AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028918.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028918.01.T01 MTR_5g078090 91.304 184 0 1 1 168 1 184 1.25e-117 330
MsG0580028918.01.T01 MTR_5g015370 75.275 182 29 1 1 166 1 182 4.04e-97 278
MsG0580028918.01.T01 MTR_4g026950 68.485 165 36 1 20 168 1 165 9.98e-79 231
MsG0580028918.01.T01 MTR_1g086480 32.955 176 99 3 1 160 1 173 4.96e-23 90.5
MsG0580028918.01.T01 MTR_7g109960 32.955 176 99 3 1 160 1 173 5.06e-23 90.1
MsG0580028918.01.T01 MTR_5g034130 32.386 176 100 3 1 160 1 173 1.24e-22 89.4
MsG0580028918.01.T01 MTR_5g034125 32.386 176 100 3 1 160 1 173 1.24e-22 89.4
MsG0580028918.01.T01 MTR_6g005820 32.386 176 100 3 1 160 1 173 1.28e-22 89.4
MsG0580028918.01.T01 MTR_5g016540 32.530 166 95 2 11 160 9 173 1.53e-22 89.0
MsG0580028918.01.T01 MTR_4g128910 31.928 166 96 2 11 160 9 173 1.97e-22 89.0
MsG0580028918.01.T01 MTR_5g007820 33.103 145 78 2 13 139 11 154 1.24e-18 79.0
MsG0580028918.01.T01 MTR_4g077640 32.168 143 80 2 13 139 11 152 1.44e-18 79.0
MsG0580028918.01.T01 MTR_2g022200 29.508 183 100 4 2 162 7 182 2.16e-18 79.0
MsG0580028918.01.T01 MTR_1g076550 33.099 142 78 2 14 139 12 152 1.33e-17 76.3
MsG0580028918.01.T01 MTR_5g007810 30.070 143 83 2 13 139 11 152 1.57e-17 76.3
MsG0580028918.01.T01 MTR_8g077540 30.435 161 92 4 20 162 17 175 6.72e-16 71.6
MsG0580028918.01.T01 MTR_8g077540 30.435 161 92 4 20 162 43 201 1.81e-15 71.2
MsG0580028918.01.T01 MTR_4g121860 33.333 135 73 3 17 135 18 151 1.96e-15 70.9
MsG0580028918.01.T01 MTR_7g112090 31.333 150 81 4 7 135 3 151 1.60e-14 68.2
MsG0580028918.01.T01 MTR_2g034640 32.886 149 82 4 1 132 1 148 1.87e-14 68.2
MsG0580028918.01.T01 MTR_5g007840 31.159 138 89 3 13 145 11 147 8.01e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028918.01.T01 AT5G37680 85.246 183 11 1 1 167 1 183 2.28e-112 317
MsG0580028918.01.T01 AT5G67560 73.370 184 33 1 1 168 1 184 4.38e-96 276
MsG0580028918.01.T01 AT3G49870 72.283 184 35 1 1 168 1 184 1.34e-93 270
MsG0580028918.01.T01 AT3G49870 71.515 165 31 1 20 168 1 165 7.31e-81 237
MsG0580028918.01.T01 AT5G37680 80.292 137 11 1 48 168 1 137 3.59e-76 224
MsG0580028918.01.T01 AT3G49860 62.874 167 46 1 18 168 10 176 1.22e-69 209
MsG0580028918.01.T01 AT1G10630 32.955 176 99 3 1 160 1 173 5.54e-23 90.1
MsG0580028918.01.T01 AT1G10630 32.955 176 99 3 1 160 1 173 5.54e-23 90.1
MsG0580028918.01.T01 AT1G70490 32.955 176 99 3 1 160 1 173 5.90e-23 90.1
MsG0580028918.01.T01 AT1G70490 32.955 176 99 3 1 160 1 173 5.90e-23 90.1
MsG0580028918.01.T01 AT1G70490 32.955 176 99 3 1 160 1 173 5.90e-23 90.1
MsG0580028918.01.T01 AT1G70490 32.955 176 99 3 1 160 1 173 5.90e-23 90.1
MsG0580028918.01.T01 AT1G70490 32.955 176 99 3 1 160 1 173 5.90e-23 90.1
MsG0580028918.01.T01 AT1G70490 32.955 176 99 3 1 160 1 173 5.90e-23 90.1
MsG0580028918.01.T01 AT1G23490 32.955 176 99 3 1 160 1 173 5.90e-23 90.1
MsG0580028918.01.T01 AT1G70490 32.955 176 99 3 1 160 1 173 5.90e-23 90.1
MsG0580028918.01.T01 AT3G62290 32.955 176 99 3 1 160 1 173 1.11e-22 89.4
MsG0580028918.01.T01 AT3G62290 32.955 176 99 3 1 160 1 173 1.11e-22 89.4
MsG0580028918.01.T01 AT3G62290 32.955 176 99 3 1 160 1 173 1.11e-22 89.4
MsG0580028918.01.T01 AT2G47170 32.955 176 99 3 1 160 1 173 1.33e-22 89.4
MsG0580028918.01.T01 AT2G47170 32.955 176 99 3 1 160 1 173 1.33e-22 89.4
MsG0580028918.01.T01 AT2G47170 32.955 176 99 3 1 160 1 173 1.33e-22 89.4
MsG0580028918.01.T01 AT5G14670 33.129 163 92 2 14 160 12 173 1.37e-22 89.4
MsG0580028918.01.T01 AT5G14670 33.129 163 92 2 14 160 12 173 1.37e-22 89.4
MsG0580028918.01.T01 AT5G14670 33.129 163 92 2 14 160 12 173 1.83e-22 89.0
MsG0580028918.01.T01 AT2G24765 30.120 166 99 2 11 160 9 173 7.28e-21 84.7
MsG0580028918.01.T01 AT5G17060 32.168 143 80 2 13 139 11 152 1.61e-19 81.6
MsG0580028918.01.T01 AT5G17060 32.168 143 80 2 13 139 11 152 1.61e-19 81.6
MsG0580028918.01.T01 AT3G03120 31.469 143 81 2 13 139 11 152 9.12e-19 79.7
MsG0580028918.01.T01 AT5G52210 30.220 182 98 3 2 161 7 181 1.46e-18 79.3
MsG0580028918.01.T01 AT5G52210 30.220 182 98 3 2 161 7 181 1.46e-18 79.3
MsG0580028918.01.T01 AT2G15310 28.947 152 88 3 17 152 15 162 6.00e-17 75.1
MsG0580028918.01.T01 AT3G22950 31.690 142 80 2 14 139 12 152 1.59e-16 73.6
MsG0580028918.01.T01 AT3G22950 31.690 142 80 2 14 139 12 152 1.59e-16 73.6
MsG0580028918.01.T01 AT2G24765 31.667 120 65 2 11 114 9 127 1.01e-15 70.1
MsG0580028918.01.T01 AT3G03120 31.667 120 65 2 13 116 11 129 2.85e-15 68.9
MsG0580028918.01.T01 AT1G09180 34.211 152 82 4 1 135 1 151 1.10e-14 68.9
MsG0580028918.01.T01 AT3G62560 31.333 150 81 4 7 135 3 151 1.94e-14 68.2
MsG0580028918.01.T01 AT4G02080 32.593 135 74 3 17 135 18 151 3.81e-14 67.4
MsG0580028918.01.T01 AT1G56330 32.237 152 85 4 1 135 1 151 4.31e-14 67.4
MsG0580028918.01.T01 AT1G02430 25.424 177 107 4 14 165 12 188 5.33e-13 64.3
MsG0580028918.01.T01 AT1G02440 26.111 180 108 4 11 165 9 188 7.82e-13 63.9
MsG0580028918.01.T01 AT1G02430 26.027 146 87 2 14 138 12 157 8.48e-13 63.2
MsG0580028918.01.T01 AT1G02440 25.781 128 76 1 11 138 9 117 7.63e-12 59.7

Find 54 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATTCACTTCGAGTTAT+TGG 0.140016 5:+88669783 None:intergenic
CTTGATATTGTACCAAGTTT+TGG 0.243962 5:-88669269 MsG0580028918.01.T01:three_prime_UTR
GGGATTCCTTTGCTTGTTCT+TGG 0.246105 5:-88669732 MsG0580028918.01.T01:CDS
ACAATAAAGCTTTGGGATCT+TGG 0.278062 5:-88673411 MsG0580028918.01.T01:CDS
