGA+GGG | - | Chr2:3472758-3472777 | MsG0280006562.01.T01:CDS | 30.0% | |
| TAAATAAGATGATAGCAGAC+AGG | + | Chr2:3470851-3470870 | None:intergenic | 30.0% | |
| TAGCTCAATGCTTAAGTTAA+TGG | - | Chr2:3472963-3472982 | MsG0280006562.01.T01:CDS | 30.0% | |
| TCGAGTCAAAATCAATAGTA+CGG | + | Chr2:3472159-3472178 | None:intergenic | 30.0% | |
| TGGTATCAGTACAGAATTTA+GGG | + | Chr2:3471910-3471929 | None:intergenic | 30.0% | |
| TTGTAGAGAATCAATTTCAG+TGG | + | Chr2:3472035-3472054 | None:intergenic | 30.0% | |
| TTTGAATTGAAGTCAACAGA+TGG | - | Chr2:3472299-3472318 | MsG0280006562.01.T01:intron | 30.0% | |
| ! | ACATTGAAACTTTGACTTAC+AGG | + | Chr2:3471068-3471087 | None:intergenic | 30.0% |
| ! | ATCTTATATCTGGCTTAAAG+GGG | - | Chr2:3472085-3472104 | MsG0280006562.01.T01:intron | 30.0% |
| ! | GATTGATTCTTTGCAATCAT+GGG | - | Chr2:3471007-3471026 | MsG0280006562.01.T01:three_prime_UTR | 30.0% |
| ! | TGATTGATTCTTTGCAATCA+TGG | - | Chr2:3471006-3471025 | MsG0280006562.01.T01:three_prime_UTR | 30.0% |
| ! | TGGAAATCAAAACCTTTTTG+TGG | - | Chr2:3471443-3471462 | MsG0280006562.01.T01:intron | 30.0% |
| ! | TTCAAGTTCCAATTTCCAAT+TGG | + | Chr2:3471776-3471795 | None:intergenic | 30.0% |
| !! | TAACTTAAGCATTGAGCTAA+CGG | + | Chr2:3472962-3472981 | None:intergenic | 30.0% |
| !! | TTGGAACTTGAATTTTAGAG+AGG | - | Chr2:3471784-3471803 | MsG0280006562.01.T01:intron | 30.0% |
| !!! | TTACGGTGATTAGGTTTTTT+TGG | - | Chr2:3471712-3471731 | MsG0280006562.01.T01:intron | 30.0% |
| AATGCTCAGAAACAGATTGT+TGG | - | Chr2:3472337-3472356 | MsG0280006562.01.T01:intron | 35.0% | |
| ACAGAGAGAAACAGAAAATC+TGG | + | Chr2:3471251-3471270 | None:intergenic | 35.0% | |
| ACTGAGTCTATTGCATAACA+TGG | + | Chr2:3472002-3472021 | None:intergenic | 35.0% | |
| ACTTGGGATACTGTTCTTTA+TGG | + | Chr2:3471930-3471949 | None:intergenic | 35.0% | |
| AGAATCAATCATCACTACCT+TGG | + | Chr2:3470997-3471016 | None:intergenic | 35.0% | |
| AGTGTCTATTGCATAGTGTT+TGG | - | Chr2:3471672-3471691 | MsG0280006562.01.T01:intron | 35.0% | |
| ATCATACAGAAGCTTGTACT+AGG | + | Chr2:3472813-3472832 | None:intergenic | 35.0% | |
| ATCCAGAGGAGATTAAGAAA+AGG | - | Chr2:3472750-3472769 | MsG0280006562.01.T01:CDS | 35.0% | |
| ATGGAAATCCGACATCATTA+CGG | - | Chr2:3471695-3471714 | MsG0280006562.01.T01:intron | 35.0% | |
| CAGTTGCAACTTGTAGTAAA+AGG | + | Chr2:3471618-3471637 | None:intergenic | 35.0% | |
| CATTGCCTTTATATCATTCC+TGG | + | Chr2:3472675-3472694 | None:intergenic | 35.0% | |
| GAGAATTCTGATTAGAAGCT+TGG | + | Chr2:3471046-3471065 | None:intergenic | 35.0% | |
| GATGCGAATTCTTCGAAAAA+TGG | + | Chr2:3471221-3471240 | None:intergenic | 35.0% | |
| GGAGATTAAGAAAAGGATAG+AGG | - | Chr2:3472757-3472776 | MsG0280006562.01.T01:CDS | 35.0% | |
| TAACTTATGATACGTCTTGC+AGG | - | Chr2:3472114-3472133 | MsG0280006562.01.T01:intron | 35.0% | |
| TCCTTCAGCAACAAAAATGT+TGG | + | Chr2:3472698-3472717 | None:intergenic | 35.0% | |
