AlfalfaGEDB | MsG0280007025.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007025.01

KEGG: K10609
GO: GO:0006511 GO:0030145 GO:0031461 GO:0031625 GO:0045735
PFAM: PF00190 PF00888 PF10557

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007025.01.T01	XP_022715540.1	65.493	710	110	11	35	614	58	762	0	848

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007025.01.T01	Q8LGH4	71.403	556	73	7	145	614	237	792	0	734

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007025.01.T01	A0A6P5WHG0	65.493	710	110	11	35	614	58	762	0.0	848

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000762.01	MsG0280007025.01	0.805692	1.180574e-49	6.287142e-47
MsG0280007025.01	MsG0380012658.01	0.813058	3.102405e-51	2.005102e-48
MsG0280007025.01	MsG0380014609.01	0.821064	4.924699e-53	3.965449e-50
MsG0280007025.01	MsG0380017579.01	0.808966	2.388981e-50	1.384997e-47
MsG0280007025.01	MsG0480022311.01	0.811010	8.668044e-51	5.305986e-48
MsG0280007025.01	MsG0480023179.01	0.805988	1.023068e-49	5.489788e-47
MsG0280007025.01	MsG0780040808.01	0.821063	4.926832e-53	3.967059e-50
MsG0280007025.01	MsG0780041501.01	0.803745	3.010377e-49	1.524769e-46
MsG0280007025.01	MsG0880042694.01	0.813851	2.076217e-51	1.371089e-48
MsG0280007025.01	MsG0880043304.01	0.805813	1.113540e-49	5.948368e-47

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0280007025.01	MsG0280008032.01	PPI
MsG0280007025.01	MsG0680030747.01	PPI

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007025.01.T01	MTR_2g019260	79.317	556	29	7	145	614	237	792	0.0	838
MsG0280007025.01.T01	MTR_2g019260	97.115	104	2	1	1	104	1	103	2.34e-46	178
MsG0280007025.01.T01	MTR_2g019260	77.692	520	30	7	145	578	237	756	0.0	763
MsG0280007025.01.T01	MTR_2g019260	97.115	104	2	1	1	104	1	103	1.71e-46	178
MsG0280007025.01.T01	MTR_6g011700	39.042	543	257	13	145	614	164	705	4.85e-106	341
MsG0280007025.01.T01	MTR_8g056030	36.870	575	267	12	136	614	157	731	1.14e-103	335
MsG0280007025.01.T01	MTR_5g046410	93.827	162	10	0	617	778	42	203	1.88e-102	315
MsG0280007025.01.T01	MTR_5g046430	93.827	162	10	0	617	778	42	203	1.88e-102	315
MsG0280007025.01.T01	MTR_4g017030	93.827	162	10	0	617	778	42	203	1.88e-102	315
MsG0280007025.01.T01	MTR_2g019250	93.827	162	10	0	617	778	42	203	2.56e-102	314

Showing 1 to 10 of 84 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007025.01.T01	AT5G46210	71.403	556	73	7	145	614	237	792	0.0	734
MsG0280007025.01.T01	AT5G46210	46.957	115	38	4	1	104	1	103	1.60e-13	75.1
MsG0280007025.01.T01	AT1G26830	37.217	575	265	11	136	614	158	732	2.99e-109	350
MsG0280007025.01.T01	AT1G69670	36.522	575	269	11	136	614	158	732	1.84e-107	345
MsG0280007025.01.T01	AT1G69670	36.522	575	269	11	136	614	158	732	1.84e-107	345
MsG0280007025.01.T01	AT4G02570	30.017	583	291	12	145	614	160	738	4.59e-70	245
MsG0280007025.01.T01	AT4G02570	30.017	583	291	12	145	614	160	738	4.59e-70	245
MsG0280007025.01.T01	AT4G02570	30.017	583	291	12	145	614	160	738	4.59e-70	245
MsG0280007025.01.T01	AT4G02570	30.017	583	291	12	145	614	160	738	4.59e-70	245
MsG0280007025.01.T01	AT3G05950	68.902	164	49	1	617	778	45	208	9.95e-69	226

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 189 sgRNAs with CRISPR-Local

Find 1241 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCAGATCGAGCGTT+TGG	0.415504	2:+9556963	None:intergenic
AAAAGTTCGTGTTCTACAAA+AGG	0.437752	2:-9544152	MsG0280007025.01.T01:intron
AAAATTCAGATGTACATTCA+AGG	0.475948	2:+9548832	None:intergenic
AAACCTACCGACCTTCCTCG+CGG	0.739045	2:-9556716	MsG0280007025.01.T01:CDS
AAACTTCGTGCGGGTAATAA+GGG	0.344019	2:-9546387	MsG0280007025.01.T01:CDS
AAAGAGTGCTTCAATTGACG+CGG	0.692090	2:-9546092	MsG0280007025.01.T01:CDS
AAAGGGCAAGGATGTGTTTG+AGG	0.509726	2:-9546155	MsG0280007025.01.T01:intron
AACATGCAACAGATGCCAAA+GGG	0.584238	2:-9544039	MsG0280007025.01.T01:intron
AACCAGCTGATTTAAAGAAA+AGG	0.437814	2:-9542441	MsG0280007025.01.T01:CDS
AACTGGACAGGGCATTGTTA+TGG	0.399445	2:-9547953	MsG0280007025.01.T01:CDS

Showing 1 to 10 of 189 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAAGAAATGCCTCCA+TGG	+	Chr2:9546396-9546415	None:intergenic	30.0%
AAAAGTTCGTGTTCTACAAA+AGG	-	Chr2:9550841-9550860	MsG0280007025.01.T01:intron	30.0%
AAACAACCATTGTGAACTAA+AGG	-	Chr2:9552995-9553014	MsG0280007025.01.T01:intron	30.0%
AAAGAGGCGATAAACAATAT+TGG	-	Chr2:9549353-9549372	MsG0280007025.01.T01:intron	30.0%
AAGCAAATCACTTTCAAAAG+GGG	+	Chr2:9551718-9551737	None:intergenic	30.0%
AAGTTCGTATATCATTTGCT+TGG	-	Chr2:9549569-9549588	MsG0280007025.01.T01:intron	30.0%
AATAATTCTTTGATGAGTGC+AGG	-	Chr2:9550303-9550322	MsG0280007025.01.T01:intron	30.0%
AATCTCCAAGACACTTTATT+TGG	-	Chr2:9541458-9541477	MsG0280007025.01.T01:intron	30.0%
AATGTGAAATGAGGTAATCT+TGG	-	Chr2:9541567-9541586	MsG0280007025.01.T01:intron	30.0%
AATTCCCAAAGAAAAAGACA+TGG	+	Chr2:9549195-9549214	None:intergenic	30.0%

Showing 1 to 10 of 1,241 entries

Previous1 2 3 4 5…125Next

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	9538028	9556987	9538028	ID=MsG0280007025.01;Name=MsG0280007025.01
Chr2	mRNA	9538028	9556987	9538028	ID=MsG0280007025.01.T01;Parent=MsG0280007025.01;Name=MsG0280007025.01.T01;_AED=0.42;_eAED=0.42;_QI=114\|0.57\|0.66\|1\|0.85\|0.93\|15\|225\|782
Chr2	exon	9538028	9538757	9538028	ID=MsG0280007025.01.T01:exon:8388;Parent=MsG0280007025.01.T01
Chr2	exon	9542367	9542479	9542367	ID=MsG0280007025.01.T01:exon:8387;Parent=MsG0280007025.01.T01
Chr2	exon	9542836	9542916	9542836	ID=MsG0280007025.01.T01:exon:8386;Parent=MsG0280007025.01.T01
Chr2	exon	9543709	9543789	9543709	ID=MsG0280007025.01.T01:exon:8385;Parent=MsG0280007025.01.T01
Chr2	exon	9543969	9544049	9543969	ID=MsG0280007025.01.T01:exon:8384;Parent=MsG0280007025.01.T01
Chr2	exon	9544153	9544249	9544153	ID=MsG0280007025.01.T01:exon:8383;Parent=MsG0280007025.01.T01
Chr2	exon	9544396	9544526	9544396	ID=MsG0280007025.01.T01:exon:8382;Parent=MsG0280007025.01.T01
Chr2	exon	9544631	9544690	9544631	ID=MsG0280007025.01.T01:exon:8381;Parent=MsG0280007025.01.T01
Chr2	exon	9545926	9545979	9545926	ID=MsG0280007025.01.T01:exon:8380;Parent=MsG0280007025.01.T01
Chr2	exon	9546072	9546173	9546072	ID=MsG0280007025.01.T01:exon:8379;Parent=MsG0280007025.01.T01
Chr2	exon	9546323	9546448	9546323	ID=MsG0280007025.01.T01:exon:8378;Parent=MsG0280007025.01.T01
Chr2	exon	9547813	9548094	9547813	ID=MsG0280007025.01.T01:exon:8377;Parent=MsG0280007025.01.T01
Chr2	exon	9548743	9548981	9548743	ID=MsG0280007025.01.T01:exon:8376;Parent=MsG0280007025.01.T01
Chr2	exon	9555233	9555379	9555233	ID=MsG0280007025.01.T01:exon:8375;Parent=MsG0280007025.01.T01
Chr2	exon	9556624	9556987	9556624	ID=MsG0280007025.01.T01:exon:8374;Parent=MsG0280007025.01.T01
Chr2	five_prime_UTR	9556874	9556987	9556874	ID=MsG0280007025.01.T01:five_prime_utr;Parent=MsG0280007025.01.T01
Chr2	CDS	9556624	9556873	9556624	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9555233	9555379	9555233	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9548743	9548981	9548743	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9547813	9548094	9547813	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9546323	9546448	9546323	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9546072	9546173	9546072	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9545926	9545979	9545926	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9544631	9544690	9544631	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9544396	9544526	9544396	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9544153	9544249	9544153	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9543969	9544049	9543969	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9543709	9543789	9543709	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9542836	9542916	9542836	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9542367	9542479	9542367	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	CDS	9538253	9538757	9538253	ID=MsG0280007025.01.T01:cds;Parent=MsG0280007025.01.T01
Chr2	three_prime_UTR	9538028	9538252	9538028	ID=MsG0280007025.01.T01:three_prime_utr;Parent=MsG0280007025.01.T01

Gene Sequence

>MsG0280007025.01.T01

ATGTCTCTCCCTACAAAACGTTCTAGCGGCGCTACTTCTTCATCTTCATCTTCTCCTTCAACCTCTATGAAAAAAGCTAAATCTTCTTCAACCTTCGACGACGTCGTTTTCGACTCTTCCATGGACGACGATCTCAAACCTACCGACCTTCCTCGCGGCGGCGCCGCCTCTAATATGGCTGCTAATCTCGCTCGGAAGAAAGCTACTCCTCCTCAACCTGCTAAGAAGCTTCTCATCAAGCTCCACAAAGGCAACCCAACAGTGCCCAGTAATTTTGAAGACAAGACATGGGCAATTTTAAAGTCTGCTATATCAACAAGACATGGCAATTTAAAGTTGCTAATGTGCTATATTTTGAAAGCAACCCGACTCCTGCGACTTGGAGAAGCTTTATCAGCTTACCTTACAATTTGTACCTTTGTCTTATTTTCCAGATTAGGTGAAGCAGTGGATAGAACTCTTCTGAACCATCTGTTAAAGATGTTACTGCTCTGGGTATATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGTACATCTGAATTTTATGCCGCTGAAGGTGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGGTGCTTACTTTTCTTTATCCCCTTGGTTTCTCTATGCTTATGGATGGAAATCGTATTGAAGACCTTCAAAGAATGCACTTGCTCTTTTCTAGGGTCAATGCCCTTGAGTCATTGAGGCAGGCCATTAGTTCATACATCAGGAGAACTGGACAGGGCATTGTTATGGATGAGGAGAAAGATAAAGACATGGTTCAATCCCTTCTTGAATTTAAGGCTGCTCTTGACACAACATGGGAAGAAAGCTTTGCTAAGAATGAAGCATTCAGTAACACCATTAAAGACGCATTGAGCATCTTATCAATCTCCAACCGACCTGCAGAGTTGATTGCCAAGTTTTTGGATGATAAACTTCGTGCGGGTAATAAGGGGACTTCAGAAGAGGAATTAGAGGGCACACTTGATAAAGTCCTGGTTTTATTCAGGTTCATTCAGGGCAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCTAAAAGACTACTCTTAGGAAAGAGTGCTTCAATTGACGCGGAGAAATCCATGATCTCCAAGTTGAAGACCGAGTGTGGTAGCCAGTTCACAAACAAGCTGGAAGGAATGTTTAAGGTACTGGCCAACATATCCACCCTGGATGTCAGACTTCCTCATGAATTGAATGTTTACCAGGATATTTTTAAAGAGTTCTATCTGAGCAAATACAGTGGAAGGCGTCTCATGTGGCAAAATTCTTTAGGTCACTGTGTCCTAAAGGCAGATTTTCCAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGCTTTCAAGATATCAAGGATTCTACTGGTATCGAAGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTTCTACAAAAGATGCCAAAGGGTAGAGATGTGGAAGATTATGACTCGTTTGTTTTTAATGACACATTTACCGCCCCTCTTTACCGTATAAAGGTGAATGCAATTCAGTTGAAGGAGACAGTAGAGGAGAATACAAACACCACAGAAAGAGTTTTCCAAGATCGTCAATATCAGGTCGATGCTGCTATTGTGAGGATAATGAAAACTAGGAAAGTGCTTAGTCACACTCTTCTTATTACTGAACTCTTCCAACAGCTCAAATTTCCTATTAAACCAGCTGATTTAAAGAAAAGGATTGAAAGCCTGATTGACAGAGAATATCTGGAGAGGGACAAGAGCAATCCGCAAGTATACAATTACCTGGCATATATTGTGAATGGGAAATTCTGTAAAGACCCCGAGCTTGTTAAAGCTGAAGATTTTTTCAAACATGTTGAAGCTGGGAATGCCTCTAACGCCTTGGGCTCTCAAGTGACTCCAGTCACCGTAGACCAACTATTCGGACTTAACACACTCGGTATATCTTTGGCTCGCATTGATTTTGTGCCTAAGGGTTTAAACCCACCTCACATTCACCCTAGGGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCACGTCCAATCAAGACAACAATCGTCTCTTCACCAAAGTGCTAAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAATTGAATGTGGGATATGGCAACGCTGTTGCTATTGCTGGACTTAGCAGTCAAAACCCAGGAGTTATCACTGTTGCAAATGCTTTGTTTAAATCTGACCCGCTTATTCCGACGAGGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAA

Protein sequence

>MsG0280007025.01.T01

MSLPTKRSSGATSSSSSSPSTSMKKAKSSSTFDDVVFDSSMDDDLKPTDLPRGGAASNMAANLARKKATPPQPAKKLLIKLHKGNPTVPSNFEDKTWAILKSAISTRHGNLKLLMCYILKATRLLRLGEALSAYLTICTFVLFSRLGEAVDRTLLNHLLKMLLLWVYAESFEKPFLECTSEFYAAEGVKYMQQSDVPDYLKHVEVLTFLYPLGFSMLMDGNRIEDLQRMHLLFSRVNALESLRQAISSYIRRTGQGIVMDEEKDKDMVQSLLEFKAALDTTWEESFAKNEAFSNTIKDALSILSISNRPAELIAKFLDDKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKVLANISTLDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKRSWLSPYFSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDYDSFVFNDTFTAPLYRIKVNAIQLKETVEENTNTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKSNPQVYNYLAYIVNGKFCKDPELVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARIDFVPKGLNPPHIHPRGTEILIVLEGTLYVGFVTSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLIPTRFLPKLFKWIRA*