AlfalfaGEDB | MsG0380014609.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014609.01

KEGG: K12616
GO: GO:0005515
PFAM: PF16529

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014609.01.T01	XP_003600439.1	98.412	1385	20	1	1	1385	1	1383	0	2803

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014609.01.T01	Q9LTT8	58.276	1311	479	20	93	1385	84	1344	0	1427

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014609.01.T01	G7IY76	98.412	1385	20	1	1	1385	1	1383	0.0	2803

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048995.01	MsG0380014609.01	-0.817871	2.633836e-52	1.940989e-49
MsG0180003637.01	MsG0380014609.01	0.803075	4.144344e-49	2.063166e-46
MsG0180005836.01	MsG0380014609.01	0.833221	6.038694e-56	6.909469e-53
MsG0180005873.01	MsG0380014609.01	0.831138	1.977959e-55	2.127368e-52
MsG0180005986.01	MsG0380014609.01	0.822331	2.508389e-53	2.093172e-50
MsG0280006505.01	MsG0380014609.01	0.827512	1.501513e-54	1.452644e-51
MsG0280007014.01	MsG0380014609.01	0.830638	2.623300e-55	2.780129e-52
MsG0280007025.01	MsG0380014609.01	0.821064	4.924699e-53	3.965449e-50
MsG0280008452.01	MsG0380014609.01	0.808876	2.496584e-50	1.443907e-47
MsG0280008492.01	MsG0380014609.01	0.825074	5.715020e-54	5.155700e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0380014609.01.T01	MTR_3g061160	98.412	1385	20	1	1	1385	1	1383	2803
MsG0380014609.01.T01	MTR_2g027690	53.522	1377	532	26	52	1385	67	1378	1301
MsG0380014609.01.T01	MTR_2g027690	54.310	1160	459	18	259	1385	1	1122	1128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0380014609.01.T01	AT3G13300	58.276	1311	479	20	93	1385	49	1309	1428
MsG0380014609.01.T01	AT3G13300	58.276	1311	479	20	93	1385	84	1344	1427
MsG0380014609.01.T01	AT3G13290	55.067	1411	534	30	2	1385	3	1340	1412
MsG0380014609.01.T01	AT3G13300	56.010	1173	451	19	93	1247	84	1209	1201

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Find 409 sgRNAs with CRISPR-Local