| TCTATTGCATAGTGTTTGGA+TGG | - | Chr2:3471676-3471695 | MsG0280006562.01.T01:intron | 35.0% | |
| TGCAGGTACAAAAAACCAAT+GGG | - | Chr2:3472131-3472150 | MsG0280006562.01.T01:intron | 35.0% | |
| TTCTACGCGCATAACTAATA+TGG | - | Chr2:3472464-3472483 | MsG0280006562.01.T01:intron | 35.0% | |
| TTGCAGGTACAAAAAACCAA+TGG | - | Chr2:3472130-3472149 | MsG0280006562.01.T01:intron | 35.0% | |
| TTGGAGAGAATCTGATTGTA+TGG | - | Chr2:3471731-3471750 | MsG0280006562.01.T01:intron | 35.0% | |
| TTGTTCACTTTACTGCTTCA+TGG | - | Chr2:3471171-3471190 | MsG0280006562.01.T01:CDS | 35.0% | |
| ! | AAGATGAGATCCTTGTTTAG+GGG | - | Chr2:3470788-3470807 | MsG0280006562.01.T01:intron | 35.0% |
| ! | ACATTTTTGTTGCTGAAGGA+TGG | - | Chr2:3472698-3472717 | MsG0280006562.01.T01:CDS | 35.0% |
| ! | AGAACTAAGAAGTGTGTTTG+TGG | - | Chr2:3472857-3472876 | MsG0280006562.01.T01:intron | 35.0% |
| ! | ATCCTTTTCTTAATCTCCTC+TGG | + | Chr2:3472755-3472774 | None:intergenic | 35.0% |
| ! | GAATCCAAACCTTTTACTGT+TGG | - | Chr2:3471496-3471515 | MsG0280006562.01.T01:intron | 35.0% |
| ! | TCTCATTGATCATGTCACTT+GGG | + | Chr2:3471946-3471965 | None:intergenic | 35.0% |
| ! | TGTTGATGTTGATGAAGTCA+AGG | - | Chr2:3471268-3471287 | MsG0280006562.01.T01:CDS | 35.0% |
| ! | TTATGGTGCCAATTGGAAAT+TGG | - | Chr2:3471765-3471784 | MsG0280006562.01.T01:intron | 35.0% |
| !! | ACAATCTGTTTCTGAGCATT+AGG | + | Chr2:3472337-3472356 | None:intergenic | 35.0% |
| !! | CAATCTGTTTCTGAGCATTA+GGG | + | Chr2:3472336-3472355 | None:intergenic | 35.0% |
| !! | CAGTCTTCAAATTGATTTGC+TGG | - | Chr2:3471124-3471143 | MsG0280006562.01.T01:three_prime_UTR | 35.0% |
| !!! | AATTTTTTTTTGGGCGGTTC+AGG | - | Chr2:3472640-3472659 | MsG0280006562.01.T01:intron | 35.0% |
| !!! | TTCCTGTGTTATTTTCATGC+CGG | - | Chr2:3472535-3472554 | MsG0280006562.01.T01:intron | 35.0% |
| AAAGGAAGAGCTCAATTCAC+AGG | + | Chr2:3472370-3472389 | None:intergenic | 40.0% | |
| AATATAAACCGGGAGGATGA+TGG | - | Chr2:3472054-3472073 | MsG0280006562.01.T01:intron | 40.0% | |
| AATGGAATCATAGCCACTGA+TGG | + | Chr2:3471203-3471222 | None:intergenic | 40.0% | |
| AGAATCTGATTGTATGGCGA+AGG | - | Chr2:3471737-3471756 | MsG0280006562.01.T01:intron | 40.0% | |
| ATCAATAGTACGGTTCCCAT+TGG | + | Chr2:3472149-3472168 | None:intergenic | 40.0% | |
| ATTCAAATCCATCATCCTCC+CGG | + | Chr2:3472065-3472084 | None:intergenic | 40.0% | |
| ATTCCTCACGAGCAACTAAA+TGG | - | Chr2:3471826-3471845 | MsG0280006562.01.T01:intron | 40.0% | |
| CAGTCAACTTTCTGTTTGAG+TGG | - | Chr2:3471423-3471442 | MsG0280006562.01.T01:intron | 40.0% | |
| CATAGAGCAAAACAAGTCCA+AGG | - | Chr2:3470977-3470996 | MsG0280006562.01.T01:three_prime_UTR | 40.0% | |
| CCTAATCACCGTAATGATGT+CGG | + | Chr2:3471706-3471725 | None:intergenic | 40.0% | |
| CTCTACAAATATAAACCGGG+AGG | - | Chr2:3472047-3472066 | MsG0280006562.01.T01:intron | 40.0% | |
| CTCTCATTGATCATGTCACT+TGG | + | Chr2:3471947-3471966 | None:intergenic | 40.0% | |