ATGGAAGATTTGACCAAGTT+TGG 0.317834 5:+88669318 None:intergenic
AAGCAATTTGTTTAAATTGT+TGG 0.329015 5:+88669103 None:intergenic
TCTGGGATTCTCTTCTCAAT+TGG 0.329088 5:-88674126 MsG0580028918.01.T01:CDS
ATTCTCAACGAATGGGTCTC+TGG 0.331521 5:-88674144 MsG0580028918.01.T01:exon
TTGACCCACAACTAAAATTA+AGG 0.339003 5:+88669362 None:intergenic
AACTATTTCCTTCCAAGTTA+AGG 0.346890 5:+88669080 None:intergenic
AACAAATTGCTTCCTTAACT+TGG 0.367402 5:-88669092 MsG0580028918.01.T01:three_prime_UTR
GAAATGTCACAATAAAGCTT+TGG 0.389200 5:-88673419 MsG0580028918.01.T01:CDS
ACATTCCACAAACCATTCAT+TGG 0.393712 5:-88674201 MsG0580028918.01.T01:five_prime_UTR
CTGACCAAACCTTCCTTGAA+TGG 0.415538 5:-88669753 MsG0580028918.01.T01:CDS
TTGATCTACCAATGCTTGCT+TGG 0.418148 5:+88669680 None:intergenic
AAATGTCACAATAAAGCTTT+GGG 0.418458 5:-88673418 MsG0580028918.01.T01:CDS
CTCTTCTCAATTGGCTCCGC+AGG 0.421148 5:-88674117 MsG0580028918.01.T01:intron
AATCCCATTCAAGGAAGGTT+TGG 0.436571 5:+88669749 None:intergenic
AGCGACCAATGAATGGTTTG+TGG 0.443931 5:+88674196 None:intergenic
GAGATGGAGCTGTCTCTTGT+AGG 0.450824 5:-88673761 MsG0580028918.01.T01:CDS
TTCATTCATTCTCAACGAAT+GGG 0.454292 5:-88674151 MsG0580028918.01.T01:exon
TGACCAAACCTTCCTTGAAT+GGG 0.458229 5:-88669752 MsG0580028918.01.T01:CDS
GAATGGTTTGTGGAATGTTA+AGG 0.461935 5:+88674206 None:intergenic
ATTCATTCATTCTCAACGAA+TGG 0.471266 5:-88674152 MsG0580028918.01.T01:exon
AAACTTTAGCGACCAATGAA+TGG 0.477552 5:+88674189 None:intergenic
AATTGCTTCCTTAACTTGGA+AGG 0.480342 5:-88669088 MsG0580028918.01.T01:three_prime_UTR
TGAATGAATAGGAAGAAAGA+AGG 0.481022 5:+88674166 None:intergenic
AACAGAAACCATCCAAAACT+TGG 0.482714 5:+88669257 None:intergenic
TTCTCAACGAATGGGTCTCT+GGG 0.483857 5:-88674143 MsG0580028918.01.T01:exon
CATTCAAGGAAGGTTTGGTC+AGG 0.486407 5:+88669754 None:intergenic
TTCGTTGAGAATGAATGAAT+AGG 0.491404 5:+88674155 None:intergenic
CTTGTAGGTCTTCAGAATGC+TGG 0.494726 5:-88673746 MsG0580028918.01.T01:CDS
TTGCTACATGATTTCATGCA+AGG 0.505231 5:-88669487 MsG0580028918.01.T01:CDS
AAGCAAAGGAATCCCATTCA+AGG 0.513568 5:+88669740 None:intergenic
AGCTCTTTCCAAGCAAGCAT+TGG 0.513878 5:-88669688 MsG0580028918.01.T01:CDS
ACATAGATGTGGTCATCGAC+TGG 0.530688 5:-88669455 MsG0580028918.01.T01:CDS
TTTGGGATCTTGGTGGTCAA+CGG 0.548867 5:-88673401 MsG0580028918.01.T01:CDS
TTGTGGAATGTTAAGGAAGG+AGG 0.549544 5:+88674213 None:intergenic
TTGTGTACAGTAACCAAACT+TGG 0.550375 5:-88669331 MsG0580028918.01.T01:three_prime_UTR
ATAAAGCTTTGGGATCTTGG+TGG 0.559424 5:-88673408 MsG0580028918.01.T01:CDS
AATATGCGAAAAGTGACAAA+GGG 0.561008 5:-88673441 MsG0580028918.01.T01:CDS
AGTAAGATGTTGATACGATA+CGG 0.569381 5:+88674253 None:intergenic
TTGTTTCCAAGAACAAGCAA+AGG 0.570676 5:+88669726 None:intergenic
GTCTATGCATTACACTGGAA+AGG 0.572286 5:+88669384 None:intergenic
TTTACTCAAGAAACATTGCA+TGG 0.572723 5:+88669299 None:intergenic
GTATTATTGTGATCTAAATG+TGG 0.574237 5:-88669187 MsG0580028918.01.T01:three_prime_UTR
TTAAGGTCTATGCATTACAC+TGG 0.574461 5:+88669379 None:intergenic
AAAGGAATCCCATTCAAGGA+AGG 0.597544 5:+88669744 None:intergenic
CAATATGCGAAAAGTGACAA+AGG 0.599692 5:-88673442 MsG0580028918.01.T01:CDS
GGTTTGTGGAATGTTAAGGA+AGG 0.600095 5:+88674210 None:intergenic
GGGATCTTGGTGGTCAACGG+AGG 0.604641 5:-88673398 MsG0580028918.01.T01:intron
TAGATTCACACACAAAACAA+AGG 0.655224 5:-88674328 MsG0580028918.01.T01:five_prime_UTR
GGATTCTGTAAACATAGATG+TGG 0.658596 5:-88669466 MsG0580028918.01.T01:CDS
TGAGTCAATTAAAGACAGAG+AGG 0.706022 5:-88669514 MsG0580028918.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACAATAAAAAAAACAT+GGG + Chr5:88670392-88670411 None:intergenic 10.0%
!! TTCATTTGTTTAAAAATATT+TGG - Chr5:88674203-88674222 MsG0580028918.01.T01:five_prime_UTR 10.0%
!! AAAGAAATAAGAATAAAGAA+AGG + Chr5:88669334-88669353 None:intergenic 15.0%
!! AAATTCATACAAAATTACTT+GGG + Chr5:88669574-88669593 None:intergenic 15.0%
!! AAATTTGAATTCAGAATTTA+AGG - Chr5:88669892-88669911 MsG0580028918.01.T01:intron 15.0%
!! CATAAACAATAAAAAAAACA+TGG + Chr5:88670393-88670412 None:intergenic 15.0%
!! TAACATAGAATTTAAATGTT+GGG - Chr5:88670517-88670536 MsG0580028918.01.T01:intron 15.0%
!!! GTATATAGTTAATGTTTTTT+GGG - Chr5:88670188-88670207 MsG0580028918.01.T01:intron 15.0%
!!! TAATTTTAACTCATTATTAC+TGG - Chr5:88669743-88669762 MsG0580028918.01.T01:CDS 15.0%
!!! TCTCTTTATTTGTATATAAA+GGG - Chr5:88671017-88671036 MsG0580028918.01.T01:intron 15.0%
!!! TGTATATAGTTAATGTTTTT+TGG - Chr5:88670187-88670206 MsG0580028918.01.T01:intron 15.0%
!!! TTCTCTTTATTTGTATATAA+AGG - Chr5:88671016-88671035 MsG0580028918.01.T01:intron 15.0%
!! ACAAGTTAAGAATCTAAAAA+TGG - Chr5:88670236-88670255 MsG0580028918.01.T01:intron 20.0%
!! ATCATATGATATATAGTAAC+TGG + Chr5:88669403-88669422 None:intergenic 20.0%
!! CAAATTCATACAAAATTACT+TGG + Chr5:88669575-88669594 None:intergenic 20.0%
!! GATTAGGATTTAATAATAAG+AGG - Chr5:88670968-88670987 MsG0580028918.01.T01:intron 20.0%
!! GTAACATAGAATTTAAATGT+TGG - Chr5:88670516-88670535 MsG0580028918.01.T01:intron 20.0%
!! GTTCAAACATAGAAATATAA+AGG - Chr5:88673205-88673224 MsG0580028918.01.T01:intron 20.0%
!! TAAAGATAAAGTTACCTTAT+TGG + Chr5:88672404-88672423 None:intergenic 20.0%
!! TAATTAGTAAGTAGTTAGTT+AGG - Chr5:88670913-88670932 MsG0580028918.01.T01:intron 20.0%
!! TATAGATGATTATTAGTGTT+AGG - Chr5:88670865-88670884 MsG0580028918.01.T01:intron 20.0%
!! TTAAGTAGATTATTAGTAAG+TGG - Chr5:88670937-88670956 MsG0580028918.01.T01:intron 20.0%