Find 689 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGATGCCCATCATG+AGG	0.647371	3:-57162648	None:intergenic
AAAAGAGGGTAGAAGGCTTG+AGG	0.641978	3:+57165142	MsG0380014609.01.T01:CDS
AAAATCGGGAAGTGAAGCTC+TGG	0.423065	3:+57163008	MsG0380014609.01.T01:CDS
AAAGCTTCCTGGACAACCTT+GGG	0.444345	3:-57163738	None:intergenic
AAAGGGGTTGGGGAAGGTGG+TGG	0.406728	3:-57159782	None:intergenic
AAATAGCAATCCTCAAATTG+CGG	0.643611	3:+57164551	MsG0380014609.01.T01:CDS
AAATCGGGAAGTGAAGCTCT+GGG	0.602446	3:+57163009	MsG0380014609.01.T01:CDS
AAATGATGAACTTGGCAGGC+AGG	0.461164	3:+57164125	MsG0380014609.01.T01:CDS
AAATGTAACAGATAAAGATA+TGG	0.389845	3:+57162589	MsG0380014609.01.T01:intron
AAATGTTAGGGTTAGGGTTA+GGG	0.355061	3:-57159841	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGCAATCCTCAAATTG+CGG	+	Chr3:57164551-57164570	MsG0380014609.01.T01:CDS	30.0%
AAATGAAGTGATTCTCTTGA+TGG	-	Chr3:57167646-57167665	None:intergenic	30.0%
AAATGTCTCAAATTACTTGC+AGG	+	Chr3:57166205-57166224	MsG0380014609.01.T01:intron	30.0%
AACAACAAAACAAGATAGTG+TGG	-	Chr3:57161714-57161733	None:intergenic	30.0%
AACATTATCATCTACTATCG+CGG	+	Chr3:57165406-57165425	MsG0380014609.01.T01:CDS	30.0%
AAGAAAGTGAGTGTTAAAGA+GGG	-	Chr3:57166457-57166476	None:intergenic	30.0%
AATACAAAACAACAGGGTAA+AGG	-	Chr3:57166167-57166186	None:intergenic	30.0%
AATAGAAGACAAACGTGATT+AGG	-	Chr3:57162566-57162585	None:intergenic	30.0%
AATCCATAGACAAACAAACA+AGG	-	Chr3:57161492-57161511	None:intergenic	30.0%
AATGTCTCAAATTACTTGCA+GGG	+	Chr3:57166206-57166225	MsG0380014609.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	57159501	57168261	57159501	ID=MsG0380014609.01;Name=MsG0380014609.01
Chr3	mRNA	57159501	57168261	57159501	ID=MsG0380014609.01.T01;Parent=MsG0380014609.01;Name=MsG0380014609.01.T01;_AED=0.45;_eAED=0.45;_QI=263\|1\|1\|1\|1\|1\|12\|276\|1385
Chr3	exon	57159501	57160525	57159501	ID=MsG0380014609.01.T01:exon:16181;Parent=MsG0380014609.01.T01
Chr3	exon	57161408	57161457	57161408	ID=MsG0380014609.01.T01:exon:16182;Parent=MsG0380014609.01.T01
Chr3	exon	57161545	57161701	57161545	ID=MsG0380014609.01.T01:exon:16183;Parent=MsG0380014609.01.T01
Chr3	exon	57161806	57162024	57161806	ID=MsG0380014609.01.T01:exon:16184;Parent=MsG0380014609.01.T01
Chr3	exon	57162600	57162728	57162600	ID=MsG0380014609.01.T01:exon:16185;Parent=MsG0380014609.01.T01
Chr3	exon	57163001	57164596	57163001	ID=MsG0380014609.01.T01:exon:16186;Parent=MsG0380014609.01.T01
Chr3	exon	57165080	57165439	57165080	ID=MsG0380014609.01.T01:exon:16187;Parent=MsG0380014609.01.T01
Chr3	exon	57165568	57165687	57165568	ID=MsG0380014609.01.T01:exon:16188;Parent=MsG0380014609.01.T01
Chr3	exon	57165817	57165987	57165817	ID=MsG0380014609.01.T01:exon:16189;Parent=MsG0380014609.01.T01
Chr3	exon	57166916	57167074	57166916	ID=MsG0380014609.01.T01:exon:16190;Parent=MsG0380014609.01.T01
Chr3	exon	57167191	57167316	57167191	ID=MsG0380014609.01.T01:exon:16191;Parent=MsG0380014609.01.T01
Chr3	exon	57167677	57168261	57167677	ID=MsG0380014609.01.T01:exon:16192;Parent=MsG0380014609.01.T01
Chr3	five_prime_UTR	57159501	57159763	57159501	ID=MsG0380014609.01.T01:five_prime_utr;Parent=MsG0380014609.01.T01
Chr3	CDS	57159764	57160525	57159764	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57161408	57161457	57161408	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57161545	57161701	57161545	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57161806	57162024	57161806	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57162600	57162728	57162600	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57163001	57164596	57163001	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57165080	57165439	57165080	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57165568	57165687	57165568	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57165817	57165987	57165817	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57166916	57167074	57166916	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57167191	57167316	57167191	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	CDS	57167677	57167985	57167677	ID=MsG0380014609.01.T01:cds;Parent=MsG0380014609.01.T01
Chr3	three_prime_UTR	57167986	57168261	57167986	ID=MsG0380014609.01.T01:three_prime_utr;Parent=MsG0380014609.01.T01