| CTCTGATACCATCCAAAGAA+CGG | - | Chr2:3472192-3472211 | MsG0280006562.01.T01:intron | 40.0% | |
| TGAGCAAGATGCTATAGTAC+AGG | + | Chr2:3472884-3472903 | None:intergenic | 40.0% | |
| TGCAATAGACTCAGTCTTTG+CGG | - | Chr2:3472007-3472026 | MsG0280006562.01.T01:intron | 40.0% | |
| TGCCTTTATATCATTCCTGG+TGG | + | Chr2:3472672-3472691 | None:intergenic | 40.0% | |
| TTAGTTATGCGCGTAGAACA+CGG | + | Chr2:3472462-3472481 | None:intergenic | 40.0% | |
| TTGACACGAGAGACGATAAA+AGG | + | Chr2:3472388-3472407 | None:intergenic | 40.0% | |
| ! | AGATGAGATCCTTGTTTAGG+GGG | - | Chr2:3470789-3470808 | MsG0280006562.01.T01:intron | 40.0% |
| ! | GCCAACATTTTTGTTGCTGA+AGG | - | Chr2:3472694-3472713 | MsG0280006562.01.T01:CDS | 40.0% |
| !!! | CTTGGACTTGTTTTGCTCTA+TGG | + | Chr2:3470979-3470998 | None:intergenic | 40.0% |
| CAACCATTTAGTTGCTCGTG+AGG | + | Chr2:3471832-3471851 | None:intergenic | 45.0% | |
| CATCCAAAGAACGGATGGAA+AGG | - | Chr2:3472201-3472220 | MsG0280006562.01.T01:intron | 45.0% | |
| CATCCTTTCCATCCGTTCTT+TGG | + | Chr2:3472207-3472226 | None:intergenic | 45.0% | |
| CCGACATCATTACGGTGATT+AGG | - | Chr2:3471703-3471722 | MsG0280006562.01.T01:intron | 45.0% | |
| CTCCGGCATGAAAATAACAC+AGG | + | Chr2:3472540-3472559 | None:intergenic | 45.0% | |
| CTTTCCATCCGTTCTTTGGA+TGG | + | Chr2:3472203-3472222 | None:intergenic | 45.0% | |
| GATACCATCCAAAGAACGGA+TGG | - | Chr2:3472196-3472215 | MsG0280006562.01.T01:intron | 45.0% | |
| GCACCAACTATCTTGTCCAA+TGG | + | Chr2:3472728-3472747 | None:intergenic | 45.0% | |
| GCTCCATTGGACAAGATAGT+TGG | - | Chr2:3472722-3472741 | MsG0280006562.01.T01:CDS | 45.0% | |
| GGCCACCAGGAATGATATAA+AGG | - | Chr2:3472667-3472686 | MsG0280006562.01.T01:intron | 45.0% | |
| TAAGGACAACCCCCTAAACA+AGG | + | Chr2:3470801-3470820 | None:intergenic | 45.0% | |
| ! | AGCATTGAGCTAACGGAACT+AGG | + | Chr2:3472955-3472974 | None:intergenic | 45.0% |
| !! | GATAGTTGGTGCTAATCCAG+AGG | - | Chr2:3472736-3472755 | MsG0280006562.01.T01:CDS | 45.0% |
| !!! | CTGTGTTATTTTCATGCCGG+AGG | - | Chr2:3472538-3472557 | MsG0280006562.01.T01:intron | 45.0% |
| !!! | TTTTTTTTGGGCGGTTCAGG+AGG | - | Chr2:3472643-3472662 | MsG0280006562.01.T01:intron | 45.0% |
| ATGTAGCCCACCACACTAGT+GGG | - | Chr2:3471564-3471583 | MsG0280006562.01.T01:intron | 50.0% | |
| TTCATGGTGCATGCCATCAG+TGG | - | Chr2:3471187-3471206 | MsG0280006562.01.T01:CDS | 50.0% | |
| ! | CTTTTCTGTCTCAGTGCCTC+CGG | + | Chr2:3472557-3472576 | None:intergenic | 50.0% |
| ! | GGCTTGCTTATGGTGCCAAT+TGG | - | Chr2:3471758-3471777 | MsG0280006562.01.T01:intron | 50.0% |
| ! | GTATGGCGAAGGCTTGCTTA+TGG | - | Chr2:3471748-3471767 | MsG0280006562.01.T01:intron | 50.0% |
| CATGTAGCCCACCACACTAG+TGG | - | Chr2:3471563-3471582 | MsG0280006562.01.T01:intron | 55.0% | |
| CCTTGTCCCACTAGTGTGGT+GGG | + | Chr2:3471573-3471592 | None:intergenic | 55.0% | |