!! TTACTCTAATACAAATTTAG+AGG + Chr5:88669488-88669507 None:intergenic 20.0%
!! TTATTAAATCCTAATCCTAA+CGG + Chr5:88670964-88670983 None:intergenic 20.0%
!! TTTATTATAAACCCTATAGT+TGG - Chr5:88670791-88670810 MsG0580028918.01.T01:intron 20.0%
!! TTTATTATCAAGATGTTGAT+TGG - Chr5:88673160-88673179 MsG0580028918.01.T01:intron 20.0%
!!! AAGCAATTTGTTTAAATTGT+TGG + Chr5:88674312-88674331 None:intergenic 20.0%
!!! ACAATAATGATGATGATTTT+CGG + Chr5:88673783-88673802 None:intergenic 20.0%
!!! AGACTTTTATTGAACAATTT+TGG - Chr5:88673235-88673254 MsG0580028918.01.T01:intron 20.0%
!!! AGTTATGTTTTTATTACGTA+AGG + Chr5:88673413-88673432 None:intergenic 20.0%
!!! ATCTTGATAATAAAAAACAG+TGG + Chr5:88673154-88673173 None:intergenic 20.0%
!!! CAAAAATAGAAACATTTTGT+TGG + Chr5:88670330-88670349 None:intergenic 20.0%
!!! CAACAAAATGTTTCTATTTT+TGG - Chr5:88670328-88670347 MsG0580028918.01.T01:intron 20.0%
!!! CTCTTTATTTGTATATAAAG+GGG - Chr5:88671018-88671037 MsG0580028918.01.T01:intron 20.0%
!!! CTTATTTTTTAAACAAGAGA+TGG - Chr5:88669635-88669654 MsG0580028918.01.T01:intron 20.0%
!!! TTTTATGAATAAACAGAGAA+AGG + Chr5:88673378-88673397 None:intergenic 20.0%
! AAAAGCTAACAATTCTTCAA+AGG + Chr5:88671994-88672013 None:intergenic 25.0%
! AAAATTGCGAATAACCAAAT+TGG + Chr5:88669515-88669534 None:intergenic 25.0%
! AAAGCTAACAATTCTTCAAA+GGG + Chr5:88671993-88672012 None:intergenic 25.0%
! AAAGTAAAGATACTTACAGT+TGG + Chr5:88669866-88669885 None:intergenic 25.0%
! AAATGTCACAATAAAGCTTT+GGG - Chr5:88669994-88670013 MsG0580028918.01.T01:intron 25.0%
! AACCTTCAAAAAAATGACAA+AGG + Chr5:88670151-88670170 None:intergenic 25.0%
! AAGAATAAAGAAAGGAAAGT+GGG + Chr5:88669326-88669345 None:intergenic 25.0%
! AATATAATTGGGTCAAAACA+TGG - Chr5:88672312-88672331 MsG0580028918.01.T01:intron 25.0%
! AGTTCATCCTAAAATGATTT+CGG - Chr5:88672283-88672302 MsG0580028918.01.T01:intron 25.0%
! ATATAATTGGGTCAAAACAT+GGG - Chr5:88672313-88672332 MsG0580028918.01.T01:intron 25.0%
! ATGATATATAGTAACTGGAA+TGG + Chr5:88669398-88669417 None:intergenic 25.0%
! ATTAGAGTAAAGATCCAATT+TGG - Chr5:88669498-88669517 MsG0580028918.01.T01:CDS 25.0%
! ATTCTAGTATTTAACCCTAA+TGG + Chr5:88670995-88671014 None:intergenic 25.0%
! GGAGAAATAAGAAAATACTA+AGG - Chr5:88670485-88670504 MsG0580028918.01.T01:intron 25.0%
! GTATTATTGTGATCTAAATG+TGG - Chr5:88674225-88674244 MsG0580028918.01.T01:five_prime_UTR 25.0%
! TAAGAATAAAGAAAGGAAAG+TGG + Chr5:88669327-88669346 None:intergenic 25.0%
! TAAGGTAACTTTATCTTTAG+TGG - Chr5:88672405-88672424 MsG0580028918.01.T01:intron 25.0%
! TACTTGTCATTCTTAGAATT+TGG + Chr5:88671524-88671543 None:intergenic 25.0%
! TATTAAATCCTAATCCTAAC+GGG + Chr5:88670963-88670982 None:intergenic 25.0%
! TCAACAGTTTGTCTATATAT+TGG + Chr5:88672556-88672575 None:intergenic 25.0%
! TGAAGTAGACTCTTATAAAA+CGG - Chr5:88671943-88671962 MsG0580028918.01.T01:intron 25.0%
! TGGTTATAAAAACAAGTATC+AGG + Chr5:88673134-88673153 None:intergenic 25.0%
! TTACAGAATTATAAGAGTCT+TGG - Chr5:88673300-88673319 MsG0580028918.01.T01:intron 25.0%
! TTATCAGAGAAAAATACAAG+AGG + Chr5:88673457-88673476 None:intergenic 25.0%
! TTCTAGTATTTAACCCTAAT+GGG + Chr5:88670994-88671013 None:intergenic 25.0%
!! AAATTCTAAGAATGACAAGT+AGG - Chr5:88671523-88671542 MsG0580028918.01.T01:intron 25.0%
!! AATTCTAAGAATGACAAGTA+GGG - Chr5:88671524-88671543 MsG0580028918.01.T01:intron 25.0%
!! ACCTATTCTAGATCTAAAAT+TGG - Chr5:88671370-88671389 MsG0580028918.01.T01:intron 25.0%
!! CAGACTTTAGATTTTACTAT+AGG - Chr5:88673268-88673287 MsG0580028918.01.T01:intron 25.0%
!! CTATAGTAAAATCTAAAGTC+TGG + Chr5:88673270-88673289 None:intergenic 25.0%
!! TTAAAAAAAAACAGAGCATC+TGG + Chr5:88672735-88672754 None:intergenic 25.0%
!! TTCGGTTAGTCAATATAATT+GGG - Chr5:88672301-88672320 MsG0580028918.01.T01:intron 25.0%
!! TTTAATTCACTTCGAGTTAT+TGG + Chr5:88673632-88673651 None:intergenic 25.0%
!! TTTCGGTTAGTCAATATAAT+TGG - Chr5:88672300-88672319 MsG0580028918.01.T01:intron 25.0%
!!! AGTTATTTTATGGTTATGGT+AGG + Chr5:88673332-88673351 None:intergenic 25.0%
!!! ATAGACCTTAATTTTAGTTG+TGG - Chr5:88674045-88674064 MsG0580028918.01.T01:intron 25.0%
!!! GAATTTTGCTATTGAACTTT+AGG - Chr5:88669940-88669959 MsG0580028918.01.T01:intron 25.0%
!!! GATGCTCTGTTTTTTTTTAA+CGG - Chr5:88672735-88672754 MsG0580028918.01.T01:intron 25.0%
!!! GCAATATTTCAAGTTAATGT+GGG + Chr5:88671248-88671267 None:intergenic 25.0%
!!! GGATAGTTATTTTATGGTTA+TGG + Chr5:88673336-88673355 None:intergenic 25.0%
!!! GTTAATATGGTGTTGTTATA+AGG - Chr5:88670615-88670634 MsG0580028918.01.T01:intron 25.0%
!!! TAGACCTTAATTTTAGTTGT+GGG - Chr5:88674046-88674065 MsG0580028918.01.T01:intron 25.0%
!!! TCCAATTTTAGATCTAGAAT+AGG + Chr5:88671374-88671393 None:intergenic 25.0%
!!! TTCCTTTGTCATTTTTTTGA+AGG - Chr5:88670146-88670165 MsG0580028918.01.T01:intron 25.0%
AAATTGAGGAACAATTAGTG+TGG - Chr5:88672375-88672394 MsG0580028918.01.T01:intron 30.0%
AACAAATTGCTTCCTTAACT+TGG - Chr5:88674320-88674339 MsG0580028918.01.T01:five_prime_UTR 30.0%
AACTATTTCCTTCCAAGTTA+AGG + Chr5:88674335-88674354 None:intergenic 30.0%
AATAGGTTGTGATACCATAT+TGG + Chr5:88671357-88671376 None:intergenic 30.0%
AATATGCGAAAAGTGACAAA+GGG - Chr5:88669971-88669990 MsG0580028918.01.T01:intron 30.0%
AGAATAAAAACACACAACGT+AGG + Chr5:88669138-88669157 None:intergenic 30.0%
AGACTCTTATAAAACGGTAT+GGG - Chr5:88671949-88671968 MsG0580028918.01.T01:intron 30.0%
AGTAAGATGTTGATACGATA+CGG + Chr5:88669162-88669181 None:intergenic 30.0%
AGTTGTGTTTGCTTTAATCA+TGG - Chr5:88673560-88673579 MsG0580028918.01.T01:intron 30.0%
ATTCATTCATTCTCAACGAA+TGG - Chr5:88669260-88669279 MsG0580028918.01.T01:three_prime_UTR 30.0%
CCTCATTCTTTCAAACATTA+GGG - Chr5:88672701-88672720 MsG0580028918.01.T01:intron 30.0%
CTACCAATGAATTAACAGTA+AGG + Chr5:88671198-88671217 None:intergenic 30.0%
CTACCTTACTGTTAATTCAT+TGG - Chr5:88671192-88671211 MsG0580028918.01.T01:intron 30.0%
CTTACTGTTAATTCATTGGT+AGG - Chr5:88671196-88671215 MsG0580028918.01.T01:intron 30.0%
GAAATACTCACGTATTGTTA+AGG + Chr5:88672084-88672103 None:intergenic 30.0%
GAAATGTCACAATAAAGCTT+TGG - Chr5:88669993-88670012 MsG0580028918.01.T01:intron 30.0%
GATATTCATCCTTTGTTGAT+AGG - Chr5:88671636-88671655 MsG0580028918.01.T01:intron 30.0%
GTATATAAAGGGGAATTCTT+AGG - Chr5:88671028-88671047 MsG0580028918.01.T01:intron 30.0%
TAAAAACAAGTATCAGGAAG+TGG + Chr5:88673128-88673147 None:intergenic 30.0%
TAATAATAAGAGGCCCATTA+GGG - Chr5:88670978-88670997 MsG0580028918.01.T01:intron 30.0%
TAATTAGGAGTTGCATTTCT+TGG - Chr5:88673528-88673547 MsG0580028918.01.T01:intron 30.0%
TAGACTCTTATAAAACGGTA+TGG - Chr5:88671948-88671967 MsG0580028918.01.T01:intron 30.0%
TAGATTCACACACAAAACAA+AGG - Chr5:88669084-88669103 MsG0580028918.01.T01:three_prime_UTR 30.0%
TCATTCTTAGAATTTGGACT+AGG + Chr5:88671518-88671537 None:intergenic 30.0%
TCCTCATTCTTTCAAACATT+AGG - Chr5:88672700-88672719 MsG0580028918.01.T01:intron 30.0%
TGAATAAACAGAGAAAGGAA+AGG + Chr5:88673373-88673392 None:intergenic 30.0%
TGAATGAATAGGAAGAAAGA+AGG + Chr5:88669249-88669268 None:intergenic 30.0%
TGGAAAAAAGATCAGTATTG+AGG - Chr5:88674245-88674264 MsG0580028918.01.T01:five_prime_UTR 30.0%
TTAACACATGCTTCATATTG+TGG - Chr5:88673483-88673502 MsG0580028918.01.T01:intron 30.0%
TTAATAATAAGAGGCCCATT+AGG - Chr5:88670977-88670996 MsG0580028918.01.T01:intron 30.0%
TTAGAGGTTTAACAACATCA+AGG + Chr5:88669472-88669491 None:intergenic 30.0%
TTCATTCATTCTCAACGAAT+GGG - Chr5:88669261-88669280 MsG0580028918.01.T01:three_prime_UTR 30.0%
TTCGTTGAGAATGAATGAAT+AGG + Chr5:88669260-88669279 None:intergenic 30.0%
TTGACCCACAACTAAAATTA+AGG + Chr5:88674053-88674072 None:intergenic 30.0%
TTTACTCAAGAAACATTGCA+TGG + Chr5:88674116-88674135 None:intergenic 30.0%
! ACGTATTGTTAAGGTAGTTT+TGG + Chr5:88672075-88672094 None:intergenic 30.0%
! ATTGTTGGCACATTTTCATA+TGG + Chr5:88674297-88674316 None:intergenic 30.0%
! CGTGATAATTGTTTTCTCAT+AGG - Chr5:88670687-88670706 MsG0580028918.01.T01:intron 30.0%
! CTTGATATTGTACCAAGTTT+TGG - Chr5:88674143-88674162 MsG0580028918.01.T01:exon 30.0%
! GATTGTGAATTTGTGTGTTT+TGG - Chr5:88669609-88669628 MsG0580028918.01.T01:intron 30.0%
! GTTTGTTCTTTCGAGTAATT+AGG - Chr5:88673513-88673532 MsG0580028918.01.T01:intron 30.0%
! TGACTAACCGAAATCATTTT+AGG + Chr5:88672293-88672312 None:intergenic 30.0%
! TTGCTATTGAACTTTAGGTT+GGG - Chr5:88669945-88669964 MsG0580028918.01.T01:intron 30.0%
!! AATATGGTGTTGTTATAAGG+AGG - Chr5:88670618-88670637 MsG0580028918.01.T01:intron 30.0%
!! ATTGGTTTGATCTTCTCAAA+GGG - Chr5:88671892-88671911 MsG0580028918.01.T01:intron 30.0%
!! GGCAATATTTCAAGTTAATG+TGG + Chr5:88671249-88671268 None:intergenic 30.0%
!! GTGATGGGATAGTTATTTTA+TGG + Chr5:88673342-88673361 None:intergenic 30.0%
!! GTTTCACTTTTCAATGAATG+AGG - Chr5:88672658-88672677 MsG0580028918.01.T01:intron 30.0%
!! TAGTTGTTTTATGTGCAGTA+GGG - Chr5:88670555-88670574 MsG0580028918.01.T01:intron 30.0%
!! TGAACCTTCCATTTTAAAGA+TGG + Chr5:88672122-88672141 None:intergenic 30.0%
!! TTTGCTATTGAACTTTAGGT+TGG - Chr5:88669944-88669963 MsG0580028918.01.T01:intron 30.0%
!!! ATATTGTACCAAGTTTTGGA+TGG - Chr5:88674147-88674166 MsG0580028918.01.T01:exon 30.0%
!!! CATTTTTTTGAAGGTTGTGT+TGG - Chr5:88670155-88670174 MsG0580028918.01.T01:intron 30.0%
!!! TTGAACAATTTTGGTTACTG+AGG - Chr5:88673244-88673263 MsG0580028918.01.T01:intron 30.0%
!!! TTTGTTTTGTTTGACAGACA+GGG - Chr5:88669819-88669838 MsG0580028918.01.T01:CDS 30.0%
AAAAGGGCTACGAAGTAAAT+TGG + Chr5:88671270-88671289 None:intergenic 35.0%
AAAATCACAAGGCGGTTATT+GGG - Chr5:88671679-88671698 MsG0580028918.01.T01:intron 35.0%
AAACACAACTGAAGAAGTCA+AGG - Chr5:88671830-88671849 MsG0580028918.01.T01:intron 35.0%
AAACTTTAGCGACCAATGAA+TGG + Chr5:88669226-88669245 None:intergenic 35.0%
AACACATATCATGGATCACT+AGG - Chr5:88671784-88671803 MsG0580028918.01.T01:intron 35.0%
AACAGAAACCATCCAAAACT+TGG + Chr5:88674158-88674177 None:intergenic 35.0%
AACTTAGAACGTAGAGCTAA+AGG - Chr5:88672491-88672510 MsG0580028918.01.T01:intron 35.0%
AATGTGGGAACCTAATTGAT+AGG + Chr5:88671233-88671252 None:intergenic 35.0%
AATTAACAGTAAGGTAGCCA+AGG + Chr5:88671189-88671208 None:intergenic 35.0%
AATTAGCTGGCCATATATGA+GGG - Chr5:88671857-88671876 MsG0580028918.01.T01:intron 35.0%
AATTAGTGTGGCTTCCAATA+AGG - Chr5:88672387-88672406 MsG0580028918.01.T01:intron 35.0%
AATTCATTGGTAGGATCCTT+TGG - Chr5:88671205-88671224 MsG0580028918.01.T01:intron 35.0%
ACACGTGATCATACAAATTG+AGG - Chr5:88672361-88672380 MsG0580028918.01.T01:intron 35.0%
ACATTCCACAAACCATTCAT+TGG - Chr5:88669211-88669230 MsG0580028918.01.T01:three_prime_UTR 35.0%
ACCTAATTGATAGGAACCAA+AGG + Chr5:88671224-88671243 None:intergenic 35.0%
ACTCTTATAAAACGGTATGG+GGG - Chr5:88671951-88671970 MsG0580028918.01.T01:intron 35.0%
ACTGTTGATGTTGTTAGTGT+TGG - Chr5:88672568-88672587 MsG0580028918.01.T01:intron 35.0%
ACTTAGAACGTAGAGCTAAA+GGG - Chr5:88672492-88672511 MsG0580028918.01.T01:intron 35.0%
AGTGTTAACTTATGCCGTTA+GGG - Chr5:88670212-88670231 MsG0580028918.01.T01:intron 35.0%
