AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006649.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006649.01.T01 MTR_2g011820 87.380 523 11 2 1 507 1 484 0.0 916
MsG0280006649.01.T01 MTR_6g004070 31.361 169 93 6 106 255 268 432 2.08e-13 73.2
MsG0280006649.01.T01 MTR_6g004070 31.361 169 93 6 106 255 268 432 2.51e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006649.01.T01 AT4G21540 56.564 518 159 7 5 506 17 484 0.0 571
MsG0280006649.01.T01 AT4G21534 53.010 515 172 7 10 506 17 479 0.0 534
MsG0280006649.01.T01 AT4G21534 53.010 515 172 7 10 506 17 479 0.0 534
MsG0280006649.01.T01 AT4G21540 52.530 415 131 7 5 403 17 381 1.32e-140 410
MsG0280006649.01.T01 AT4G21540 57.680 319 85 5 188 506 6 274 8.53e-126 368
MsG0280006649.01.T01 AT5G23450 28.834 163 101 4 108 255 249 411 4.59e-11 65.9
MsG0280006649.01.T01 AT5G23450 28.834 163 101 4 108 255 249 411 4.59e-11 65.9
MsG0280006649.01.T01 AT5G23450 28.834 163 101 4 108 255 249 411 4.59e-11 65.9
MsG0280006649.01.T01 AT5G23450 28.834 163 101 4 108 255 249 411 4.78e-11 65.9

Find 147 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGGTGGGGTCCACTTTC+CGG 0.221113 2:+4484691 MsG0280006649.01.T01:five_prime_UTR
CATTTACTGAACCGGGTTTC+CGG 0.236823 2:+4484664 MsG0280006649.01.T01:five_prime_UTR
AGATTCAGATGGTGAGGTTT+TGG 0.263213 2:+4488793 MsG0280006649.01.T01:CDS
ATACTATAGATTATAGAATA+TGG 0.264627 2:-4484573 None:intergenic
AAATTTAACCGCCAACAATT+TGG 0.269751 2:-4489062 None:intergenic
GCAGTTCTCCGACGGTTATC+TGG 0.285599 2:+4488479 MsG0280006649.01.T01:intron
TATTAGTGGAGATGGAATTT+TGG 0.307587 2:+4485461 MsG0280006649.01.T01:CDS
CCACATCAAGCTGTCGCTTA+TGG 0.316805 2:-4486629 None:intergenic
TTGTATCATAAATGAACTTT+TGG 0.318804 2:+4487540 MsG0280006649.01.T01:CDS
ATGAATTGGAGAGTTATAAA+TGG 0.319462 2:+4487919 MsG0280006649.01.T01:CDS
AATGATGTCAGAGCTGAATA+AGG 0.325937 2:+4488545 MsG0280006649.01.T01:CDS
CCGGATTTCATTTACTGAAC+CGG 0.341892 2:+4484656 MsG0280006649.01.T01:five_prime_UTR
TGATTTCTTCGGATTACTTA+AGG 0.342387 2:+4487195 MsG0280006649.01.T01:CDS
CACCTGGGTTTGAGTCTTAC+GGG 0.346554 2:+4487776 MsG0280006649.01.T01:CDS
CCAGGCAAATCTACTATTAG+AGG 0.349615 2:+4487814 MsG0280006649.01.T01:CDS
GATGGAATTGTTTGTATTAG+TGG 0.356981 2:+4485447 MsG0280006649.01.T01:CDS
CAATAAATTCATGAAGCTTC+AGG 0.363216 2:-4484994 None:intergenic
AAATGTACGTTTGATTTCTT+CGG 0.368806 2:+4487184 MsG0280006649.01.T01:CDS
ATGGACCCTTTATTAGTGTC+TGG 0.370216 2:+4487938 MsG0280006649.01.T01:CDS
TTGCAGATAACAGTGGATAA+AGG 0.371104 2:+4488872 MsG0280006649.01.T01:CDS
TGTTATCTGCAATTTATCAT+AGG 0.373214 2:-4488861 None:intergenic
GTTACTCGGTCCGAAAATAA+AGG 0.379470 2:-4484725 None:intergenic
TAAACTTGGAAAATATGAAT+TGG 0.383486 2:+4487905 MsG0280006649.01.T01:CDS
GTGAACCCAGACACTAATAA+AGG 0.387070 2:-4487944 None:intergenic
CTGGGTTCACAATGTACCTT+GGG 0.390540 2:+4487957 MsG0280006649.01.T01:CDS
CCTCGTCGGAGGAAAATCTT+AGG 0.394221 2:+4484963 MsG0280006649.01.T01:CDS
TTGCAAACACTTTGTTATCA+AGG 0.400837 2:+4487874 MsG0280006649.01.T01:CDS
GCACCTGGGTTTGAGTCTTA+CGG 0.401683 2:+4487775 MsG0280006649.01.T01:CDS
ACCGGGTTTCCGGCTGAGAT+TGG 0.404929 2:+4484674 MsG0280006649.01.T01:five_prime_UTR
CGGAGGAAAATCTTAGGCTT+TGG 0.405855 2:+4484969 MsG0280006649.01.T01:CDS
CAAGGAACGAGCAACCTCTT+TGG 0.408410 2:-4485409 None:intergenic
GGTTTCCGGCTGAGATTGGT+GGG 0.408630 2:+4484678 MsG0280006649.01.T01:five_prime_UTR
GTGTGAGCAGAAGGCTTTGA+TGG 0.409544 2:+4488838 MsG0280006649.01.T01:CDS
AGGTCCTTGGTGCGTGTACC+AGG 0.410998 2:-4488752 None:intergenic
AGCCTTCTGCTCACACTTGT+AGG 0.411998 2:-4488831 None:intergenic
GCCGTTCTTGCCATCATTCG+AGG 0.424674 2:+4486499 MsG0280006649.01.T01:CDS
TGGGGTCCACTTTCCGGAGA+TGG 0.427437 2:+4484697 MsG0280006649.01.T01:exon
ACTTTGTAAGGTACTGGAAA+TGG 0.432146 2:+4486424 MsG0280006649.01.T01:intron
GCACATTTCTTCCCACCAAA+TGG 0.437130 2:-4485213 None:intergenic
GGGTTTCCGGCTGAGATTGG+TGG 0.438428 2:+4484677 MsG0280006649.01.T01:five_prime_UTR
CCTTTGTAACACCAAATTGT+TGG 0.444550 2:+4489051 MsG0280006649.01.T01:three_prime_UTR
CCTCTAATAGTAGATTTGCC+TGG 0.445558 2:-4487814 None:intergenic
TGCTGCACCACCGGTGAAGC+TGG 0.447019 2:+4484908 MsG0280006649.01.T01:CDS
CCGTGCCGTTGACGGTTACT+CGG 0.447055 2:-4484739 None:intergenic
CAATATATTTGATGCTGTAC+AGG 0.447490 2:-4489016 None:intergenic
TCAGTATATTGATGTTGGCA+TGG 0.447673 2:+4486682 MsG0280006649.01.T01:CDS
CGGATTTCATTTACTGAACC+GGG 0.449349 2:+4484657 MsG0280006649.01.T01:five_prime_UTR
TCTGCCGACTCTTCAATTTG+AGG 0.451311 2:+4487722 MsG0280006649.01.T01:CDS
TATCTCCGAGACGTGAAAAC+CGG 0.452293 2:+4484637 MsG0280006649.01.T01:five_prime_UTR
CAGTATATTGATGTTGGCAT+GGG 0.452709 2:+4486683 MsG0280006649.01.T01:CDS
CGGCGTTACCGTGCCGTTGA+CGG 0.456879 2:-4484747 None:intergenic
ACAAAACTGACCTTTGCATC+TGG 0.460288 2:-4488003 None:intergenic
TGGACCCTTTATTAGTGTCT+GGG 0.462795 2:+4487939 MsG0280006649.01.T01:CDS
CAAAGAGGTTGCTCGTTCCT+TGG 0.463356 2:+4485410 MsG0280006649.01.T01:CDS
TTAACATGTTCCCCTTCACT+TGG 0.470645 2:-4487850 None:intergenic
CCGGTTCAGTAAATGAAATC+CGG 0.473779 2:-4484656 None:intergenic
ATTGTTTGTATTAGTGGAGA+TGG 0.474601 2:+4485453 MsG0280006649.01.T01:CDS
TTACCCCTATGTAATACTCT+TGG 0.481543 2:+4488909 MsG0280006649.01.T01:exon
CTCTAATAGTAGATTTGCCT+GGG 0.487949 2:-4487813 None:intergenic
AATAAAGGACGATCCATCTC+CGG 0.494389 2:-4484710 None:intergenic
TGAACCCAGACACTAATAAA+GGG 0.495010 2:-4487943 None:intergenic
TCAAGGACCTGAAATAAACT+TGG 0.497607 2:+4487891 MsG0280006649.01.T01:CDS
TTCTCACCGACGGTAGGCTA+TGG 0.502494 2:+4484777 MsG0280006649.01.T01:CDS
ATTAACCAAGAGTATTACAT+AGG 0.504287 2:-4488914 None:intergenic
TTGACAACAAATGTAACTTC+GGG 0.505763 2:-4488524 None:intergenic
ATTGACAACAAATGTAACTT+CGG 0.507378 2:-4488525 None:intergenic
ACCAATCTCAGCCGGAAACC+CGG 0.507435 2:-4484675 None:intergenic
AGATTTGCCTGGGTAACTGC+TGG 0.509934 2:-4487803 None:intergenic
CATGAATTTATTGATTCTCT+CGG 0.510453 2:+4485004 MsG0280006649.01.T01:CDS
GTCTGAAAAGTATCGGTGGA+TGG 0.510582 2:+4486836 MsG0280006649.01.T01:CDS
TCCGTATGTCACGTACCTAA+AGG 0.512712 2:+4488584 MsG0280006649.01.T01:CDS
ACCTCGAATGATGGCAAGAA+CGG 0.516893 2:-4486500 None:intergenic
TCTGGGTTCACAATGTACCT+TGG 0.516933 2:+4487956 MsG0280006649.01.T01:CDS
CAAATTCAACTCACTATACA+AGG 0.517431 2:+4485282 MsG0280006649.01.T01:CDS
AATGATGGCAAGAACGGCAT+TGG 0.517676 2:-4486494 None:intergenic
AAATCTCTGCTTGATTCAGT+TGG 0.518177 2:+4486454 MsG0280006649.01.T01:CDS
AACGAGTCTACCAGCTTCAC+CGG 0.520838 2:-4484918 None:intergenic
TTAACCAAGAGTATTACATA+GGG 0.530522 2:-4488913 None:intergenic
TGGACTGAAACCTCGAATGA+TGG 0.530669 2:-4486509 None:intergenic
GACGATCCATCTCCGGAAAG+TGG 0.536077 2:-4484703 None:intergenic
TTGTAACACCAAATTGTTGG+CGG 0.541853 2:+4489054 MsG0280006649.01.T01:three_prime_UTR
ACGCACCAAGGACCTAGAAA+AGG 0.542258 2:+4488760 MsG0280006649.01.T01:CDS
ATGATGTCAGAGCTGAATAA+GGG 0.543037 2:+4488546 MsG0280006649.01.T01:CDS
CATCAAACTCAAGACTCTTG+TGG 0.543663 2:+4484871 MsG0280006649.01.T01:CDS
CGTGACGGTTGCTGCACCAC+CGG 0.543925 2:+4484899 MsG0280006649.01.T01:CDS
TAAGACTCAAACCCAGGTGC+AGG 0.544026 2:-4487772 None:intergenic
ACCTTTAGGTACGTGACATA+CGG 0.546444 2:-4488585 None:intergenic
TCTGAAAAGTATCGGTGGAT+GGG 0.552297 2:+4486837 MsG0280006649.01.T01:CDS
AACCTACAAGTGTGAGCAGA+AGG 0.552703 2:+4488829 MsG0280006649.01.T01:CDS
AAAGCTTTCAGCTTGGAACC+TGG 0.553371 2:+4488734 MsG0280006649.01.T01:CDS
AACAGTAGCGATCCAAGTGA+AGG 0.555499 2:+4487838 MsG0280006649.01.T01:CDS
TCCCCGTAAGACTCAAACCC+AGG 0.556710 2:-4487778 None:intergenic
TGGTAAATGCAGTTCTCCGA+CGG 0.556721 2:+4488471 MsG0280006649.01.T01:intron
AAAGGTGAAAGCTTTCAGCT+TGG 0.560686 2:+4488727 MsG0280006649.01.T01:intron
CAGGCAAATCTACTATTAGA+GGG 0.572549 2:+4487815 MsG0280006649.01.T01:CDS
TGGACCCCACCAATCTCAGC+CGG 0.575018 2:-4484683 None:intergenic
TTCAATTTGAGGCTATACAA+TGG 0.583619 2:+4487733 MsG0280006649.01.T01:CDS
ACATAGAGTCTGAAAAGTAT+CGG 0.585230 2:+4486829 MsG0280006649.01.T01:CDS
ATCGTGCTTTGAAATATCCA+AGG 0.586577 2:-4485427 None:intergenic
ACATCAGCTACATGCCAAAG+AGG 0.586600 2:+4485395 MsG0280006649.01.T01:CDS
CCAAGGACCTAGAAAAGGAA+GGG 0.587821 2:+4488765 MsG0280006649.01.T01:CDS
TCGGACCGAGTAACCGTCAA+CGG 0.591061 2:+4484734 MsG0280006649.01.T01:CDS
ACAGTAGCGATCCAAGTGAA+GGG 0.596263 2:+4487839 MsG0280006649.01.T01:CDS
GTGTACAATATTGCGTGGTG+TGG 0.598718 2:-4488955 None:intergenic
ACCAAGGACCTAGAAAAGGA+AGG 0.599301 2:+4488764 MsG0280006649.01.T01:CDS
GATCATAGATTCAGATGGTG+AGG 0.602096 2:+4488787 MsG0280006649.01.T01:CDS
TCACCGACGGTAGGCTATGG+TGG 0.602299 2:+4484780 MsG0280006649.01.T01:CDS
TCTGGTTTCCCCTTGTGTGA+TGG 0.603088 2:-4486655 None:intergenic
CCAACAATTTGGTGTTACAA+AGG 0.603222 2:-4489051 None:intergenic
CGACGGTAGGCTATGGTGGT+CGG 0.603972 2:+4484784 MsG0280006649.01.T01:CDS
ATATTTGATGCTGTACAGGA+AGG 0.606328 2:-4489012 None:intergenic
TAGCTCTTCTCACCGACGGT+AGG 0.609654 2:+4484771 MsG0280006649.01.T01:CDS
GGGGAGTCCAGCAGTTACCC+AGG 0.614345 2:+4487796 MsG0280006649.01.T01:CDS
GTAAGGTACTGGAAATGGCA+TGG 0.615002 2:+4486429 MsG0280006649.01.T01:intron
AATGGCAGCACCAGATGCAA+AGG 0.617345 2:+4487993 MsG0280006649.01.T01:CDS
GGTAGGCTATGGTGGTCGGA+AGG 0.617653 2:+4484788 MsG0280006649.01.T01:CDS
ACGGCATTGGCTATTGCGCA+AGG 0.619785 2:-4486481 None:intergenic
GTTTCCGGCTGAGATTGGTG+GGG 0.623778 2:+4484679 MsG0280006649.01.T01:five_prime_UTR
ATAGCCTCAAATTGAAGAGT+CGG 0.627949 2:-4487726 None:intergenic
TTGGATATTTCAAAGCACGA+TGG 0.629196 2:+4485429 MsG0280006649.01.T01:CDS
GAAGGGATCATAGATTCAGA+TGG 0.634115 2:+4488782 MsG0280006649.01.T01:CDS
GTTCTCGGATTCGTCTCTAG+TGG 0.634222 2:+4484842 MsG0280006649.01.T01:CDS
CCATAAGCGACAGCTTGATG+TGG 0.637287 2:+4486629 MsG0280006649.01.T01:CDS
AGTATATTGATGTTGGCATG+GGG 0.637619 2:+4486684 MsG0280006649.01.T01:CDS
ACTCTTGTGGAAGCTCGTGA+CGG 0.644300 2:+4484884 MsG0280006649.01.T01:CDS
CCGAGTAACCGTCAACGGCA+CGG 0.645401 2:+4484739 MsG0280006649.01.T01:CDS
CAGTAGCGATCCAAGTGAAG+GGG 0.649527 2:+4487840 MsG0280006649.01.T01:CDS
GAAAGAACTAAACATTAACA+TGG 0.649943 2:-4484524 None:intergenic
GATGTGGCTACCATCACACA+AGG 0.653053 2:+4486645 MsG0280006649.01.T01:CDS
ACCTGGGTTTGAGTCTTACG+GGG 0.653794 2:+4487777 MsG0280006649.01.T01:CDS
TAGAGTCTGAAAAGTATCGG+TGG 0.655131 2:+4486832 MsG0280006649.01.T01:CDS
ATTGTGTCTTCAGCACCCCA+AGG 0.656208 2:-4487973 None:intergenic
CCGTCGGTGAGAAGAGCTAA+CGG 0.657017 2:-4484767 None:intergenic
GATCAAGTCCAGATAACCGT+CGG 0.657829 2:-4488487 None:intergenic
CCGTTAGCTCTTCTCACCGA+CGG 0.661100 2:+4484767 MsG0280006649.01.T01:CDS
GGAACCTGGTACACGCACCA+AGG 0.661636 2:+4488748 MsG0280006649.01.T01:CDS
GGTGGTCGGAAGGAATTCAA+CGG 0.661973 2:+4484798 MsG0280006649.01.T01:CDS
TGATAAATTGCAGATAACAG+TGG 0.665901 2:+4488865 MsG0280006649.01.T01:CDS
TGTGGCTACCATCACACAAG+GGG 0.666829 2:+4486647 MsG0280006649.01.T01:CDS
ATGTCAGAGCTGAATAAGGG+AGG 0.679486 2:+4488549 MsG0280006649.01.T01:CDS
CGACCACCATAGCCTACCGT+CGG 0.689684 2:-4484783 None:intergenic
TTGGGGTGCTGAAGACACAA+TGG 0.697160 2:+4487975 MsG0280006649.01.T01:CDS
ATGTGGCTACCATCACACAA+GGG 0.702286 2:+4486646 MsG0280006649.01.T01:CDS
GAGTCTACCAGCTTCACCGG+TGG 0.702423 2:-4484915 None:intergenic
TAACCAAGAGTATTACATAG+GGG 0.710056 2:-4488912 None:intergenic
TGTGTGTGTACAATATTGCG+TGG 0.750543 2:-4488960 None:intergenic
TGGGTTCACAATGTACCTTG+GGG 0.763075 2:+4487958 MsG0280006649.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAATTTGTTTAATTTTAA+TGG + Chr2:4488198-4488217 MsG0280006649.01.T01:intron 10.0%
!!! TTATAGTATTTTTTAATTTC+TGG - Chr2:4484484-4484503 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGACA+AGG + Chr2:4487233-4487252 MsG0280006649.01.T01:intron 10.0%
!! ATACTATAGATTATAGAATA+TGG - Chr2:4484576-4484595 None:intergenic 15.0%
!! ATTAAAAATATTTACACCAT+TGG - Chr2:4488398-4488417 None:intergenic 15.0%
!! CAGAAATTTATTGTTTATTA+TGG - Chr2:4488304-4488323 None:intergenic 15.0%
!! TCAAATTATACTTTATGAAT+TGG + Chr2:4488231-4488250 MsG0280006649.01.T01:intron 15.0%
!! TTAGATTAGAAAGAAAAAAA+AGG - Chr2:4485876-4485895 None:intergenic 15.0%
!!! CAAATATGTTATTTTATTTC+AGG + Chr2:4486789-4486808 MsG0280006649.01.T01:intron 15.0%
!! AAGATGTGAACTTTATAAAA+TGG - Chr2:4486894-4486913 None:intergenic 20.0%
!! AATGTATATGAAATATTGAC+AGG + Chr2:4486606-4486625 MsG0280006649.01.T01:intron 20.0%
!! TAAACTTGGAAAATATGAAT+TGG + Chr2:4487905-4487924 MsG0280006649.01.T01:CDS 20.0%
!! TTCACAACACAATATATTAA+TGG - Chr2:4485135-4485154 None:intergenic 20.0%
!!! AAAGTATTACACAATATATC+AGG - Chr2:4488618-4488637 None:intergenic 20.0%
!!! ACTATGAATTTTGATGATTT+AGG + Chr2:4485159-4485178 MsG0280006649.01.T01:intron 20.0%
!!! ATATTTTCCAAGTTTATTTC+AGG - Chr2:4487901-4487920 None:intergenic 20.0%
!!! ATTTTTCAGTATATTGATGT+TGG + Chr2:4486677-4486696 MsG0280006649.01.T01:CDS 20.0%
!!! CTATTTTACTATTAACTCTT+CGG - Chr2:4486152-4486171 None:intergenic 20.0%
!!! GTAAAATAGGAATTTTATTC+AGG + Chr2:4486163-4486182 MsG0280006649.01.T01:intron 20.0%
!!! TCTTTAGTTTGTGTTTTATT+TGG + Chr2:4488072-4488091 MsG0280006649.01.T01:intron 20.0%
!!! TTGTATCATAAATGAACTTT+TGG + Chr2:4487540-4487559 MsG0280006649.01.T01:CDS 20.0%
! AACAACTAATCACTAACATT+TGG - Chr2:4486988-4487007 None:intergenic 25.0%
! AATAGAAATTGTAACATCCA+TGG + Chr2:4485752-4485771 MsG0280006649.01.T01:intron 25.0%
! AATTAGAAAGAAAGAGGTAA+AGG - Chr2:4487305-4487324 None:intergenic 25.0%
! ACAAAAACAAGCAATTTCTT+TGG - Chr2:4485189-4485208 None:intergenic 25.0%
! ACATGTTTGAATGACATAAA+TGG - Chr2:4486532-4486551 None:intergenic 25.0%
! ATAGAAATTGTAACATCCAT+GGG + Chr2:4485753-4485772 MsG0280006649.01.T01:intron 25.0%
! ATGAATTGGAGAGTTATAAA+TGG + Chr2:4487919-4487938 MsG0280006649.01.T01:CDS 25.0%
! ATTCTAACAAAAATGATCTG+CGG - Chr2:4486339-4486358 None:intergenic 25.0%
! ATTGACAACAAATGTAACTT+CGG - Chr2:4488528-4488547 None:intergenic 25.0%
! ATTTGCTTGATTTACTTACA+AGG + Chr2:4486295-4486314 MsG0280006649.01.T01:intron 25.0%
! CATCAATATACTGAAAAATC+TGG - Chr2:4486676-4486695 None:intergenic 25.0%
! CATTGAAATTAGAAAGAAAG+AGG - Chr2:4487311-4487330 None:intergenic 25.0%
! CGAAGAGTTAATAGTAAAAT+AGG + Chr2:4486150-4486169 MsG0280006649.01.T01:intron 25.0%
! CTTAAAATCACAAACAAACT+TGG - Chr2:4487134-4487153 None:intergenic 25.0%
! CTTTGCAATATAAACATGAA+AGG - Chr2:4485541-4485560 None:intergenic 25.0%
! GAAAGAACTAAACATTAACA+TGG - Chr2:4484527-4484546 None:intergenic 25.0%
! GATAAAACAAGATTCCATTT+AGG - Chr2:4486948-4486967 None:intergenic 25.0%
! GATATGTATACAGAAAAGTA+AGG - Chr2:4487387-4487406 None:intergenic 25.0%
! GTTATAAAAGAGATATGAGT+TGG + Chr2:4487656-4487675 MsG0280006649.01.T01:intron 25.0%
! TAATTACTCTTACCATAGAT+TGG + Chr2:4486707-4486726 MsG0280006649.01.T01:intron 25.0%
! TGGAATCAATTCATACAAAT+TGG - Chr2:4488144-4488163 None:intergenic 25.0%
! TGTATCTTGCAATAAATCAA+AGG + Chr2:4488709-4488728 MsG0280006649.01.T01:intron 25.0%
! TGTTATCTGCAATTTATCAT+AGG - Chr2:4488864-4488883 None:intergenic 25.0%
! TTAGAAGATAATTGCAACAA+AGG - Chr2:4487085-4487104 None:intergenic 25.0%
! TTCTCATGTAAGAATCATAA+TGG + Chr2:4485678-4485697 MsG0280006649.01.T01:intron 25.0%
!! AAATGTACGTTTGATTTCTT+CGG + Chr2:4487184-4487203 MsG0280006649.01.T01:CDS 25.0%
!! CTCTTGGTTAATTATTTTCT+CGG + Chr2:4488925-4488944 MsG0280006649.01.T01:three_prime_UTR 25.0%
!! GAATCATAATGGTTTTTGTT+TGG + Chr2:4485689-4485708 MsG0280006649.01.T01:intron 25.0%
!! GTAAACTTTTTACTGAGAAT+GGG + Chr2:4486056-4486075 MsG0280006649.01.T01:intron 25.0%
!! TATCATAAATGAACTTTTGG+TGG + Chr2:4487543-4487562 MsG0280006649.01.T01:CDS 25.0%
!! TCTTGGTTAATTATTTTCTC+GGG + Chr2:4488926-4488945 MsG0280006649.01.T01:three_prime_UTR 25.0%
!! TGTAAACTTTTTACTGAGAA+TGG + Chr2:4486055-4486074 MsG0280006649.01.T01:intron 25.0%
!! TTTTATGTTTTCTTGAGTAG+AGG + Chr2:4486008-4486027 MsG0280006649.01.T01:intron 25.0%
!! TTTTCGTAGATAAATACCAA+TGG + Chr2:4488379-4488398 MsG0280006649.01.T01:intron 25.0%
!!! ACAAACTAAAGAGTGTTAAT+GGG - Chr2:4488064-4488083 None:intergenic 25.0%
!!! ACATTTTAGTAGGTTGTAAA+CGG + Chr2:4485906-4485925 MsG0280006649.01.T01:intron 25.0%
!!! ATTAACCAAGAGTATTACAT+AGG - Chr2:4488917-4488936 None:intergenic 25.0%
!!! CATGAATTTATTGATTCTCT+CGG + Chr2:4485004-4485023 MsG0280006649.01.T01:CDS 25.0%
!!! TAGTTTGTGTTTATCTTTTG+AGG + Chr2:4485561-4485580 MsG0280006649.01.T01:intron 25.0%
!!! TGATTTTAAGTTGAATGCTT+TGG + Chr2:4487144-4487163 MsG0280006649.01.T01:intron 25.0%
!!! TTAACCAAGAGTATTACATA+GGG - Chr2:4488916-4488935 None:intergenic 25.0%
AAATTTAACCGCCAACAATT+TGG - Chr2:4489065-4489084 None:intergenic 30.0%
AGCAATCCATTAAGAGATTT+CGG - Chr2:4486247-4486266 None:intergenic 30.0%
ATGGGAAGTAAAATTGCAAT+GGG + Chr2:4485771-4485790 MsG0280006649.01.T01:intron 30.0%
ATTCAAACATGTCATATCCT+AGG + Chr2:4486540-4486559 MsG0280006649.01.T01:intron 30.0%
ATTGTTTGTATTAGTGGAGA+TGG + Chr2:4485453-4485472 MsG0280006649.01.T01:CDS 30.0%
ATTTGAGCATCATCAAAAAG+TGG - Chr2:4485267-4485286 None:intergenic 30.0%
CAAAATGTGATGCTATTCAT+TGG - Chr2:4486739-4486758 None:intergenic 30.0%
CAAATTCAACTCACTATACA+AGG + Chr2:4485282-4485301 MsG0280006649.01.T01:CDS 30.0%
CAATAAATTCATGAAGCTTC+AGG - Chr2:4484997-4485016 None:intergenic 30.0%
CAATATATTTGATGCTGTAC+AGG - Chr2:4489019-4489038 None:intergenic 30.0%
CACAAACTCAATCAACAAAA+AGG - Chr2:4485360-4485379 None:intergenic 30.0%
GAGAAAAGAGAAATACATCA+CGG + Chr2:4487408-4487427 MsG0280006649.01.T01:intron 30.0%
GAGGTAAAGGAATATATCAT+CGG - Chr2:4487292-4487311 None:intergenic 30.0%
GATGGAATTGTTTGTATTAG+TGG + Chr2:4485447-4485466 MsG0280006649.01.T01:CDS 30.0%
TGATAAATTGCAGATAACAG+TGG + Chr2:4488865-4488884 MsG0280006649.01.T01:CDS 30.0%
TGATTTCTTCGGATTACTTA+AGG + Chr2:4487195-4487214 MsG0280006649.01.T01:CDS 30.0%
TTAGTTGTTAGAATTGTTCG+CGG + Chr2:4486999-4487018 MsG0280006649.01.T01:intron 30.0%
TTATTAGGTGTACAAAAACC+TGG - Chr2:4488344-4488363 None:intergenic 30.0%
TTGACAACAAATGTAACTTC+GGG - Chr2:4488527-4488546 None:intergenic 30.0%
! AATATATCATCGGACTAGAA+TGG - Chr2:4487282-4487301 None:intergenic 30.0%
! ACATAGAGTCTGAAAAGTAT+CGG + Chr2:4486829-4486848 MsG0280006649.01.T01:CDS 30.0%
! ATAGCATCACATTTTGTTGA+TGG + Chr2:4486743-4486762 MsG0280006649.01.T01:intron 30.0%
! GAAGTATCTCTCAAAATCAA+AGG - Chr2:4487448-4487467 None:intergenic 30.0%
! GAGATACTTCTTAGTTCTTA+CGG + Chr2:4487458-4487477 MsG0280006649.01.T01:intron 30.0%
! GCGTTTAGCTGAATTTTATT+AGG - Chr2:4488359-4488378 None:intergenic 30.0%
! GTTAAATCTCTCATTTTGTG+TGG + Chr2:4487480-4487499 MsG0280006649.01.T01:intron 30.0%
! TATTAGTGGAGATGGAATTT+TGG + Chr2:4485461-4485480 MsG0280006649.01.T01:CDS 30.0%
! TGAATGCTTTGGATTACTTA+GGG + Chr2:4487155-4487174 MsG0280006649.01.T01:intron 30.0%
! TTCAATTTGAGGCTATACAA+TGG + Chr2:4487733-4487752 MsG0280006649.01.T01:CDS 30.0%
! TTGAATGCTTTGGATTACTT+AGG + Chr2:4487154-4487173 MsG0280006649.01.T01:intron 30.0%
! TTGCAAACACTTTGTTATCA+AGG + Chr2:4487874-4487893 MsG0280006649.01.T01:CDS 30.0%
! TTTACAGTAATGAAGTACCT+AGG - Chr2:4486560-4486579 None:intergenic 30.0%
! TTTGTGTGGTTCTACTTTAA+AGG + Chr2:4487494-4487513 MsG0280006649.01.T01:intron 30.0%
! TTTTTGTGAATCCATTTGGT+GGG + Chr2:4485202-4485221 MsG0280006649.01.T01:CDS 30.0%
!! ATGGTTTTTGTTTGGAAATG+AGG + Chr2:4485697-4485716 MsG0280006649.01.T01:intron 30.0%
!! CACAAACTAAAGAGTGTTAA+TGG - Chr2:4488065-4488084 None:intergenic 30.0%
!! CATTTTAGTAGGTTGTAAAC+GGG + Chr2:4485907-4485926 MsG0280006649.01.T01:intron 30.0%
!! CTGTGTATTGATTGTTTATC+AGG + Chr2:4486094-4486113 MsG0280006649.01.T01:intron 30.0%
!! TAACCAAGAGTATTACATAG+GGG - Chr2:4488915-4488934 None:intergenic 30.0%
!! TGGTTTTTGTTTGGAAATGA+GGG + Chr2:4485698-4485717 MsG0280006649.01.T01:intron 30.0%
!!! CTTGTTTTTGTGAATCCATT+TGG + Chr2:4485198-4485217 MsG0280006649.01.T01:CDS 30.0%
AAAAAATGTGTCACAAGCGA+AGG - Chr2:4487609-4487628 None:intergenic 35.0%
AAATCTCTGCTTGATTCAGT+TGG + Chr2:4486454-4486473 MsG0280006649.01.T01:CDS 35.0%
AAGCTCTTCCATACTTTGTA+AGG + Chr2:4486412-4486431 MsG0280006649.01.T01:intron 35.0%
AATGATGTCAGAGCTGAATA+AGG + Chr2:4488545-4488564 MsG0280006649.01.T01:CDS 35.0%
ACATAAGGATTGGAGAGATA+AGG - Chr2:4487043-4487062 None:intergenic 35.0%
AGTATATTGATGTTGGCATG+GGG + Chr2:4486684-4486703 MsG0280006649.01.T01:CDS 35.0%
ATAGCCTCAAATTGAAGAGT+CGG - Chr2:4487729-4487748 None:intergenic 35.0%
ATATTTGATGCTGTACAGGA+AGG - Chr2:4489015-4489034 None:intergenic 35.0%
ATCTGTAGATAACGAGTGTA+TGG + Chr2:4486364-4486383 MsG0280006649.01.T01:intron 35.0%
ATCTTCTAACACTTCAGTTC+TGG + Chr2:4487096-4487115 MsG0280006649.01.T01:intron 35.0%
ATGATGTCAGAGCTGAATAA+GGG + Chr2:4488546-4488565 MsG0280006649.01.T01:CDS 35.0%
CAGGCAAATCTACTATTAGA+GGG + Chr2:4487815-4487834 MsG0280006649.01.T01:CDS 35.0%
CAGTATATTGATGTTGGCAT+GGG + Chr2:4486683-4486702 MsG0280006649.01.T01:CDS 35.0%
CAGTTACCGAAATCTCTTAA+TGG + Chr2:4486238-4486257 MsG0280006649.01.T01:intron 35.0%
CATGGGAAGTAAAATTGCAA+TGG + Chr2:4485770-4485789 MsG0280006649.01.T01:intron 35.0%
CCTTTGTAACACCAAATTGT+TGG + Chr2:4489051-4489070 MsG0280006649.01.T01:three_prime_UTR 35.0%
CTCTAATAGTAGATTTGCCT+GGG - Chr2:4487816-4487835 None:intergenic 35.0%
GAAACAAGAAATAAACCTGC+AGG - Chr2:4485987-4486006 None:intergenic 35.0%
TAGTTGTTAGAATTGTTCGC+GGG + Chr2:4487000-4487019 MsG0280006649.01.T01:intron 35.0%
TATCAGGAAATCACACCTTT+AGG - Chr2:4488602-4488621 None:intergenic 35.0%
TATGGAAGAGCTTATTAGCT+TGG - Chr2:4486405-4486424 None:intergenic 35.0%
TCAAGGACCTGAAATAAACT+TGG + Chr2:4487891-4487910 MsG0280006649.01.T01:CDS 35.0%
TCAGTATATTGATGTTGGCA+TGG + Chr2:4486682-4486701 MsG0280006649.01.T01:CDS 35.0%
TCCAAATAACCTAGCACTAT+TGG + Chr2:4485590-4485609 MsG0280006649.01.T01:intron 35.0%
TCCAATAGTGCTAGGTTATT+TGG - Chr2:4485594-4485613 None:intergenic 35.0%
TCTCAATTCTTGTATCAGCA+TGG - Chr2:4486214-4486233 None:intergenic 35.0%
TCTGTAGATAACGAGTGTAT+GGG + Chr2:4486365-4486384 MsG0280006649.01.T01:intron 35.0%
TCTTCTAACACTTCAGTTCT+GGG + Chr2:4487097-4487116 MsG0280006649.01.T01:intron 35.0%
TGAACCCAGACACTAATAAA+GGG - Chr2:4487946-4487965 None:intergenic 35.0%
TGGGAAGTAAAATTGCAATG+GGG + Chr2:4485772-4485791 MsG0280006649.01.T01:intron 35.0%
TTACCCCTATGTAATACTCT+TGG + Chr2:4488909-4488928 MsG0280006649.01.T01:exon 35.0%
TTCATCGCGATTTGTACATT+TGG - Chr2:4488164-4488183 None:intergenic 35.0%
TTCCAGTACCTTACAAAGTA+TGG - Chr2:4486423-4486442 None:intergenic 35.0%
TTCCATACTTTGTAAGGTAC+TGG + Chr2:4486418-4486437 MsG0280006649.01.T01:intron 35.0%
TTGCAGATAACAGTGGATAA+AGG + Chr2:4488872-4488891 MsG0280006649.01.T01:CDS 35.0%
TTGGATATTTCAAAGCACGA+TGG + Chr2:4485429-4485448 MsG0280006649.01.T01:CDS 35.0%
TTGTAACACCAAATTGTTGG+CGG + Chr2:4489054-4489073 MsG0280006649.01.T01:three_prime_UTR 35.0%
! AACTTTTTACTGAGAATGGG+TGG + Chr2:4486059-4486078 MsG0280006649.01.T01:intron 35.0%
! ACTTTTTACTGAGAATGGGT+GGG + Chr2:4486060-4486079 MsG0280006649.01.T01:intron 35.0%
! ATAGAGTGGTTTGGAACATA+AGG - Chr2:4487058-4487077 None:intergenic 35.0%
! ATGGATTGCTGGTCTATTAA+CGG + Chr2:4486257-4486276 MsG0280006649.01.T01:intron 35.0%
! CATTGCAATTTTACTTCCCA+TGG - Chr2:4485772-4485791 None:intergenic 35.0%
! CTTCCATAAGAAAGAAGTGT+CGG - Chr2:4485088-4485107 None:intergenic 35.0%
! GGTTTTCACAATCACAATGA+TGG - Chr2:4484555-4484574 None:intergenic 35.0%
! GTTTTTCTCTTCTCCCTAAT+GGG + Chr2:4488418-4488437 MsG0280006649.01.T01:intron 35.0%
! GTTTTTGTGAATCCATTTGG+TGG + Chr2:4485201-4485220 MsG0280006649.01.T01:CDS 35.0%
! TGTTTTTCTCTTCTCCCTAA+TGG + Chr2:4488417-4488436 MsG0280006649.01.T01:intron 35.0%
! TTTTTCTCTTCTCCCTAATG+GGG + Chr2:4488419-4488438 MsG0280006649.01.T01:intron 35.0%
!! ACTTTGTAAGGTACTGGAAA+TGG + Chr2:4486424-4486443 MsG0280006649.01.T01:intron 35.0%
!! ATCGTGCTTTGAAATATCCA+AGG - Chr2:4485430-4485449 None:intergenic 35.0%
!! ATTGAGCTTTGAAAGAGTCT+TGG + Chr2:4488650-4488669 MsG0280006649.01.T01:intron 35.0%
!! CAAGCATCACACATTTTAGT+AGG + Chr2:4485896-4485915 MsG0280006649.01.T01:intron 35.0%
!! CCAACAATTTGGTGTTACAA+AGG - Chr2:4489054-4489073 None:intergenic 35.0%
!! GAAATCTCTTAATGGATTGC+TGG + Chr2:4486246-4486265 MsG0280006649.01.T01:intron 35.0%
!!! GATGGATCGTCCTTTATTTT+CGG + Chr2:4484715-4484734 MsG0280006649.01.T01:exon 35.0%
AAAGGAGTGATAGAGTGGTT+TGG - Chr2:4487067-4487086 None:intergenic 40.0%
AAAGGTGAAAGCTTTCAGCT+TGG + Chr2:4488727-4488746 MsG0280006649.01.T01:intron 40.0%
AAGCATGATCCAATAGTGCT+AGG - Chr2:4485602-4485621 None:intergenic 40.0%
AATAAAGGACGATCCATCTC+CGG - Chr2:4484713-4484732 None:intergenic 40.0%
ACAAAACTGACCTTTGCATC+TGG - Chr2:4488006-4488025 None:intergenic 40.0%
ACAAATTGGTCCTCCTAATG+AGG - Chr2:4488130-4488149 None:intergenic 40.0%
ACCTTTAGGTACGTGACATA+CGG - Chr2:4488588-4488607 None:intergenic 40.0%
ATGGACCCTTTATTAGTGTC+TGG + Chr2:4487938-4487957 MsG0280006649.01.T01:CDS 40.0%
ATTAAGCAGATAGAAGCTGC+AGG - Chr2:4487350-4487369 None:intergenic 40.0%
CATCAAACTCAAGACTCTTG+TGG + Chr2:4484871-4484890 MsG0280006649.01.T01:CDS 40.0%
CCAGGCAAATCTACTATTAG+AGG + Chr2:4487814-4487833 MsG0280006649.01.T01:CDS 40.0%
CCGGATTTCATTTACTGAAC+CGG + Chr2:4484656-4484675 MsG0280006649.01.T01:five_prime_UTR 40.0%
CCGGTTCAGTAAATGAAATC+CGG - Chr2:4484659-4484678 None:intergenic 40.0%
CCTCTAATAGTAGATTTGCC+TGG - Chr2:4487817-4487836 None:intergenic 40.0%
CGGATTTCATTTACTGAACC+GGG + Chr2:4484657-4484676 MsG0280006649.01.T01:five_prime_UTR 40.0%
CTGAATATGAGCGTCCTAAA+TGG + Chr2:4486931-4486950 MsG0280006649.01.T01:intron 40.0%
GAAGGGATCATAGATTCAGA+TGG + Chr2:4488782-4488801 MsG0280006649.01.T01:CDS 40.0%
GAGAAATACATCACGGCTTT+AGG + Chr2:4487415-4487434 MsG0280006649.01.T01:intron 40.0%
GATCATAGATTCAGATGGTG+AGG + Chr2:4488787-4488806 MsG0280006649.01.T01:CDS 40.0%
GCTTCTTCAAAGAGAGGATT+GGG + Chr2:4485929-4485948 MsG0280006649.01.T01:intron 40.0%
GGGAAGTAAAATTGCAATGG+GGG + Chr2:4485773-4485792 MsG0280006649.01.T01:intron 40.0%
GTGAACCCAGACACTAATAA+AGG - Chr2:4487947-4487966 None:intergenic 40.0%
GTTACTCGGTCCGAAAATAA+AGG - Chr2:4484728-4484747 None:intergenic 40.0%
TCCGTTGAAAAAGAGGTTCT+CGG + Chr2:4484827-4484846 MsG0280006649.01.T01:CDS 40.0%
TCTTGTATCAGCATGGTACT+GGG - Chr2:4486207-4486226 None:intergenic 40.0%
TGGACCCTTTATTAGTGTCT+GGG + Chr2:4487939-4487958 MsG0280006649.01.T01:CDS 40.0%
TGTGTGTGTACAATATTGCG+TGG - Chr2:4488963-4488982 None:intergenic 40.0%
TTAACATGTTCCCCTTCACT+TGG - Chr2:4487853-4487872 None:intergenic 40.0%
TTCTTGTATCAGCATGGTAC+TGG - Chr2:4486208-4486227 None:intergenic 40.0%
! AGATTCAGATGGTGAGGTTT+TGG + Chr2:4488793-4488812 MsG0280006649.01.T01:CDS 40.0%
! ATGGTACTGGGATAAGGATT+AGG - Chr2:4486195-4486214 None:intergenic 40.0%
! CTATGATCCCTTCCTTTTCT+AGG - Chr2:4488775-4488794 None:intergenic 40.0%
! CTTTGAAAGAGTCTTGGCAT+TGG + Chr2:4488656-4488675 MsG0280006649.01.T01:intron 40.0%
! GTGGTTTGGAACATAAGGAT+TGG - Chr2:4487053-4487072 None:intergenic 40.0%
! TGGTACTGGGATAAGGATTA+GGG - Chr2:4486194-4486213 None:intergenic 40.0%
!! GATCAGTTTTAGCCCCATTA+GGG - Chr2:4488434-4488453 None:intergenic 40.0%
!! GTACTCTTTTAACTGCTACC+AGG + Chr2:4488323-4488342 MsG0280006649.01.T01:intron 40.0%
!! TAGAGTCTGAAAAGTATCGG+TGG + Chr2:4486832-4486851 MsG0280006649.01.T01:CDS 40.0%
!! TCTGAAAAGTATCGGTGGAT+GGG + Chr2:4486837-4486856 MsG0280006649.01.T01:CDS 40.0%
!! TGATCAGTTTTAGCCCCATT+AGG - Chr2:4488435-4488454 None:intergenic 40.0%
!!! TCCGAGAACCTCTTTTTCAA+CGG - Chr2:4484831-4484850 None:intergenic 40.0%
!!! TGGAGATGGAATTTTGGTTG+AGG + Chr2:4485467-4485486 MsG0280006649.01.T01:CDS 40.0%
AAAGCTTTCAGCTTGGAACC+TGG + Chr2:4488734-4488753 MsG0280006649.01.T01:CDS 45.0%
AACAGTAGCGATCCAAGTGA+AGG + Chr2:4487838-4487857 MsG0280006649.01.T01:CDS 45.0%
AACCTACAAGTGTGAGCAGA+AGG + Chr2:4488829-4488848 MsG0280006649.01.T01:CDS 45.0%
AACCTGCAGGAACTATTCCA+AGG - Chr2:4485974-4485993 None:intergenic 45.0%
AATGATGGCAAGAACGGCAT+TGG - Chr2:4486497-4486516 None:intergenic 45.0%
ACAGTAGCGATCCAAGTGAA+GGG + Chr2:4487839-4487858 MsG0280006649.01.T01:CDS 45.0%
ACATCAGCTACATGCCAAAG+AGG + Chr2:4485395-4485414 MsG0280006649.01.T01:CDS 45.0%
ACCAAGGACCTAGAAAAGGA+AGG + Chr2:4488764-4488783 MsG0280006649.01.T01:CDS 45.0%
ACCTCGAATGATGGCAAGAA+CGG - Chr2:4486503-4486522 None:intergenic 45.0%
ACCTGCAGGAACTATTCCAA+GGG - Chr2:4485973-4485992 None:intergenic 45.0%
ATGTCAGAGCTGAATAAGGG+AGG + Chr2:4488549-4488568 MsG0280006649.01.T01:CDS 45.0%
ATGTGGCTACCATCACACAA+GGG + Chr2:4486646-4486665 MsG0280006649.01.T01:CDS 45.0%
ATTCACTGCTTTCCTGCTGT+AGG + Chr2:4487696-4487715 MsG0280006649.01.T01:intron 45.0%
CAGCAGGAAAGCAGTGAATA+AGG - Chr2:4487695-4487714 None:intergenic 45.0%
CATTGGCAGTCTCCAATCTA+TGG - Chr2:4486722-4486741 None:intergenic 45.0%
CATTTACTGAACCGGGTTTC+CGG + Chr2:4484664-4484683 MsG0280006649.01.T01:five_prime_UTR 45.0%
CCAAGGACCTAGAAAAGGAA+GGG + Chr2:4488765-4488784 MsG0280006649.01.T01:CDS 45.0%
CGGAGGAAAATCTTAGGCTT+TGG + Chr2:4484969-4484988 MsG0280006649.01.T01:CDS 45.0%
CTGGGTTCACAATGTACCTT+GGG + Chr2:4487957-4487976 MsG0280006649.01.T01:CDS 45.0%
GATCAAGTCCAGATAACCGT+CGG - Chr2:4488490-4488509 None:intergenic 45.0%
GCAACAAAGGAGTGATAGAG+TGG - Chr2:4487072-4487091 None:intergenic 45.0%
GCACATTTCTTCCCACCAAA+TGG - Chr2:4485216-4485235 None:intergenic 45.0%
GGCTTCTTCAAAGAGAGGAT+TGG + Chr2:4485928-4485947 MsG0280006649.01.T01:intron 45.0%
GTGTACAATATTGCGTGGTG+TGG - Chr2:4488958-4488977 None:intergenic 45.0%
GTGTCTCTCCGTTGAAAAAG+AGG + Chr2:4484820-4484839 MsG0280006649.01.T01:CDS 45.0%
TATCTCCGAGACGTGAAAAC+CGG + Chr2:4484637-4484656 MsG0280006649.01.T01:five_prime_UTR 45.0%
TCCGTATGTCACGTACCTAA+AGG + Chr2:4488584-4488603 MsG0280006649.01.T01:CDS 45.0%
TCTGGGTTCACAATGTACCT+TGG + Chr2:4487956-4487975 MsG0280006649.01.T01:CDS 45.0%
TGGACTGAAACCTCGAATGA+TGG - Chr2:4486512-4486531 None:intergenic 45.0%
TGGGTTCACAATGTACCTTG+GGG + Chr2:4487958-4487977 MsG0280006649.01.T01:CDS 45.0%
TTAGTCCTTCTGAGCTTCAG+CGG - Chr2:4485733-4485752 None:intergenic 45.0%
! AAACGGGCTTCTTCAAAGAG+AGG + Chr2:4485923-4485942 MsG0280006649.01.T01:intron 45.0%
! ATCAGCATGGTACTGGGATA+AGG - Chr2:4486201-4486220 None:intergenic 45.0%
! CTAAGATTTTCCTCCGACGA+GGG - Chr2:4484965-4484984 None:intergenic 45.0%
! GAAATCCGGTTTTCACGTCT+CGG - Chr2:4484645-4484664 None:intergenic 45.0%
! GCACCGACACTTCTTTCTTA+TGG + Chr2:4485082-4485101 MsG0280006649.01.T01:intron 45.0%
! TTTCTTTTGTGCCTGCACCT+GGG + Chr2:4487761-4487780 MsG0280006649.01.T01:CDS 45.0%
!! ATGGTGAGGTTTTGGCAAGA+GGG + Chr2:4488801-4488820 MsG0280006649.01.T01:CDS 45.0%
!! GTAAGGTACTGGAAATGGCA+TGG + Chr2:4486429-4486448 MsG0280006649.01.T01:intron 45.0%
!! GTCTGAAAAGTATCGGTGGA+TGG + Chr2:4486836-4486855 MsG0280006649.01.T01:CDS 45.0%
!! TCTGCCGACTCTTCAATTTG+AGG + Chr2:4487722-4487741 MsG0280006649.01.T01:CDS 45.0%
!!! CGTCGTTTTTAAACCCTCGT+CGG + Chr2:4484949-4484968 MsG0280006649.01.T01:CDS 45.0%
!!! TAAATTTTGAATTATTAATA+CGG + Chr2:4489078-4489097 MsG0280006649.01.T01:three_prime_UTR 5.0%
AACGAGTCTACCAGCTTCAC+CGG - Chr2:4484921-4484940 None:intergenic 50.0%
AATGGCAGCACCAGATGCAA+AGG + Chr2:4487993-4488012 MsG0280006649.01.T01:CDS 50.0%
AATTGCTTCCGTGACTAGGG+TGG + Chr2:4488104-4488123 MsG0280006649.01.T01:intron 50.0%
ACAGCAATAAAGACGCCCCT+TGG + Chr2:4485954-4485973 MsG0280006649.01.T01:intron 50.0%
ACCCTAGTCACGGAAGCAAT+TGG - Chr2:4488105-4488124 None:intergenic 50.0%
ACCTGGGTTTGAGTCTTACG+GGG + Chr2:4487777-4487796 MsG0280006649.01.T01:CDS 50.0%
ACGCACCAAGGACCTAGAAA+AGG + Chr2:4488760-4488779 MsG0280006649.01.T01:CDS 50.0%
ACTCTTGTGGAAGCTCGTGA+CGG + Chr2:4484884-4484903 MsG0280006649.01.T01:CDS 50.0%
AGATTTGCCTGGGTAACTGC+TGG - Chr2:4487806-4487825 None:intergenic 50.0%
AGCCTTCTGCTCACACTTGT+AGG - Chr2:4488834-4488853 None:intergenic 50.0%
ATTGTGTCTTCAGCACCCCA+AGG - Chr2:4487976-4487995 None:intergenic 50.0%
CAAAGAGGTTGCTCGTTCCT+TGG + Chr2:4485410-4485429 MsG0280006649.01.T01:CDS 50.0%
CAAGGAACGAGCAACCTCTT+TGG - Chr2:4485412-4485431 None:intergenic 50.0%
CACCTGGGTTTGAGTCTTAC+GGG + Chr2:4487776-4487795 MsG0280006649.01.T01:CDS 50.0%
CAGTAGCGATCCAAGTGAAG+GGG + Chr2:4487840-4487859 MsG0280006649.01.T01:CDS 50.0%
CCATAAGCGACAGCTTGATG+TGG + Chr2:4486629-4486648 MsG0280006649.01.T01:CDS 50.0%
CCCAATTGCTTCCGTGACTA+GGG + Chr2:4488101-4488120 MsG0280006649.01.T01:intron 50.0%
CCCTAGTCACGGAAGCAATT+GGG - Chr2:4488104-4488123 None:intergenic 50.0%
CCTCGTCGGAGGAAAATCTT+AGG + Chr2:4484963-4484982 MsG0280006649.01.T01:CDS 50.0%
CCTGCAGGAACTATTCCAAG+GGG - Chr2:4485972-4485991 None:intergenic 50.0%
GATGTGGCTACCATCACACA+AGG + Chr2:4486645-4486664 MsG0280006649.01.T01:CDS 50.0%
GCACCTGGGTTTGAGTCTTA+CGG + Chr2:4487775-4487794 MsG0280006649.01.T01:CDS 50.0%
GGTGGTCGGAAGGAATTCAA+CGG + Chr2:4484798-4484817 MsG0280006649.01.T01:CDS 50.0%
GTTCTCGGATTCGTCTCTAG+TGG + Chr2:4484842-4484861 MsG0280006649.01.T01:CDS 50.0%
TAAGACTCAAACCCAGGTGC+AGG - Chr2:4487775-4487794 None:intergenic 50.0%
TAATGAGGCCACCCTAGTCA+CGG - Chr2:4488115-4488134 None:intergenic 50.0%
TCCCAATTGCTTCCGTGACT+AGG + Chr2:4488100-4488119 MsG0280006649.01.T01:intron 50.0%
TGATACCGCTGAAGCTCAGA+AGG + Chr2:4485725-4485744 MsG0280006649.01.T01:intron 50.0%
TGTGGCTACCATCACACAAG+GGG + Chr2:4486647-4486666 MsG0280006649.01.T01:CDS 50.0%
! CCACATCAAGCTGTCGCTTA+TGG - Chr2:4486632-4486651 None:intergenic 50.0%
! CCCTTCCTTTTCTAGGTCCT+TGG - Chr2:4488768-4488787 None:intergenic 50.0%
! CCTAAGATTTTCCTCCGACG+AGG - Chr2:4484966-4484985 None:intergenic 50.0%
! CGTTTTTAAACCCTCGTCGG+AGG + Chr2:4484952-4484971 MsG0280006649.01.T01:CDS 50.0%
! GTGTGAGCAGAAGGCTTTGA+TGG + Chr2:4488838-4488857 MsG0280006649.01.T01:CDS 50.0%
! GTTTCTTTTGTGCCTGCACC+TGG + Chr2:4487760-4487779 MsG0280006649.01.T01:CDS 50.0%
! TCTGGTTTCCCCTTGTGTGA+TGG - Chr2:4486658-4486677 None:intergenic 50.0%
!! GATGGTGAGGTTTTGGCAAG+AGG + Chr2:4488800-4488819 MsG0280006649.01.T01:CDS 50.0%
!! TTGGGGTGCTGAAGACACAA+TGG + Chr2:4487975-4487994 MsG0280006649.01.T01:CDS 50.0%
ACCAATCTCAGCCGGAAACC+CGG - Chr2:4484678-4484697 None:intergenic 55.0%
ACTAGGGTGGCCTCATTAGG+AGG + Chr2:4488117-4488136 MsG0280006649.01.T01:intron 55.0%
CCCCTTGGAATAGTTCCTGC+AGG + Chr2:4485969-4485988 MsG0280006649.01.T01:intron 55.0%
CCGTCGGTGAGAAGAGCTAA+CGG - Chr2:4484770-4484789 None:intergenic 55.0%
GACGATCCATCTCCGGAAAG+TGG - Chr2:4484706-4484725 None:intergenic 55.0%
GATTGGTGGGGTCCACTTTC+CGG + Chr2:4484691-4484710 MsG0280006649.01.T01:five_prime_UTR 55.0%
GCAGTTCTCCGACGGTTATC+TGG + Chr2:4488479-4488498 MsG0280006649.01.T01:intron 55.0%
GCCGTTCTTGCCATCATTCG+AGG + Chr2:4486499-4486518 MsG0280006649.01.T01:CDS 55.0%
GGTTTCCGGCTGAGATTGGT+GGG + Chr2:4484678-4484697 MsG0280006649.01.T01:five_prime_UTR 55.0%
GTGACTAGGGTGGCCTCATT+AGG + Chr2:4488114-4488133 MsG0280006649.01.T01:intron 55.0%
GTTTCCGGCTGAGATTGGTG+GGG + Chr2:4484679-4484698 MsG0280006649.01.T01:five_prime_UTR 55.0%
TAGCTCTTCTCACCGACGGT+AGG + Chr2:4484771-4484790 MsG0280006649.01.T01:CDS 55.0%
TCCCCGTAAGACTCAAACCC+AGG - Chr2:4487781-4487800 None:intergenic 55.0%
TCGGACCGAGTAACCGTCAA+CGG + Chr2:4484734-4484753 MsG0280006649.01.T01:CDS 55.0%
TTCTCACCGACGGTAGGCTA+TGG + Chr2:4484777-4484796 MsG0280006649.01.T01:CDS 55.0%
! CCGTTAGCTCTTCTCACCGA+CGG + Chr2:4484767-4484786 MsG0280006649.01.T01:CDS 55.0%
!! ACGGCATTGGCTATTGCGCA+AGG - Chr2:4486484-4486503 None:intergenic 55.0%
!! GAGGTTTTGGCAAGAGGGAG+AGG + Chr2:4488806-4488825 MsG0280006649.01.T01:CDS 55.0%
ACCGGGTTTCCGGCTGAGAT+TGG + Chr2:4484674-4484693 MsG0280006649.01.T01:five_prime_UTR 60.0%
CCGAGTAACCGTCAACGGCA+CGG + Chr2:4484739-4484758 MsG0280006649.01.T01:CDS 60.0%
CGACCACCATAGCCTACCGT+CGG - Chr2:4484786-4484805 None:intergenic 60.0%
CGACGGTAGGCTATGGTGGT+CGG + Chr2:4484784-4484803 MsG0280006649.01.T01:CDS 60.0%
GAGTCTACCAGCTTCACCGG+TGG - Chr2:4484918-4484937 None:intergenic 60.0%
GGAACCTGGTACACGCACCA+AGG + Chr2:4488748-4488767 MsG0280006649.01.T01:CDS 60.0%
GGGTTTCCGGCTGAGATTGG+TGG + Chr2:4484677-4484696 MsG0280006649.01.T01:five_prime_UTR 60.0%
GGTAGGCTATGGTGGTCGGA+AGG + Chr2:4484788-4484807 MsG0280006649.01.T01:CDS 60.0%
TCACCGACGGTAGGCTATGG+TGG + Chr2:4484780-4484799 MsG0280006649.01.T01:CDS 60.0%
TGGACCCCACCAATCTCAGC+CGG - Chr2:4484686-4484705 None:intergenic 60.0%
TGGGGTCCACTTTCCGGAGA+TGG + Chr2:4484697-4484716 MsG0280006649.01.T01:exon 60.0%
! AGGTCCTTGGTGCGTGTACC+AGG - Chr2:4488755-4488774 None:intergenic 60.0%
! CCGTGCCGTTGACGGTTACT+CGG - Chr2:4484742-4484761 None:intergenic 60.0%
CGTGACGGTTGCTGCACCAC+CGG + Chr2:4484899-4484918 MsG0280006649.01.T01:CDS 65.0%
GGGGAGTCCAGCAGTTACCC+AGG + Chr2:4487796-4487815 MsG0280006649.01.T01:CDS 65.0%
GTCGGCAGACAGCCTACAGC+AGG - Chr2:4487711-4487730 None:intergenic 65.0%
TGCTGCACCACCGGTGAAGC+TGG + Chr2:4484908-4484927 MsG0280006649.01.T01:CDS 65.0%
! CGGCGTTACCGTGCCGTTGA+CGG - Chr2:4484750-4484769 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 4484474 4489123 4484474 ID=MsG0280006649.01;Name=MsG0280006649.01
Chr2 mRNA 4484474 4489123 4484474 ID=MsG0280006649.01.T01;Parent=MsG0280006649.01;Name=MsG0280006649.01.T01;_AED=0.48;_eAED=0.48;_QI=242|0.54|0.66|1|1|1|12|201|507
Chr2 exon 4484474 4485025 4484474 ID=MsG0280006649.01.T01:exon:1506;Parent=MsG0280006649.01.T01
Chr2 exon 4485181 4485303 4485181 ID=MsG0280006649.01.T01:exon:1507;Parent=MsG0280006649.01.T01
Chr2 exon 4485388 4485488 4485388 ID=MsG0280006649.01.T01:exon:1508;Parent=MsG0280006649.01.T01
Chr2 exon 4486356 4486380 4486356 ID=MsG0280006649.01.T01:exon:1509;Parent=MsG0280006649.01.T01
Chr2 exon 4486434 4486520 4486434 ID=MsG0280006649.01.T01:exon:1510;Parent=MsG0280006649.01.T01
Chr2 exon 4486628 4486705 4486628 ID=MsG0280006649.01.T01:exon:1511;Parent=MsG0280006649.01.T01
Chr2 exon 4486811 4486885 4486811 ID=MsG0280006649.01.T01:exon:1512;Parent=MsG0280006649.01.T01
Chr2 exon 4487176 4487227 4487176 ID=MsG0280006649.01.T01:exon:1513;Parent=MsG0280006649.01.T01
Chr2 exon 4487516 4487576 4487516 ID=MsG0280006649.01.T01:exon:1514;Parent=MsG0280006649.01.T01
Chr2 exon 4487718 4488014 4487718 ID=MsG0280006649.01.T01:exon:1515;Parent=MsG0280006649.01.T01
Chr2 exon 4488483 4488605 4488483 ID=MsG0280006649.01.T01:exon:1516;Parent=MsG0280006649.01.T01
Chr2 exon 4488731 4489123 4488731 ID=MsG0280006649.01.T01:exon:1517;Parent=MsG0280006649.01.T01
Chr2 five_prime_UTR 4484474 4484715 4484474 ID=MsG0280006649.01.T01:five_prime_utr;Parent=MsG0280006649.01.T01
Chr2 CDS 4484716 4485025 4484716 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4485181 4485303 4485181 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4485388 4485488 4485388 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4486356 4486380 4486356 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4486434 4486520 4486434 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4486628 4486705 4486628 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4486811 4486885 4486811 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4487176 4487227 4487176 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4487516 4487576 4487516 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4487718 4488014 4487718 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4488483 4488605 4488483 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 CDS 4488731 4488922 4488731 ID=MsG0280006649.01.T01:cds;Parent=MsG0280006649.01.T01
Chr2 three_prime_UTR 4488923 4489123 4488923 ID=MsG0280006649.01.T01:three_prime_utr;Parent=MsG0280006649.01.T01
Gene Sequence

>MsG0280006649.01.T01

ATGGATCGTCCTTTATTTTCGGACCGAGTAACCGTCAACGGCACGGTAACGCCGTTAGCTCTTCTCACCGACGGTAGGCTATGGTGGTCGGAAGGAATTCAACGGTGTCTCTCCGTTGAAAAAGAGGTTCTCGGATTCGTCTCTAGTGGTTCATACATCAAACTCAAGACTCTTGTGGAAGCTCGTGACGGTTGCTGCACCACCGGTGAAGCTGGTAGACTCGTTCGTAACGACGTCGTTTTTAAACCCTCGTCGGAGGAAAATCTTAGGCTTTGGTGCCTGAAGCTTCATGAATTTATTGATTCTCTCGGTCGACCAAAGAAATTGCTTGTTTTTGTGAATCCATTTGGTGGGAAGAAATGTGCTGTCAAGATTTTTGCTGAACAAGTTAAACCACTTTTTGATGATGCTCAAATTCAACTCACTATACAAGAAACTAAACATCAGCTACATGCCAAAGAGGTTGCTCGTTCCTTGGATATTTCAAAGCACGATGGAATTGTTTGTATTAGTGGAGATGGAATTTTGGTTGAGAATAAATTATCTGTAGATAACGAGTGTACTGGAAATGGCATGGCAAAATCTCTGCTTGATTCAGTTGGTGATCCTTGCGCAATAGCCAATGCCGTTCTTGCCATCATTCGAGGCCATAAGCGACAGCTTGATGTGGCTACCATCACACAAGGGGAAACCAGATTTTTCAGTATATTGATGTTGGCATGGGGTCTAATTGCTGATATTGACATAGAGTCTGAAAAGTATCGGTGGATGGGAAGTGCTCGTCTAGATTTTTATGTTAGGCGCATGAAATGTACGTTTGATTTCTTCGGATTACTTAAGGTGCAAGAAATGTTGATTCTGACATCTATCTGTTATTGTATCATAAATGAACTTTTGGTGGCGAATTCAAGTGCTGTCTGCCGACTCTTCAATTTGAGGCTATACAATGGATCTGTTTCTTTTGTGCCTGCACCTGGGTTTGAGTCTTACGGGGAGTCCAGCAGTTACCCAGGCAAATCTACTATTAGAGGGAACAGTAGCGATCCAAGTGAAGGGGAACATGTTAATTTGCAAACACTTTGTTATCAAGGACCTGAAATAAACTTGGAAAATATGAATTGGAGAGTTATAAATGGACCCTTTATTAGTGTCTGGGTTCACAATGTACCTTGGGGTGCTGAAGACACAATGGCAGCACCAGATGCAAAGTTCTCCGACGGTTATCTGGACTTGATCATTACGAAGAATTGCCCGAAGTTACATTTGTTGTCAATGATGTCAGAGCTGAATAAGGGAGGACACGTGAAATCTCCGTATGTCACGTACCTAAAGGTGAAAGCTTTCAGCTTGGAACCTGGTACACGCACCAAGGACCTAGAAAAGGAAGGGATCATAGATTCAGATGGTGAGGTTTTGGCAAGAGGGAGAGGAACCTACAAGTGTGAGCAGAAGGCTTTGATGGCCTATGATAAATTGCAGATAACAGTGGATAAAGGTTTAGCTACACTTTTTACCCCTATGTAA
Protein sequence

>MsG0280006649.01.T01

MDRPLFSDRVTVNGTVTPLALLTDGRLWWSEGIQRCLSVEKEVLGFVSSGSYIKLKTLVEARDGCCTTGEAGRLVRNDVVFKPSSEENLRLWCLKLHEFIDSLGRPKKLLVFVNPFGGKKCAVKIFAEQVKPLFDDAQIQLTIQETKHQLHAKEVARSLDISKHDGIVCISGDGILVENKLSVDNECTGNGMAKSLLDSVGDPCAIANAVLAIIRGHKRQLDVATITQGETRFFSILMLAWGLIADIDIESEKYRWMGSARLDFYVRRMKCTFDFFGLLKVQEMLILTSICYCIINELLVANSSAVCRLFNLRLYNGSVSFVPAPGFESYGESSSYPGKSTIRGNSSDPSEGEHVNLQTLCYQGPEINLENMNWRVINGPFISVWVHNVPWGAEDTMAAPDAKFSDGYLDLIITKNCPKLHLLSMMSELNKGGHVKSPYVTYLKVKAFSLEPGTRTKDLEKEGIIDSDGEVLARGRGTYKCEQKALMAYDKLQITVDKGLATLFTPM*