AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007192.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007192.01.T01 MTR_2g022200 92.857 168 6 2 1 164 40 205 2.80e-108 307
MsG0280007192.01.T01 MTR_4g073560 96.203 79 3 0 76 154 118 196 2.34e-47 152
MsG0280007192.01.T01 MTR_8g077540 38.028 142 81 3 5 141 36 175 1.77e-26 99.4
MsG0280007192.01.T01 MTR_8g077540 38.028 142 81 3 5 141 62 201 2.35e-26 99.8
MsG0280007192.01.T01 MTR_5g016540 32.308 130 82 2 14 139 46 173 2.47e-23 90.9
MsG0280007192.01.T01 MTR_1g086480 31.538 130 83 2 14 139 46 173 6.05e-23 90.1
MsG0280007192.01.T01 MTR_5g034130 31.538 130 83 2 14 139 46 173 6.38e-23 89.7
MsG0280007192.01.T01 MTR_5g034125 31.538 130 83 2 14 139 46 173 6.38e-23 89.7
MsG0280007192.01.T01 MTR_6g005820 31.538 130 83 2 14 139 46 173 6.80e-23 89.7
MsG0280007192.01.T01 MTR_7g109960 31.538 130 83 2 14 139 46 173 7.03e-23 89.7
MsG0280007192.01.T01 MTR_4g128910 32.593 135 85 2 14 144 46 178 3.82e-21 85.5
MsG0280007192.01.T01 MTR_1g076550 35.659 129 77 2 15 139 47 173 1.79e-20 83.6
MsG0280007192.01.T01 MTR_4g026950 33.083 133 83 2 13 141 29 159 2.03e-20 82.8
MsG0280007192.01.T01 MTR_5g015370 33.083 133 83 2 13 141 48 178 3.66e-20 82.8
MsG0280007192.01.T01 MTR_5g078090 31.579 133 85 2 13 141 48 178 1.73e-17 75.9
MsG0280007192.01.T01 MTR_4g077640 27.536 138 94 2 14 147 46 181 6.04e-17 74.7
MsG0280007192.01.T01 MTR_5g007810 27.143 140 96 2 14 149 46 183 8.19e-17 74.3
MsG0280007192.01.T01 MTR_5g007820 26.573 143 97 2 14 150 46 186 3.60e-15 69.7
MsG0280007192.01.T01 MTR_7g112090 36.458 96 58 2 19 114 59 151 2.60e-13 65.1
MsG0280007192.01.T01 MTR_2g034640 37.500 96 57 2 19 114 59 151 4.69e-13 64.3
MsG0280007192.01.T01 MTR_4g121860 37.500 96 57 2 19 114 59 151 4.42e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007192.01.T01 AT5G52210 75.155 161 34 2 1 157 40 198 1.62e-82 242
MsG0280007192.01.T01 AT5G52210 75.155 161 34 2 1 157 40 198 1.62e-82 242
MsG0280007192.01.T01 AT2G15310 33.784 148 88 3 14 153 46 191 8.59e-25 95.5
MsG0280007192.01.T01 AT2G18390 36.620 142 83 3 5 141 36 175 1.35e-24 94.4
MsG0280007192.01.T01 AT5G14670 31.538 130 83 2 14 139 46 173 6.68e-23 89.7
MsG0280007192.01.T01 AT5G14670 31.538 130 83 2 14 139 46 173 6.68e-23 89.7
MsG0280007192.01.T01 AT3G62290 31.538 130 83 2 14 139 46 173 6.75e-23 89.7
MsG0280007192.01.T01 AT3G62290 31.538 130 83 2 14 139 46 173 6.75e-23 89.7
MsG0280007192.01.T01 AT3G62290 31.538 130 83 2 14 139 46 173 6.75e-23 89.7
MsG0280007192.01.T01 AT2G47170 31.538 130 83 2 14 139 46 173 6.97e-23 89.7
MsG0280007192.01.T01 AT2G47170 31.538 130 83 2 14 139 46 173 6.97e-23 89.7
MsG0280007192.01.T01 AT2G47170 31.538 130 83 2 14 139 46 173 6.97e-23 89.7
MsG0280007192.01.T01 AT5G14670 31.538 130 83 2 14 139 46 173 6.99e-23 90.1
MsG0280007192.01.T01 AT1G70490 31.538 130 83 2 14 139 46 173 7.13e-23 89.7
MsG0280007192.01.T01 AT1G70490 31.538 130 83 2 14 139 46 173 7.13e-23 89.7
MsG0280007192.01.T01 AT1G70490 31.538 130 83 2 14 139 46 173 7.13e-23 89.7
MsG0280007192.01.T01 AT1G70490 31.538 130 83 2 14 139 46 173 7.13e-23 89.7
MsG0280007192.01.T01 AT1G70490 31.538 130 83 2 14 139 46 173 7.13e-23 89.7
MsG0280007192.01.T01 AT1G70490 31.538 130 83 2 14 139 46 173 7.13e-23 89.7
MsG0280007192.01.T01 AT1G23490 31.538 130 83 2 14 139 46 173 7.13e-23 89.7
MsG0280007192.01.T01 AT1G70490 31.538 130 83 2 14 139 46 173 7.13e-23 89.7
MsG0280007192.01.T01 AT1G10630 31.538 130 83 2 14 139 46 173 7.44e-23 89.7
