Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026027.01.T01 | XP_003613548.1 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 1.03E-88 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026027.01.T01 | Q38879 | 46.923 | 130 | 64 | 1 | 1 | 125 | 1 | 130 | 1.35E-41 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049008.01 | MsG0580026027.01 | 0.808794 | 2.599418e-50 | 1.500121e-47 |
| MsG0180006182.01 | MsG0580026027.01 | 0.813889 | 2.036925e-51 | 1.346582e-48 |
| MsG0180006191.01 | MsG0580026027.01 | 0.840787 | 7.043329e-58 | 1.014221e-54 |
| MsG0380013041.01 | MsG0580026027.01 | 0.826183 | 3.120336e-54 | 2.905168e-51 |
| MsG0480022407.01 | MsG0580026027.01 | 0.802786 | 4.756108e-49 | 2.350601e-46 |
| MsG0480023322.01 | MsG0580026027.01 | 0.810470 | 1.134584e-50 | 6.844954e-48 |
| MsG0480023944.01 | MsG0580026027.01 | 0.810963 | 8.877209e-51 | 5.427049e-48 |
| MsG0580025620.01 | MsG0580026027.01 | 0.843144 | 1.678583e-58 | 2.601788e-55 |
| MsG0580026027.01 | MsG0580028565.01 | 0.814986 | 1.165156e-51 | 7.934432e-49 |
| MsG0580026027.01 | MsG0680030635.01 | -0.804741 | 1.867176e-49 | 9.703680e-47 |
| MsG0580026027.01 | MsG0780038810.01 | 0.823993 | 1.026566e-53 | 8.978380e-51 |
| MsG0580026027.01 | MsG0780039916.01 | 0.828443 | 8.963827e-55 | 8.911452e-52 |
| MsG0580026027.01 | MsG0780041180.01 | 0.844365 | 7.909567e-59 | 1.273923e-55 |
| MsG0580026027.01 | MsG0880044688.01 | 0.821611 | 3.683163e-53 | 3.010911e-50 |
| MsG0580026027.01 | MsG0880045645.01 | 0.812697 | 3.721257e-51 | 2.382277e-48 |
| MsG0580026027.01 | MsG0880045963.01 | 0.818761 | 1.655686e-52 | 1.250485e-49 |
| MsG0580026027.01 | MsG0880046137.01 | 0.812561 | 3.985574e-51 | 2.542339e-48 |
| MsG0580026027.01 | MsG0880046932.01 | 0.800207 | 1.606075e-48 | 7.434529e-46 |
| MsG0580026027.01 | MsG0880047057.01 | 0.811149 | 8.088286e-51 | 4.968631e-48 |
| MsG0380016372.01 | MsG0580026027.01 | 0.800514 | 1.390862e-48 | 6.488679e-46 |
| MsG0380016485.01 | MsG0580026027.01 | 0.827548 | 1.472179e-54 | 1.425746e-51 |
| MsG0380017898.01 | MsG0580026027.01 | 0.822472 | 2.326497e-53 | 1.949179e-50 |
| MsG0280007427.01 | MsG0580026027.01 | 0.841003 | 6.182029e-58 | 8.960685e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580026027.01 | MsG0280006562.01 | PPI |
| MsG0580026027.01 | MsG0280006562.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026027.01.T01 | MTR_5g037930 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 1.24e-92 | 263 |
| MsG0580026027.01.T01 | MTR_5g037950 | 73.228 | 127 | 33 | 1 | 1 | 127 | 1 | 126 | 1.12e-54 | 167 |
| MsG0580026027.01.T01 | MTR_5g037890 | 68.750 | 128 | 38 | 1 | 1 | 128 | 1 | 126 | 6.31e-54 | 165 |
