AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017579.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017579.01.T01 MTR_3g109310 88.779 303 26 3 1 303 1 295 0.0 543
MsG0380017579.01.T01 MTR_1g008990 57.191 299 102 12 21 303 51 339 3.38e-84 257
MsG0380017579.01.T01 MTR_1g008990 62.121 198 57 6 21 203 51 245 6.47e-59 189
MsG0380017579.01.T01 MTR_3g110010 81.746 126 23 0 133 258 633 758 2.49e-55 191
MsG0380017579.01.T01 MTR_3g109982 80.952 126 24 0 133 258 649 774 7.19e-55 190
MsG0380017579.01.T01 MTR_1g080920 49.306 144 66 4 99 239 177 316 2.76e-23 99.4
MsG0380017579.01.T01 MTR_7g115120 50.725 138 61 3 79 216 150 280 3.19e-22 95.9
MsG0380017579.01.T01 MTR_7g115140 41.322 121 69 1 81 201 88 206 2.62e-18 82.0
MsG0380017579.01.T01 MTR_1g022495 32.203 118 80 0 101 218 2 119 5.64e-13 66.2
MsG0380017579.01.T01 MTR_4g070860 35.484 93 60 0 116 208 17 109 3.77e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017579.01.T01 AT5G24800 45.148 237 102 9 74 303 62 277 3.34e-45 155
MsG0380017579.01.T01 AT5G28770 48.905 137 64 3 103 239 122 252 1.60e-20 90.1
MsG0380017579.01.T01 AT5G28770 48.905 137 64 3 103 239 129 259 1.64e-20 90.1
MsG0380017579.01.T01 AT5G28770 53.000 100 45 1 103 202 129 226 2.02e-16 77.8
MsG0380017579.01.T01 AT4G02640 47.917 96 47 1 127 222 221 313 1.46e-13 70.9
MsG0380017579.01.T01 AT4G02640 47.917 96 47 1 127 222 221 313 1.49e-13 70.9
MsG0380017579.01.T01 AT4G02640 47.917 96 47 1 127 222 215 307 1.71e-13 70.9
MsG0380017579.01.T01 AT4G02640 47.917 96 47 1 127 222 215 307 1.78e-13 70.9
MsG0380017579.01.T01 AT3G54620 46.429 84 45 0 127 210 229 312 3.57e-11 63.9

Find 77 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCTCAGCCATCTATTTA+TGG 0.124761 3:+98070009 MsG0380017579.01.T01:CDS
TAAATATTTGGCCTTAATTA+AGG 0.134054 3:+98071127 MsG0380017579.01.T01:exon
TTTGGTTTATTAGCTGAAAC+TGG 0.195300 3:-98070142 None:intergenic
AGTGGTGAGAATAGAGAAAA+TGG 0.221718 3:-98066945 None:intergenic
GTTGAACGTTTCGTATAAAA+AGG 0.228090 3:+98071246 MsG0380017579.01.T01:three_prime_UTR
TTTGACAGAAATACCTTCTA+TGG 0.244115 3:-98070276 None:intergenic
CTATGAGTTGTGTAAATATT+TGG 0.245467 3:+98071115 MsG0380017579.01.T01:CDS
ATATTATTCTCTTTGTTGTT+TGG 0.273240 3:-98070160 None:intergenic
AGTTTACCGGTAGGAGAGTT+TGG 0.295352 3:-98067111 None:intergenic
AATTCGAATCTTGCTGGGTT+TGG 0.309808 3:+98071039 MsG0380017579.01.T01:CDS
TCTTGCTGGGTTTGGAAACT+TGG 0.316743 3:+98071047 MsG0380017579.01.T01:CDS
GTGCACAATTCGAATCTTGC+TGG 0.321584 3:+98071033 MsG0380017579.01.T01:CDS
TCAAGTGAAACCCTTAATTA+AGG 0.326188 3:-98071138 None:intergenic
AACACTATACAAACAGTTTA+CGG 0.339230 3:+98070645 MsG0380017579.01.T01:CDS
AAATATTTGGCCTTAATTAA+GGG 0.379075 3:+98071128 MsG0380017579.01.T01:exon
AGCACTGATGGTGGAATGTT+TGG 0.379902 3:-98069980 None:intergenic
AATGTTTGGGAGTGAAGTTT+TGG 0.394976 3:-98069966 None:intergenic
CTCTCTTCTCCGGCGAGCGA+TGG 0.398900 3:+98066979 MsG0380017579.01.T01:exon
ATTTCCCTGCAGGACATTGA+TGG 0.400011 3:-98070977 None:intergenic
ATGTGGCATGCGGCGAATAC+TGG 0.408973 3:-98070944 None:intergenic
TGAATCTCGATTACGAGTTT+CGG 0.410788 3:+98067032 MsG0380017579.01.T01:CDS
AGAATAGAGAAAATGGGAAA+AGG 0.412399 3:-98066938 None:intergenic
GAATAGAGAAAATGGGAAAA+GGG 0.416725 3:-98066937 None:intergenic
ACAATGATGTCGTCGACAAT+GGG 0.419225 3:+98071079 MsG0380017579.01.T01:CDS
TTGATATGAAACGCCATAGA+AGG 0.425277 3:+98070263 MsG0380017579.01.T01:CDS
GGTGAAGTTAGCTGAGGATA+TGG 0.427027 3:+98070831 MsG0380017579.01.T01:intron
TTTGTCTGAACTTGAGTCTC+AGG 0.431765 3:+98070432 MsG0380017579.01.T01:CDS
AACCGCAACACCACCGTATG+AGG 0.448822 3:-98071007 None:intergenic
TCCGACGAGGATAATGAATC+AGG 0.453955 3:+98070214 MsG0380017579.01.T01:CDS
GTATCCAAGTCTTGCCGATA+CGG 0.463283 3:+98067054 MsG0380017579.01.T01:CDS
CAGCCATCTATTTATGGCAC+TGG 0.467277 3:+98070015 MsG0380017579.01.T01:CDS
GCCAACCATCAATGTCCTGC+AGG 0.476677 3:+98070972 MsG0380017579.01.T01:CDS
ATACCAGTGCCATAAATAGA+TGG 0.477311 3:-98070018 None:intergenic
TGCACAATTCGAATCTTGCT+GGG 0.484135 3:+98071034 MsG0380017579.01.T01:CDS
ACAAAGAGAATAATATCAAA+GGG 0.493368 3:+98070167 MsG0380017579.01.T01:CDS
CACAACTCATAGCATTGCTT+AGG 0.501122 3:-98071104 None:intergenic
TACAATGATGTCGTCGACAA+TGG 0.501669 3:+98071078 MsG0380017579.01.T01:CDS
CCCTGCAGGACATTGATGGT+TGG 0.501779 3:-98070973 None:intergenic
GTGGTGAGAATAGAGAAAAT+GGG 0.519514 3:-98066944 None:intergenic
CGCTTTCCAAACTCTCCTAC+CGG 0.524112 3:+98067105 MsG0380017579.01.T01:CDS
GCCTCCGTATCGGCAAGACT+TGG 0.526307 3:-98067058 None:intergenic
TTGTCGACGACATCATTGTA+AGG 0.529396 3:-98071075 None:intergenic
AAGAGAGAAAACTTAAACAG+TGG 0.530559 3:-98066963 None:intergenic
CCGTTGTTGCCATCGCTCGC+CGG 0.532690 3:-98066988 None:intergenic
TTGGTTTATTAGCTGAAACT+GGG 0.535446 3:-98070141 None:intergenic
AGGCACTATTATTTCCCTGC+AGG 0.536074 3:-98070987 None:intergenic
GCACTGATGGTGGAATGTTT+GGG 0.539183 3:-98069979 None:intergenic
TGTAGAAGCTTTGAGAGCTA+AGG 0.540256 3:+98070723 MsG0380017579.01.T01:CDS
AACAAAGAGAATAATATCAA+AGG 0.546304 3:+98070166 MsG0380017579.01.T01:CDS
GGAAATAATAGTGCCTCATA+CGG 0.548614 3:+98070994 MsG0380017579.01.T01:CDS
GATACGGAGGCATTCATGAC+CGG 0.550151 3:+98067070 MsG0380017579.01.T01:CDS
ACCTGATTCATTATCCTCGT+CGG 0.562154 3:-98070215 None:intergenic
AGAATCAATAGTAGCACTGA+TGG 0.570342 3:-98069992 None:intergenic
GCGAGTCAGCCAAGAGGTCA+AGG 0.571020 3:+98070392 MsG0380017579.01.T01:CDS
AAACTGATTGTTTAGTGATG+TGG 0.571542 3:-98070872 None:intergenic
CCGGCGAGCGATGGCAACAA+CGG 0.577221 3:+98066988 MsG0380017579.01.T01:exon
ATCAATAGTAGCACTGATGG+TGG 0.581341 3:-98069989 None:intergenic
GATTCATTATCCTCGTCGGA+TGG 0.582930 3:-98070211 None:intergenic
GAAAGCGGCGGAGCAAACTC+CGG 0.584176 3:-98067089 None:intergenic
GGTCATGAATGCCTCCGTAT+CGG 0.589824 3:-98067068 None:intergenic
TCATACGGTGGTGTTGCGGT+TGG 0.590129 3:+98071009 MsG0380017579.01.T01:CDS
AATATCAAAGGGACATCAAG+TGG 0.598499 3:+98070178 MsG0380017579.01.T01:CDS
TACTATTCAACAATTTCATG+AGG 0.600013 3:+98070669 MsG0380017579.01.T01:CDS
TGCCTCATACGGTGGTGTTG+CGG 0.602335 3:+98071005 MsG0380017579.01.T01:CDS
AATAATAGTGCCTCATACGG+TGG 0.620063 3:+98070997 MsG0380017579.01.T01:CDS
TCCAAGTCTTGCCGATACGG+AGG 0.642233 3:+98067057 MsG0380017579.01.T01:CDS
CCAACCATCAATGTCCTGCA+GGG 0.644784 3:+98070973 MsG0380017579.01.T01:CDS
TAGGAGAGTTTGGAAAGCGG+CGG 0.671217 3:-98067101 None:intergenic
ATAATAGGTGAAGTTAGCTG+AGG 0.671237 3:+98070825 MsG0380017579.01.T01:intron
AGTCAGCCAAGAGGTCAAGG+TGG 0.684615 3:+98070395 MsG0380017579.01.T01:CDS
CGGTAGGAGAGTTTGGAAAG+CGG 0.687279 3:-98067104 None:intergenic
CTGGTAGTCATGTTGAGTTG+TGG 0.702154 3:-98070925 None:intergenic
TTCATCTGATCCATCCGACG+AGG 0.710432 3:+98070201 MsG0380017579.01.T01:CDS
CTAATTGCGAGTCAGCCAAG+AGG 0.711883 3:+98070386 MsG0380017579.01.T01:CDS
TTGGCGAAACATGTGGCATG+CGG 0.727060 3:-98070954 None:intergenic
CAATGATGTCGTCGACAATG+GGG 0.731606 3:+98071080 MsG0380017579.01.T01:CDS
TTGATGGTTGGCGAAACATG+TGG 0.736785 3:-98070961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAAAAATGTTTG+TGG + Chr3:98067573-98067592 MsG0380017579.01.T01:intron 10.0%
!! GTTAAATTTCAAAATAAAAA+AGG + Chr3:98068418-98068437 MsG0380017579.01.T01:intron 10.0%
!! AATATAACAATTGTTATGAA+GGG + Chr3:98068349-98068368 MsG0380017579.01.T01:intron 15.0%
!! ACAAATAGAGTTAAATTTAT+AGG - Chr3:98067357-98067376 None:intergenic 15.0%
!! ATAAAGGAAAATGAATTTAT+TGG + Chr3:98068089-98068108 MsG0380017579.01.T01:intron 15.0%
!! CTAAAATAAATTCTTCTTAA+GGG - Chr3:98069842-98069861 None:intergenic 15.0%
!! TATTAGTAGTATAATATTAG+TGG + Chr3:98067883-98067902 MsG0380017579.01.T01:intron 15.0%
!! TTAATATAATTAATCTCGTT+AGG + Chr3:98068829-98068848 MsG0380017579.01.T01:intron 15.0%
!! TTTACATATGCTATTATAAT+AGG + Chr3:98070810-98070829 MsG0380017579.01.T01:intron 15.0%
!!! GAATTTCATTTTTTTTTTGA+GGG - Chr3:98069008-98069027 None:intergenic 15.0%
!!! TCTAAAACTTATAAATTGAT+TGG - Chr3:98068170-98068189 None:intergenic 15.0%
!!! TCTAAAATAAATTCTTCTTA+AGG - Chr3:98069843-98069862 None:intergenic 15.0%
!!! TCTTGTTTCTTTTTTTTTTT+TGG - Chr3:98068877-98068896 None:intergenic 15.0%
!!! TGAATTTCATTTTTTTTTTG+AGG - Chr3:98069009-98069028 None:intergenic 15.0%
!!! TTTTATTTTATTTGAAGACA+TGG - Chr3:98067312-98067331 None:intergenic 15.0%
!!! TTTTTTTTTAAGAAATGAAG+AGG + Chr3:98069365-98069384 MsG0380017579.01.T01:intron 15.0%
!! AAAAACTATAAACTACTAGT+AGG + Chr3:98069135-98069154 MsG0380017579.01.T01:intron 20.0%
!! AAAACTATAAACTACTAGTA+GGG + Chr3:98069136-98069155 MsG0380017579.01.T01:intron 20.0%
!! AAAGAATATTAATCTTGTGT+AGG - Chr3:98067921-98067940 None:intergenic 20.0%
!! AACAAAAAATACTATATGGT+TGG + Chr3:98069605-98069624 MsG0380017579.01.T01:intron 20.0%
!! AACAAAGAGAATAATATCAA+AGG + Chr3:98070166-98070185 MsG0380017579.01.T01:CDS 20.0%
!! ACAAAGAGAATAATATCAAA+GGG + Chr3:98070167-98070186 MsG0380017579.01.T01:CDS 20.0%
!! AGATTAATATTCTTTGCATT+CGG + Chr3:98067926-98067945 MsG0380017579.01.T01:intron 20.0%
!! ATATAACAATTGTTATGAAG+GGG + Chr3:98068350-98068369 MsG0380017579.01.T01:intron 20.0%
!! CAACAACAAAAAATACTATA+TGG + Chr3:98069601-98069620 MsG0380017579.01.T01:intron 20.0%
!! GAATATAACAATTGTTATGA+AGG + Chr3:98068348-98068367 MsG0380017579.01.T01:intron 20.0%
!!! AAACTTTAAAAGATACTACA+TGG + Chr3:98069572-98069591 MsG0380017579.01.T01:intron 20.0%
!!! AAATATTTGGCCTTAATTAA+GGG + Chr3:98071128-98071147 MsG0380017579.01.T01:exon 20.0%
!!! AAATTAATAGTTTTACACTG+TGG - Chr3:98069066-98069085 None:intergenic 20.0%
!!! AATCAAATACATCAGTTTTT+TGG + Chr3:98067493-98067512 MsG0380017579.01.T01:intron 20.0%
!!! AATTTAGTTTCTGAAATTGT+AGG + Chr3:98070482-98070501 MsG0380017579.01.T01:intron 20.0%
!!! ATATTATTCTCTTTGTTGTT+TGG - Chr3:98070163-98070182 None:intergenic 20.0%
!!! CATATAGTATTTTTTGTTGT+TGG - Chr3:98069603-98069622 None:intergenic 20.0%
!!! GATTCTTATTCAAATTTTTG+AGG - Chr3:98069194-98069213 None:intergenic 20.0%
!!! GTTGTTTTTTTTAAAGCAAA+CGG + Chr3:98068686-98068705 MsG0380017579.01.T01:intron 20.0%
!!! TAAATATTTGGCCTTAATTA+AGG + Chr3:98071127-98071146 MsG0380017579.01.T01:exon 20.0%
!!! TACTAGGTTTATCATTTTTT+TGG + Chr3:98068779-98068798 MsG0380017579.01.T01:intron 20.0%
!!! TTAATAGAGAAAGTTTTACA+CGG + Chr3:98068916-98068935 MsG0380017579.01.T01:intron 20.0%
!!! TTAGTGTCTTATTATTTACT+AGG + Chr3:98068763-98068782 MsG0380017579.01.T01:intron 20.0%
!!! TTGTTTTTTTTAAAGCAAAC+GGG + Chr3:98068687-98068706 MsG0380017579.01.T01:intron 20.0%
! AAAAATGTTTGTGGACATAT+TGG + Chr3:98067582-98067601 MsG0380017579.01.T01:intron 25.0%
! AAAATGTTTGTGGACATATT+GGG + Chr3:98067583-98067602 MsG0380017579.01.T01:intron 25.0%
! AACACTATACAAACAGTTTA+CGG + Chr3:98070645-98070664 MsG0380017579.01.T01:CDS 25.0%
! ACAACACTTCTTATTATATG+TGG + Chr3:98070315-98070334 MsG0380017579.01.T01:intron 25.0%
! ACTCTATTTGTTTAGTAAGT+TGG + Chr3:98067366-98067385 MsG0380017579.01.T01:intron 25.0%
! AGTAGTATAATATTAGTGGT+GGG + Chr3:98067887-98067906 MsG0380017579.01.T01:intron 25.0%
! ATGACTCTTCAAATGAATAA+AGG + Chr3:98068073-98068092 MsG0380017579.01.T01:intron 25.0%
! ATTGAGATATATGAGAGAAA+GGG + Chr3:98067529-98067548 MsG0380017579.01.T01:intron 25.0%
! CAATTCTTCAAATGTAACTT+AGG - Chr3:98068213-98068232 None:intergenic 25.0%
! CTATGAGTTGTGTAAATATT+TGG + Chr3:98071115-98071134 MsG0380017579.01.T01:CDS 25.0%
! CTCAACTTGAAAAATGTATA+TGG + Chr3:98069549-98069568 MsG0380017579.01.T01:intron 25.0%
! TACTATGAATTGAAGACATT+GGG - Chr3:98067819-98067838 None:intergenic 25.0%
! TACTATTCAACAATTTCATG+AGG + Chr3:98070669-98070688 MsG0380017579.01.T01:CDS 25.0%
! TAGTAGTATAATATTAGTGG+TGG + Chr3:98067886-98067905 MsG0380017579.01.T01:intron 25.0%
! TATAACAATTGTTATGAAGG+GGG + Chr3:98068351-98068370 MsG0380017579.01.T01:intron 25.0%
! TCTCAATTTCATTTGATAGA+TGG - Chr3:98069221-98069240 None:intergenic 25.0%
! TTAATCAACGTTTATATCTC+TGG + Chr3:98068127-98068146 MsG0380017579.01.T01:intron 25.0%
! TTATTCATTTGAAGAGTCAT+GGG - Chr3:98068073-98068092 None:intergenic 25.0%
! TTTATTCATTTGAAGAGTCA+TGG - Chr3:98068074-98068093 None:intergenic 25.0%
!! ATACATGTAGTTTGACATTT+TGG + Chr3:98070090-98070109 MsG0380017579.01.T01:intron 25.0%
!! ATTTTGGATTGAATTGCATA+TGG + Chr3:98070106-98070125 MsG0380017579.01.T01:intron 25.0%
!! CGAAATTAATATAAAGGTAC+AGG + Chr3:98069162-98069181 MsG0380017579.01.T01:intron 25.0%
!!! AAGTTTGTTCTTGTTATTTC+CGG - Chr3:98067271-98067290 None:intergenic 25.0%
!!! AGTTTTTTGGCTGATAATTT+GGG + Chr3:98067506-98067525 MsG0380017579.01.T01:intron 25.0%
!!! ATACATTTTTCAAGTTGAGT+TGG - Chr3:98069548-98069567 None:intergenic 25.0%
!!! GGGTATCGAAATTAATATAA+AGG + Chr3:98069156-98069175 MsG0380017579.01.T01:intron 25.0%
!!! TATTCAAATTTTTGAGGTCT+TGG - Chr3:98069188-98069207 None:intergenic 25.0%
AAACTGATTGTTTAGTGATG+TGG - Chr3:98070875-98070894 None:intergenic 30.0%
AAATGTTTGTGGACATATTG+GGG + Chr3:98067584-98067603 MsG0380017579.01.T01:intron 30.0%
AAGAGAGAAAACTTAAACAG+TGG - Chr3:98066966-98066985 None:intergenic 30.0%
AATGTCAAACTACATGTATG+AGG - Chr3:98070089-98070108 None:intergenic 30.0%
ACTATGAATTGAAGACATTG+GGG - Chr3:98067818-98067837 None:intergenic 30.0%
AGAAATCAAGACAAGATTCT+TGG - Chr3:98067853-98067872 None:intergenic 30.0%
AGAATAGAGAAAATGGGAAA+AGG - Chr3:98066941-98066960 None:intergenic 30.0%
AGCAAGACAGCATTAAAAAA+AGG - Chr3:98067777-98067796 None:intergenic 30.0%
ATATTTGTACGACTATAGCT+TGG - Chr3:98068021-98068040 None:intergenic 30.0%
ATCACTTCATCAAATCACAT+AGG - Chr3:98069766-98069785 None:intergenic 30.0%
ATTATATAACCATTCTCTCG+TGG - Chr3:98068278-98068297 None:intergenic 30.0%
GAATAGAGAAAATGGGAAAA+GGG - Chr3:98066940-98066959 None:intergenic 30.0%
GATCAATTATGTGTAATCGT+TGG - Chr3:98069044-98069063 None:intergenic 30.0%
GATTGAGATATATGAGAGAA+AGG + Chr3:98067528-98067547 MsG0380017579.01.T01:intron 30.0%
GCTCACAAAAAATCTTCATA+AGG - Chr3:98067680-98067699 None:intergenic 30.0%
GTACTATGAATTGAAGACAT+TGG - Chr3:98067820-98067839 None:intergenic 30.0%
GTTGAACGTTTCGTATAAAA+AGG + Chr3:98071246-98071265 MsG0380017579.01.T01:three_prime_UTR 30.0%
TATAGAGACAGATTGTAAGA+CGG + Chr3:98069487-98069506 MsG0380017579.01.T01:intron 30.0%
TCAAGTGAAACCCTTAATTA+AGG - Chr3:98071141-98071160 None:intergenic 30.0%
TGATATAATGATTCGTGACT+TGG + Chr3:98070349-98070368 MsG0380017579.01.T01:intron 30.0%
TGGGAGATCAAAATTCAAAT+GGG - Chr3:98070598-98070617 None:intergenic 30.0%
TTGAACGAAAACCTAAAGTA+GGG + Chr3:98067641-98067660 MsG0380017579.01.T01:intron 30.0%
TTGGTTTATTAGCTGAAACT+GGG - Chr3:98070144-98070163 None:intergenic 30.0%
TTTGACAGAAATACCTTCTA+TGG - Chr3:98070279-98070298 None:intergenic 30.0%
! CAGGTAACTAATCAATGTTT+TGG + Chr3:98070451-98070470 MsG0380017579.01.T01:intron 30.0%
! TTTGGTTTATTAGCTGAAAC+TGG - Chr3:98070145-98070164 None:intergenic 30.0%
!! GCTTTAAAAAAAACAACGAC+CGG - Chr3:98068683-98068702 None:intergenic 30.0%
!! TAGTTTCTGAAATTGTAGGT+AGG + Chr3:98070486-98070505 MsG0380017579.01.T01:intron 30.0%
!! TTTAAGTTTTCTCTCTTCTC+CGG + Chr3:98066969-98066988 MsG0380017579.01.T01:five_prime_UTR 30.0%
!!! CAGTTTTTTGGCTGATAATT+TGG + Chr3:98067505-98067524 MsG0380017579.01.T01:intron 30.0%
!!! TTTTTTGTGAGCAAAAGACT+TGG + Chr3:98067688-98067707 MsG0380017579.01.T01:intron 30.0%
AAAAATGATCCACGAGAGAA+TGG + Chr3:98068266-98068285 MsG0380017579.01.T01:intron 35.0%
AAAACCTAAAGTAGGGATGT+GGG + Chr3:98067648-98067667 MsG0380017579.01.T01:intron 35.0%
AATATCAAAGGGACATCAAG+TGG + Chr3:98070178-98070197 MsG0380017579.01.T01:CDS 35.0%
ACATATTGGGGAGTTAAAAG+AGG + Chr3:98067596-98067615 MsG0380017579.01.T01:intron 35.0%
ACTTTGTAACATCCATGTGA+AGG + Chr3:98069786-98069805 MsG0380017579.01.T01:intron 35.0%
AGAAAGAGAGAAGAGTTTAC+CGG - Chr3:98067127-98067146 None:intergenic 35.0%
AGTGGTGAGAATAGAGAAAA+TGG - Chr3:98066948-98066967 None:intergenic 35.0%
ATAATAGGTGAAGTTAGCTG+AGG + Chr3:98070825-98070844 MsG0380017579.01.T01:intron 35.0%
ATACCAGTGCCATAAATAGA+TGG - Chr3:98070021-98070040 None:intergenic 35.0%
ATACTTCAAGTCTCAAGACT+AGG + Chr3:98069096-98069115 MsG0380017579.01.T01:intron 35.0%
ATATTGGGGAGTTAAAAGAG+GGG + Chr3:98067598-98067617 MsG0380017579.01.T01:intron 35.0%
CATATTGGGGAGTTAAAAGA+GGG + Chr3:98067597-98067616 MsG0380017579.01.T01:intron 35.0%
CCTGCTATTCAATCATGAAA+AGG - Chr3:98069903-98069922 None:intergenic 35.0%
CTATGAATTGAAGACATTGG+GGG - Chr3:98067817-98067836 None:intergenic 35.0%
CTGGGAGATCAAAATTCAAA+TGG - Chr3:98070599-98070618 None:intergenic 35.0%
CTTTGTAACATCCATGTGAA+GGG + Chr3:98069787-98069806 MsG0380017579.01.T01:intron 35.0%
GATTCTCAGCCATCTATTTA+TGG + Chr3:98070009-98070028 MsG0380017579.01.T01:CDS 35.0%
GGAAATAATAGTGCCTCATA+CGG + Chr3:98070994-98071013 MsG0380017579.01.T01:CDS 35.0%
GTGGTGAGAATAGAGAAAAT+GGG - Chr3:98066947-98066966 None:intergenic 35.0%
GTTGAACGAAAACCTAAAGT+AGG + Chr3:98067640-98067659 MsG0380017579.01.T01:intron 35.0%
TAAAAGAGGGGAAGTGAAAA+AGG + Chr3:98067610-98067629 MsG0380017579.01.T01:intron 35.0%
TATGAATTGAAGACATTGGG+GGG - Chr3:98067816-98067835 None:intergenic 35.0%
TGAATCTCGATTACGAGTTT+CGG + Chr3:98067032-98067051 MsG0380017579.01.T01:CDS 35.0%
TGAGCACATCATTTATGTAG+AGG + Chr3:98069639-98069658 MsG0380017579.01.T01:intron 35.0%
TTGATATGAAACGCCATAGA+AGG + Chr3:98070263-98070282 MsG0380017579.01.T01:CDS 35.0%
! AATGTTTGGGAGTGAAGTTT+TGG - Chr3:98069969-98069988 None:intergenic 35.0%
! AGAATCAATAGTAGCACTGA+TGG - Chr3:98069995-98070014 None:intergenic 35.0%
! AGTTCATTTTCAACTTGTGG+TGG + Chr3:98069931-98069950 MsG0380017579.01.T01:CDS 35.0%
! ATGTTTGGGAGTGAAGTTTT+GGG - Chr3:98069968-98069987 None:intergenic 35.0%
! CCTTTTCATGATTGAATAGC+AGG + Chr3:98069900-98069919 MsG0380017579.01.T01:intron 35.0%
! GTGAGTTCATTTTCAACTTG+TGG + Chr3:98069928-98069947 MsG0380017579.01.T01:CDS 35.0%
! TAGAGAAAGTTTTACACGGT+CGG + Chr3:98068920-98068939 MsG0380017579.01.T01:intron 35.0%
! TTTGAGACAATTTCTCATGC+AGG + Chr3:98069404-98069423 MsG0380017579.01.T01:intron 35.0%
!! AGCAGACTCTTTTTCATTTG+AGG - Chr3:98068047-98068066 None:intergenic 35.0%
!! ATTTATGGCACTGGTATGTA+TGG + Chr3:98070024-98070043 MsG0380017579.01.T01:intron 35.0%
!! CATTTGAATTTTGATCTCCC+AGG + Chr3:98070597-98070616 MsG0380017579.01.T01:intron 35.0%
!! CTACATCTGATTTTAGCACT+CGG - Chr3:98070708-98070727 None:intergenic 35.0%
!! CTCTCGTGGATCATTTTTAT+TGG - Chr3:98068264-98068283 None:intergenic 35.0%
!! GAATACTGATAGCGTGTTTT+TGG - Chr3:98069437-98069456 None:intergenic 35.0%
!! GCAGACTCTTTTTCATTTGA+GGG - Chr3:98068046-98068065 None:intergenic 35.0%
AATAATAGTGCCTCATACGG+TGG + Chr3:98070997-98071016 MsG0380017579.01.T01:CDS 40.0%
AATGCACTCCTAACGTAAAC+CGG + Chr3:98068661-98068680 MsG0380017579.01.T01:intron 40.0%
AATTCGAATCTTGCTGGGTT+TGG + Chr3:98071039-98071058 MsG0380017579.01.T01:CDS 40.0%
ACAATGATGTCGTCGACAAT+GGG + Chr3:98071079-98071098 MsG0380017579.01.T01:CDS 40.0%
ACCTGATTCATTATCCTCGT+CGG - Chr3:98070218-98070237 None:intergenic 40.0%
CACAACTCATAGCATTGCTT+AGG - Chr3:98071107-98071126 None:intergenic 40.0%
CTTTAAATTCAAGCAGCCGT+TGG + Chr3:98067953-98067972 MsG0380017579.01.T01:intron 40.0%
GAAAACCTAAAGTAGGGATG+TGG + Chr3:98067647-98067666 MsG0380017579.01.T01:intron 40.0%
GAGATATATGAGAGAAAGGG+AGG + Chr3:98067532-98067551 MsG0380017579.01.T01:intron 40.0%
TACAATGATGTCGTCGACAA+TGG + Chr3:98071078-98071097 MsG0380017579.01.T01:CDS 40.0%
TAGTGTGAACGCATGACTTT+GGG + Chr3:98067743-98067762 MsG0380017579.01.T01:intron 40.0%
TCTAAGTTCCACCAATCCAA+CGG - Chr3:98067972-98067991 None:intergenic 40.0%
TGAATTGCATATGGAGCAGT+TGG + Chr3:98070115-98070134 MsG0380017579.01.T01:intron 40.0%
TGAGGAATGTTGAGATGTGT+AGG - Chr3:98070071-98070090 None:intergenic 40.0%
TGCACAATTCGAATCTTGCT+GGG + Chr3:98071034-98071053 MsG0380017579.01.T01:CDS 40.0%
TTGTCGACGACATCATTGTA+AGG - Chr3:98071078-98071097 None:intergenic 40.0%
TTTGTCTGAACTTGAGTCTC+AGG + Chr3:98070432-98070451 MsG0380017579.01.T01:CDS 40.0%
! AATGCTGTCTTGCTCTCTTT+TGG + Chr3:98067783-98067802 MsG0380017579.01.T01:intron 40.0%
! TATGAGAGAAAGGGAGGTAT+TGG + Chr3:98067538-98067557 MsG0380017579.01.T01:intron 40.0%
!! ATCAATAGTAGCACTGATGG+TGG - Chr3:98069992-98070011 None:intergenic 40.0%
!! ATTCGTGACTTGGTTTCAGA+AGG + Chr3:98070359-98070378 MsG0380017579.01.T01:intron 40.0%
!! CAGTTGCAGTTTTTCAACCT+GGG - Chr3:98070617-98070636 None:intergenic 40.0%
!! TGTAGAAGCTTTGAGAGCTA+AGG + Chr3:98070723-98070742 MsG0380017579.01.T01:CDS 40.0%
!! TTCGTGACTTGGTTTCAGAA+GGG + Chr3:98070360-98070379 MsG0380017579.01.T01:intron 40.0%
!!! CTCTGTTTTTACCCTTCACA+TGG - Chr3:98069801-98069820 None:intergenic 40.0%
AATTCAAGCAGCCGTTGGAT+TGG + Chr3:98067958-98067977 MsG0380017579.01.T01:intron 45.0%
AGAGAGAAGAGTTTACCGGT+AGG - Chr3:98067123-98067142 None:intergenic 45.0%
AGGCACTATTATTTCCCTGC+AGG - Chr3:98070990-98071009 None:intergenic 45.0%
AGTGTGAACGCATGACTTTG+GGG + Chr3:98067744-98067763 MsG0380017579.01.T01:intron 45.0%
AGTTTACCGGTAGGAGAGTT+TGG - Chr3:98067114-98067133 None:intergenic 45.0%
ATTTCCCTGCAGGACATTGA+TGG - Chr3:98070980-98070999 None:intergenic 45.0%
CAATGATGTCGTCGACAATG+GGG + Chr3:98071080-98071099 MsG0380017579.01.T01:CDS 45.0%
CAGCCATCTATTTATGGCAC+TGG + Chr3:98070015-98070034 MsG0380017579.01.T01:CDS 45.0%
CTAGTGTGAACGCATGACTT+TGG + Chr3:98067742-98067761 MsG0380017579.01.T01:intron 45.0%
GAGACAATTTCTCATGCAGG+AGG + Chr3:98069407-98069426 MsG0380017579.01.T01:intron 45.0%
GATTCATTATCCTCGTCGGA+TGG - Chr3:98070214-98070233 None:intergenic 45.0%
GGTGAAGTTAGCTGAGGATA+TGG + Chr3:98070831-98070850 MsG0380017579.01.T01:intron 45.0%
GTATCCAAGTCTTGCCGATA+CGG + Chr3:98067054-98067073 MsG0380017579.01.T01:CDS 45.0%
GTGCACAATTCGAATCTTGC+TGG + Chr3:98071033-98071052 MsG0380017579.01.T01:CDS 45.0%
TCCGACGAGGATAATGAATC+AGG + Chr3:98070214-98070233 MsG0380017579.01.T01:CDS 45.0%
TCGCTCAACGCTTACTTAAC+CGG + Chr3:98067249-98067268 MsG0380017579.01.T01:intron 45.0%
TCTTGCTGGGTTTGGAAACT+TGG + Chr3:98071047-98071066 MsG0380017579.01.T01:CDS 45.0%
! AACAACGACCGGTTTACGTT+AGG - Chr3:98068672-98068691 None:intergenic 45.0%
! CAAGACAAGATTCTTGGTGC+TGG - Chr3:98067847-98067866 None:intergenic 45.0%
! CCAGGTTGAAAAACTGCAAC+TGG + Chr3:98070615-98070634 MsG0380017579.01.T01:intron 45.0%
! TTGATGGTTGGCGAAACATG+TGG - Chr3:98070964-98070983 None:intergenic 45.0%
! TTTTCTCCACCTTGACCTCT+TGG - Chr3:98070404-98070423 None:intergenic 45.0%
!! AGCACTGATGGTGGAATGTT+TGG - Chr3:98069983-98070002 None:intergenic 45.0%
!! CCAGTTGCAGTTTTTCAACC+TGG - Chr3:98070618-98070637 None:intergenic 45.0%
!! GCACTGATGGTGGAATGTTT+GGG - Chr3:98069982-98070001 None:intergenic 45.0%
!!! GTCTTGCTCTCTTTTGGAGT+TGG + Chr3:98067789-98067808 MsG0380017579.01.T01:intron 45.0%
!!! AATATGTTAATTTTTTTTTT+AGG - Chr3:98068321-98068340 None:intergenic 5.0%
!!! ATTTTTACTTATATATAATT+TGG - Chr3:98067438-98067457 None:intergenic 5.0%
ATGAAGGGGGAGAGATACAG+AGG + Chr3:98068364-98068383 MsG0380017579.01.T01:intron 50.0%
CCAACCATCAATGTCCTGCA+GGG + Chr3:98070973-98070992 MsG0380017579.01.T01:CDS 50.0%
CCTACCATGCAGTTTGTGTG+AGG + Chr3:98067225-98067244 MsG0380017579.01.T01:intron 50.0%
CCTCACACAAACTGCATGGT+AGG - Chr3:98067228-98067247 None:intergenic 50.0%
CGATCCTCACACAAACTGCA+TGG - Chr3:98067232-98067251 None:intergenic 50.0%
CGCTTTCCAAACTCTCCTAC+CGG + Chr3:98067105-98067124 MsG0380017579.01.T01:CDS 50.0%
CGGTAGGAGAGTTTGGAAAG+CGG - Chr3:98067107-98067126 None:intergenic 50.0%
CTAATTGCGAGTCAGCCAAG+AGG + Chr3:98070386-98070405 MsG0380017579.01.T01:CDS 50.0%
GCAACCCACATCCCTACTTT+AGG - Chr3:98067655-98067674 None:intergenic 50.0%
GGTCATGAATGCCTCCGTAT+CGG - Chr3:98067071-98067090 None:intergenic 50.0%
GTGTGAACGCATGACTTTGG+GGG + Chr3:98067745-98067764 MsG0380017579.01.T01:intron 50.0%
TAGGAGAGTTTGGAAAGCGG+CGG - Chr3:98067104-98067123 None:intergenic 50.0%
TTCATCTGATCCATCCGACG+AGG + Chr3:98070201-98070220 MsG0380017579.01.T01:CDS 50.0%
TTGGCGAAACATGTGGCATG+CGG - Chr3:98070957-98070976 None:intergenic 50.0%
!! GATACGGAGGCATTCATGAC+CGG + Chr3:98067070-98067089 MsG0380017579.01.T01:CDS 50.0%
!! TTTTGCCACGTCTGATGACG+TGG + Chr3:98067199-98067218 MsG0380017579.01.T01:intron 50.0%
AACCGCAACACCACCGTATG+AGG - Chr3:98071010-98071029 None:intergenic 55.0%
AAGGGGGAGAGATACAGAGG+AGG + Chr3:98068367-98068386 MsG0380017579.01.T01:intron 55.0%
AGGGGGAGAGATACAGAGGA+GGG + Chr3:98068368-98068387 MsG0380017579.01.T01:intron 55.0%
AGTCAGCCAAGAGGTCAAGG+TGG + Chr3:98070395-98070414 MsG0380017579.01.T01:CDS 55.0%
AGTGTGAGGTAGGGAGAGAG+GGG + Chr3:98068391-98068410 MsG0380017579.01.T01:intron 55.0%
ATGTGGCATGCGGCGAATAC+TGG - Chr3:98070947-98070966 None:intergenic 55.0%
GAGTGTGAGGTAGGGAGAGA+GGG + Chr3:98068390-98068409 MsG0380017579.01.T01:intron 55.0%
GCCAACCATCAATGTCCTGC+AGG + Chr3:98070972-98070991 MsG0380017579.01.T01:CDS 55.0%
GGATTCCACGTCATCAGACG+TGG - Chr3:98067207-98067226 None:intergenic 55.0%
TCCAAGTCTTGCCGATACGG+AGG + Chr3:98067057-98067076 MsG0380017579.01.T01:CDS 55.0%
! AACGCATGACTTTGGGGGTG+TGG + Chr3:98067750-98067769 MsG0380017579.01.T01:intron 55.0%
! ACGCATGACTTTGGGGGTGT+GGG + Chr3:98067751-98067770 MsG0380017579.01.T01:intron 55.0%
! AGAGGAGGGAGTGTGAGGTA+GGG + Chr3:98068382-98068401 MsG0380017579.01.T01:intron 55.0%
! CCCTGCAGGACATTGATGGT+TGG - Chr3:98070976-98070995 None:intergenic 55.0%
! GATACAGAGGAGGGAGTGTG+AGG + Chr3:98068377-98068396 MsG0380017579.01.T01:intron 55.0%
! TCAAGCAGCCGTTGGATTGG+TGG + Chr3:98067961-98067980 MsG0380017579.01.T01:intron 55.0%
! TGCCTCATACGGTGGTGTTG+CGG + Chr3:98071005-98071024 MsG0380017579.01.T01:CDS 55.0%
!! TCATACGGTGGTGTTGCGGT+TGG + Chr3:98071009-98071028 MsG0380017579.01.T01:CDS 55.0%
GAAAGCGGCGGAGCAAACTC+CGG - Chr3:98067092-98067111 None:intergenic 60.0%
GCGAGTCAGCCAAGAGGTCA+AGG + Chr3:98070392-98070411 MsG0380017579.01.T01:CDS 60.0%
GGAGTGTGAGGTAGGGAGAG+AGG + Chr3:98068389-98068408 MsG0380017579.01.T01:intron 60.0%
GTGTGAGGTAGGGAGAGAGG+GGG + Chr3:98068392-98068411 MsG0380017579.01.T01:intron 60.0%
! CAGAGGAGGGAGTGTGAGGT+AGG + Chr3:98068381-98068400 MsG0380017579.01.T01:intron 60.0%
! GCCTCCGTATCGGCAAGACT+TGG - Chr3:98067061-98067080 None:intergenic 60.0%
CCGGCGAGCGATGGCAACAA+CGG + Chr3:98066988-98067007 MsG0380017579.01.T01:exon 65.0%
CCGTTGTTGCCATCGCTCGC+CGG - Chr3:98066991-98067010 None:intergenic 65.0%
CTCTCTTCTCCGGCGAGCGA+TGG + Chr3:98066979-98066998 MsG0380017579.01.T01:exon 65.0%
GAGGTAGGGAGAGAGGGGGA+GGG + Chr3:98068396-98068415 MsG0380017579.01.T01:intron 65.0%
TGAGGTAGGGAGAGAGGGGG+AGG + Chr3:98068395-98068414 MsG0380017579.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98066937 98071281 98066937 ID=MsG0380017579.01;Name=MsG0380017579.01
Chr3 mRNA 98066937 98071281 98066937 ID=MsG0380017579.01.T01;Parent=MsG0380017579.01;Name=MsG0380017579.01.T01;_AED=0.38;_eAED=0.38;_QI=61|0.8|0.83|1|1|1|6|138|303
Chr3 exon 98066937 98067126 98066937 ID=MsG0380017579.01.T01:exon:6150;Parent=MsG0380017579.01.T01
Chr3 exon 98069919 98070036 98069919 ID=MsG0380017579.01.T01:exon:6151;Parent=MsG0380017579.01.T01
Chr3 exon 98070134 98070284 98070134 ID=MsG0380017579.01.T01:exon:6152;Parent=MsG0380017579.01.T01
Chr3 exon 98070378 98070453 98070378 ID=MsG0380017579.01.T01:exon:6153;Parent=MsG0380017579.01.T01
Chr3 exon 98070619 98070744 98070619 ID=MsG0380017579.01.T01:exon:6154;Parent=MsG0380017579.01.T01
Chr3 exon 98070832 98071281 98070832 ID=MsG0380017579.01.T01:exon:6155;Parent=MsG0380017579.01.T01
Chr3 five_prime_UTR 98066937 98066997 98066937 ID=MsG0380017579.01.T01:five_prime_utr;Parent=MsG0380017579.01.T01
Chr3 CDS 98066998 98067126 98066998 ID=MsG0380017579.01.T01:cds;Parent=MsG0380017579.01.T01
Chr3 CDS 98069919 98070036 98069919 ID=MsG0380017579.01.T01:cds;Parent=MsG0380017579.01.T01
Chr3 CDS 98070134 98070284 98070134 ID=MsG0380017579.01.T01:cds;Parent=MsG0380017579.01.T01
Chr3 CDS 98070378 98070453 98070378 ID=MsG0380017579.01.T01:cds;Parent=MsG0380017579.01.T01
Chr3 CDS 98070619 98070744 98070619 ID=MsG0380017579.01.T01:cds;Parent=MsG0380017579.01.T01
Chr3 CDS 98070832 98071143 98070832 ID=MsG0380017579.01.T01:cds;Parent=MsG0380017579.01.T01
Chr3 three_prime_UTR 98071144 98071281 98071144 ID=MsG0380017579.01.T01:three_prime_utr;Parent=MsG0380017579.01.T01
Gene Sequence

>MsG0380017579.01.T01

ATGGCAACAACGGAATCTGATCTTGATGAGTTTTTGAATCTCGATTACGAGTTTCGGTATCCAAGTCTTGCCGATACGGAGGCATTCATGACCGGAGTTTGCTCCGCCGCTTTCCAAACTCTCCTACCGCAGGATGTTGTGAGTTCATTTTCAACTTGTGGTGGACTAACAGACTCCCAAAACTTCACTCCCAAACATTCCACCATCAGTGCTACTATTGATTCTCAGCCATCTATTTATGGCACTGTTGGAAGCCCAGTTTCAGCTAATAAACCAAACAACAAAGAGAATAATATCAAAGGGACATCAAGTGGTTCATCTGATCCATCCGACGAGGATAATGAATCAGGTCATTGTGAACAAATTACAAATAAACTTGATATGAAACGCCATAGAAGAAGGGTTTCTAATTGCGAGTCAGCCAAGAGGTCAAGGTGGAGAAAACAAGCACATTTGTCTGAACTTGAGTCTCAGGTTGAAAAACTGCAACTGGAAAATGCAACACTATACAAACAGTTTACGGATACTATTCAACAATTTCATGAGGCTGATACAAATAACCGAGTGCTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACTAGAAGTTCTTTCACCACATCACTAAACAATCAGTTTCTTCACAATCAACGTCAAATGAGCACAACACCACAACTCAACATGACTACCAGTATTCGCCGCATGCCACATGTTTCGCCAACCATCAATGTCCTGCAGGGAAATAATAGTGCCTCATACGGTGGTGTTGCGGTTGGCGTGCACAATTCGAATCTTGCTGGGTTTGGAAACTTGGACGTGCCTTACAATGATGTCGTCGACAATGGGGTCCTAAGCAATGCTATGAGTTGTGTAAATATTTGGCCTTAA

Protein sequence

>MsG0380017579.01.T01

MATTESDLDEFLNLDYEFRYPSLADTEAFMTGVCSAAFQTLLPQDVVSSFSTCGGLTDSQNFTPKHSTISATIDSQPSIYGTVGSPVSANKPNNKENNIKGTSSGSSDPSDEDNESGHCEQITNKLDMKRHRRRVSNCESAKRSRWRKQAHLSELESQVEKLQLENATLYKQFTDTIQQFHEADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTTSLNNQFLHNQRQMSTTPQLNMTTSIRRMPHVSPTINVLQGNNSASYGGVAVGVHNSNLAGFGNLDVPYNDVVDNGVLSNAMSCVNIWP*