MsG0280007192.01.T01 AT1G10630 31.538 130 83 2 14 139 46 173 7.44e-23 89.7
MsG0280007192.01.T01 AT3G49870 34.586 133 81 2 13 141 29 159 2.53e-21 85.5
MsG0280007192.01.T01 AT5G67560 34.586 133 81 2 13 141 48 178 6.01e-21 84.7
MsG0280007192.01.T01 AT3G49870 34.586 133 81 2 13 141 48 178 6.01e-21 84.7
MsG0280007192.01.T01 AT3G22950 34.351 131 80 2 15 141 47 175 1.21e-20 84.0
MsG0280007192.01.T01 AT3G22950 34.351 131 80 2 15 141 47 175 1.21e-20 84.0
MsG0280007192.01.T01 AT2G24765 32.593 135 85 2 14 144 46 178 1.44e-20 84.0
MsG0280007192.01.T01 AT5G37680 33.083 133 83 2 13 141 1 131 4.64e-19 79.0
MsG0280007192.01.T01 AT1G02440 30.612 147 83 5 14 145 47 189 1.18e-18 79.0
MsG0280007192.01.T01 AT5G37680 33.083 133 83 2 13 141 48 178 2.21e-18 78.2
MsG0280007192.01.T01 AT3G03120 27.536 138 94 2 14 147 46 181 4.99e-17 74.7
MsG0280007192.01.T01 AT5G17060 26.812 138 95 2 14 147 46 181 2.92e-16 72.8
MsG0280007192.01.T01 AT5G17060 26.812 138 95 2 14 147 46 181 2.92e-16 72.8
MsG0280007192.01.T01 AT3G49860 30.827 133 86 2 13 141 40 170 5.19e-16 71.6
MsG0280007192.01.T01 AT1G02430 27.211 147 88 5 14 145 47 189 1.52e-13 65.5
MsG0280007192.01.T01 AT4G02080 37.500 96 57 2 19 114 59 151 4.47e-13 64.3
MsG0280007192.01.T01 AT3G62560 38.710 93 54 2 19 111 59 148 4.57e-13 64.3
MsG0280007192.01.T01 AT1G56330 37.500 96 57 2 19 114 59 151 1.49e-12 63.2
MsG0280007192.01.T01 AT2G24765 35.294 85 49 2 14 94 46 128 4.00e-12 60.5
MsG0280007192.01.T01 AT1G09180 37.500 96 57 2 19 114 59 151 3.77e-11 59.3

Find 83 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCATGTACTTTCCAATT+TGG 0.198592 2:+11681340 None:intergenic
TAAATTTAATTTATTCAAAT+AGG 0.255722 2:+11681085 None:intergenic
CATGTTGCAGGCTGGGTATC+AGG 0.269545 2:-11681513 MsG0280007192.01.T01:intron
ATAGCTTTGCATATCCAAAT+TGG 0.278034 2:-11681354 MsG0280007192.01.T01:three_prime_UTR
AGCTTGGTCTTCGCTCAATC+TGG 0.301799 2:-11682477 MsG0280007192.01.T01:CDS
ACCTGATGGATTGGTTATAA+AGG 0.303864 2:+11681173 None:intergenic
GCAAATAGAAACTTGTGTTC+TGG 0.314588 2:-11683173 MsG0280007192.01.T01:CDS
GTTTCTACATTCTGTCCTAT+TGG 0.324887 2:+11680820 None:intergenic
TCTTCAGATGATACTGCTTC+AGG 0.332255 2:+11682021 None:intergenic
CAAATAGAAACTTGTGTTCT+GGG 0.351766 2:-11683172 MsG0280007192.01.T01:CDS
CCAACTGTGGGATTGAATAT+TGG 0.365635 2:-11683209 MsG0280007192.01.T01:CDS
TTTGTGAAAGGAGTCTGATT+AGG 0.375210 2:-11680946 MsG0280007192.01.T01:three_prime_UTR
GTCAGAAGAAAATTTGCTTT+AGG 0.375900 2:+11681200 None:intergenic
GAAACTTGTGTTCTGGGACC+TGG 0.406883 2:-11683166 MsG0280007192.01.T01:CDS
GACTGAAATGTTGAGATTGC+GGG 0.443386 2:-11681446 MsG0280007192.01.T01:CDS
CCTGATGGATTGGTTATAAA+GGG 0.445551 2:+11681174 None:intergenic
AAACTTGTGTTCTGGGACCT+GGG 0.449231 2:-11683165 MsG0280007192.01.T01:CDS
TAACCAATCCATCAGGTGCT+TGG 0.461475 2:-11681167 MsG0280007192.01.T01:three_prime_UTR
AAATTTGCTTTAGGCGATAC+CGG 0.467539 2:+11681209 None:intergenic
CGGGCAGGTGCAATGGGTCC+AGG 0.467778 2:-11681427 MsG0280007192.01.T01:CDS
GTCATGTACACGAACGTAGA+AGG 0.472067 2:-11683254 MsG0280007192.01.T01:CDS
AGTTCTGAAGTAGTTAAACT+TGG 0.473605 2:-11680983 MsG0280007192.01.T01:three_prime_UTR
GTATCTAGATTTAAAGAAGC+TGG 0.477589 2:-11681989 MsG0280007192.01.T01:CDS
CAAAGGCTGACATAATTTCA+AGG 0.477776 2:+11681263 None:intergenic
AATCCATCAGGTGCTTGGAC+TGG 0.480934 2:-11681162 MsG0280007192.01.T01:three_prime_UTR
TTGATTCCATGTATGCTTGA+GGG 0.483579 2:-11680882 MsG0280007192.01.T01:three_prime_UTR