Gene Sequence

>MsG0380014609.01.T01

ATGTCTTCTCCCAATCAACCACCACCTTCCCCAACCCCTTTCGATATGCACACTTTCTTCAACCCCCCAAACCCTAACCCTAACCCTAACCCTAACATTTCTTCTCAATTCCCTTCCTCCGCTCCTTCACCGCCACCACCTTCTTCATCCTCCTCTTACCCTTTCCCTCACAACAACAATAACTACCCTTACGATCACCACCATCACCAGCTTCAGCTTCAGCATCAGCATCAACAACAGCACCATCAACAAAACCAGACCAATTTTCCAATTCAACACCGTTCAATTTCATTCCCTACACCCCCTCTTCAACCACCTCAACAACCTCAACCAATCCCACCTCCTTCAAATCCTAACGCCGGTGCCCGTCTCATGGCTCTCCTCAGCACCCCTCCAATCCAACAACAACAACCACCACCGCCACAATCACAGCCCATCTCTTCTGGCGCTGTTAATCCGGCGATAACTGCTGCCAATGCTGCCGCGGCAGCGTTGATTAGGCTGCCGAGTAGTAAAGTGCCGAAAGGAAGGCATTTGATTGGTGATCATGTTGTGTATGATGTGGATGTTAGGTTGCCTGGTGAAGTGCAGCCTCAGCTTGAGGTTGCGCCGATTACGAAATATGGATCGGATCCTAATCCGGTTTTGGGTCGACAGATTGCTGTGAATAAGTCTTATATTTGTTATGGGTTGAAACAGGGGAATATCAGGGTGCTTAATATTCATACTGCTGTTAGATCTTTGCTTAGAGGGCACACTCAGAGGGTCACAGACTTGGCATTCTTTGCCGAAGATGTTCATCTCCTGGCTAGTGTTGGCACAGATGGCCGTGTCTTTGTGTGGAAAATTTCTGAAGGTCCGGATGATGAAGATAAGCCTCAAATTACTGCCAATATTGTTATTGCTGTTCAAATAGTCGGAGAGGAGAAAGTTGAACATCCTCAAATTTGCTGGCACTGCCACAAACAAGAAATTTTGATAGTTGGTATGGGAAAAAATGTTCTGAGAATTGACACCACAAAAGTTGGAAATGGTGAAGCCTTTGTGGCAGAAGATCCTCCAAAATGTCCTCTTGACAAGCTCATTGATGGGGTTCAACTTGTAGGAACACATGATGGGGAGGTCACTGATTTGTCAATGTGCCAATGGATGACAAATCGATTGGTATCAGCATCACAGGATGGCACGATAAAGATATGGGAAGATCGGAAGACACAGCCACTTGCTGTGTTCAGACCTCATGATGGGCATCCTGTTTTTTCTGCTACATTTTTTACTGCTCCACACCAGCCTGATCATATTGTCCTTATCACAGCAGGACCACAAAATCGGGAAGTGAAGCTCTGGGTCTCAGCTAGTGAAGAAGGTTGGCTGCTCCCAAGCAATACTGAAACATGGAAATGCACTCAGACTTTGGAGTTGAAGAGTTCAGCTAAGCCGTCTCTTAAGGATGCATTCTTTAATCAAGTTGCAGCATTGCCTCATGCAGGTCTGCTTTTACTTGCAAATGCCCAGAGGAATGCTATATATGCTGTGCACTTGGAATATGGTCCTAATCCCGAATCAACTCGCATGGATTATATGTCCGAGTTTACTGTGACCATGCCCATTCTTAGTTTTACTGGAACAAGTGATATTTTGCCTCATGGGGAACATATTGTTCAGGTTTATTGTGTTCAGACACTGGCTATTCAGCAGTATGCTTTGGATTTGGCACAATGCTTGCCTCCACCATTAGAAAATGCGGGACTAGATAAGTCTGATTCCAGTGTTTCACGAGATGCAATTACTGCTGAAGGATTTGCCTCTTTAGACTCGTCTGCAGGTAGAACATCTGAGATGTCTTTACCCAGTTCTGCTCCCAAAACAATGATGCAAGCAAGTAGCACTGAGAGTGGTCTCGTGTCAAGATACCCTTTAAGCTCAGGTCATACTGAAGCACCTATTTCTAGACAAATCAGCAGTTCAAATATTGAAGCTAAAACTGTTACACTGGCTCCTTCTAGTAGTGATGCTGATATTGTTTGTGTTCCTTCTCCACCTCCTCCTTTGAGCCCAAGGTTGTCCAGGAAGCTTTCTGATTTCAGGAGTCCACAATCTAACTTGAGTGATCATGTTGGGGACCAAGCTGTTAATGATTATTCTGTTGACAGACAAATGGATACAATTCACAGGAACTTGTCCGACCAATTTAATAGCGATACAAAGAATGATGACAATAAAAACAAACAGGATGACATTTCTACTGTACTTAACCCTTCTGTCATTTTTAAGCAACCAACTCATCTGGTTACACCATCTGAGATTACAAAAGCCAGTTCCTCCTCTGAGACTAATATGGTCGACAGAGTGAGTGAGGTAGAAACAAAGATCCAGGATGTGGTTGATGTGGGTAATGCCGAAGTAGAAGTGAAAGTGGTAGGTGAAGCAAGGCCTAATCAAAATGATGAACTTGGCAGGCAGGGGCCACAACAAAACCCAGTTTCTGATGGCAAAGAAAAATTCTTTTGCTCTCAGGCTTCTGATCTTGGCATTGAGATGGCCCGAGAGTGTGGTGCGATAGGTGGGGAGACTTACATTACAGAGGAACCTGGACAAGTTGATTCTACTGGAGGGGACTCGCTGGCCCAACCTTCCAATGCCGGTGAGGATGGACTTCAAGACTTACCAAAAGATGTCCATGAAAAGGTTTCCGACTCATCTACATCAATGGTAGTACCACCATCACCTGCATCTAATACAAAAGGGAAGAGACAAAAGGGTAAGAACTCTCAACCATCAGGTCCGTCTTCCCCGTCTCCTAGTGCATGCAATTCAACCGATTCGTCCAATGAACCAAATGGAATTTCAAACCTCCCATGTACTGAAAATAGCAATCCTCAAATTGCGGCAATGCAAGATTCACTCAATCAGTTATTGACAATGCAAAAGGAGATGCAGAAACAAATGACAATGACGGTAACAGTTCCAGTTACAAAAGAGGGTAGAAGGCTTGAGGCCGCCCTAGGGAGAAGCATGGAAAAAGCTGTTAAGTCCAATGCTGATGCTTTGTGGGCTAGAATTCAAGATGAAAATGCAAAAAATGAGAAGTTGTTGCGAGACCGTTTCCAGCATGTTACAGGTTTGATTACCAACTTCATGAACAAGGATCTACCAGCAGCATTGGAGAAAACTGTAAAGAAGGAAATGACTTCAGTTGCGCAAGCTTTAGTTCGTTCAATGTCTCCTGCTATTGAGAAAACATTATCATCTACTATCGCGGAATCCTTCCAGAGAGGAGTGGGCGACAAGGCGGTGAATCAACTTGATAAATCAGTTAATTTAAAGCTCGAAGCTACTGTAGCTAGGCAAATCCAAGCACAGTTTCAGACAACTGTCAAACAGGCACTTCAGGATGCACTTAAATCCAGTTTTGAAACGACAGTGGTCCCTGCATTTGAGATGTCCTGCAAAGCCATGTTTGAGCAAGTTGATTCTACATTCCAGAAAGGCATGGCTGAACATTCAAATGCAGTGCAGCAACGCCTTGAATCTGGGCCTACTTCGTTGGCAATGACTCTAAGGGATTCCATTAATTCAGCATCATCAGTTACTCAAACCTTGAGTAGAGAAGTGCTCGAGGGTCAGAGAAAGCTAATGGCACTTGCAACCTCAAGAACAAACTCTGGCACATTGAATACTCTGCCCATCCAGCTGAACAACGGTCCTTTACTTCATGAAAAGGTTGAGGCACCACTAGATCCCACAAAGGAGCTAGCAAGGTTGATTTCTGAGCGGAAATATGAGGAGGCATTTATTGCAGCACTACACAGAAGTGATGTATCTATTGTATCTTGGTTATGCTCTCAGGTTGATTTACATGGACTTTTGACATTGGTTCCTCTTCCCTTAAGCCAAGGTGTAGTGCTTTCACTTCTGCAGCAGCTGGCATGTGATATCAACAATGACATGTCCCGAAAGCTCTCGTGGATGACAGACGTGGCTACTGCTATTAATCCCTCAGATCCCATGATAACAATGCACGTGCGACCCATCTTTGAGCAAGTCTATCAGATACTGAACCATCAACGTAACTTGCCTTCTATCACTGGATCTGATCTTTCAAGTACCCGTCTTTTATTGCATGTCATCAACTCCATGCTGACGACATGTAAATGA

Protein sequence

>MsG0380014609.01.T01

MSSPNQPPPSPTPFDMHTFFNPPNPNPNPNPNISSQFPSSAPSPPPPSSSSSYPFPHNNNNYPYDHHHHQLQLQHQHQQQHHQQNQTNFPIQHRSISFPTPPLQPPQQPQPIPPPSNPNAGARLMALLSTPPIQQQQPPPPQSQPISSGAVNPAITAANAAAAALIRLPSSKVPKGRHLIGDHVVYDVDVRLPGEVQPQLEVAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHTQRVTDLAFFAEDVHLLASVGTDGRVFVWKISEGPDDEDKPQITANIVIAVQIVGEEKVEHPQICWHCHKQEILIVGMGKNVLRIDTTKVGNGEAFVAEDPPKCPLDKLIDGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTQPLAVFRPHDGHPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSASEEGWLLPSNTETWKCTQTLELKSSAKPSLKDAFFNQVAALPHAGLLLLANAQRNAIYAVHLEYGPNPESTRMDYMSEFTVTMPILSFTGTSDILPHGEHIVQVYCVQTLAIQQYALDLAQCLPPPLENAGLDKSDSSVSRDAITAEGFASLDSSAGRTSEMSLPSSAPKTMMQASSTESGLVSRYPLSSGHTEAPISRQISSSNIEAKTVTLAPSSSDADIVCVPSPPPPLSPRLSRKLSDFRSPQSNLSDHVGDQAVNDYSVDRQMDTIHRNLSDQFNSDTKNDDNKNKQDDISTVLNPSVIFKQPTHLVTPSEITKASSSSETNMVDRVSEVETKIQDVVDVGNAEVEVKVVGEARPNQNDELGRQGPQQNPVSDGKEKFFCSQASDLGIEMARECGAIGGETYITEEPGQVDSTGGDSLAQPSNAGEDGLQDLPKDVHEKVSDSSTSMVVPPSPASNTKGKRQKGKNSQPSGPSSPSPSACNSTDSSNEPNGISNLPCTENSNPQIAAMQDSLNQLLTMQKEMQKQMTMTVTVPVTKEGRRLEAALGRSMEKAVKSNADALWARIQDENAKNEKLLRDRFQHVTGLITNFMNKDLPAALEKTVKKEMTSVAQALVRSMSPAIEKTLSSTIAESFQRGVGDKAVNQLDKSVNLKLEATVARQIQAQFQTTVKQALQDALKSSFETTVVPAFEMSCKAMFEQVDSTFQKGMAEHSNAVQQRLESGPTSLAMTLRDSINSASSVTQTLSREVLEGQRKLMALATSRTNSGTLNTLPIQLNNGPLLHEKVEAPLDPTKELARLISERKYEEAFIAALHRSDVSIVSWLCSQVDLHGLLTLVPLPLSQGVVLSLLQQLACDINNDMSRKLSWMTDVATAINPSDPMITMHVRPIFEQVYQILNHQRNLPSITGSDLSSTRLLLHVINSMLTTCK*