| GCTGAAGGATGGTGCTCCAT+TGG | - | Chr2:3472709-3472728 | MsG0280006562.01.T01:CDS | 55.0% | |
| ! | GAAGCCTTGTCCCACTAGTG+TGG | + | Chr2:3471577-3471596 | None:intergenic | 55.0% |
| !! | TTTTTGGGCGGTTCAGGAGG+TGG | - | Chr2:3472646-3472665 | MsG0280006562.01.T01:intron | 55.0% |
| CCCACCACACTAGTGGGACA+AGG | - | Chr2:3471570-3471589 | MsG0280006562.01.T01:intron | 60.0% | |
| GCCTTGTCCCACTAGTGTGG+TGG | + | Chr2:3471574-3471593 | None:intergenic | 60.0% | |
| CGGTTCAGGAGGTGGCCACC+AGG | - | Chr2:3472654-3472673 | MsG0280006562.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 3470788 | 3473171 | 3470788 | ID=MsG0280006562.01;Name=MsG0280006562.01 |
| Chr2 | mRNA | 3470788 | 3473171 | 3470788 | ID=MsG0280006562.01.T01;Parent=MsG0280006562.01;Name=MsG0280006562.01.T01;_AED=0.38;_eAED=0.38;_QI=84|1|1|1|0.5|0.2|5|319|124 |
| Chr2 | exon | 3472892 | 3473023 | 3472892 | ID=MsG0280006562.01.T01:exon:1691;Parent=MsG0280006562.01.T01 |
| Chr2 | exon | 3473121 | 3473171 | 3473121 | ID=MsG0280006562.01.T01:exon:1690;Parent=MsG0280006562.01.T01 |
| Chr2 | five_prime_UTR | 3473121 | 3473171 | 3473121 | ID=MsG0280006562.01.T01:five_prime_utr;Parent=MsG0280006562.01.T01 |
| Chr2 | five_prime_UTR | 3472991 | 3473023 | 3472991 | ID=MsG0280006562.01.T01:five_prime_utr;Parent=MsG0280006562.01.T01 |
| Chr2 | CDS | 3472892 | 3472990 | 3472892 | ID=MsG0280006562.01.T01:cds;Parent=MsG0280006562.01.T01 |
| Chr2 | CDS | 3472670 | 3472792 | 3472670 | ID=MsG0280006562.01.T01:cds;Parent=MsG0280006562.01.T01 |
| Chr2 | CDS | 3471145 | 3471297 | 3471145 | ID=MsG0280006562.01.T01:cds;Parent=MsG0280006562.01.T01 |
| Chr2 | three_prime_UTR | 3470840 | 3471144 | 3470840 | ID=MsG0280006562.01.T01:three_prime_utr;Parent=MsG0280006562.01.T01 |
| Chr2 | three_prime_UTR | 3470788 | 3470801 | 3470788 | ID=MsG0280006562.01.T01:three_prime_utr;Parent=MsG0280006562.01.T01 |
| Chr2 | mRNA | 3470788 | 3473063 | 3470788 | ID=MsG0280006562.01.T02;Parent=MsG0280006562.01;Name=MsG0280006562.01.T02;_AED=0.38;_eAED=0.38;_QI=73|1|1|1|0.66|0.5|4|319|124 |
| Chr2 | exon | 3472892 | 3473063 | 3472892 | ID=MsG0280006562.01.T02:exon:1695;Parent=MsG0280006562.01.T02 |
| Chr2 | five_prime_UTR | 3472991 | 3473063 | 3472991 | ID=MsG0280006562.01.T02:five_prime_utr;Parent=MsG0280006562.01.T02 |
| Chr2 | CDS | 3472892 | 3472990 | 3472892 | ID=MsG0280006562.01.T02:cds;Parent=MsG0280006562.01.T02 |
| Chr2 | CDS | 3472670 | 3472792 | 3472670 | ID=MsG0280006562.01.T02:cds;Parent=MsG0280006562.01.T02 |
| Chr2 | CDS | 3471145 | 3471297 | 3471145 | ID=MsG0280006562.01.T02:cds;Parent=MsG0280006562.01.T02 |
| Chr2 | three_prime_UTR | 3470840 | 3471144 | 3470840 | ID=MsG0280006562.01.T02:three_prime_utr;Parent=MsG0280006562.01.T02 |
| Chr2 | three_prime_UTR | 3470788 | 3470801 | 3470788 | ID=MsG0280006562.01.T02:three_prime_utr;Parent=MsG0280006562.01.T02 |
| Gene Sequence |
| Protein sequence |