CTCTCTCAAGGAGTACCAAT+AGG 0.487254 2:-11680835 MsG0280007192.01.T01:three_prime_UTR
GTTCTGAAGTAGTTAAACTT+GGG 0.490488 2:-11680982 MsG0280007192.01.T01:three_prime_UTR
GAGATTGCGGGCAGGTGCAA+TGG 0.494160 2:-11681434 MsG0280007192.01.T01:CDS
CCCTTTATAACCAATCCATC+AGG 0.496606 2:-11681174 MsG0280007192.01.T01:three_prime_UTR
AGATTGCGGGCAGGTGCAAT+GGG 0.499243 2:-11681433 MsG0280007192.01.T01:CDS
CATCACTATATGAATCTGTA+TGG 0.504774 2:+11681025 None:intergenic
TTAAATCTAGAATTGACAAA+AGG 0.506300 2:+11681111 None:intergenic
TTCATACGAGGCTCAGTCTC+CGG 0.508015 2:-11681228 MsG0280007192.01.T01:three_prime_UTR
CGGGACCTCTAGGCAGGACC+TGG 0.509029 2:+11681409 None:intergenic
AGTCCAAGCACCTGATGGAT+TGG 0.509816 2:+11681164 None:intergenic
ACAGTTGGAACAATTCGATC+AGG 0.520181 2:+11683224 None:intergenic
TATGCAAAGCTATAAATGAA+TGG 0.522152 2:+11681364 None:intergenic
CCATCAGGTGCTTGGACTGG+AGG 0.525284 2:-11681159 MsG0280007192.01.T01:three_prime_UTR
GCTTGGTCTTCGCTCAATCT+GGG 0.527000 2:-11682476 MsG0280007192.01.T01:CDS
CCAATATTCAATCCCACAGT+TGG 0.529873 2:+11683209 None:intergenic
TGATGTCGGGACCTCTAGGC+AGG 0.530431 2:+11681403 None:intergenic
GAAGCCGTGTCAGCATATGA+TGG 0.535295 2:-11681946 MsG0280007192.01.T01:CDS
ATGTTGCAGGCTGGGTATCA+GGG 0.536907 2:-11681512 MsG0280007192.01.T01:intron
TTGTTTGCTAATATCAAAAG+AGG 0.540730 2:+11682187 None:intergenic
AGTTTGATGTCGGGACCTCT+AGG 0.543197 2:+11681399 None:intergenic
GAAGATGCAAAGTCTGCACT+TGG 0.546377 2:-11682388 MsG0280007192.01.T01:intron
CTATTGGTACTCCTTGAGAG+AGG 0.547001 2:+11680836 None:intergenic
TTTAGTTTAACCCTCTCTCA+AGG 0.549546 2:-11680847 MsG0280007192.01.T01:three_prime_UTR
CATCAGGTGCTTGGACTGGA+GGG 0.552733 2:-11681158 MsG0280007192.01.T01:three_prime_UTR
ATTGATTCCATGTATGCTTG+AGG 0.553026 2:-11680883 MsG0280007192.01.T01:three_prime_UTR
TGTTTGCTAATATCAAAAGA+GGG 0.557064 2:+11682188 None:intergenic
CCTCCAGTCCAAGCACCTGA+TGG 0.558466 2:+11681159 None:intergenic
GATCGAATTGTTCCAACTGT+GGG 0.562879 2:-11683221 MsG0280007192.01.T01:CDS
AGAATTGACAAAAGGATGGA+AGG 0.567370 2:+11681119 None:intergenic
ATCTAGAATTGACAAAAGGA+TGG 0.570505 2:+11681115 None:intergenic
CTTTGCATCTTCAAATCGTG+AGG 0.580336 2:+11682399 None:intergenic
GGACTGAAATGTTGAGATTG+CGG 0.582621 2:-11681447 MsG0280007192.01.T01:CDS
TTCTGAAGTAGTTAAACTTG+GGG 0.586762 2:-11680981 MsG0280007192.01.T01:three_prime_UTR
TGATCGAATTGTTCCAACTG+TGG 0.589660 2:-11683222 MsG0280007192.01.T01:CDS
AGAAAAGGTGCTTCGACATG+AGG 0.590643 2:-11682224 MsG0280007192.01.T01:CDS
TGGGTCCAGGTCCTGCCTAG+AGG 0.592022 2:-11681414 MsG0280007192.01.T01:exon
AAGCCGTGTCAGCATATGAT+GGG 0.595990 2:-11681945 MsG0280007192.01.T01:intron
GGAAAGTGCAGAATGGCTTG+TGG 0.602944 2:-11681491 MsG0280007192.01.T01:CDS
TATTGGTACTCCTTGAGAGA+GGG 0.605440 2:+11680837 None:intergenic
GTACATATAATGCTACAGAA+AGG 0.605657 2:+11681057 None:intergenic
TTTCTGATACCTGACCTCCC+AGG 0.608879 2:+11683148 None:intergenic
TATCATCTGAAGAACTAGCT+CGG 0.614679 2:-11682011 MsG0280007192.01.T01:CDS
CTGGGAGAAATATTATGAAG+AGG 0.615056 2:-11682458 MsG0280007192.01.T01:CDS
ATGAAACAGCTGAATTACAA+AGG 0.623919 2:+11681246 None:intergenic
TACAGATTCATATAGTGATG+TGG 0.624803 2:-11681022 MsG0280007192.01.T01:three_prime_UTR
TAATTCAGCTGTTTCATACG+AGG 0.630583 2:-11681240 MsG0280007192.01.T01:three_prime_UTR
TTACCCATCATATGCTGACA+CGG 0.632005 2:+11681942 None:intergenic
AAGTGATGGAGAGAAGCAAG+AGG 0.637928 2:-11681468 MsG0280007192.01.T01:CDS