ATACGTGAGTATTTCATGAG+TGG - Chr5:88672089-88672108 MsG0580028918.01.T01:intron 35.0%
ATCTGTTGGAAGAATTCAAG+AGG - Chr5:88671550-88671569 MsG0580028918.01.T01:intron 35.0%
ATGAAAGAACCGAAACGTTA+AGG - Chr5:88672954-88672973 MsG0580028918.01.T01:intron 35.0%
ATGGAAGATTTGACCAAGTT+TGG + Chr5:88674097-88674116 None:intergenic 35.0%
ATGTCCAATACTAGATGTGA+GGG - Chr5:88671419-88671438 MsG0580028918.01.T01:intron 35.0%
ATTAGAATGGCTTAGATGGA+AGG - Chr5:88672173-88672192 MsG0580028918.01.T01:intron 35.0%
CAATATGCGAAAAGTGACAA+AGG - Chr5:88669970-88669989 MsG0580028918.01.T01:intron 35.0%
CAGAAAACAAGCCTAAAATG+TGG - Chr5:88670449-88670468 MsG0580028918.01.T01:intron 35.0%
CCAGTATCAAGAAAATCACA+AGG - Chr5:88671668-88671687 MsG0580028918.01.T01:intron 35.0%
CCATATTAACTCGATCATTG+CGG + Chr5:88670605-88670624 None:intergenic 35.0%
CCCTAATGTTTGAAAGAATG+AGG + Chr5:88672704-88672723 None:intergenic 35.0%
CGTTAACAAGGAAATGAGAA+GGG - Chr5:88672428-88672447 MsG0580028918.01.T01:intron 35.0%
CTAACTGTTCTGTCAAACAT+AGG + Chr5:88671740-88671759 None:intergenic 35.0%
CTTGCTAGAACTTGAATCTA+TGG + Chr5:88672341-88672360 None:intergenic 35.0%
GACTCTTATAAAACGGTATG+GGG - Chr5:88671950-88671969 MsG0580028918.01.T01:intron 35.0%
GGATTCTGTAAACATAGATG+TGG - Chr5:88673946-88673965 MsG0580028918.01.T01:intron 35.0%
GGTACTATTGAGCAATATAG+AGG - Chr5:88672023-88672042 MsG0580028918.01.T01:intron 35.0%
GGTTCTTTCATAGTCTGTTA+TGG + Chr5:88672945-88672964 None:intergenic 35.0%
GTATCAAGAAAATCACAAGG+CGG - Chr5:88671671-88671690 MsG0580028918.01.T01:intron 35.0%
GTGACTATGGTTTCATAGTT+TGG - Chr5:88669783-88669802 MsG0580028918.01.T01:CDS 35.0%
GTGATACCATATTGGAGTAT+GGG + Chr5:88671349-88671368 None:intergenic 35.0%
GTTAACAAGGAAATGAGAAG+GGG - Chr5:88672429-88672448 MsG0580028918.01.T01:intron 35.0%
GTTGATTAGAATGGCTTAGA+TGG - Chr5:88672169-88672188 MsG0580028918.01.T01:intron 35.0%
TACTTCAACTTATCCCAAGT+CGG + Chr5:88671930-88671949 None:intergenic 35.0%
TAGAGTGCAGTTGATTAGAA+TGG - Chr5:88672160-88672179 MsG0580028918.01.T01:intron 35.0%
TAGTGTTAACTTATGCCGTT+AGG - Chr5:88670211-88670230 MsG0580028918.01.T01:intron 35.0%
TATCTTTAGTGGCGTTAACA+AGG - Chr5:88672416-88672435 MsG0580028918.01.T01:intron 35.0%
TATGTCCAATACTAGATGTG+AGG - Chr5:88671418-88671437 MsG0580028918.01.T01:intron 35.0%
TATTAGTGTTAGGACCTAGT+AGG - Chr5:88670875-88670894 MsG0580028918.01.T01:intron 35.0%
TCTGTTGGAAGAATTCAAGA+GGG - Chr5:88671551-88671570 MsG0580028918.01.T01:intron 35.0%
TGAGTCAATTAAAGACAGAG+AGG - Chr5:88673898-88673917 MsG0580028918.01.T01:intron 35.0%
TGTGATACCATATTGGAGTA+TGG + Chr5:88671350-88671369 None:intergenic 35.0%
TTAACAAGGAAATGAGAAGG+GGG - Chr5:88672430-88672449 MsG0580028918.01.T01:intron 35.0%
TTAAGGTCTATGCATTACAC+TGG + Chr5:88674036-88674055 None:intergenic 35.0%
TTAATCATGGATGCAATTGC+AGG - Chr5:88673573-88673592 MsG0580028918.01.T01:CDS 35.0%
TTCTGTTAGAACCCAAAGTT+AGG - Chr5:88670414-88670433 MsG0580028918.01.T01:intron 35.0%
TTGATGAGACCTATCAACAA+AGG + Chr5:88671648-88671667 None:intergenic 35.0%
TTGCTACATGATTTCATGCA+AGG - Chr5:88673925-88673944 MsG0580028918.01.T01:intron 35.0%
TTGTGTACAGTAACCAAACT+TGG - Chr5:88674081-88674100 MsG0580028918.01.T01:intron 35.0%
TTGTTTCCAAGAACAAGCAA+AGG + Chr5:88673689-88673708 None:intergenic 35.0%
! AATTGCTTCCTTAACTTGGA+AGG - Chr5:88674324-88674343 MsG0580028918.01.T01:five_prime_UTR 35.0%
! ACAGATTGAGTTTTCTGTTC+AGG - Chr5:88671064-88671083 MsG0580028918.01.T01:intron 35.0%
! AGGAGAGTACAGAAATCAAT+TGG + Chr5:88673437-88673456 None:intergenic 35.0%
! ATCAACTGCACTCTATTTTG+AGG + Chr5:88672155-88672174 None:intergenic 35.0%
! CACATCTAGTATTGGACATA+TGG + Chr5:88671418-88671437 None:intergenic 35.0%
! CAGATTGAGTTTTCTGTTCA+GGG - Chr5:88671065-88671084 MsG0580028918.01.T01:intron 35.0%
! CCTTGTGATTTTCTTGATAC+TGG + Chr5:88671671-88671690 None:intergenic 35.0%
! CTGTAACTTTGCTCCATTTT+CGG + Chr5:88672803-88672822 None:intergenic 35.0%
! CTTTTCAATGAATGAGGAAG+AGG - Chr5:88672664-88672683 MsG0580028918.01.T01:intron 35.0%
! GAATGGTTTGTGGAATGTTA+AGG + Chr5:88669209-88669228 None:intergenic 35.0%
! GTCTTCAGCCATCTTTAAAA+TGG - Chr5:88672111-88672130 MsG0580028918.01.T01:intron 35.0%
! TAATCACCATTGTTTCTCCT+TGG - Chr5:88671169-88671188 MsG0580028918.01.T01:intron 35.0%
! TCCTTTGGTTCCTATCAATT+AGG - Chr5:88671220-88671239 MsG0580028918.01.T01:intron 35.0%
! TGTAACTTTGCTCCATTTTC+GGG + Chr5:88672802-88672821 None:intergenic 35.0%
! TTGGATTGGATCACAAAAGT+CGG + Chr5:88670818-88670837 None:intergenic 35.0%
! TTTAGGATGAACTGAACCTT+AGG + Chr5:88672276-88672295 None:intergenic 35.0%
! TTTTGTGATCCAATCCAAGA+GGG - Chr5:88670820-88670839 MsG0580028918.01.T01:intron 35.0%
!! ACAATAAAGCTTTGGGATCT+TGG - Chr5:88670001-88670020 MsG0580028918.01.T01:intron 35.0%
!! ATTCTTAACTTGTGCCCTAA+CGG + Chr5:88670229-88670248 None:intergenic 35.0%
!! CATTGGTTTGATCTTCTCAA+AGG - Chr5:88671891-88671910 MsG0580028918.01.T01:intron 35.0%
!! CTAGTTGTTTTATGTGCAGT+AGG - Chr5:88670554-88670573 MsG0580028918.01.T01:intron 35.0%
!! TCAGCCATCTTTAAAATGGA+AGG - Chr5:88672115-88672134 MsG0580028918.01.T01:intron 35.0%
!! TCCACTGGTTTCAAGAATTT+GGG - Chr5:88673073-88673092 MsG0580028918.01.T01:intron 35.0%
!! TTCCACTGGTTTCAAGAATT+TGG - Chr5:88673072-88673091 MsG0580028918.01.T01:intron 35.0%
!! TTTCTTAACTTGTGCCTTGA+GGG - Chr5:88670351-88670370 MsG0580028918.01.T01:intron 35.0%
!!! AATGTGACTGAACTAGCTTT+TGG - Chr5:88671480-88671499 MsG0580028918.01.T01:intron 35.0%
!!! ATGTGACTGAACTAGCTTTT+GGG - Chr5:88671481-88671500 MsG0580028918.01.T01:intron 35.0%
!!! GTTTGTTTTGTTTGACAGAC+AGG - Chr5:88669818-88669837 MsG0580028918.01.T01:CDS 35.0%
!!! TTAAGGTAGTTTTGGTACCT+TGG + Chr5:88672067-88672086 None:intergenic 35.0%
!!! TTGTTAGCTTTTCGACTGTT+CGG - Chr5:88672002-88672021 MsG0580028918.01.T01:intron 35.0%
!!! TTGTTTTGTTTGACAGACAG+GGG - Chr5:88669820-88669839 MsG0580028918.01.T01:CDS 35.0%
AAAGGAATCCCATTCAAGGA+AGG + Chr5:88673671-88673690 None:intergenic 40.0%
AACCAACGTCGAACAATCAA+AGG + Chr5:88673864-88673883 None:intergenic 40.0%
AACCTTTGATTGTTCGACGT+TGG - Chr5:88673859-88673878 MsG0580028918.01.T01:intron 40.0%
AAGCAAAGGAATCCCATTCA+AGG + Chr5:88673675-88673694 None:intergenic 40.0%
AAGTCAAGGTGAGAATTAGC+TGG - Chr5:88671844-88671863 MsG0580028918.01.T01:intron 40.0%
AAGTTCATCTACCATATCCG+TGG - Chr5:88670737-88670756 MsG0580028918.01.T01:intron 40.0%
AATCCCATAAGCTACCTCAA+GGG + Chr5:88671313-88671332 None:intergenic 40.0%
AATCCCATTCAAGGAAGGTT+TGG + Chr5:88673666-88673685 None:intergenic 40.0%
ACAAAAGTCGGACCAACTAT+AGG + Chr5:88670806-88670825 None:intergenic 40.0%
ACAGAGAAAGGAAAGGAGAA+AGG + Chr5:88673366-88673385 None:intergenic 40.0%
ACCCAAATTCTTGAAACCAG+TGG + Chr5:88673077-88673096 None:intergenic 40.0%
AGAATTCAAGAGGGCAAACA+TGG - Chr5:88671560-88671579 MsG0580028918.01.T01:intron 40.0%
AGACAAAGGCCTTAACGTTT+CGG + Chr5:88672966-88672985 None:intergenic 40.0%
AGAGAAAGGAAAGGAGAAAG+GGG + Chr5:88673364-88673383 None:intergenic 40.0%
AGATGGTTATTGGGAAACAG+TGG - Chr5:88672217-88672236 MsG0580028918.01.T01:intron 40.0%
AGCCTCAAGAGATGGTTATT+GGG - Chr5:88672208-88672227 MsG0580028918.01.T01:intron 40.0%
AGTCCAAAAAACTCGTCTGA+CGG - Chr5:88671758-88671777 MsG0580028918.01.T01:intron 40.0%
ATGATCCAGGACCTAACTTT+GGG + Chr5:88670428-88670447 None:intergenic 40.0%
ATTAGCTGGCCATATATGAG+GGG - Chr5:88671858-88671877 MsG0580028918.01.T01:intron 40.0%
CAAAAGTCGGACCAACTATA+GGG + Chr5:88670805-88670824 None:intergenic 40.0%
CAGAGAAAGGAAAGGAGAAA+GGG + Chr5:88673365-88673384 None:intergenic 40.0%
CCGCAATGATCGAGTTAATA+TGG - Chr5:88670602-88670621 MsG0580028918.01.T01:intron 40.0%
GAAAATCACAAGGCGGTTAT+TGG - Chr5:88671678-88671697 MsG0580028918.01.T01:intron 40.0%
GAATTAGCTGGCCATATATG+AGG - Chr5:88671856-88671875 MsG0580028918.01.T01:intron 40.0%
GATGAACTGAACCTTAGGTT+AGG + Chr5:88672271-88672290 None:intergenic 40.0%
GCATATGTGTCACAATACTG+AGG - Chr5:88671586-88671605 MsG0580028918.01.T01:intron 40.0%
GCGTTAACAAGGAAATGAGA+AGG - Chr5:88672427-88672446 MsG0580028918.01.T01:intron 40.0%
GGTTTGTGGAATGTTAAGGA+AGG + Chr5:88669205-88669224 None:intergenic 40.0%
GTCTATGCATTACACTGGAA+AGG + Chr5:88674031-88674050 None:intergenic 40.0%
GTGGTGAAAAATTCCATTCG+CGG - Chr5:88672528-88672547 MsG0580028918.01.T01:intron 40.0%
GTTGCTTGTTCTTGTGACTA+TGG - Chr5:88669770-88669789 MsG0580028918.01.T01:CDS 40.0%
TAATCCCATAAGCTACCTCA+AGG + Chr5:88671314-88671333 None:intergenic 40.0%
TATAAAACGGTATGGGGGAT+GGG - Chr5:88671956-88671975 MsG0580028918.01.T01:intron 40.0%
TCACAATACTGAGGATTGCA+GGG - Chr5:88671595-88671614 MsG0580028918.01.T01:intron 40.0%
TGACCAAACCTTCCTTGAAT+GGG - Chr5:88673660-88673679 MsG0580028918.01.T01:intron 40.0%
TGACGGAACAACACATATCA+TGG - Chr5:88671775-88671794 MsG0580028918.01.T01:intron 40.0%
TGTCCAATACTAGATGTGAG+GGG - Chr5:88671420-88671439 MsG0580028918.01.T01:intron 40.0%
TTAAAACACCCTCTCCTACT+AGG + Chr5:88670892-88670911 None:intergenic 40.0%
TTATAAAACGGTATGGGGGA+TGG - Chr5:88671955-88671974 MsG0580028918.01.T01:intron 40.0%
TTATGGCTCTTGTCTTGCTT+TGG + Chr5:88672928-88672947 None:intergenic 40.0%
TTATTAGTAAGTGGCCCGTT+AGG - Chr5:88670946-88670965 MsG0580028918.01.T01:intron 40.0%
TTCAAGAATTTGGGTACCTC+AGG - Chr5:88673082-88673101 MsG0580028918.01.T01:intron 40.0%
TTCCCAATAACCATCTCTTG+AGG + Chr5:88672213-88672232 None:intergenic 40.0%
TTGATCTACCAATGCTTGCT+TGG + Chr5:88673735-88673754 None:intergenic 40.0%
TTGTGGAATGTTAAGGAAGG+AGG + Chr5:88669202-88669221 None:intergenic 40.0%
TTTGTGATCCAATCCAAGAG+GGG - Chr5:88670821-88670840 MsG0580028918.01.T01:intron 40.0%
! AAATGTGGCTTGTGTACTCT+AGG - Chr5:88670464-88670483 MsG0580028918.01.T01:intron 40.0%
! AAGATTGGCCAAGGCTTAAA+AGG + Chr5:88671287-88671306 None:intergenic 40.0%
! ACAAAGAGTACACCAATCCA+CGG + Chr5:88670757-88670776 None:intergenic 40.0%
! AGATTGGCCAAGGCTTAAAA+GGG + Chr5:88671286-88671305 None:intergenic 40.0%
! ATCAAGATGTTGATTGGTCG+TGG - Chr5:88673166-88673185 MsG0580028918.01.T01:intron 40.0%
! CTTTTGTGATCCAATCCAAG+AGG - Chr5:88670819-88670838 MsG0580028918.01.T01:intron 40.0%
! GAGTACACAAGCCACATTTT+AGG + Chr5:88670463-88670482 None:intergenic 40.0%
! GGAGGACTTGTGTAAGTTTT+TGG - Chr5:88670636-88670655 MsG0580028918.01.T01:intron 40.0%
! GTTGATGTTGTTAGTGTTGG+AGG - Chr5:88672571-88672590 MsG0580028918.01.T01:intron 40.0%
! GTTTTCTCATAGGAGAGTCT+CGG - Chr5:88670697-88670716 MsG0580028918.01.T01:intron 40.0%
! TAAGTTTTCGGCCTAACCTA+AGG - Chr5:88672257-88672276 MsG0580028918.01.T01:intron 40.0%
! TCTGGGATTCTCTTCTCAAT+TGG - Chr5:88669286-88669305 MsG0580028918.01.T01:three_prime_UTR 40.0%
! TTGTCTTGCTTTGGTGACTT+TGG + Chr5:88672919-88672938 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + Chr5:88670368-88670387 None:intergenic 40.0%
!! ATAAAGCTTTGGGATCTTGG+TGG - Chr5:88670004-88670023 MsG0580028918.01.T01:intron 40.0%
!! ATCCCAAGTCGGTTTTTCTT+CGG + Chr5:88671919-88671938 None:intergenic 40.0%
!! GAAGGAGGAGATGTTTTGTT+TGG + Chr5:88669187-88669206 None:intergenic 40.0%
!! GTTTCTTAACTTGTGCCTTG+AGG - Chr5:88670350-88670369 MsG0580028918.01.T01:intron 40.0%
!!! GACTTTGGTCTTGGTGTTTT+GGG + Chr5:88672904-88672923 None:intergenic 40.0%
!!! GAGGCAGCTTGTTAAGTTTT+CGG - Chr5:88672245-88672264 MsG0580028918.01.T01:intron 40.0%
!!! TGACTTTGGTCTTGGTGTTT+TGG + Chr5:88672905-88672924 None:intergenic 40.0%
!!! TGTGACTGAACTAGCTTTTG+GGG - Chr5:88671482-88671501 MsG0580028918.01.T01:intron 40.0%
!!! TGTTTTGTTTGACAGACAGG+GGG - Chr5:88669821-88669840 MsG0580028918.01.T01:intron 40.0%
!!! TTTTGTGTTGATTCCCTCCA+AGG - Chr5:88672047-88672066 MsG0580028918.01.T01:intron 40.0%
AAAGGGTTGTGCTTCAAGTG+TGG - Chr5:88672509-88672528 MsG0580028918.01.T01:intron 45.0%
AACGGAGGTTTCGAACAATG+TGG - Chr5:88670029-88670048 MsG0580028918.01.T01:intron 45.0%
AATTCATAACCCTCCCCTCT+TGG + Chr5:88670837-88670856 None:intergenic 45.0%
ACAACAAAACACCCAGCCAA+AGG - Chr5:88672829-88672848 MsG0580028918.01.T01:intron 45.0%
ACATAGATGTGGTCATCGAC+TGG - Chr5:88673957-88673976 MsG0580028918.01.T01:intron 45.0%
ACCATATTGGAGTATGGGCT+AGG + Chr5:88671344-88671363 None:intergenic 45.0%
ACGGAGGTTTCGAACAATGT+GGG - Chr5:88670030-88670049 MsG0580028918.01.T01:intron 45.0%
AGCGACCAATGAATGGTTTG+TGG + Chr5:88669219-88669238 None:intergenic 45.0%
AGCTCTTTCCAAGCAAGCAT+TGG - Chr5:88673724-88673743 MsG0580028918.01.T01:CDS 45.0%
AGGTAGCCAAGGAGAAACAA+TGG + Chr5:88671178-88671197 None:intergenic 45.0%
AGTACACCAATCCACGGATA+TGG + Chr5:88670751-88670770 None:intergenic 45.0%
ATCCAAGCTATTACGACCTG+AGG + Chr5:88673101-88673120 None:intergenic 45.0%
ATCCCATAAGCTACCTCAAG+GGG + Chr5:88671312-88671331 None:intergenic 45.0%
ATTCTCAACGAATGGGTCTC+TGG - Chr5:88669268-88669287 MsG0580028918.01.T01:three_prime_UTR 45.0%
CAGCCTCAAGAGATGGTTAT+TGG - Chr5:88672207-88672226 MsG0580028918.01.T01:intron 45.0%
CATCTACCATATCCGTGGAT+TGG - Chr5:88670742-88670761 MsG0580028918.01.T01:intron 45.0%
CATGATCCAGGACCTAACTT+TGG + Chr5:88670429-88670448 None:intergenic 45.0%
CTGACCAAACCTTCCTTGAA+TGG - Chr5:88673659-88673678 MsG0580028918.01.T01:intron 45.0%
CTTGTAGGTCTTCAGAATGC+TGG - Chr5:88669666-88669685 MsG0580028918.01.T01:intron 45.0%
GATTCCTCTCTGAGTTGTGT+CGG - Chr5:88671097-88671116 MsG0580028918.01.T01:intron 45.0%
GCACAAGATGAACCCGAAAA+TGG - Chr5:88672787-88672806 MsG0580028918.01.T01:intron 45.0%
GGGATTCCTTTGCTTGTTCT+TGG - Chr5:88673680-88673699 MsG0580028918.01.T01:intron 45.0%
GGTTCATCTTGTGCTCGATT+TGG + Chr5:88672781-88672800 None:intergenic 45.0%
GTCACAATACTGAGGATTGC+AGG - Chr5:88671594-88671613 MsG0580028918.01.T01:intron 45.0%
GTCCAATACTAGATGTGAGG+GGG - Chr5:88671421-88671440 MsG0580028918.01.T01:intron 45.0%
TACCTCAGGTCGTAATAGCT+TGG - Chr5:88673096-88673115 MsG0580028918.01.T01:intron 45.0%
TAGAACCCAAAGTTAGGTCC+TGG - Chr5:88670420-88670439 MsG0580028918.01.T01:intron 45.0%
TCGTGGATGCTGATAGAAAC+TGG - Chr5:88673183-88673202 MsG0580028918.01.T01:intron 45.0%
TCTCGGCGTTAAGGCTAATA+GGG - Chr5:88670714-88670733 MsG0580028918.01.T01:intron 45.0%
TGGTTATTGGGAAACAGTGG+TGG - Chr5:88672220-88672239 MsG0580028918.01.T01:intron 45.0%
TGTTAGGACCTAGTAGGAGA+GGG - Chr5:88670881-88670900 MsG0580028918.01.T01:intron 45.0%
TTATTGGGAAACAGTGGTGG+TGG - Chr5:88672223-88672242 MsG0580028918.01.T01:intron 45.0%
TTCTCAACGAATGGGTCTCT+GGG - Chr5:88669269-88669288 MsG0580028918.01.T01:three_prime_UTR 45.0%
! CATTCAAGGAAGGTTTGGTC+AGG + Chr5:88673661-88673680 None:intergenic 45.0%
! GACAAGTAGGGTTGATCTGT+TGG - Chr5:88671536-88671555 MsG0580028918.01.T01:intron 45.0%
! GACCGAAGAAAAACCGACTT+GGG - Chr5:88671914-88671933 MsG0580028918.01.T01:intron 45.0%
! TCGACGTTGGTTGATTTCAG+AGG - Chr5:88673872-88673891 MsG0580028918.01.T01:intron 45.0%
! TGCTTTGGTGACTTTGGTCT+TGG + Chr5:88672913-88672932 None:intergenic 45.0%
! TTCGTAGCCCTTTTAAGCCT+TGG - Chr5:88671276-88671295 MsG0580028918.01.T01:intron 45.0%
! TTTGGGATCTTGGTGGTCAA+CGG - Chr5:88670011-88670030 MsG0580028918.01.T01:intron 45.0%
!! AGGAAAGTGGGTTTTACCTG+CGG + Chr5:88669314-88669333 None:intergenic 45.0%
!! CTATATATTGGTGCCGCGAA+TGG + Chr5:88672544-88672563 None:intergenic 45.0%
!! GCTTGTTTTCTGCATGATCC+AGG + Chr5:88670441-88670460 None:intergenic 45.0%
!! GTGGATTGGTGTACTCTTTG+TGG - Chr5:88670756-88670775 MsG0580028918.01.T01:intron 45.0%
!!! AGGTAGTTTTGGTACCTTGG+AGG + Chr5:88672064-88672083 None:intergenic 45.0%
!!! GGTAGTTTTGGTACCTTGGA+GGG + Chr5:88672063-88672082 None:intergenic 45.0%
!!! GTCTTGGTGTTTTGGGATCT+TGG + Chr5:88672897-88672916 None:intergenic 45.0%
!!! GTTCCGTCAGACGAGTTTTT+TGG + Chr5:88671764-88671783 None:intergenic 45.0%
AGGAAAGGAGAAAGGGGTGA+TGG + Chr5:88673358-88673377 None:intergenic 50.0%
ATAACCCTCCCCTCTTGGAT+TGG + Chr5:88670832-88670851 None:intergenic 50.0%
ATAGGAGAGTCTCGGCGTTA+AGG - Chr5:88670705-88670724 MsG0580028918.01.T01:intron 50.0%
CAAAGAAGCCATAGCGTCAC+AGG + Chr5:88672999-88673018 None:intergenic 50.0%
CAATACTAGATGTGAGGGGG+TGG - Chr5:88671424-88671443 MsG0580028918.01.T01:intron 50.0%
CACCCCCTCACATCTAGTAT+TGG + Chr5:88671426-88671445 None:intergenic 50.0%
CACCCCTTGAGGTAGCTTAT+GGG - Chr5:88671307-88671326 MsG0580028918.01.T01:intron 50.0%
CACTATGCAGCCTCAAGAGA+TGG - Chr5:88672200-88672219 MsG0580028918.01.T01:intron 50.0%
CTACCTCAAGGGGTGAAGAT+TGG + Chr5:88671302-88671321 None:intergenic 50.0%
CTCAGAGAGGAATCCTACTC+TGG + Chr5:88671091-88671110 None:intergenic 50.0%
CTGTGACGCTATGGCTTCTT+TGG - Chr5:88672997-88673016 MsG0580028918.01.T01:intron 50.0%
GAGATGGAGCTGTCTCTTGT+AGG - Chr5:88669651-88669670 MsG0580028918.01.T01:intron 50.0%
GCCTAGCCCATACTCCAATA+TGG - Chr5:88671340-88671359 MsG0580028918.01.T01:intron 50.0%
GCTGTTCCTCCCCTCATATA+TGG + Chr5:88671870-88671889 None:intergenic 50.0%
GGAAAGGAGAAAGGGGTGAT+GGG + Chr5:88673357-88673376 None:intergenic 50.0%
GGACCGAAGAAAAACCGACT+TGG - Chr5:88671913-88671932 MsG0580028918.01.T01:intron 50.0%
GTAAGTGGCCCGTTAGGATT+AGG - Chr5:88670952-88670971 MsG0580028918.01.T01:intron 50.0%
GTCTCGGCGTTAAGGCTAAT+AGG - Chr5:88670713-88670732 MsG0580028918.01.T01:intron 50.0%
GTGTTAGGACCTAGTAGGAG+AGG - Chr5:88670880-88670899 MsG0580028918.01.T01:intron 50.0%
TCACCCCTTGAGGTAGCTTA+TGG - Chr5:88671306-88671325 MsG0580028918.01.T01:intron 50.0%
TGATCCAATCCAAGAGGGGA+GGG - Chr5:88670825-88670844 MsG0580028918.01.T01:intron 50.0%
TTGTGTCGGAGCTTTGCTCT+GGG - Chr5:88671111-88671130 MsG0580028918.01.T01:intron 50.0%
TTTCTGTTCAGGGCCAGAGT+AGG - Chr5:88671075-88671094 MsG0580028918.01.T01:intron 50.0%
!! GGAGCGTCGACAAATACAAG+TGG + Chr5:88671397-88671416 None:intergenic 50.0%
AAGAAGGCGGTGTAGGTGGT+AGG + Chr5:88673045-88673064 None:intergenic 55.0%
ACAGACAGGGGGATACAGTG+AGG - Chr5:88669832-88669851 MsG0580028918.01.T01:intron 55.0%
AGAAGCCATAGCGTCACAGG+CGG + Chr5:88672996-88673015 None:intergenic 55.0%
AGCTCCGACACAACTCAGAG+AGG + Chr5:88671104-88671123 None:intergenic 55.0%
AGCTGGCCATATATGAGGGG+AGG - Chr5:88671861-88671880 MsG0580028918.01.T01:intron 55.0%
GTCAAAGAAGGCGGTGTAGG+TGG + Chr5:88673049-88673068 None:intergenic 55.0%
GTGATCCAATCCAAGAGGGG+AGG - Chr5:88670824-88670843 MsG0580028918.01.T01:intron 55.0%
GTGGTCAAAGAAGGCGGTGT+AGG + Chr5:88673052-88673071 None:intergenic 55.0%
GTTGTGTCGGAGCTTTGCTC+TGG - Chr5:88671110-88671129 MsG0580028918.01.T01:intron 55.0%
TGACTCGTGACGTGAGCCTT+TGG + Chr5:88672848-88672867 None:intergenic 55.0%
TGAGGGGAGGAACAGCTCAT+TGG - Chr5:88671874-88671893 MsG0580028918.01.T01:intron 55.0%
TGGCCAATCTTCACCCCTTG+AGG - Chr5:88671296-88671315 MsG0580028918.01.T01:intron 55.0%
! CAAGGGGTGAAGATTGGCCA+AGG + Chr5:88671296-88671315 None:intergenic 55.0%
! CTCTTCTCAATTGGCTCCGC+AGG - Chr5:88669295-88669314 MsG0580028918.01.T01:three_prime_UTR 55.0%
!! TTGGGAAACAGTGGTGGTGG+AGG - Chr5:88672226-88672245 MsG0580028918.01.T01:intron 55.0%
CAGGCGGAGGTCAGAGACAA+AGG + Chr5:88672980-88672999 None:intergenic 60.0%
CGTGACGTGAGCCTTTGGCT+GGG + Chr5:88672843-88672862 None:intergenic 60.0%
TCGTGACGTGAGCCTTTGGC+TGG + Chr5:88672844-88672863 None:intergenic 60.0%
! GGGATCTTGGTGGTCAACGG+AGG - Chr5:88670014-88670033 MsG0580028918.01.T01:intron 60.0%
!! ATGTGGGAGCGCTACTGTCG+CGG - Chr5:88670046-88670065 MsG0580028918.01.T01:intron 60.0%
!! GTGTAGGTGGTAGGCGTCGA+AGG + Chr5:88673036-88673055 None:intergenic 60.0%
AGCCATAGCGTCACAGGCGG+AGG + Chr5:88672993-88673012 None:intergenic 65.0%
GACCTCCGCCTGTGACGCTA+TGG - Chr5:88672988-88673007 MsG0580028918.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 88669072 88674362 88669072 ID=MsG0580028918.01;Name=MsG0580028918.01
Chr5 mRNA 88669072 88674362 88669072 ID=MsG0580028918.01.T01;Parent=MsG0580028918.01;Name=MsG0580028918.01.T01;_AED=0.46;_eAED=0.46;_QI=207|0.8|0.83|1|1|1|6|353|168
Chr5 exon 88669072 88669542 88669072 ID=MsG0580028918.01.T01:exon:48809;Parent=MsG0580028918.01.T01
Chr5 exon 88669678 88669839 88669678 ID=MsG0580028918.01.T01:exon:48808;Parent=MsG0580028918.01.T01
Chr5 exon 88673399 88673472 88673399 ID=MsG0580028918.01.T01:exon:48807;Parent=MsG0580028918.01.T01
Chr5 exon 88673566 88673598 88673566 ID=MsG0580028918.01.T01:exon:48806;Parent=MsG0580028918.01.T01
Chr5 exon 88673718 88673799 88673718 ID=MsG0580028918.01.T01:exon:48805;Parent=MsG0580028918.01.T01
Chr5 exon 88674118 88674362 88674118 ID=MsG0580028918.01.T01:exon:48804;Parent=MsG0580028918.01.T01
Chr5 five_prime_UTR 88674156 88674362 88674156 ID=MsG0580028918.01.T01:five_prime_utr;Parent=MsG0580028918.01.T01
Chr5 CDS 88674118 88674155 88674118 ID=MsG0580028918.01.T01:cds;Parent=MsG0580028918.01.T01
Chr5 CDS 88673718 88673799 88673718 ID=MsG0580028918.01.T01:cds;Parent=MsG0580028918.01.T01
Chr5 CDS 88673566 88673598 88673566 ID=MsG0580028918.01.T01:cds;Parent=MsG0580028918.01.T01
Chr5 CDS 88673399 88673472 88673399 ID=MsG0580028918.01.T01:cds;Parent=MsG0580028918.01.T01
Chr5 CDS 88669678 88669839 88669678 ID=MsG0580028918.01.T01:cds;Parent=MsG0580028918.01.T01
Chr5 CDS 88669425 88669542 88669425 ID=MsG0580028918.01.T01:cds;Parent=MsG0580028918.01.T01
Chr5 three_prime_UTR 88669072 88669424 88669072 ID=MsG0580028918.01.T01:three_prime_utr;Parent=MsG0580028918.01.T01
Gene Sequence

>MsG0580028918.01.T01

ATGGGTCTCTGGGATTCTCTTCTCAATTGGCTCCGCAGCTTATTTTTTAAACAAGAGATGGAGCTGTCTCTTGTAGGTCTTCAGAATGCTGGAAAAACTTCTCTTGTCAATTCAATTGCTACAGGGGGATACAGTGAGGATATGATTCCAACTGTTGGGTTCAATATGCGAAAAGTGACAAAGGGAAATGTCACAATAAAGCTTTGGGATCTTGGTGGTCAACGGAGGTATGTTGTAGATGCTGCTGATAGAGACAGTGTTCCAATAACTCGAAGTGAATTAAATGAACTCCTGACCAAACCTTCCTTGAATGGGATTCCTTTGCTTGTTCTTGGAAACAAAATTGACAAGTCAGAAGCTCTTTCCAAGCAAGCATTGGTAGATCAACTAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGTTGCTACATGATTTCATGCAAGGATTCTGTAAACATAGATGTGGTCATCGACTGGCTTATCAAACACTCGAAAACTGCGAACTGA

Protein sequence

>MsG0580028918.01.T01

MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRYVVDAADRDSVPITRSELNELLTKPSLNGIPLLVLGNKIDKSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNIDVVIDWLIKHSKTAN*