AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038923.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038923.01.T01 MTR_7g065290 91.163 215 19 0 1 215 1 215 2.35e-144 402
MsG0780038923.01.T01 MTR_7g065265 89.302 215 23 0 1 215 1 215 8.97e-141 393
MsG0780038923.01.T01 MTR_7g065270 86.512 215 29 0 1 215 1 215 1.77e-136 382
MsG0780038923.01.T01 MTR_7g065590 81.860 215 39 0 1 215 1 215 2.35e-129 364
MsG0780038923.01.T01 MTR_7g065600 75.000 224 56 0 1 224 1 224 1.98e-125 354
MsG0780038923.01.T01 MTR_7g065230 79.535 215 39 1 1 215 1 210 3.35e-123 348
MsG0780038923.01.T01 MTR_7g065260 77.778 216 47 1 1 215 8 223 2.35e-113 324
MsG0780038923.01.T01 MTR_7g065720 69.907 216 64 1 1 215 1 216 2.26e-108 311
MsG0780038923.01.T01 MTR_7g065660 66.512 215 72 0 1 215 1 215 2.71e-107 308
MsG0780038923.01.T01 MTR_7g065630 66.977 215 67 1 1 215 19 229 3.44e-104 301
MsG0780038923.01.T01 MTR_7g065750 67.130 216 70 1 1 215 1 216 3.49e-104 300
MsG0780038923.01.T01 MTR_4g019790 64.651 215 76 0 1 215 1 215 4.14e-103 298
MsG0780038923.01.T01 MTR_7g065740 65.741 216 73 1 1 215 1 216 1.01e-102 296
MsG0780038923.01.T01 MTR_4g019780 61.860 215 80 2 2 215 3 216 1.27e-95 278
MsG0780038923.01.T01 MTR_7g065640 60.930 215 66 1 1 215 1 197 7.41e-94 273
MsG0780038923.01.T01 MTR_7g065710 63.285 207 72 1 8 214 5 207 1.32e-93 273
MsG0780038923.01.T01 MTR_7g065680 64.186 215 73 1 1 215 1 211 8.65e-90 264
MsG0780038923.01.T01 MTR_7g065700 64.953 214 71 1 1 214 1 210 1.73e-89 263
MsG0780038923.01.T01 MTR_6g080440 49.519 208 103 2 7 213 3 209 8.25e-68 208
MsG0780038923.01.T01 MTR_1g090150 47.489 219 110 3 6 221 2 218 1.73e-65 202
MsG0780038923.01.T01 MTR_3g099757 45.946 222 118 2 5 225 3 223 2.26e-62 194
MsG0780038923.01.T01 MTR_8g087425 44.186 215 118 2 4 217 2 215 5.14e-60 188
MsG0780038923.01.T01 MTR_8g087410 44.444 216 117 3 4 217 3 217 1.42e-56 179
MsG0780038923.01.T01 MTR_1g115195 45.274 201 107 2 7 204 3 203 2.54e-56 179
MsG0780038923.01.T01 MTR_5g040430 42.601 223 120 3 1 216 1 222 5.15e-56 178
MsG0780038923.01.T01 MTR_1g090070 43.192 213 118 1 7 216 9 221 1.60e-53 172
MsG0780038923.01.T01 MTR_4g059730 41.860 215 119 3 6 216 3 215 1.98e-52 169
MsG0780038923.01.T01 MTR_5g037380 41.667 228 123 3 1 220 1 226 5.58e-52 168
MsG0780038923.01.T01 MTR_1g090060 42.584 209 116 2 7 212 3 210 3.05e-51 166
MsG0780038923.01.T01 MTR_1g090100 41.038 212 121 2 8 216 3 213 6.42e-50 162
MsG0780038923.01.T01 MTR_1g090090 39.906 213 124 2 7 216 3 214 3.78e-49 160
MsG0780038923.01.T01 MTR_8g061950 40.991 222 123 3 5 218 3 224 3.93e-49 160
MsG0780038923.01.T01 MTR_3g467420 43.216 199 108 5 16 212 18 213 3.98e-45 150
MsG0780038923.01.T01 MTR_2g070130 40.686 204 116 5 6 207 3 203 9.75e-45 149
MsG0780038923.01.T01 MTR_2g070150 40.196 204 117 5 6 207 3 203 2.20e-44 147
MsG0780038923.01.T01 MTR_3g467430 40.758 211 120 5 4 212 6 213 3.92e-43 145
MsG0780038923.01.T01 MTR_2g070140 40.722 194 110 5 21 212 2 192 4.17e-43 144
MsG0780038923.01.T01 MTR_4g124130 45.312 192 95 6 5 191 2 188 5.39e-43 144
MsG0780038923.01.T01 MTR_2g070200 39.706 204 119 3 6 207 3 204 2.62e-42 143
MsG0780038923.01.T01 MTR_2g070210 39.545 220 124 7 6 220 3 218 3.18e-42 142
MsG0780038923.01.T01 MTR_2g070180 38.660 194 114 4 16 207 13 203 4.36e-41 139
MsG0780038923.01.T01 MTR_8g056940 44.134 179 93 5 16 191 13 187 7.56e-41 139
MsG0780038923.01.T01 MTR_2g070120 36.406 217 131 5 6 219 3 215 2.75e-40 137
MsG0780038923.01.T01 MTR_2g070070 37.559 213 128 4 7 217 4 213 3.27e-37 130
MsG0780038923.01.T01 MTR_2g070060 35.648 216 134 4 7 220 4 216 3.47e-36 127
MsG0780038923.01.T01 MTR_5g076900 37.736 212 127 5 3 212 2 210 4.78e-36 127
MsG0780038923.01.T01 MTR_0186s0030 47.328 131 65 3 16 144 13 141 2.18e-33 117
MsG0780038923.01.T01 MTR_2g070110 37.255 204 122 4 16 217 13 212 1.69e-31 115
MsG0780038923.01.T01 MTR_2g072120 46.154 65 34 1 51 114 2 66 1.88e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038923.01.T01 AT3G09270 55.760 217 92 4 3 216 2 217 8.19e-80 239
MsG0780038923.01.T01 AT2G29420 48.131 214 109 2 3 215 5 217 1.40e-70 215
MsG0780038923.01.T01 AT2G29490 48.571 210 103 4 1 207 1 208 7.69e-61 190
MsG0780038923.01.T01 AT2G29450 48.792 207 104 2 3 207 2 208 9.56e-61 190
MsG0780038923.01.T01 AT2G29460 46.411 209 109 3 1 207 1 208 1.75e-57 182
MsG0780038923.01.T01 AT2G29480 47.368 209 107 3 1 207 1 208 2.19e-57 182
MsG0780038923.01.T01 AT2G29440 46.411 209 108 4 1 207 1 207 7.76e-56 177
MsG0780038923.01.T01 AT2G29470 45.498 211 109 5 1 207 1 209 3.31e-55 176
MsG0780038923.01.T01 AT1G10370 41.176 221 121 3 1 214 1 219 1.67e-50 164
MsG0780038923.01.T01 AT1G69930 38.813 219 128 2 2 214 7 225 4.27e-50 163
MsG0780038923.01.T01 AT1G59700 43.694 222 117 4 5 218 4 225 1.01e-49 162
MsG0780038923.01.T01 AT5G62480 40.179 224 123 3 8 221 9 231 2.28e-49 162
MsG0780038923.01.T01 AT1G59670 42.308 208 112 3 5 204 4 211 2.73e-47 156
MsG0780038923.01.T01 AT1G74590 37.991 229 135 3 1 223 1 228 5.08e-47 155
MsG0780038923.01.T01 AT1G78380 40.845 213 121 4 7 217 4 213 8.58e-47 154
MsG0780038923.01.T01 AT1G27130 39.189 222 126 4 1 214 1 221 1.54e-46 154
MsG0780038923.01.T01 AT1G78340 41.096 219 123 5 6 221 3 218 2.68e-45 150
MsG0780038923.01.T01 AT1G78370 39.196 199 116 4 16 212 13 208 6.33e-45 149
MsG0780038923.01.T01 AT1G10360 37.864 206 121 2 6 204 4 209 1.15e-44 149
MsG0780038923.01.T01 AT1G17170 40.191 209 119 4 6 212 3 207 7.81e-44 147
MsG0780038923.01.T01 AT1G78320 39.904 208 120 4 5 210 2 206 1.67e-43 146
MsG0780038923.01.T01 AT1G53680 39.524 210 122 4 1 207 1 208 4.35e-42 142
MsG0780038923.01.T01 AT1G27140 37.500 216 125 4 1 207 1 215 5.95e-42 142
MsG0780038923.01.T01 AT1G69920 37.946 224 129 4 1 214 26 249 7.47e-42 143
MsG0780038923.01.T01 AT1G17180 37.850 214 128 4 6 217 3 213 1.43e-41 141
MsG0780038923.01.T01 AT1G78360 39.815 216 124 5 7 219 4 216 1.07e-39 136
MsG0780038923.01.T01 AT3G43800 37.387 222 129 7 4 218 2 220 3.29e-39 135
MsG0780038923.01.T01 AT1G17190 42.135 178 98 4 16 191 14 188 7.48e-38 131
MsG0780038923.01.T01 AT5G62480 31.839 223 117 3 8 221 9 205 2.06e-30 112
MsG0780038923.01.T01 AT5G62480 31.839 223 116 3 8 221 9 204 2.46e-30 112
MsG0780038923.01.T01 AT1G78320 32.367 207 110 4 5 210 2 179 5.54e-26 100
MsG0780038923.01.T01 AT2G02380 26.512 215 139 7 5 207 9 216 1.78e-11 62.0

Find 49 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAATAGATCAATTTA+AGG 0.159458 7:-55399248 None:intergenic
AAAGAGCCTTGGCACGTTTC+TGG 0.164876 7:-55400232 MsG0780038923.01.T01:CDS
TACCTTGTCATCTATGAAAT+TGG 0.177857 7:+55400208 None:intergenic
TTGGATGATTGTTGAATTCT+TGG 0.233990 7:+55399339 None:intergenic
CCAAGTGCTTCTTGTATAAC+AGG 0.302176 7:+55399410 None:intergenic
TTCTTTGGTGGGGAGGATAT+TGG 0.313435 7:-55399473 MsG0780038923.01.T01:CDS
TAAGGATCATTAGGCAAGAT+AGG 0.313856 7:+55400257 None:intergenic
CTCTACGATGGCATCAAATA+AGG 0.319615 7:-55400516 None:intergenic
TGGCTCCAATTGTAAAGCTT+TGG 0.323925 7:+55399359 None:intergenic
GAGCTCAAGGACAAATTCTT+TGG 0.339009 7:-55399488 MsG0780038923.01.T01:CDS
ACAGGAACTTTCTTATAAAC+AGG 0.340787 7:+55400356 None:intergenic
GACTTTCATAGCTTTATAGA+AGG 0.367540 7:+55399277 None:intergenic
CAACAATCATCCAATTGTTA+AGG 0.374730 7:-55399330 MsG0780038923.01.T01:CDS
GTTCCTGTATTAGTTCATAA+TGG 0.400419 7:-55400341 MsG0780038923.01.T01:CDS
AATTTCCAAAGCTTTACAAT+TGG 0.423886 7:-55399364 MsG0780038923.01.T01:CDS
ATCTCCACCCTTGTTACAAA+TGG 0.430811 7:+55400461 None:intergenic
GCCTCCTAGAGAGATCCTTT+TGG 0.438799 7:-55399300 MsG0780038923.01.T01:CDS
GGAGATTGCTCTAAAATTGA+AGG 0.444678 7:-55400444 MsG0780038923.01.T01:CDS
ACAAGCTTTCCGTACACCAT+TGG 0.494016 7:+55399583 None:intergenic
TTGCCATTATGAACTAATAC+AGG 0.495358 7:+55400338 None:intergenic
ATCACAAGTGACTCTGCTAT+AGG 0.496284 7:+55400314 None:intergenic
AAGCTTTGGAAATTCTTCAC+TGG 0.499393 7:+55399373 None:intergenic
AATATGAGCAAGAAAAGGTT+GGG 0.503590 7:-55400409 MsG0780038923.01.T01:CDS
TTGAGTATATTGATGAGACT+TGG 0.504629 7:-55400289 MsG0780038923.01.T01:CDS
AAGGATCATTAGGCAAGATA+GGG 0.505915 7:+55400258 None:intergenic
TAGCTTTATAGAAGGCCAAA+AGG 0.507889 7:+55399285 None:intergenic
CTCAAGGACAAATTCTTTGG+TGG 0.512720 7:-55399485 MsG0780038923.01.T01:CDS
AAATATGAGCAAGAAAAGGT+TGG 0.516900 7:-55400410 MsG0780038923.01.T01:CDS
TCAAGGACAAATTCTTTGGT+GGG 0.523453 7:-55399484 MsG0780038923.01.T01:CDS
AGAACGTGAGAAGAGTATTG+AGG 0.526929 7:-55399543 MsG0780038923.01.T01:CDS
CCTGTTATACAAGAAGCACT+TGG 0.528703 7:-55399410 MsG0780038923.01.T01:CDS
ATTTCTTGAGAATGAGCTCA+AGG 0.546430 7:-55399501 MsG0780038923.01.T01:CDS
ATCAAATAAGGAAGAGGTGA+AGG 0.549693 7:-55400504 MsG0780038923.01.T01:CDS
ATACAAATATGAGCAAGAAA+AGG 0.550926 7:-55400414 MsG0780038923.01.T01:CDS
GAGTATTGAGGAAACAAAAG+AGG 0.559224 7:-55399531 MsG0780038923.01.T01:CDS
TGATCCTTATAAAAGAGCCT+TGG 0.561258 7:-55400243 MsG0780038923.01.T01:CDS
ACCAGTGCTCCAATGGTGTA+CGG 0.565464 7:-55399592 MsG0780038923.01.T01:intron
AAGGCCAAAAGGATCTCTCT+AGG 0.571190 7:+55399296 None:intergenic
TGGAAAGTCCATTTGTAACA+AGG 0.573831 7:-55400469 MsG0780038923.01.T01:CDS
CAAGGACAAATTCTTTGGTG+GGG 0.574827 7:-55399483 MsG0780038923.01.T01:CDS
GATGGCATCAAATAAGGAAG+AGG 0.575114 7:-55400510 MsG0780038923.01.T01:CDS
GGACAAATTCTTTGGTGGGG+AGG 0.579613 7:-55399480 MsG0780038923.01.T01:CDS
TTGTGAGACCAGTGCTCCAA+TGG 0.602330 7:-55399599 MsG0780038923.01.T01:intron
GGAAAGTCCATTTGTAACAA+GGG 0.613221 7:-55400468 MsG0780038923.01.T01:CDS
GAGATTGCTCTAAAATTGAA+GGG 0.615792 7:-55400443 MsG0780038923.01.T01:CDS
GTCCAATTTCATAGATGACA+AGG 0.633419 7:-55400210 MsG0780038923.01.T01:intron
AAGTCCATTTGTAACAAGGG+TGG 0.642673 7:-55400465 MsG0780038923.01.T01:CDS
ATTGGACCAGAAACGTGCCA+AGG 0.673197 7:+55400226 None:intergenic
GCCAAAAGGATCTCTCTAGG+AGG 0.687746 7:+55399299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTATTATTATTTTTTA+AGG - Chr7:55399632-55399651 MsG0780038923.01.T01:intron 0.0%
!!! GATTAACAAAATAATTTTTT+TGG - Chr7:55399755-55399774 MsG0780038923.01.T01:intron 10.0%
!! TTTGTTAAAAAACAAACAAT+TGG + Chr7:55399951-55399970 None:intergenic 15.0%
!!! AAGTTAATTGATTTGTTTTT+AGG + Chr7:55400083-55400102 None:intergenic 15.0%
!!! TGAAACAATTTTTAATCAAA+TGG + Chr7:55399861-55399880 None:intergenic 15.0%
!! ATTCGATTATTAGATTATCA+AGG - Chr7:55399787-55399806 MsG0780038923.01.T01:intron 20.0%
!! TTCGATTATTAGATTATCAA+GGG - Chr7:55399788-55399807 MsG0780038923.01.T01:intron 20.0%
!!! TTGATAATCTAATAATCGAA+TGG + Chr7:55399788-55399807 None:intergenic 20.0%
!!! TTTAGGTTAAATATAACATG+TGG + Chr7:55400066-55400085 None:intergenic 20.0%
! AAAAAACAAACAATTGGACT+CGG + Chr7:55399945-55399964 None:intergenic 25.0%
! AATTTCCAAAGCTTTACAAT+TGG - Chr7:55400395-55400414 MsG0780038923.01.T01:CDS 25.0%
! ACATGGATAAAAATAGAAGA+GGG + Chr7:55399584-55399603 None:intergenic 25.0%
! ATACAAATATGAGCAAGAAA+AGG - Chr7:55399345-55399364 MsG0780038923.01.T01:CDS 25.0%
! TAAAGTTGGATATATGAACT+TGG + Chr7:55399616-55399635 None:intergenic 25.0%
! TACATGGATAAAAATAGAAG+AGG + Chr7:55399585-55399604 None:intergenic 25.0%
! TATTTAGTGCTAACTAAAGT+TGG + Chr7:55399663-55399682 None:intergenic 25.0%
!! ATGGTACTTTATTTACCTTT+CGG + Chr7:55399842-55399861 None:intergenic 25.0%
!! CTAAGTAAATTTGAGATCTT+AGG - Chr7:55399688-55399707 MsG0780038923.01.T01:intron 25.0%
!!! CTTTTTTTTGTTGACAACAT+GGG + Chr7:55399726-55399745 None:intergenic 25.0%
!!! TCTTTTTTTTGTTGACAACA+TGG + Chr7:55399727-55399746 None:intergenic 25.0%
!!! TGAGAAAGTATCTAACTTAA+AGG - Chr7:55400039-55400058 MsG0780038923.01.T01:intron 25.0%
AAAAACAAACAATTGGACTC+GGG + Chr7:55399944-55399963 None:intergenic 30.0%
AAATATGAGCAAGAAAAGGT+TGG - Chr7:55399349-55399368 MsG0780038923.01.T01:CDS 30.0%
AAGAATCTGAATTCGATTTC+TGG + Chr7:55399885-55399904 None:intergenic 30.0%
AATATGAGCAAGAAAAGGTT+GGG - Chr7:55399350-55399369 MsG0780038923.01.T01:CDS 30.0%
AATCCAAAAAGCTATGAGTA+CGG + Chr7:55400329-55400348 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG + Chr7:55399406-55399425 None:intergenic 30.0%
AGAATCTGAATTCGATTTCT+GGG + Chr7:55399884-55399903 None:intergenic 30.0%
CAACAATCATCCAATTGTTA+AGG - Chr7:55400429-55400448 MsG0780038923.01.T01:CDS 30.0%
GAGTAATGAGTTCCATAAAA+TGG + Chr7:55399920-55399939 None:intergenic 30.0%
GTTCCTGTATTAGTTCATAA+TGG - Chr7:55399418-55399437 MsG0780038923.01.T01:CDS 30.0%
TACCTTGTCATCTATGAAAT+TGG + Chr7:55399554-55399573 None:intergenic 30.0%
TTGAGTATATTGATGAGACT+TGG - Chr7:55399470-55399489 MsG0780038923.01.T01:CDS 30.0%
TTGCCATTATGAACTAATAC+AGG + Chr7:55399424-55399443 None:intergenic 30.0%
TTGGATGATTGTTGAATTCT+TGG + Chr7:55400423-55400442 None:intergenic 30.0%
! GATCTTGATAATTCGAACTT+CGG - Chr7:55399816-55399835 MsG0780038923.01.T01:intron 30.0%
! GCTCTTTTATAAGGATCATT+AGG + Chr7:55399514-55399533 None:intergenic 30.0%
! GGCAATTTTTCCTTAACAAT+TGG + Chr7:55400442-55400461 None:intergenic 30.0%
!! CTAAACAATTCGCCATTTTA+TGG - Chr7:55399905-55399924 MsG0780038923.01.T01:intron 30.0%
!! GACTTTCATAGCTTTATAGA+AGG + Chr7:55400485-55400504 None:intergenic 30.0%
!! GAGATTGCTCTAAAATTGAA+GGG - Chr7:55399316-55399335 MsG0780038923.01.T01:CDS 30.0%
AAGGATCATTAGGCAAGATA+GGG + Chr7:55399504-55399523 None:intergenic 35.0%
ATCAAATAAGGAAGAGGTGA+AGG - Chr7:55399255-55399274 MsG0780038923.01.T01:CDS 35.0%
ATTTCTTGAGAATGAGCTCA+AGG - Chr7:55400258-55400277 MsG0780038923.01.T01:CDS 35.0%
GGAAAGTCCATTTGTAACAA+GGG - Chr7:55399291-55399310 MsG0780038923.01.T01:CDS 35.0%
GTCCAATTTCATAGATGACA+AGG - Chr7:55399549-55399568 MsG0780038923.01.T01:CDS 35.0%
TAAGGATCATTAGGCAAGAT+AGG + Chr7:55399505-55399524 None:intergenic 35.0%
TCAAGGACAAATTCTTTGGT+GGG - Chr7:55400275-55400294 MsG0780038923.01.T01:CDS 35.0%
TGATCCTTATAAAAGAGCCT+TGG - Chr7:55399516-55399535 MsG0780038923.01.T01:CDS 35.0%
TGGAAAGTCCATTTGTAACA+AGG - Chr7:55399290-55399309 MsG0780038923.01.T01:CDS 35.0%
!! AAGCTTTGGAAATTCTTCAC+TGG + Chr7:55400389-55400408 None:intergenic 35.0%
!! GAGTATTGAGGAAACAAAAG+AGG - Chr7:55400228-55400247 MsG0780038923.01.T01:CDS 35.0%
!! GGAGATTGCTCTAAAATTGA+AGG - Chr7:55399315-55399334 MsG0780038923.01.T01:CDS 35.0%
!! TAGCTTTATAGAAGGCCAAA+AGG + Chr7:55400477-55400496 None:intergenic 35.0%
AAGTCCATTTGTAACAAGGG+TGG - Chr7:55399294-55399313 MsG0780038923.01.T01:CDS 40.0%
ATCACAAGTGACTCTGCTAT+AGG + Chr7:55399448-55399467 None:intergenic 40.0%
ATCTCCACCCTTGTTACAAA+TGG + Chr7:55399301-55399320 None:intergenic 40.0%
CAAGGACAAATTCTTTGGTG+GGG - Chr7:55400276-55400295 MsG0780038923.01.T01:CDS 40.0%
CCAAGTGCTTCTTGTATAAC+AGG + Chr7:55400352-55400371 None:intergenic 40.0%
CTCAAGGACAAATTCTTTGG+TGG - Chr7:55400274-55400293 MsG0780038923.01.T01:CDS 40.0%
GAGCTCAAGGACAAATTCTT+TGG - Chr7:55400271-55400290 MsG0780038923.01.T01:CDS 40.0%
TGGCTCCAATTGTAAAGCTT+TGG + Chr7:55400403-55400422 None:intergenic 40.0%
TTGTTGACAACATGGGTCTA+AGG + Chr7:55399719-55399738 None:intergenic 40.0%
! AAGGAAGAGGTGAAGGTTTT+TGG - Chr7:55399262-55399281 MsG0780038923.01.T01:CDS 40.0%
!! AGAACGTGAGAAGAGTATTG+AGG - Chr7:55400216-55400235 MsG0780038923.01.T01:CDS 40.0%
!! AGAGGTGAAGGTTTTTGGAT+TGG - Chr7:55399267-55399286 MsG0780038923.01.T01:CDS 40.0%
!! AGCACTGGTCTCACAAATTA+AGG + Chr7:55400156-55400175 None:intergenic 40.0%
!! CCTGTTATACAAGAAGCACT+TGG - Chr7:55400349-55400368 MsG0780038923.01.T01:CDS 40.0%
AAGGCCAAAAGGATCTCTCT+AGG + Chr7:55400466-55400485 None:intergenic 45.0%
ACAAGCTTTCCGTACACCAT+TGG + Chr7:55400179-55400198 None:intergenic 45.0%
GAACTTGGACTTGAGCTACA+TGG + Chr7:55399601-55399620 None:intergenic 45.0%
TAATTCGAACTTCGGCCGAA+AGG - Chr7:55399824-55399843 MsG0780038923.01.T01:intron 45.0%
TTCTTTGGTGGGGAGGATAT+TGG - Chr7:55400286-55400305 MsG0780038923.01.T01:CDS 45.0%
! CGTGCCAAGGCTCTTTTATA+AGG + Chr7:55399523-55399542 None:intergenic 45.0%
! CTGCCGTACTCATAGCTTTT+TGG - Chr7:55400323-55400342 MsG0780038923.01.T01:CDS 45.0%
!! GGTGAAGGTTTTTGGATTGG+TGG - Chr7:55399270-55399289 MsG0780038923.01.T01:CDS 45.0%
!! AAAAATAATAATAATAAAGT+TGG + Chr7:55399630-55399649 None:intergenic 5.0%
!!! ATTAACAAAATAATTTTTTT+GGG - Chr7:55399756-55399775 MsG0780038923.01.T01:intron 5.0%
AAAGAGCCTTGGCACGTTTC+TGG - Chr7:55399527-55399546 MsG0780038923.01.T01:CDS 50.0%
ACCAGTGCTCCAATGGTGTA+CGG - Chr7:55400167-55400186 MsG0780038923.01.T01:intron 50.0%
ATTGGACCAGAAACGTGCCA+AGG + Chr7:55399536-55399555 None:intergenic 50.0%
GCCAAAAGGATCTCTCTAGG+AGG + Chr7:55400463-55400482 None:intergenic 50.0%
GGACAAATTCTTTGGTGGGG+AGG - Chr7:55400279-55400298 MsG0780038923.01.T01:CDS 50.0%
TTGTGAGACCAGTGCTCCAA+TGG - Chr7:55400160-55400179 MsG0780038923.01.T01:intron 50.0%
! GCCTCCTAGAGAGATCCTTT+TGG - Chr7:55400459-55400478 MsG0780038923.01.T01:CDS 50.0%
TCCGTACACCATTGGAGCAC+TGG + Chr7:55400171-55400190 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 55399250 55400531 55399250 ID=MsG0780038923.01;Name=MsG0780038923.01
Chr7 mRNA 55399250 55400531 55399250 ID=MsG0780038923.01.T01;Parent=MsG0780038923.01;Name=MsG0780038923.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|226
Chr7 exon 55400211 55400531 55400211 ID=MsG0780038923.01.T01:exon:15448;Parent=MsG0780038923.01.T01
Chr7 exon 55399250 55399609 55399250 ID=MsG0780038923.01.T01:exon:15447;Parent=MsG0780038923.01.T01
Chr7 CDS 55400211 55400531 55400211 ID=MsG0780038923.01.T01:cds;Parent=MsG0780038923.01.T01
Chr7 CDS 55399250 55399609 55399250 ID=MsG0780038923.01.T01:cds;Parent=MsG0780038923.01.T01
Gene Sequence

>MsG0780038923.01.T01

ATGGCATCAAATAAGGAAGAGGTGAAGGTTTTTGGATTGGTGGAAAGTCCATTTGTAACAAGGGTGGAGATTGCTCTAAAATTGAAGGGAGTTGAATACAAATATGAGCAAGAAAAGGTTGGGAACTTGAGTGATACAGTCATCAAATACAATCCTGTTTATAAGAAAGTTCCTGTATTAGTTCATAATGGCAAGCCTATAGCAGAGTCACTTGTGATTCTTGAGTATATTGATGAGACTTGGAAACAAAACCCTATCTTGCCTAATGATCCTTATAAAAGAGCCTTGGCACGTTTCTGGTCCAATTTCATAGATGACAAGTGCTCCAATGGTGTACGGAAAGCTTGTTACACTCTTGATGAGAAAGAACGTGAGAAGAGTATTGAGGAAACAAAAGAGGCTCTTCAATTTCTTGAGAATGAGCTCAAGGACAAATTCTTTGGTGGGGAGGATATTGGCTTTGTTGACATTGCTGCCGTACTCATAGCTTTTTGGATTCCTGTTATACAAGAAGCACTTGGACTGAAATTGTTCACCAGTGAAGAATTTCCAAAGCTTTACAATTGGAGCCAAGAATTCAACAATCATCCAATTGTTAAGGAAAAATTGCCTCCTAGAGAGATCCTTTTGGCCTTCTATAAAGCTATGAAAGTCTTGTTGCTTCAAAATAGATCAATTTAA

Protein sequence

>MsG0780038923.01.T01

MASNKEEVKVFGLVESPFVTRVEIALKLKGVEYKYEQEKVGNLSDTVIKYNPVYKKVPVLVHNGKPIAESLVILEYIDETWKQNPILPNDPYKRALARFWSNFIDDKCSNGVRKACYTLDEKEREKSIEETKEALQFLENELKDKFFGGEDIGFVDIAAVLIAFWIPVIQEALGLKLFTSEEFPKLYNWSQEFNNHPIVKEKLPPREILLAFYKAMKVLLLQNRSI*