CTTCGACATGAGGATCTCAA+AGG 0.639558 2:-11682214 MsG0280007192.01.T01:CDS
GAAATGTTGAGATTGCGGGC+AGG 0.639681 2:-11681442 MsG0280007192.01.T01:CDS
GTATCAGGGAAAGTGCAGAA+TGG 0.644578 2:-11681498 MsG0280007192.01.T01:CDS
GTTGGAACAATTCGATCAGG+AGG 0.646916 2:+11683227 None:intergenic
AGAATGGCTTGTGGAAGTGA+TGG 0.647620 2:-11681482 MsG0280007192.01.T01:CDS
TTTGCATCTTCAAATCGTGA+GGG 0.655285 2:+11682400 None:intergenic
GTTTGCTAATATCAAAAGAG+GGG 0.667030 2:+11682189 None:intergenic
ATTGACAAAAGGATGGAAGG+AGG 0.702875 2:+11681122 None:intergenic
CTTGTGTTCTGGGACCTGGG+AGG 0.757326 2:-11683162 MsG0280007192.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCTATAATTATGATAT+TGG - Chr2:11680928-11680947 MsG0280007192.01.T01:three_prime_UTR 10.0%
!!! GTGTTTTTTATTTTAAATAT+AGG - Chr2:11681206-11681225 MsG0280007192.01.T01:three_prime_UTR 10.0%
!!! TTGTTATTATTAATTAATGA+GGG - Chr2:11682297-11682316 MsG0280007192.01.T01:intron 10.0%
!!! TTTGTTATTATTAATTAATG+AGG - Chr2:11682296-11682315 MsG0280007192.01.T01:intron 10.0%
!! ACTAAATGTATACTTATTTA+AGG - Chr2:11681696-11681715 MsG0280007192.01.T01:intron 15.0%
!! AACATAAAAAAATAAGACCT+CGG + Chr2:11681083-11681102 None:intergenic 20.0%
!! AATCCTTATTGAAAATGAAA+TGG + Chr2:11682162-11682181 None:intergenic 20.0%
!! AATTCACTCAAATGATTAAT+GGG + Chr2:11682372-11682391 None:intergenic 20.0%
!! ATATGCATAACTATGTTATT+TGG - Chr2:11681269-11681288 MsG0280007192.01.T01:three_prime_UTR 20.0%
!! ATTAATCATTTGAGTGAATT+GGG - Chr2:11682372-11682391 MsG0280007192.01.T01:intron 20.0%
!! ATTATTAATTAATGAGGGAT+AGG - Chr2:11682302-11682321 MsG0280007192.01.T01:intron 20.0%
!! CTTATCTGATTATATGAAAA+GGG + Chr2:11681506-11681525 None:intergenic 20.0%
!! TACTTCATTATGTATCTTAA+TGG + Chr2:11682212-11682231 None:intergenic 20.0%
!! TAGAAGTCATTAAGAAAAAA+AGG - Chr2:11682710-11682729 MsG0280007192.01.T01:intron 20.0%
!! TATTGAAAATGAAATGGTAA+TGG + Chr2:11682156-11682175 None:intergenic 20.0%
!! TCTTATCTGATTATATGAAA+AGG + Chr2:11681507-11681526 None:intergenic 20.0%
!!! GATGAATTGTTAATTTGATT+TGG - Chr2:11680950-11680969 MsG0280007192.01.T01:three_prime_UTR 20.0%
!!! TTAAATCTAGAATTGACAAA+AGG + Chr2:11682921-11682940 None:intergenic 20.0%
!!! TTACCATTTCATTTTCAATA+AGG - Chr2:11682156-11682175 MsG0280007192.01.T01:intron 20.0%
! ACATAAAAAAATAAGACCTC+GGG + Chr2:11681082-11681101 None:intergenic 25.0%
! CAATTCACTCAAATGATTAA+TGG + Chr2:11682373-11682392 None:intergenic 25.0%
! CATTAATCATTTGAGTGAAT+TGG - Chr2:11682371-11682390 MsG0280007192.01.T01:intron 25.0%
! GGAAATGTATACAAAGAATT+AGG + Chr2:11682472-11682491 None:intergenic 25.0%
! TAATCATGTACTTTCCAATT+TGG + Chr2:11682692-11682711 None:intergenic 25.0%
! TATGCAAAGCTATAAATGAA+TGG + Chr2:11682668-11682687 None:intergenic 25.0%
! TCAACCTACTTTGTAATTAT+AGG + Chr2:11682345-11682364 None:intergenic 25.0%
! TGTATACTTATTTAAGGAGT+TGG - Chr2:11681702-11681721 MsG0280007192.01.T01:intron 25.0%
! TTAATCATTTGAGTGAATTG+GGG - Chr2:11682373-11682392 MsG0280007192.01.T01:intron 25.0%
!! AGGAAACCAAACATTTTATA+GGG + Chr2:11681896-11681915 None:intergenic 25.0%
!! TAATTACAAAGTAGGTTGAA+AGG - Chr2:11682346-11682365 MsG0280007192.01.T01:intron 25.0%
!! TGTTTGCTAATATCAAAAGA+GGG + Chr2:11681844-11681863 None:intergenic 25.0%
!! TTGTTTGCTAATATCAAAAG+AGG + Chr2:11681845-11681864 None:intergenic 25.0%
AAAAAAGGAGACAAACAACT+TGG - Chr2:11682725-11682744 MsG0280007192.01.T01:intron 30.0%
AAAAACACACTAAGCCAATT+AGG + Chr2:11681194-11681213 None:intergenic 30.0%