| MsG0580026027.01.T01 | MTR_7g009070 | 59.615 | 104 | 42 | 0 | 24 | 127 | 30 | 133 | 2.03e-44 | 142 |
| MsG0580026027.01.T01 | MTR_3g112410 | 47.664 | 107 | 56 | 0 | 20 | 126 | 6 | 112 | 8.67e-37 | 122 |
| MsG0580026027.01.T01 | MTR_1g023140 | 46.296 | 108 | 58 | 0 | 21 | 128 | 7 | 114 | 3.15e-36 | 120 |
| MsG0580026027.01.T01 | MTR_5g021180 | 42.478 | 113 | 65 | 0 | 14 | 126 | 2 | 114 | 9.52e-35 | 117 |
| MsG0580026027.01.T01 | MTR_8g107460 | 41.509 | 106 | 62 | 0 | 21 | 126 | 255 | 360 | 6.61e-28 | 105 |
| MsG0580026027.01.T01 | MTR_2g010750 | 38.095 | 105 | 65 | 0 | 20 | 124 | 9 | 113 | 2.11e-23 | 88.2 |
| MsG0580026027.01.T01 | MTR_7g073680 | 40.659 | 91 | 54 | 0 | 31 | 121 | 35 | 125 | 5.40e-22 | 85.1 |
| MsG0580026027.01.T01 | MTR_8g005320 | 35.238 | 105 | 68 | 0 | 19 | 123 | 25 | 129 | 8.15e-22 | 84.7 |
| MsG0580026027.01.T01 | MTR_8g006685 | 38.710 | 93 | 57 | 0 | 31 | 123 | 106 | 198 | 2.94e-21 | 85.1 |
| MsG0580026027.01.T01 | MTR_8g006560 | 38.710 | 93 | 57 | 0 | 31 | 123 | 106 | 198 | 2.94e-21 | 85.1 |
| MsG0580026027.01.T01 | MTR_2g082590 | 32.381 | 105 | 71 | 0 | 20 | 124 | 10 | 114 | 6.08e-21 | 82.0 |
| MsG0580026027.01.T01 | MTR_4g081380 | 37.273 | 110 | 67 | 2 | 20 | 128 | 10 | 118 | 1.41e-20 | 80.9 |
| MsG0580026027.01.T01 | MTR_2g082590 | 37.209 | 86 | 54 | 0 | 39 | 124 | 42 | 127 | 7.03e-19 | 77.0 |
| MsG0580026027.01.T01 | MTR_4g094690 | 36.585 | 82 | 50 | 1 | 46 | 125 | 85 | 166 | 2.33e-16 | 71.2 |
| MsG0580026027.01.T01 | MTR_1g098660 | 31.250 | 96 | 63 | 2 | 31 | 125 | 67 | 160 | 2.47e-16 | 71.2 |
| MsG0580026027.01.T01 | MTR_2g079420 | 37.500 | 88 | 53 | 2 | 40 | 125 | 84 | 171 | 2.38e-14 | 66.2 |
| MsG0580026027.01.T01 | MTR_8g059015 | 35.227 | 88 | 55 | 2 | 40 | 125 | 87 | 174 | 6.51e-14 | 65.1 |
| MsG0580026027.01.T01 | MTR_3g089065 | 32.143 | 84 | 55 | 2 | 45 | 126 | 89 | 172 | 3.15e-13 | 63.2 |
| MsG0580026027.01.T01 | MTR_7g080250 | 35.443 | 79 | 50 | 1 | 42 | 119 | 94 | 172 | 4.06e-13 | 63.2 |
| MsG0580026027.01.T01 | MTR_1g114290 | 32.911 | 79 | 49 | 2 | 40 | 117 | 84 | 159 | 5.73e-12 | 60.1 |
| MsG0580026027.01.T01 | MTR_4g085880 | 34.211 | 76 | 49 | 1 | 45 | 119 | 84 | 159 | 7.85e-12 | 59.3 |
| MsG0580026027.01.T01 | MTR_3g112400 | 30.928 | 97 | 47 | 3 | 20 | 116 | 5 | 81 | 2.95e-11 | 55.8 |
| MsG0580026027.01.T01 | MTR_2g079340 | 38.028 | 71 | 43 | 1 | 44 | 113 | 54 | 124 | 9.42e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026027.01.T01 | AT5G39950 | 46.923 | 130 | 64 | 1 | 1 | 125 | 1 | 130 | 1.37e-42 | 137 |
| MsG0580026027.01.T01 | AT1G59730 | 42.969 | 128 | 72 | 1 | 1 | 127 | 1 | 128 | 4.29e-38 | 125 |
| MsG0580026027.01.T01 | AT1G69880 | 49.074 | 108 | 55 | 0 | 19 | 126 | 36 | 143 | 1.94e-35 | 119 |
| MsG0580026027.01.T01 | AT5G42980 | 47.222 | 108 | 57 | 0 | 21 | 128 | 6 | 113 | 1.47e-34 | 116 |
| MsG0580026027.01.T01 | AT1G19730 | 49.533 | 107 | 53 | 1 | 21 | 126 | 7 | 113 | 1.84e-34 | 116 |
| MsG0580026027.01.T01 | AT3G51030 | 44.340 | 106 | 59 | 0 | 21 | 126 | 7 | 112 | 6.30e-34 | 114 |
| MsG0580026027.01.T01 | AT1G45145 | 44.860 | 107 | 59 | 0 | 20 | 126 | 5 | 111 | 7.99e-34 | 114 |
| MsG0580026027.01.T01 | AT3G17880 | 40.000 | 105 | 63 | 0 | 22 | 126 | 265 | 369 | 3.24e-25 | 98.2 |
| MsG0580026027.01.T01 | AT3G17880 | 39.623 | 106 | 64 | 0 | 21 | 126 | 271 | 376 | 4.10e-25 | 98.2 |
| MsG0580026027.01.T01 | AT3G56420 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.40e-23 | 89.7 |
| MsG0580026027.01.T01 | AT3G56420 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.40e-23 | 89.7 |
| MsG0580026027.01.T01 | AT3G56420 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.40e-23 | 89.7 |
| MsG0580026027.01.T01 | AT1G11530 | 34.286 | 105 | 69 | 0 | 20 | 124 | 2 | 106 | 9.24e-21 | 81.3 |
| MsG0580026027.01.T01 | AT2G40790 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.22e-19 | 79.3 |
| MsG0580026027.01.T01 | AT2G40790 | 39.130 | 92 | 56 | 0 | 30 | 121 | 50 | 141 | 1.22e-19 | 79.3 |
| MsG0580026027.01.T01 | AT3G08710 | 34.951 | 103 | 65 | 1 | 21 | 123 | 26 | 126 | 1.27e-19 | 79.0 |
| MsG0580026027.01.T01 | AT3G08710 | 34.951 | 103 | 65 | 1 | 21 | 123 | 26 | 126 | 1.27e-19 | 79.0 |
| MsG0580026027.01.T01 | AT3G08710 | 34.951 | 103 | 65 | 1 | 21 | 123 | 26 | 126 | 1.27e-19 | 79.0 |
| MsG0580026027.01.T01 | AT3G15360 | 37.363 | 91 | 49 | 3 | 40 | 125 | 102 | 189 | 4.50e-16 | 71.2 |
| MsG0580026027.01.T01 | AT1G43560 | 30.159 | 126 | 79 | 5 | 9 | 128 | 39 | 161 | 9.80e-16 | 69.7 |
| MsG0580026027.01.T01 | AT2G35010 | 38.554 | 83 | 47 | 2 | 46 | 125 | 110 | 191 | 1.69e-14 | 67.0 |
| MsG0580026027.01.T01 | AT2G35010 | 38.554 | 83 | 47 | 2 | 46 | 125 | 110 | 191 | 1.69e-14 | 67.0 |
| MsG0580026027.01.T01 | AT1G76760 | 33.333 | 75 | 49 | 1 | 41 | 114 | 80 | 154 | 2.27e-14 | 66.2 |
| MsG0580026027.01.T01 | AT4G03520 | 34.940 | 83 | 52 | 2 | 45 | 125 | 101 | 183 | 8.46e-14 | 65.1 |
| MsG0580026027.01.T01 | AT1G31020 | 30.556 | 108 | 73 | 1 | 20 | 125 | 49 | 156 | 9.99e-14 | 64.3 |
| MsG0580026027.01.T01 | AT1G03680 | 35.802 | 81 | 50 | 2 | 47 | 125 | 97 | 177 | 2.42e-13 | 63.5 |
| MsG0580026027.01.T01 | AT3G02730 | 35.632 | 87 | 55 | 1 | 43 | 128 | 88 | 174 | 2.96e-13 | 63.5 |
| MsG0580026027.01.T01 | AT5G16400 | 34.091 | 88 | 57 | 1 | 42 | 128 | 97 | 184 | 4.07e-13 | 63.2 |
| MsG0580026027.01.T01 | AT1G52990 | 31.522 | 92 | 61 | 2 | 36 | 126 | 222 | 312 | 7.86e-12 | 61.2 |
