AlfalfaGEDB | MsG0180000762.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000762.01

KEGG: -
GO: -
PFAM: PF04654

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000762.01.T01	XP_039687726.1	98.701	154	2	0	1	154	79	232	2.49E-106	313

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000762.01.T01	B7FKT7	98.701	154	2	0	1	154	79	232	1.19e-106	313

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048917.01	MsG0180000762.01	-0.840731	7.285335e-58	1.047259e-54
MsG0080048918.01	MsG0180000762.01	-0.801430	9.036935e-49	4.314811e-46
MsG0080048919.01	MsG0180000762.01	-0.804002	2.662170e-49	1.357377e-46
MsG0080048978.01	MsG0180000762.01	-0.830159	3.436474e-55	3.591561e-52
MsG0080049053.01	MsG0180000762.01	-0.812921	3.323153e-51	2.139903e-48
MsG0080049066.01	MsG0180000762.01	-0.814687	1.356773e-51	9.165340e-49
MsG0080049133.01	MsG0180000762.01	-0.809919	1.491313e-50	8.868194e-48
MsG0180000193.01	MsG0180000762.01	-0.822927	1.823053e-53	1.547258e-50
MsG0180000194.01	MsG0180000762.01	-0.828054	1.112545e-54	1.093569e-51
MsG0180000322.01	MsG0180000762.01	-0.820618	6.235874e-53	4.958441e-50
MsG0180000352.01	MsG0180000762.01	-0.800978	1.118232e-48	5.278990e-46
MsG0180000467.01	MsG0180000762.01	-0.807331	5.324406e-50	2.957463e-47
MsG0180000676.01	MsG0180000762.01	-0.823976	1.036353e-53	9.060234e-51
MsG0180000762.01	MsG0180001111.01	-0.811428	7.036436e-51	4.354588e-48
MsG0180000762.01	MsG0180001137.01	-0.807680	4.490109e-50	2.516681e-47
MsG0180000762.01	MsG0180001264.01	0.832147	1.115615e-55	1.236173e-52
MsG0180000762.01	MsG0180001486.01	0.807303	5.398161e-50	2.996291e-47
MsG0180000762.01	MsG0180001503.01	0.803957	2.720870e-49	1.385696e-46
MsG0180000762.01	MsG0180001614.01	-0.827800	1.280925e-54	1.249571e-51
MsG0180000762.01	MsG0180002809.01	-0.840118	1.053771e-57	1.486341e-54
MsG0180000762.01	MsG0180003114.01	-0.825968	3.508683e-54	3.246949e-51
MsG0180000762.01	MsG0180003296.01	-0.830320	3.138644e-55	3.295428e-52
MsG0180000762.01	MsG0180003757.01	-0.808924	2.438344e-50	1.412044e-47
MsG0180000762.01	MsG0180003759.01	-0.855284	6.996314e-62	1.607000e-58
MsG0180000762.01	MsG0180003779.01	-0.843091	1.734381e-58	2.683685e-55
MsG0180000762.01	MsG0180003904.01	-0.810468	1.135493e-50	6.850160e-48
MsG0180000762.01	MsG0180003908.01	-0.867993	9.082834e-66	3.233350e-62
MsG0180000762.01	MsG0180003980.01	-0.823569	1.290665e-53	1.115419e-50
MsG0180000762.01	MsG0180004554.01	-0.827858	1.240001e-54	1.211904e-51
MsG0180000762.01	MsG0180004634.01	-0.846697	1.845993e-59	3.204338e-56
MsG0180000762.01	MsG0180004777.01	0.808511	2.988002e-50	1.711716e-47
MsG0180000762.01	MsG0180004859.01	0.813423	2.579243e-51	1.683691e-48
MsG0180000762.01	MsG0180004919.01	0.822875	1.874263e-53	1.588389e-50
MsG0180000762.01	MsG0180005016.01	-0.817138	3.851525e-52	2.781998e-49
MsG0180000762.01	MsG0180005127.01	0.801655	8.125970e-49	3.901896e-46
MsG0180000762.01	MsG0180005291.01	-0.859332	4.451728e-63	1.171487e-59
MsG0180000762.01	MsG0180005353.01	0.808298	3.317487e-50	1.889917e-47
MsG0180000762.01	MsG0180005431.01	-0.800575	1.351426e-48	6.314516e-46
MsG0180000762.01	MsG0180005762.01	0.809299	2.026716e-50	1.185567e-47
MsG0180000762.01	MsG0180006142.01	-0.821865	3.216556e-53	2.648707e-50
MsG0180000762.01	MsG0180006212.01	-0.815744	7.901829e-52	5.494260e-49
MsG0180000762.01	MsG0280006307.01	-0.847379	1.200141e-59	2.129146e-56
MsG0180000762.01	MsG0280006381.01	-0.801095	1.058253e-48	5.010692e-46
MsG0180000762.01	MsG0280006825.01	-0.819565	1.086294e-52	8.389253e-50
MsG0180000762.01	MsG0280007025.01	0.805692	1.180574e-49	6.287142e-47
MsG0180000762.01	MsG0280007288.01	-0.812569	3.969099e-51	2.532367e-48
MsG0180000762.01	MsG0280007649.01	-0.813420	2.582533e-51	1.685726e-48
MsG0180000762.01	MsG0280007831.01	-0.817185	3.759719e-52	2.719057e-49
MsG0180000762.01	MsG0280008913.01	-0.838537	2.710619e-57	3.641561e-54
MsG0180000762.01	MsG0280008935.01	-0.803799	2.933925e-49	1.488108e-46
MsG0180000762.01	MsG0280009167.01	0.812385	4.354412e-51	2.764702e-48
MsG0180000762.01	MsG0280010149.01	-0.832350	9.940912e-56	1.108146e-52
MsG0180000762.01	MsG0280010356.01	-0.814757	1.309159e-51	8.860106e-49
MsG0180000762.01	MsG0280010704.01	-0.822853	1.896761e-53	1.606482e-50
MsG0180000762.01	MsG0280011162.01	-0.872078	4.190580e-67	1.730112e-63
MsG0180000762.01	MsG0280011197.01	-0.816137	6.457520e-52	4.538213e-49
MsG0180000762.01	MsG0280011200.01	-0.849907	2.391821e-60	4.604701e-57
MsG0180000762.01	MsG0280011299.01	-0.818845	1.584791e-52	1.199743e-49
MsG0180000762.01	MsG0280011475.01	-0.823321	1.475099e-53	1.265865e-50
MsG0180000762.01	MsG0380011693.01	-0.808446	3.085036e-50	1.764395e-47
MsG0180000762.01	MsG0380012157.01	-0.832781	7.771775e-56	8.776027e-53
MsG0180000762.01	MsG0380012281.01	-0.848037	7.911648e-60	1.433074e-56
MsG0180000762.01	MsG0380012658.01	0.845190	4.738690e-59	7.834101e-56
MsG0180000762.01	MsG0380013128.01	-0.803649	3.152238e-49	1.592641e-46
MsG0180000762.01	MsG0380013272.01	0.800957	1.129554e-48	5.329401e-46
MsG0180000762.01	MsG0380013506.01	-0.813064	3.092426e-51	1.998981e-48
MsG0180000762.01	MsG0380014709.01	-0.811774	5.916372e-51	3.694926e-48
MsG0180000762.01	MsG0380015081.01	-0.851101	1.104965e-60	2.212004e-57
MsG0180000762.01	MsG0380015111.01	-0.876648	1.181453e-68	5.773030e-65
MsG0180000762.01	MsG0380015546.01	-0.801953	7.059623e-49	3.415577e-46
MsG0180000762.01	MsG0380015752.01	-0.854463	1.210925e-61	2.706475e-58
MsG0180000762.01	MsG0380015971.01	-0.842183	3.021514e-58	4.544348e-55
MsG0180000762.01	MsG0380016166.01	-0.827907	1.207205e-54	1.181435e-51
MsG0180000762.01	MsG0380016229.01	-0.839384	1.636316e-57	2.256150e-54
MsG0180000762.01	MsG0380016699.01	-0.810677	1.023316e-50	6.208110e-48
MsG0180000762.01	MsG0380016835.01	-0.815980	6.998838e-52	4.897589e-49
MsG0180000762.01	MsG0380016889.01	-0.800261	1.565563e-48	7.257137e-46
MsG0180000762.01	MsG0380016896.01	-0.856444	3.204847e-62	7.651318e-59
MsG0180000762.01	MsG0380016931.01	-0.805624	1.220028e-49	6.485624e-47
MsG0180000762.01	MsG0380016934.01	-0.814303	1.650000e-51	1.103159e-48
MsG0180000762.01	MsG0380016957.01	-0.819436	1.162886e-52	8.948153e-50
MsG0180000762.01	MsG0380016960.01	-0.832664	8.309426e-56	9.350783e-53
MsG0180000762.01	MsG0380017018.01	-0.846835	1.691813e-59	2.949556e-56
MsG0180000762.01	MsG0380017141.01	-0.812051	5.148792e-51	3.239543e-48
MsG0180000762.01	MsG0380017214.01	-0.857550	1.512155e-62	3.746358e-59
MsG0180000762.01	MsG0380017472.01	-0.855796	4.959059e-62	1.158683e-58
MsG0180000762.01	MsG0380017474.01	-0.856264	3.619473e-62	8.588573e-59
MsG0180000762.01	MsG0380017579.01	0.813307	2.734956e-51	1.779687e-48
MsG0180000762.01	MsG0380017895.01	-0.826291	2.940807e-54	2.746403e-51
MsG0180000762.01	MsG0380017962.01	-0.817905	2.587018e-52	1.908230e-49
MsG0180000762.01	MsG0380017966.01	-0.836506	8.991293e-57	1.135385e-53
MsG0180000762.01	MsG0380018066.01	-0.808162	3.546275e-50	2.013104e-47
MsG0180000762.01	MsG0380018072.01	-0.813525	2.449420e-51	1.603429e-48
MsG0180000762.01	MsG0480018112.01	-0.838828	2.280998e-57	3.091638e-54
MsG0180000762.01	MsG0480018463.01	-0.812486	4.138698e-51	2.634896e-48
MsG0180000762.01	MsG0480018626.01	-0.827893	1.216503e-54	1.190076e-51
MsG0180000762.01	MsG0480019183.01	-0.806119	9.601449e-50	5.169335e-47
MsG0180000762.01	MsG0480019376.01	-0.818587	1.813759e-52	1.363208e-49
MsG0180000762.01	MsG0480019861.01	-0.802107	6.564394e-49	3.188485e-46
MsG0180000762.01	MsG0480020842.01	-0.802628	5.126238e-49	2.523265e-46
MsG0180000762.01	MsG0480020938.01	-0.821297	4.351549e-53	3.526315e-50
MsG0180000762.01	MsG0480020958.01	0.825815	3.816192e-54	3.516117e-51
MsG0180000762.01	MsG0480021143.01	-0.803555	3.297274e-49	1.662031e-46
MsG0180000762.01	MsG0480021226.01	0.819632	1.048847e-52	8.114789e-50
MsG0180000762.01	MsG0480021312.01	-0.820856	5.497718e-53	4.401149e-50
MsG0180000762.01	MsG0480022201.01	-0.805271	1.446852e-49	7.621657e-47
MsG0180000762.01	MsG0480022366.01	-0.843878	1.068616e-58	1.695366e-55
MsG0180000762.01	MsG0480022466.01	-0.804955	1.684454e-49	8.802392e-47
MsG0180000762.01	MsG0480022584.01	-0.838742	2.400323e-57	3.244914e-54
MsG0180000762.01	MsG0480022665.01	-0.807110	5.930631e-50	3.275101e-47
MsG0180000762.01	MsG0480022687.01	-0.812880	3.393165e-51	2.182679e-48
MsG0180000762.01	MsG0480023067.01	0.843333	1.494928e-58	2.331520e-55
MsG0180000762.01	MsG0480023179.01	0.804501	2.095989e-49	1.082398e-46
MsG0180000762.01	MsG0480023482.01	-0.837705	4.438774e-57	5.814259e-54
MsG0180000762.01	MsG0480023483.01	-0.813871	2.055004e-51	1.357869e-48
MsG0180000762.01	MsG0480023558.01	-0.858804	6.404986e-63	1.655018e-59
MsG0180000762.01	MsG0480023749.01	-0.821104	4.820201e-53	3.885452e-50
MsG0180000762.01	MsG0480023818.01	-0.809488	1.845699e-50	1.085101e-47
MsG0180000762.01	MsG0580024054.01	-0.845921	3.003683e-59	5.084501e-56
MsG0180000762.01	MsG0580024135.01	-0.807002	6.252818e-50	3.443435e-47
MsG0180000762.01	MsG0580024140.01	-0.821743	3.432892e-53	2.816833e-50
MsG0180000762.01	MsG0580024309.01	-0.823941	1.056280e-53	9.225444e-51
MsG0180000762.01	MsG0580024571.01	-0.864038	1.620328e-64	5.016182e-61
MsG0180000762.01	MsG0580024678.01	-0.826819	2.201023e-54	2.086749e-51
MsG0180000762.01	MsG0580025034.01	-0.802104	6.572229e-49	3.192038e-46
MsG0180000762.01	MsG0580025355.01	-0.827267	1.719367e-54	1.651732e-51
MsG0180000762.01	MsG0580025480.01	-0.802420	5.657700e-49	2.770320e-46
MsG0180000762.01	MsG0580025513.01	-0.829825	4.144688e-55	4.290948e-52
MsG0180000762.01	MsG0580025663.01	-0.814865	1.239241e-51	8.411194e-49
MsG0180000762.01	MsG0580026073.01	-0.802547	5.326256e-49	2.616318e-46
MsG0180000762.01	MsG0580028982.01	-0.808395	3.163046e-50	1.806588e-47
MsG0180000762.01	MsG0580029172.01	-0.810456	1.142625e-50	6.890611e-48
MsG0180000762.01	MsG0580029177.01	-0.817202	3.726397e-52	2.696264e-49
MsG0180000762.01	MsG0580029816.01	-0.819792	9.642068e-53	7.494010e-50
MsG0180000762.01	MsG0580030237.01	-0.800614	1.327115e-48	6.206991e-46
MsG0180000762.01	MsG0680030635.01	-0.809740	1.629455e-50	9.644601e-48
MsG0180000762.01	MsG0680030686.01	-0.800725	1.259574e-48	5.907658e-46
MsG0180000762.01	MsG0680030719.01	0.807952	3.931411e-50	2.219256e-47
MsG0180000762.01	MsG0680031449.01	-0.800472	1.418538e-48	6.610598e-46
MsG0180000762.01	MsG0680032840.01	-0.839137	1.896289e-57	2.594541e-54
MsG0180000762.01	MsG0780036054.01	0.834448	2.980539e-56	3.538261e-53
MsG0180000762.01	MsG0780036507.01	0.821703	3.507367e-53	2.874809e-50
MsG0180000762.01	MsG0780036909.01	-0.835358	1.758192e-56	2.145005e-53
MsG0180000762.01	MsG0780037734.01	-0.840710	7.378435e-58	1.059916e-54
MsG0180000762.01	MsG0780039422.01	-0.836715	7.952490e-57	1.010578e-53
MsG0180000762.01	MsG0780039431.01	0.828299	9.713247e-55	9.615070e-52
MsG0180000762.01	MsG0780039593.01	0.843003	1.830501e-58	2.824515e-55
MsG0180000762.01	MsG0780039902.01	-0.800177	1.628496e-48	7.532533e-46
MsG0180000762.01	MsG0780040072.01	-0.851248	1.004045e-60	2.019866e-57
MsG0180000762.01	MsG0780040121.01	-0.809564	1.778008e-50	1.047451e-47
MsG0180000762.01	MsG0780040158.01	-0.818305	2.101292e-52	1.567107e-49
MsG0180000762.01	MsG0780040214.01	-0.805513	1.287134e-49	6.822644e-47
MsG0180000762.01	MsG0780040236.01	-0.802217	6.228642e-49	3.033952e-46
MsG0180000762.01	MsG0780040283.01	-0.834351	3.151059e-56	3.729748e-53
MsG0180000762.01	MsG0780040331.01	-0.808078	3.696094e-50	2.093389e-47
MsG0180000762.01	MsG0780040352.01	-0.853471	2.337504e-61	5.056430e-58
MsG0180000762.01	MsG0780040640.01	-0.830883	2.285205e-55	2.439406e-52
MsG0180000762.01	MsG0780040649.01	-0.806420	8.297036e-50	4.501316e-47
MsG0180000762.01	MsG0780040685.01	-0.821986	3.015729e-53	2.491730e-50
MsG0180000762.01	MsG0780040804.01	-0.837092	6.373367e-57	8.191071e-54
MsG0180000762.01	MsG0780040884.01	-0.832052	1.178089e-55	1.301899e-52
MsG0180000762.01	MsG0780040892.01	-0.802523	5.387106e-49	2.644513e-46
MsG0180000762.01	MsG0780041106.01	-0.835025	2.132985e-56	2.576083e-53
MsG0180000762.01	MsG0780041172.01	0.812782	3.565495e-51	2.287504e-48
MsG0180000762.01	MsG0780041173.01	-0.819203	1.314088e-52	1.004617e-49
MsG0180000762.01	MsG0780041226.01	0.801995	6.922097e-49	3.352628e-46
MsG0180000762.01	MsG0780041254.01	-0.803150	3.999711e-49	1.995128e-46
MsG0180000762.01	MsG0780041426.01	0.806688	7.285724e-50	3.979716e-47
MsG0180000762.01	MsG0780041620.01	-0.839084	1.957099e-57	2.673497e-54
MsG0180000762.01	MsG0780041720.01	-0.818636	1.767816e-52	1.330471e-49
MsG0180000762.01	MsG0780041783.01	-0.808619	2.833530e-50	1.627703e-47
MsG0180000762.01	MsG0780041809.01	-0.806197	9.244790e-50	4.987262e-47
MsG0180000762.01	MsG0880041908.01	-0.802304	5.978379e-49	2.918690e-46
MsG0180000762.01	MsG0880041909.01	-0.806337	8.641008e-50	4.677937e-47
MsG0180000762.01	MsG0880042500.01	-0.815763	7.825577e-52	5.443967e-49
MsG0180000762.01	MsG0880042694.01	0.818573	1.826930e-52	1.372582e-49
MsG0180000762.01	MsG0880043017.01	0.821019	5.042216e-53	4.055062e-50
MsG0180000762.01	MsG0880043148.01	-0.831561	1.557081e-55	1.695989e-52
MsG0180000762.01	MsG0880043304.01	0.814080	1.848026e-51	1.228036e-48
MsG0180000762.01	MsG0880043317.01	0.812527	4.053022e-51	2.583181e-48
MsG0180000762.01	MsG0880043786.01	0.818342	2.061039e-52	1.538767e-49
MsG0180000762.01	MsG0880044339.01	-0.844341	8.025450e-59	1.291718e-55
MsG0180000762.01	MsG0880044352.01	-0.834211	3.417914e-56	4.028300e-53
MsG0180000762.01	MsG0880044715.01	-0.836826	7.451348e-57	9.500434e-54
MsG0180000762.01	MsG0880045413.01	-0.808929	2.432299e-50	1.408697e-47
MsG0180000762.01	MsG0880045414.01	-0.818657	1.748152e-52	1.316418e-49
MsG0180000762.01	MsG0880045457.01	-0.816559	5.195682e-52	3.693731e-49
MsG0180000762.01	MsG0880045459.01	0.809651	1.703102e-50	1.005659e-47
MsG0180000762.01	MsG0880045697.01	-0.820783	5.714548e-53	4.565119e-50
MsG0180000762.01	MsG0880046040.01	-0.849194	3.780758e-60	7.112376e-57
MsG0180000762.01	MsG0880046041.01	-0.815826	7.576426e-52	5.279293e-49
MsG0180000762.01	MsG0880046104.01	-0.816713	4.799617e-52	3.426550e-49
MsG0180000762.01	MsG0880046151.01	-0.841796	3.823278e-58	5.680462e-55
MsG0180000762.01	MsG0880046252.01	-0.801535	8.603003e-49	4.118523e-46
MsG0180000762.01	MsG0880046402.01	0.813533	2.439432e-51	1.597227e-48
MsG0180000762.01	MsG0880046403.01	0.829241	5.747925e-55	5.849399e-52
MsG0180000762.01	MsG0880046876.01	-0.817041	4.051297e-52	2.918491e-49
MsG0180000762.01	MsG0880047318.01	-0.822268	2.594634e-53	2.161207e-50
MsG0180000762.01	MsG0880047493.01	0.818004	2.457930e-52	1.817991e-49
MsG0180000762.01	MsG0880047567.01	-0.811219	7.811413e-51	4.807484e-48
MsG0180000762.01	MsG0880047578.01	-0.812681	3.751226e-51	2.400433e-48
MsG0180000762.01	MsG0880047616.01	-0.825650	4.176073e-54	3.829492e-51
MsG0180000762.01	MsG0880047628.01	-0.805411	1.352310e-49	7.149501e-47
MsG0180000762.01	MsG0880047664.01	0.823768	1.159170e-53	1.007588e-50
MsG0180000762.01	MsG0880047697.01	0.811634	6.348196e-51	3.949674e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000762.01.T01	MTR_1g009030	88.961	154	2	1	1	154	79	217	1.33e-94	273
MsG0180000762.01.T01	MTR_3g109280	81.818	154	26	1	1	154	79	230	3.73e-90	262
MsG0180000762.01.T01	MTR_1g077210	72.327	159	39	2	1	154	79	237	1.44e-77	230
MsG0180000762.01.T01	MTR_0054s0080	70.130	154	46	0	1	154	79	232	2.99e-75	224
MsG0180000762.01.T01	MTR_6g066040	58.000	150	61	1	1	150	79	226	1.53e-56	177
MsG0180000762.01.T01	MTR_6g066090	53.896	154	68	1	1	154	6	156	3.51e-55	171
MsG0180000762.01.T01	MTR_7g073370	41.441	111	62	1	27	137	104	211	4.01e-21	85.9
MsG0180000762.01.T01	MTR_5g068640	31.210	157	101	2	1	151	77	232	9.51e-21	85.5
MsG0180000762.01.T01	MTR_2g014820	38.235	136	76	3	1	134	722	851	4.09e-16	74.7
MsG0180000762.01.T01	MTR_8g106520	34.074	135	84	2	1	135	21	150	1.01e-15	70.9
MsG0180000762.01.T01	MTR_8g106520	34.074	135	84	2	1	135	77	206	3.53e-15	70.5
MsG0180000762.01.T01	MTR_8g106530	36.170	94	60	0	42	135	114	207	3.61e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000762.01.T01	AT4G31330	71.069	159	39	2	1	153	79	236	1.21e-78	233
MsG0180000762.01.T01	AT5G10580	70.186	161	39	2	1	152	79	239	1.97e-75	225
MsG0180000762.01.T01	AT5G10580	71.338	157	36	2	1	148	79	235	1.10e-74	223
MsG0180000762.01.T01	AT5G10580	71.338	157	36	2	1	148	79	235	1.10e-74	223
MsG0180000762.01.T01	AT5G10580	71.028	107	23	1	1	99	79	185	1.31e-49	158
MsG0180000762.01.T01	AT5G24790	59.477	153	56	3	1	147	79	231	3.33e-49	159
MsG0180000762.01.T01	AT3G18215	33.333	135	90	0	1	135	6	140	1.36e-18	78.2
MsG0180000762.01.T01	AT3G18215	33.333	135	90	0	1	135	78	212	8.57e-18	77.4
MsG0180000762.01.T01	AT5G24600	27.439	164	105	2	1	152	77	238	2.36e-16	73.9
MsG0180000762.01.T01	AT5G24600	28.571	147	91	2	1	135	77	221	1.84e-14	68.6
MsG0180000762.01.T01	AT5G43180	33.766	154	87	3	2	140	79	232	3.62e-12	62.4

Find 23 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAATATATATTTGAAATTT+TGG	0.097168	1:+10774668	MsG0180000762.01.T01:CDS
CTGGACTTCCTTTGTTGCTT+TGG	0.242448	1:+10774736	MsG0180000762.01.T01:CDS
CCACTAAATGATGCAATATA+TGG	0.301604	1:+10774492	MsG0180000762.01.T01:CDS
CCATATATTGCATCATTTAG+TGG	0.330574	1:-10774492	None:intergenic
GAGCAAAGGAAAACCATAAC+AGG	0.393179	1:-10774768	None:intergenic
AAAATTTCAAATATATATTC+TGG	0.418167	1:-10774666	None:intergenic
TTTCCTTTGCTCTCTTGCTA+TGG	0.429928	1:+10774779	MsG0180000762.01.T01:CDS
TAAATCTTATTGCAAGAGAA+TGG	0.439278	1:-10774587	None:intergenic
AAAGATGAATGTGGATCAAA+AGG	0.472647	1:+10774848	MsG0180000762.01.T01:CDS
TTTGTGTACACTAGTGGAAA+GGG	0.482848	1:+10774825	MsG0180000762.01.T01:CDS
TGGAGCACATGGTGAATTCA+TGG	0.497913	1:+10774512	MsG0180000762.01.T01:CDS
TCTGGTGTCACAAGTGACAT+AGG	0.507387	1:-10774648	None:intergenic
ACATAGTAAAATTGAGGTTG+TGG	0.520784	1:-10774424	None:intergenic
AATGGCAAAAGAATGAGAAG+AGG	0.536492	1:-10774569	None:intergenic
ACCTGAACATAGTAAAATTG+AGG	0.548897	1:-10774430	None:intergenic
AAATCAAGATTGTAAAGCAC+AGG	0.577484	1:-10774804	None:intergenic
GATGAATGTGGATCAAAAGG+AGG	0.581198	1:+10774851	MsG0180000762.01.T01:CDS
GAACCATAGCAAGAGAGCAA+AGG	0.582292	1:-10774782	None:intergenic
CTGGTGTCACAAGTGACATA+GGG	0.583728	1:-10774647	None:intergenic
ATGAGAAGAGGAAAATTGTG+AGG	0.605718	1:-10774557	None:intergenic
ACAAGTGACATAGGGTCTTG+AGG	0.610415	1:-10774639	None:intergenic
TGGAAAGGGAAAGATGAATG+TGG	0.637565	1:+10774839	MsG0180000762.01.T01:CDS
GATGCAATATATGGAGCACA+TGG	0.696776	1:+10774501	MsG0180000762.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATTTCAAATATATATTC+TGG	-	Chr1:10774669-10774688	None:intergenic	10.0%
!!!	AGAATATATATTTGAAATTT+TGG	+	Chr1:10774668-10774687	MsG0180000762.01.T01:CDS	10.0%
!!!	ATATTTGAAATTTTGGAGAA+AGG	+	Chr1:10774675-10774694	MsG0180000762.01.T01:CDS	20.0%
!	TAAATCTTATTGCAAGAGAA+TGG	-	Chr1:10774590-10774609	None:intergenic	25.0%
	AAAGATGAATGTGGATCAAA+AGG	+	Chr1:10774848-10774867	MsG0180000762.01.T01:CDS	30.0%
	AAATCAAGATTGTAAAGCAC+AGG	-	Chr1:10774807-10774826	None:intergenic	30.0%
	ACATAGTAAAATTGAGGTTG+TGG	-	Chr1:10774427-10774446	None:intergenic	30.0%
	ACCTGAACATAGTAAAATTG+AGG	-	Chr1:10774433-10774452	None:intergenic	30.0%
	CCACTAAATGATGCAATATA+TGG	+	Chr1:10774492-10774511	MsG0180000762.01.T01:CDS	30.0%
	CCATATATTGCATCATTTAG+TGG	-	Chr1:10774495-10774514	None:intergenic	30.0%
!	ACCTCAATTTTACTATGTTC+AGG	+	Chr1:10774429-10774448	MsG0180000762.01.T01:CDS	30.0%
!	TTTTGAATGCTGTTGGAAAT+AGG	+	Chr1:10774703-10774722	MsG0180000762.01.T01:CDS	30.0%
	AATGGCAAAAGAATGAGAAG+AGG	-	Chr1:10774572-10774591	None:intergenic	35.0%
	ATGAGAAGAGGAAAATTGTG+AGG	-	Chr1:10774560-10774579	None:intergenic	35.0%
	CCAAAAATCCAAAGCAACAA+AGG	-	Chr1:10774747-10774766	None:intergenic	35.0%
	TTTGTGTACACTAGTGGAAA+GGG	+	Chr1:10774825-10774844	MsG0180000762.01.T01:CDS	35.0%
!	CTTGATTTTGTGTACACTAG+TGG	+	Chr1:10774819-10774838	MsG0180000762.01.T01:CDS	35.0%
!	GGTTTCATTTTGAATGCTGT+TGG	+	Chr1:10774696-10774715	MsG0180000762.01.T01:CDS	35.0%
!	TTTTGTGTACACTAGTGGAA+AGG	+	Chr1:10774824-10774843	MsG0180000762.01.T01:CDS	35.0%
!!!	CCTTTGTTGCTTTGGATTTT+TGG	+	Chr1:10774744-10774763	MsG0180000762.01.T01:CDS	35.0%
!!!	TTGGATTTTTGGTCCTGTTA+TGG	+	Chr1:10774755-10774774	MsG0180000762.01.T01:CDS	35.0%
	GAGCAAAGGAAAACCATAAC+AGG	-	Chr1:10774771-10774790	None:intergenic	40.0%
	GATGAATGTGGATCAAAAGG+AGG	+	Chr1:10774851-10774870	MsG0180000762.01.T01:CDS	40.0%
	GATGCAATATATGGAGCACA+TGG	+	Chr1:10774501-10774520	MsG0180000762.01.T01:CDS	40.0%
	TGGAAAGGGAAAGATGAATG+TGG	+	Chr1:10774839-10774858	MsG0180000762.01.T01:CDS	40.0%
	TTTCCTTTGCTCTCTTGCTA+TGG	+	Chr1:10774779-10774798	MsG0180000762.01.T01:CDS	40.0%
!	GGAAATAGGCTTTTCTATGC+TGG	+	Chr1:10774717-10774736	MsG0180000762.01.T01:CDS	40.0%
	ACAAGTGACATAGGGTCTTG+AGG	-	Chr1:10774642-10774661	None:intergenic	45.0%
	GAACCATAGCAAGAGAGCAA+AGG	-	Chr1:10774785-10774804	None:intergenic	45.0%
	TGGAGCACATGGTGAATTCA+TGG	+	Chr1:10774512-10774531	MsG0180000762.01.T01:CDS	45.0%
!	CTGGACTTCCTTTGTTGCTT+TGG	+	Chr1:10774736-10774755	MsG0180000762.01.T01:CDS	45.0%
!!	CTGGTGTCACAAGTGACATA+GGG	-	Chr1:10774650-10774669	None:intergenic	45.0%
!!	TCTGGTGTCACAAGTGACAT+AGG	-	Chr1:10774651-10774670	None:intergenic	45.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	10774420	10774884	10774420	ID=MsG0180000762.01;Name=MsG0180000762.01
Chr1	mRNA	10774420	10774884	10774420	ID=MsG0180000762.01.T01;Parent=MsG0180000762.01;Name=MsG0180000762.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|154
Chr1	exon	10774420	10774884	10774420	ID=MsG0180000762.01.T01:exon:26009;Parent=MsG0180000762.01.T01
Chr1	CDS	10774420	10774884	10774420	ID=MsG0180000762.01.T01:cds;Parent=MsG0180000762.01.T01

Gene Sequence

>MsG0180000762.01.T01

ATGGCCACAACCTCAATTTTACTATGTTCAGGTCTAGCAGCAGTTATAAGCAGCACATATAGTGTGAAGAAACCACTAAATGATGCAATATATGGAGCACATGGTGAATTCATGGTTGCACTAAAATACGTGTCACTCCTCACAATTTTCCTCTTCTCATTCTTTTGCCATTCTCTTGCAATAAGATTTATTAATCAAGTGAACATTTTAATCAATACTCCTCAAGACCCTATGTCACTTGTGACACCAGAATATATATTTGAAATTTTGGAGAAAGGTTTCATTTTGAATGCTGTTGGAAATAGGCTTTTCTATGCTGGACTTCCTTTGTTGCTTTGGATTTTTGGTCCTGTTATGGTTTTCCTTTGCTCTCTTGCTATGGTTCCTGTGCTTTACAATCTTGATTTTGTGTACACTAGTGGAAAGGGAAAGATGAATGTGGATCAAAAGGAGGATTATGTTTGA

Protein sequence

>MsG0180000762.01.T01

MATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVSLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPLLLWIFGPVMVFLCSLAMVPVLYNLDFVYTSGKGKMNVDQKEDYV*