AAGGAAAAAGTGATATGAAC+TGG + Chr2:11682493-11682512 None:intergenic 30.0%
AATCAAATGTTCGTGTATAC+TGG + Chr2:11681363-11681382 None:intergenic 30.0%
ACAATGACACAGAATTTCAA+GGG + Chr2:11682426-11682445 None:intergenic 30.0%
ATAGCAAGATCAGTATAAAG+AGG + Chr2:11681475-11681494 None:intergenic 30.0%
ATGAAACAGCTGAATTACAA+AGG + Chr2:11682786-11682805 None:intergenic 30.0%
CAAATAGAAACTTGTGTTCT+GGG - Chr2:11680857-11680876 MsG0280007192.01.T01:three_prime_UTR 30.0%
CATAAAAAGGTGGAAATAGA+TGG + Chr2:11681296-11681315 None:intergenic 30.0%
CATCACTATATGAATCTGTA+TGG + Chr2:11683007-11683026 None:intergenic 30.0%
GATATGTATATGTTACTCGA+GGG - Chr2:11682255-11682274 MsG0280007192.01.T01:intron 30.0%
GTACATATAATGCTACAGAA+AGG + Chr2:11682975-11682994 None:intergenic 30.0%
GTATCTAGATTTAAAGAAGC+TGG - Chr2:11682040-11682059 MsG0280007192.01.T01:intron 30.0%
GTTGCCTATAATTACAAAGT+AGG - Chr2:11682338-11682357 MsG0280007192.01.T01:intron 30.0%
TACAGATTCATATAGTGATG+TGG - Chr2:11683007-11683026 MsG0280007192.01.T01:intron 30.0%
TAGCAAGATCAGTATAAAGA+GGG + Chr2:11681474-11681493 None:intergenic 30.0%
TGATATGTATATGTTACTCG+AGG - Chr2:11682254-11682273 MsG0280007192.01.T01:intron 30.0%
TTCAAACTTCAGCCATAAAA+AGG + Chr2:11681309-11681328 None:intergenic 30.0%
! ATAGCTTTGCATATCCAAAT+TGG - Chr2:11682675-11682694 MsG0280007192.01.T01:intron 30.0%
! ATCTAGAATTGACAAAAGGA+TGG + Chr2:11682917-11682936 None:intergenic 30.0%
! CATCTATTTCCACCTTTTTA+TGG - Chr2:11681294-11681313 MsG0280007192.01.T01:three_prime_UTR 30.0%
! GAGGAAACCAAACATTTTAT+AGG + Chr2:11681897-11681916 None:intergenic 30.0%
! GTCAGAAGAAAATTTGCTTT+AGG + Chr2:11682832-11682851 None:intergenic 30.0%
! GTTTGCTAATATCAAAAGAG+GGG + Chr2:11681843-11681862 None:intergenic 30.0%
! TCTCTGAAAAATTCTTTGGA+AGG - Chr2:11681157-11681176 MsG0280007192.01.T01:three_prime_UTR 30.0%
! TTGCTCTCTGAAAAATTCTT+TGG - Chr2:11681153-11681172 MsG0280007192.01.T01:three_prime_UTR 30.0%
!! AGTTCTGAAGTAGTTAAACT+TGG - Chr2:11683046-11683065 MsG0280007192.01.T01:intron 30.0%
!! GTTCTGAAGTAGTTAAACTT+GGG - Chr2:11683047-11683066 MsG0280007192.01.T01:intron 30.0%
!! TTCATTGACTCTAGCTTTAT+GGG - Chr2:11680985-11681004 MsG0280007192.01.T01:three_prime_UTR 30.0%
!! TTCTGAAGTAGTTAAACTTG+GGG - Chr2:11683048-11683067 MsG0280007192.01.T01:intron 30.0%
!!! TAGTCGTTTTAGTTTGATGT+CGG + Chr2:11682643-11682662 None:intergenic 30.0%
AAAATAATCCCCTAGACTAC+AGG + Chr2:11682449-11682468 None:intergenic 35.0%
AAACTTCAGCCATAAAAAGG+TGG + Chr2:11681306-11681325 None:intergenic 35.0%
AAATAGGATCACAACAAACG+AGG + Chr2:11681916-11681935 None:intergenic 35.0%
ACACTAAGCCAATTAGGTTA+GGG + Chr2:11681188-11681207 None:intergenic 35.0%
ACACTTGTAGTATCAGGAAT+AGG - Chr2:11681417-11681436 MsG0280007192.01.T01:CDS 35.0%
ACTGATCTGTTTACCAGAAA+AGG - Chr2:11681790-11681809 MsG0280007192.01.T01:intron 35.0%
AGAATTGACAAAAGGATGGA+AGG + Chr2:11682913-11682932 None:intergenic 35.0%
CAAAGGCTGACATAATTTCA+AGG + Chr2:11682769-11682788 None:intergenic 35.0%
CTGAACATTCTTCTTATTGC+AGG - Chr2:11681980-11681999 MsG0280007192.01.T01:CDS 35.0%
CTGGGAGAAATATTATGAAG+AGG - Chr2:11681571-11681590 MsG0280007192.01.T01:intron 35.0%
GACAATGACACAGAATTTCA+AGG + Chr2:11682427-11682446 None:intergenic 35.0%
GCAAATAGAAACTTGTGTTC+TGG - Chr2:11680856-11680875 MsG0280007192.01.T01:three_prime_UTR 35.0%
GTGTTAATACACACCAAAGA+GGG + Chr2:11681945-11681964 None:intergenic 35.0%
GTTTCTACATTCTGTCCTAT+TGG + Chr2:11683212-11683231 None:intergenic 35.0%
TATCATCTGAAGAACTAGCT+CGG - Chr2:11682018-11682037 MsG0280007192.01.T01:CDS 35.0%
TCTATATTACATAGTTCCCG+AGG - Chr2:11681063-11681082 MsG0280007192.01.T01:three_prime_UTR 35.0%
TGTGTTAATACACACCAAAG+AGG + Chr2:11681946-11681965 None:intergenic 35.0%
TTGATTCCATGTATGCTTGA+GGG - Chr2:11683147-11683166 MsG0280007192.01.T01:intron 35.0%
TTTGCATCTTCAAATCGTGA+GGG + Chr2:11681632-11681651 None:intergenic 35.0%
TTTGTGAAAGGAGTCTGATT+AGG - Chr2:11683083-11683102 MsG0280007192.01.T01:intron 35.0%
! AAATTTGCTTTAGGCGATAC+CGG + Chr2:11682823-11682842 None:intergenic 35.0%
! AACCAAACATTTTATAGGGC+AGG + Chr2:11681892-11681911 None:intergenic 35.0%
! ACCAAACATTTTATAGGGCA+GGG + Chr2:11681891-11681910 None:intergenic 35.0%
! ATTGATTCCATGTATGCTTG+AGG - Chr2:11683146-11683165 MsG0280007192.01.T01:intron 35.0%
! TAATTCAGCTGTTTCATACG+AGG - Chr2:11682789-11682808 MsG0280007192.01.T01:intron 35.0%
! TGTAGCTGAACTTTTGTGAA+AGG - Chr2:11683071-11683090 MsG0280007192.01.T01:intron 35.0%
! TTTAGTTTAACCCTCTCTCA+AGG - Chr2:11683182-11683201 MsG0280007192.01.T01:CDS 35.0%
! TTTTTCCTTTGACATGTTGC+AGG - Chr2:11682504-11682523 MsG0280007192.01.T01:intron 35.0%
!! AAATGGTAATGGATCAACAC+AGG + Chr2:11682145-11682164 None:intergenic 35.0%
!! ACCTGATGGATTGGTTATAA+AGG + Chr2:11682859-11682878 None:intergenic 35.0%
!! CCTGATGGATTGGTTATAAA+GGG + Chr2:11682858-11682877 None:intergenic 35.0%
!! GTTCATTGACTCTAGCTTTA+TGG - Chr2:11680984-11681003 MsG0280007192.01.T01:three_prime_UTR 35.0%
!!! AGTCGTTTTAGTTTGATGTC+GGG + Chr2:11682642-11682661 None:intergenic 35.0%
!!! TTTTTTCCCTCAAGCATACA+TGG + Chr2:11683156-11683175 None:intergenic 35.0%
ACAGTTGGAACAATTCGATC+AGG + Chr2:11680808-11680827 None:intergenic 40.0%
AGATCAGTATAAAGAGGGTC+AGG + Chr2:11681469-11681488 None:intergenic 40.0%
ATTGACAAAAGGATGGAAGG+AGG + Chr2:11682910-11682929 None:intergenic 40.0%
CACACTAAGCCAATTAGGTT+AGG + Chr2:11681189-11681208 None:intergenic 40.0%
CAGGAATAGGATGCATCATT+TGG - Chr2:11681430-11681449 MsG0280007192.01.T01:CDS 40.0%
CCAAAGAGGGCGAAAAAAAT+AGG + Chr2:11681932-11681951 None:intergenic 40.0%
CCAACTGTGGGATTGAATAT+TGG - Chr2:11680820-11680839 MsG0280007192.01.T01:three_prime_UTR 40.0%
CCAATATTCAATCCCACAGT+TGG + Chr2:11680823-11680842 None:intergenic 40.0%
CCCTTTATAACCAATCCATC+AGG - Chr2:11682855-11682874 MsG0280007192.01.T01:intron 40.0%
CTTTGCATCTTCAAATCGTG+AGG + Chr2:11681633-11681652 None:intergenic 40.0%
GACTGAAATGTTGAGATTGC+GGG - Chr2:11682583-11682602 MsG0280007192.01.T01:intron 40.0%
GATCGAATTGTTCCAACTGT+GGG - Chr2:11680808-11680827 MsG0280007192.01.T01:three_prime_UTR 40.0%
GGACTGAAATGTTGAGATTG+CGG - Chr2:11682582-11682601 MsG0280007192.01.T01:intron 40.0%
GGTGTGTATTAACACAGTGA+TGG - Chr2:11681950-11681969 MsG0280007192.01.T01:CDS 40.0%
TATTGGTACTCCTTGAGAGA+GGG + Chr2:11683195-11683214 None:intergenic 40.0%
TCCCTGCCCTATAAAATGTT+TGG - Chr2:11681887-11681906 MsG0280007192.01.T01:intron 40.0%
TCTTCAGATGATACTGCTTC+AGG + Chr2:11682011-11682030 None:intergenic 40.0%
TGATCGAATTGTTCCAACTG+TGG - Chr2:11680807-11680826 MsG0280007192.01.T01:three_prime_UTR 40.0%
TGTCATTGTCCTGTAGTCTA+GGG - Chr2:11682437-11682456 MsG0280007192.01.T01:CDS 40.0%
TTACCCATCATATGCTGACA+CGG + Chr2:11682090-11682109 None:intergenic 40.0%
!!! CCTATTTTTTTCGCCCTCTT+TGG - Chr2:11681929-11681948 MsG0280007192.01.T01:intron 40.0%
AAGCCGTGTCAGCATATGAT+GGG - Chr2:11682084-11682103 MsG0280007192.01.T01:intron 45.0%
AATTTCCCCGCTTATCAGCT+TGG - Chr2:11681536-11681555 MsG0280007192.01.T01:intron 45.0%
AGGCTACTCCCTAACCTAAT+TGG - Chr2:11681177-11681196 MsG0280007192.01.T01:three_prime_UTR 45.0%
CTATTGGTACTCCTTGAGAG+AGG + Chr2:11683196-11683215 None:intergenic 45.0%
CTTCGACATGAGGATCTCAA+AGG - Chr2:11681815-11681834 MsG0280007192.01.T01:intron 45.0%
GAAGATGCAAAGTCTGCACT+TGG - Chr2:11681641-11681660 MsG0280007192.01.T01:intron 45.0%
GTCATTGTCCTGTAGTCTAG+GGG - Chr2:11682438-11682457 MsG0280007192.01.T01:CDS 45.0%
GTTGGAACAATTCGATCAGG+AGG + Chr2:11680805-11680824 None:intergenic 45.0%
TAAAGAGGGTCAGGTATGAG+AGG + Chr2:11681460-11681479 None:intergenic 45.0%
TAACCAATCCATCAGGTGCT+TGG - Chr2:11682862-11682881 MsG0280007192.01.T01:intron 45.0%
TCCTGATACTACAAGTGTGC+AGG + Chr2:11681415-11681434 None:intergenic 45.0%
TTGAGTGAATTGGGGCCTTT+GGG - Chr2:11682381-11682400 MsG0280007192.01.T01:intron 45.0%
TTTGAGTGAATTGGGGCCTT+TGG - Chr2:11682380-11682399 MsG0280007192.01.T01:intron 45.0%
! AAGTGATGGAGAGAAGCAAG+AGG - Chr2:11682561-11682580 MsG0280007192.01.T01:intron 45.0%
! AGAATGGCTTGTGGAAGTGA+TGG - Chr2:11682547-11682566 MsG0280007192.01.T01:intron 45.0%
! GTATCAGGGAAAGTGCAGAA+TGG - Chr2:11682531-11682550 MsG0280007192.01.T01:intron 45.0%
! GTGTCATTGTCCTGTAGTCT+AGG - Chr2:11682436-11682455 MsG0280007192.01.T01:CDS 45.0%
!! AAACTTGTGTTCTGGGACCT+GGG - Chr2:11680864-11680883 MsG0280007192.01.T01:three_prime_UTR 45.0%
!! AGAAAAGGTGCTTCGACATG+AGG - Chr2:11681805-11681824 MsG0280007192.01.T01:intron 45.0%
!! CTCTCTCAAGGAGTACCAAT+AGG - Chr2:11683194-11683213 MsG0280007192.01.T01:CDS 45.0%
!! GCATATGATGGGTAAGTGAG+AGG - Chr2:11682095-11682114 MsG0280007192.01.T01:intron 45.0%
!! TCATGTCGAAGCACCTTTTC+TGG + Chr2:11681806-11681825 None:intergenic 45.0%
!!! TAAATTTAATTTATTCAAAT+AGG + Chr2:11682947-11682966 None:intergenic 5.0%
AATCCATCAGGTGCTTGGAC+TGG - Chr2:11682867-11682886 MsG0280007192.01.T01:intron 50.0%
AGTTTGATGTCGGGACCTCT+AGG + Chr2:11682633-11682652 None:intergenic 50.0%
ATGTTGCAGGCTGGGTATCA+GGG - Chr2:11682517-11682536 MsG0280007192.01.T01:intron 50.0%
CCTTTGACATGTTGCAGGCT+GGG - Chr2:11682509-11682528 MsG0280007192.01.T01:intron 50.0%
CGAAGACCAAGCTGATAAGC+GGG + Chr2:11681545-11681564 None:intergenic 50.0%
GAAATGTTGAGATTGCGGGC+AGG - Chr2:11682587-11682606 MsG0280007192.01.T01:intron 50.0%
GAAGACCAAGCTGATAAGCG+GGG + Chr2:11681544-11681563 None:intergenic 50.0%
GAAGCCGTGTCAGCATATGA+TGG - Chr2:11682083-11682102 MsG0280007192.01.T01:intron 50.0%
GCCTGCACACTTGTAGTATC+AGG - Chr2:11681411-11681430 MsG0280007192.01.T01:exon 50.0%
GCGAAGACCAAGCTGATAAG+CGG + Chr2:11681546-11681565 None:intergenic 50.0%
TCCTTTGACATGTTGCAGGC+TGG - Chr2:11682508-11682527 MsG0280007192.01.T01:intron 50.0%
TTCATACGAGGCTCAGTCTC+CGG - Chr2:11682801-11682820 MsG0280007192.01.T01:intron 50.0%
TTTCTGATACCTGACCTCCC+AGG + Chr2:11680884-11680903 None:intergenic 50.0%
! AGCTTGGTCTTCGCTCAATC+TGG - Chr2:11681552-11681571 MsG0280007192.01.T01:intron 50.0%
! AGTCCAAGCACCTGATGGAT+TGG + Chr2:11682868-11682887 None:intergenic 50.0%
! GCTTGGTCTTCGCTCAATCT+GGG - Chr2:11681553-11681572 MsG0280007192.01.T01:intron 50.0%
! GGAAAGTGCAGAATGGCTTG+TGG - Chr2:11682538-11682557 MsG0280007192.01.T01:intron 50.0%
!! GAAACTTGTGTTCTGGGACC+TGG - Chr2:11680863-11680882 MsG0280007192.01.T01:three_prime_UTR 50.0%
AGATTGCGGGCAGGTGCAAT+GGG - Chr2:11682596-11682615 MsG0280007192.01.T01:intron 55.0%
CATGTTGCAGGCTGGGTATC+AGG - Chr2:11682516-11682535 MsG0280007192.01.T01:intron 55.0%
CCCAGCCTGCAACATGTCAA+AGG + Chr2:11682512-11682531 None:intergenic 55.0%
! CATCAGGTGCTTGGACTGGA+GGG - Chr2:11682871-11682890 MsG0280007192.01.T01:intron 55.0%
CCTCCAGTCCAAGCACCTGA+TGG + Chr2:11682873-11682892 None:intergenic 60.0%
GAGATTGCGGGCAGGTGCAA+TGG - Chr2:11682595-11682614 MsG0280007192.01.T01:intron 60.0%
TGATGTCGGGACCTCTAGGC+AGG + Chr2:11682629-11682648 None:intergenic 60.0%
TGCCCCCTCTCAATGCCCAA+AGG + Chr2:11682399-11682418 None:intergenic 60.0%
! CCATCAGGTGCTTGGACTGG+AGG - Chr2:11682870-11682889 MsG0280007192.01.T01:intron 60.0%
!! CTTGTGTTCTGGGACCTGGG+AGG - Chr2:11680867-11680886 MsG0280007192.01.T01:three_prime_UTR 60.0%
!! GGCCTTTGGGCATTGAGAGG+GGG - Chr2:11682394-11682413 MsG0280007192.01.T01:CDS 60.0%
!! GGGCCTTTGGGCATTGAGAG+GGG - Chr2:11682393-11682412 MsG0280007192.01.T01:CDS 60.0%
!! GGGGCCTTTGGGCATTGAGA+GGG - Chr2:11682392-11682411 MsG0280007192.01.T01:CDS 60.0%
!! TGGGGCCTTTGGGCATTGAG+AGG - Chr2:11682391-11682410 MsG0280007192.01.T01:CDS 60.0%
TGGGTCCAGGTCCTGCCTAG+AGG - Chr2:11682615-11682634 MsG0280007192.01.T01:intron 65.0%
!! GTTCTGGGACCTGGGAGGTC+AGG - Chr2:11680872-11680891 MsG0280007192.01.T01:three_prime_UTR 65.0%
CGGGACCTCTAGGCAGGACC+TGG + Chr2:11682623-11682642 None:intergenic 70.0%
CGGGCAGGTGCAATGGGTCC+AGG - Chr2:11682602-11682621 MsG0280007192.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 11680778 11683273 11680778 ID=MsG0280007192.01;Name=MsG0280007192.01
Chr2 mRNA 11680778 11683273 11680778 ID=MsG0280007192.01.T01;Parent=MsG0280007192.01;Name=MsG0280007192.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0.75|0.8|1|1|1|5|639|164
Chr2 exon 11680778 11681525 11680778 ID=MsG0280007192.01.T01:exon:389;Parent=MsG0280007192.01.T01
Chr2 exon 11681946 11682049 11681946 ID=MsG0280007192.01.T01:exon:388;Parent=MsG0280007192.01.T01
Chr2 exon 11682183 11682244 11682183 ID=MsG0280007192.01.T01:exon:387;Parent=MsG0280007192.01.T01
Chr2 exon 11682389 11682497 11682389 ID=MsG0280007192.01.T01:exon:386;Parent=MsG0280007192.01.T01
Chr2 exon 11683163 11683273 11683163 ID=MsG0280007192.01.T01:exon:385;Parent=MsG0280007192.01.T01
Chr2 CDS 11683163 11683273 11683163 ID=MsG0280007192.01.T01:cds;Parent=MsG0280007192.01.T01
Chr2 CDS 11682389 11682497 11682389 ID=MsG0280007192.01.T01:cds;Parent=MsG0280007192.01.T01
Chr2 CDS 11682183 11682244 11682183 ID=MsG0280007192.01.T01:cds;Parent=MsG0280007192.01.T01
Chr2 CDS 11681946 11682049 11681946 ID=MsG0280007192.01.T01:cds;Parent=MsG0280007192.01.T01
Chr2 CDS 11681417 11681525 11681417 ID=MsG0280007192.01.T01:cds;Parent=MsG0280007192.01.T01
Chr2 three_prime_UTR 11680778 11681416 11680778 ID=MsG0280007192.01.T01:three_prime_utr;Parent=MsG0280007192.01.T01
Gene Sequence

>MsG0280007192.01.T01

ATGTACACGAACGTAGAAGGTCTTCCTCCTGATCGAATTGTTCCAACTGTGGGATTGAATATTGGTCGAATTGAAGTTGCAAATAGAAACTTGTGTTCTGGGACCTGGGAGCTTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAGGCACACGCTGTTGTATTTGTTATAGATGCATCTTGTCCCTCACGATTTGAAGATGCAAAGTCTGCACTTGAAAAGGTGCTTCGACATGAGGATCTCAAAGGAGCCCCTCTTTTGATATTAGCAAACAAGCAAGATCTTCCTGAAGCAGTATCATCTGAAGAACTAGCTCGGTATCTAGATTTAAAGAAGCTGGACGAAAGAGTCTACTTGTTTGAAGCCGTGTCAGCATATGATGGGCTGGGTATCAGGGAAAGTGCAGAATGGCTTGTGGAAGTGATGGAGAGAAGCAAGAGGACTGAAATGTTGAGATTGCGGGCAGGTGCAATGGGTCCAGGTCCTGCCTAG
Protein sequence

>MsG0280007192.01.T01

MYTNVEGLPPDRIVPTVGLNIGRIEVANRNLCSGTWELGLRSIWEKYYEEAHAVVFVIDASCPSRFEDAKSALEKVLRHEDLKGAPLLILANKQDLPEAVSSEELARYLDLKKLDERVYLFEAVSAYDGLGIRESAEWLVEVMERSKRTEMLRLRAGAMGPGPA*