| MsG0580026027.01.T01 | AT4G04950 | 29.787 | 94 | 66 | 0 | 32 | 125 | 11 | 104 | 2.59e-11 | 60.1 |
| MsG0580026027.01.T01 | AT4G32580 | 27.660 | 94 | 68 | 0 | 32 | 125 | 11 | 104 | 7.95e-11 | 56.6 |
| MsG0580026027.01.T01 | AT2G15570 | 25.843 | 89 | 65 | 1 | 32 | 119 | 74 | 162 | 8.91e-11 | 56.6 |
| MsG0580026027.01.T01 | AT2G15570 | 25.843 | 89 | 65 | 1 | 32 | 119 | 75 | 163 | 9.63e-11 | 56.6 |
Find 25 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAGCTTGTTAGTTTCTT+TGG | 0.210380 | 5:+29338101 | None:intergenic |
| CCTTCCATTCCACTGCTAAA+TGG | 0.240816 | 5:-29338143 | MsG0580026027.01.T01:CDS |
| TAAGATGGTAATTGAATTTA+CGG | 0.284078 | 5:-29337986 | MsG0580026027.01.T01:intron |
| GATTGACGTGGATGAATTAA+TGG | 0.293121 | 5:-29337881 | MsG0580026027.01.T01:intron |
| GCAGCAAAGTCTTGAATGAT+TGG | 0.331944 | 5:+29337931 | None:intergenic |
| AAAGTTGTTGACAAGGTTGT+AGG | 0.405303 | 5:-29337263 | MsG0580026027.01.T01:CDS |
| CAGCTTGTTAGTTTCTTTGG+AGG | 0.429788 | 5:+29338104 | None:intergenic |
| TTCTTCATCAGTATGAATGT+TGG | 0.495900 | 5:+29337290 | None:intergenic |
| AAGTTGTTGACAAGGTTGTA+GGG | 0.506438 | 5:-29337262 | MsG0580026027.01.T01:CDS |
| CCTTCCATTTAGCAGTGGAA+TGG | 0.530623 | 5:+29338139 | None:intergenic |
| CTCCAAAGAAACTAACAAGC+TGG | 0.546462 | 5:-29338103 | MsG0580026027.01.T01:intron |
| GTGTGGACCTTGCAAATACA+TGG | 0.552168 | 5:-29337956 | MsG0580026027.01.T01:CDS |
| CCATTTAGCAGTGGAATGGA+AGG | 0.552428 | 5:+29338143 | None:intergenic |
| CCATTCCACTGCTAAATGGA+AGG | 0.553763 | 5:-29338139 | MsG0580026027.01.T01:CDS |
| ACATTCATACTGATGAAGAA+AGG | 0.574346 | 5:-29337287 | MsG0580026027.01.T01:CDS |
| ATTGGATCCATGTATTTGCA+AGG | 0.586486 | 5:+29337949 | None:intergenic |
| GGGAGGCAATTTATCCAACA+TGG | 0.596510 | 5:-29338211 | MsG0580026027.01.T01:CDS |
| GAATTTACGGCTGCATGGTG+TGG | 0.600755 | 5:-29337973 | MsG0580026027.01.T01:CDS |
| GAAAGGAAAAGTTGTTGACA+AGG | 0.605147 | 5:-29337270 | MsG0580026027.01.T01:CDS |
| AATTTATCCAACATGGAGCA+TGG | 0.613422 | 5:-29338204 | MsG0580026027.01.T01:CDS |
| ATAAGCCTTCCATTTAGCAG+TGG | 0.613671 | 5:+29338134 | None:intergenic |
| AGTTGTTGACAAGGTTGTAG+GGG | 0.631631 | 5:-29337261 | MsG0580026027.01.T01:CDS |
| TGTATGACCATGCTCCATGT+TGG | 0.633501 | 5:+29338197 | None:intergenic |
| AGATTTCATCAAGATTGACG+TGG | 0.662014 | 5:-29337893 | MsG0580026027.01.T01:CDS |
| TAATTGAATTTACGGCTGCA+TGG | 0.665704 | 5:-29337978 | MsG0580026027.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATATAATGTATAGA+TGG | + | Chr5:29337644-29337663 | None:intergenic | 15.0% |
| !!! | AGATGAACTTTTTTTTTAAA+CGG | - | Chr5:29337981-29338000 | MsG0580026027.01.T01:CDS | 15.0% |
| !!! | ATTATTTTTCAATTGTAAAC+AGG | - | Chr5:29338082-29338101 | MsG0580026027.01.T01:intron | 15.0% |
| !!! | TATACTCAAATGATTATTTT+AGG | + | Chr5:29337808-29337827 | None:intergenic | 15.0% |
| !!! | TTATTTTTCAATTGTAAACA+GGG | - | Chr5:29338083-29338102 | MsG0580026027.01.T01:intron | 15.0% |
| !! | ATAATTAATGTATCAAACTC+CGG | - | Chr5:29337825-29337844 | MsG0580026027.01.T01:intron | 20.0% |
| !! | TAAGATGGTAATTGAATTTA+CGG | - | Chr5:29337441-29337460 | MsG0580026027.01.T01:intron | 20.0% |
| !!! | AATACTGTTAAGTTGAATTA+AGG | + | Chr5:29337861-29337880 | None:intergenic | 20.0% |
| !!! | ATACTGTTAAGTTGAATTAA+GGG | + | Chr5:29337860-29337879 | None:intergenic | 20.0% |
| !!! | GATGAACTTTTTTTTTAAAC+GGG | - | Chr5:29337982-29338001 | MsG0580026027.01.T01:CDS | 20.0% |
| !!! | GTATTTTATGTGATTTACTA+TGG | - | Chr5:29337729-29337748 | MsG0580026027.01.T01:intron | 20.0% |
| !!! | TTTGTTTTTTTAACTCTCAT+GGG | - | Chr5:29337399-29337418 | MsG0580026027.01.T01:intron | 20.0% |
| !!! | TTTTGTTTTTTTAACTCTCA+TGG | - | Chr5:29337398-29337417 | MsG0580026027.01.T01:intron | 20.0% |
| ! | ATGCTATATCTCCTAATATA+AGG | - | Chr5:29337610-29337629 | MsG0580026027.01.T01:intron | 25.0% |
| ! | TGCTATATCTCCTAATATAA+GGG | - | Chr5:29337611-29337630 | MsG0580026027.01.T01:intron | 25.0% |
| !!! | TGTATTTTTTTGGCTTAAGA+TGG | - | Chr5:29337426-29337445 | MsG0580026027.01.T01:intron | 25.0% |
| ACATTCATACTGATGAAGAA+AGG | - | Chr5:29338140-29338159 | MsG0580026027.01.T01:CDS | 30.0% | |
| GAATTAAGGGATATAAAAGC+CGG | + | Chr5:29337847-29337866 | None:intergenic | 30.0% | |
| GTTATGACTAGACACAAAAT+TGG | - | Chr5:29338006-29338025 | MsG0580026027.01.T01:intron | 30.0% | |
| TTCTTCATCAGTATGAATGT+TGG | + | Chr5:29338140-29338159 | None:intergenic | 30.0% | |
| !! | ATTTGAAACGAGACTTTTTG+AGG | - | Chr5:29338044-29338063 | MsG0580026027.01.T01:intron | 30.0% |
| AAAGTTGTTGACAAGGTTGT+AGG | - | Chr5:29338164-29338183 | MsG0580026027.01.T01:CDS | 35.0% | |
| AAGTTGTTGACAAGGTTGTA+GGG | - | Chr5:29338165-29338184 | MsG0580026027.01.T01:CDS | 35.0% | |
| AATTTATCCAACATGGAGCA+TGG | - | Chr5:29337223-29337242 | MsG0580026027.01.T01:CDS | 35.0% | |
| AGATTTCATCAAGATTGACG+TGG | - | Chr5:29337534-29337553 | MsG0580026027.01.T01:intron | 35.0% | |
| ATTGGATCCATGTATTTGCA+AGG | + | Chr5:29337481-29337500 | None:intergenic | 35.0% | |
| GAAAGGAAAAGTTGTTGACA+AGG | - | Chr5:29338157-29338176 | MsG0580026027.01.T01:CDS | 35.0% | |
| GATTGACGTGGATGAATTAA+TGG | - | Chr5:29337546-29337565 | MsG0580026027.01.T01:intron | 35.0% | |
| TAATTGAATTTACGGCTGCA+TGG | - | Chr5:29337449-29337468 | MsG0580026027.01.T01:intron | 35.0% | |
| ! | TGGTCTTTTTCCATACAAAC+AGG | - | Chr5:29337749-29337768 | MsG0580026027.01.T01:intron | 35.0% |
| !!! | CATGGGATCGTGTATTTTTT+TGG | - | Chr5:29337416-29337435 | MsG0580026027.01.T01:intron | 35.0% |
| AGTTGTTGACAAGGTTGTAG+GGG | - | Chr5:29338166-29338185 | MsG0580026027.01.T01:CDS | 40.0% | |
| ATAAGCCTTCCATTTAGCAG+TGG | + | Chr5:29337296-29337315 | None:intergenic | 40.0% | |
| CCATACAAACAGGATGACTA+AGG | - | Chr5:29337759-29337778 | MsG0580026027.01.T01:intron | 40.0% | |
| CCTTAGTCATCCTGTTTGTA+TGG | + | Chr5:29337762-29337781 | None:intergenic | 40.0% | |
| CTCCAAAGAAACTAACAAGC+TGG | - | Chr5:29337324-29337343 | MsG0580026027.01.T01:CDS | 40.0% | |
| GCAGCAAAGTCTTGAATGAT+TGG | + | Chr5:29337499-29337518 | None:intergenic | 40.0% | |
| !! | CACCAGCTTGTTAGTTTCTT+TGG | + | Chr5:29337329-29337348 | None:intergenic | 40.0% |
| !! | CAGCTTGTTAGTTTCTTTGG+AGG | + | Chr5:29337326-29337345 | None:intergenic | 40.0% |
| CAAGGTTGTAGGGGCAAAAA+AGG | - | Chr5:29338175-29338194 | MsG0580026027.01.T01:CDS | 45.0% | |
| CCATTCCACTGCTAAATGGA+AGG | - | Chr5:29337288-29337307 | MsG0580026027.01.T01:CDS | 45.0% | |
| CCATTTAGCAGTGGAATGGA+AGG | + | Chr5:29337287-29337306 | None:intergenic | 45.0% | |
| CCTTCCATTCCACTGCTAAA+TGG | - | Chr5:29337284-29337303 | MsG0580026027.01.T01:CDS | 45.0% | |
| CCTTCCATTTAGCAGTGGAA+TGG | + | Chr5:29337291-29337310 | None:intergenic | 45.0% | |
| GGGAGGCAATTTATCCAACA+TGG | - | Chr5:29337216-29337235 | MsG0580026027.01.T01:CDS | 45.0% | |
| GTGTGGACCTTGCAAATACA+TGG | - | Chr5:29337471-29337490 | MsG0580026027.01.T01:intron | 45.0% | |
| TGGTGTGCTGCCCTTATATT+AGG | + | Chr5:29337624-29337643 | None:intergenic | 45.0% | |
| TGTATGACCATGCTCCATGT+TGG | + | Chr5:29337233-29337252 | None:intergenic | 45.0% | |
| GAATTTACGGCTGCATGGTG+TGG | - | Chr5:29337454-29337473 | MsG0580026027.01.T01:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 29337214 | 29338235 | 29337214 | ID=MsG0580026027.01;Name=MsG0580026027.01 |
| Chr5 | mRNA | 29337214 | 29338235 | 29337214 | ID=MsG0580026027.01.T01;Parent=MsG0580026027.01;Name=MsG0580026027.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|3|0|128 |
| Chr5 | exon | 29338104 | 29338235 | 29338104 | ID=MsG0580026027.01.T01:exon:33477;Parent=MsG0580026027.01.T01 |
| Chr5 | exon | 29337882 | 29338004 | 29337882 | ID=MsG0580026027.01.T01:exon:33476;Parent=MsG0580026027.01.T01 |
| Chr5 | exon | 29337214 | 29337345 | 29337214 | ID=MsG0580026027.01.T01:exon:33475;Parent=MsG0580026027.01.T01 |
| Chr5 | CDS | 29338104 | 29338235 | 29338104 | ID=MsG0580026027.01.T01:cds;Parent=MsG0580026027.01.T01 |
| Chr5 | CDS | 29337882 | 29338004 | 29337882 | ID=MsG0580026027.01.T01:cds;Parent=MsG0580026027.01.T01 |
| Chr5 | CDS | 29337214 | 29337345 | 29337214 | ID=MsG0580026027.01.T01:cds;Parent=MsG0580026027.01.T01 |
| Gene Sequence |
| Protein sequence |
