AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007204.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007204.01.T01 MTR_2g022560 96.468 453 15 1 1 452 1 453 0.0 914
MsG0280007204.01.T01 MTR_7g094750 57.823 441 170 4 6 438 2 434 0.0 551
MsG0280007204.01.T01 MTR_7g094750 58.859 333 126 2 6 333 2 328 7.14e-149 427
MsG0280007204.01.T01 MTR_1g058380 53.736 348 152 4 94 437 53 395 5.24e-129 379
MsG0280007204.01.T01 MTR_7g109550 49.118 340 159 4 96 433 137 464 3.76e-110 333
MsG0280007204.01.T01 MTR_5g033800 42.975 363 186 6 89 443 141 490 8.49e-102 313
MsG0280007204.01.T01 MTR_8g069790 42.938 354 184 4 94 439 176 519 1.69e-100 310
MsG0280007204.01.T01 MTR_8g093530 42.535 355 185 6 96 447 90 428 1.06e-99 305
MsG0280007204.01.T01 MTR_4g126950 40.576 382 201 7 78 442 80 452 8.07e-99 304
MsG0280007204.01.T01 MTR_5g059400 43.220 354 181 6 94 437 173 516 1.06e-96 301
MsG0280007204.01.T01 MTR_1g116130 43.220 354 181 6 94 437 173 516 1.06e-96 301
MsG0280007204.01.T01 MTR_3g090120 41.834 349 185 5 94 438 127 461 3.43e-95 295
MsG0280007204.01.T01 MTR_0136s0010 42.693 349 185 5 96 437 170 510 2.80e-94 294
MsG0280007204.01.T01 MTR_7g093450 42.210 353 187 5 96 440 248 591 1.36e-93 295
MsG0280007204.01.T01 MTR_4g121560 38.810 353 205 4 95 442 113 459 4.51e-92 286
MsG0280007204.01.T01 MTR_2g022580 95.200 125 6 0 155 279 1 125 2.04e-82 250
MsG0280007204.01.T01 MTR_5g071350 37.466 363 185 9 96 436 58 400 1.46e-78 249
MsG0280007204.01.T01 MTR_3g464570 37.143 350 191 7 96 434 43 374 1.48e-77 246
MsG0280007204.01.T01 MTR_8g463790 35.629 421 230 14 36 438 14 411 1.12e-74 240
MsG0280007204.01.T01 MTR_4g016940 35.392 421 235 12 30 436 30 427 1.47e-74 240
MsG0280007204.01.T01 MTR_3g070900 36.134 357 205 8 94 437 104 450 3.18e-74 240
MsG0280007204.01.T01 MTR_4g014440 38.196 377 195 13 77 434 48 405 5.14e-74 238
MsG0280007204.01.T01 MTR_5g033800 44.534 247 128 3 89 333 141 380 6.47e-73 234
MsG0280007204.01.T01 MTR_3g021060 38.040 347 188 8 90 434 40 361 2.90e-72 232
MsG0280007204.01.T01 MTR_5g083260 35.322 419 238 13 33 434 20 422 2.97e-72 234
MsG0280007204.01.T01 MTR_5g034810 36.994 346 191 7 95 438 34 354 7.35e-72 231
MsG0280007204.01.T01 MTR_3g071650 38.068 352 193 9 96 434 89 428 1.48e-71 233
MsG0280007204.01.T01 MTR_1g050448 35.447 347 194 7 96 436 53 375 7.52e-71 229
MsG0280007204.01.T01 MTR_2g073510 36.919 344 191 7 96 436 33 353 3.36e-70 226
MsG0280007204.01.T01 MTR_3g035830 36.494 348 192 8 90 434 25 346 1.86e-69 224
MsG0280007204.01.T01 MTR_5g082880 37.569 362 192 11 96 437 165 512 1.97e-69 229
MsG0280007204.01.T01 MTR_3g049330 36.812 345 193 7 95 437 30 351 3.06e-69 224
MsG0280007204.01.T01 MTR_2g091175 37.209 344 188 8 96 437 50 367 1.07e-68 223
MsG0280007204.01.T01 MTR_7g068920 36.264 364 201 9 89 436 73 421 1.56e-68 224
MsG0280007204.01.T01 MTR_2g015720 35.484 341 196 5 94 434 40 356 1.58e-68 222
MsG0280007204.01.T01 MTR_7g070060 36.544 353 201 9 96 434 64 407 8.24e-68 222
MsG0280007204.01.T01 MTR_4g079700 34.605 367 208 9 69 434 26 361 3.85e-67 219
MsG0280007204.01.T01 MTR_3g021090 35.294 357 202 8 90 443 25 355 2.56e-66 218
MsG0280007204.01.T01 MTR_4g088030 34.278 353 197 9 91 437 28 351 5.69e-66 216
MsG0280007204.01.T01 MTR_1g112210 33.871 372 206 11 76 434 36 380 1.35e-64 213
MsG0280007204.01.T01 MTR_4g087730 33.043 345 206 6 94 437 43 363 5.15e-64 211
MsG0280007204.01.T01 MTR_1g111010 37.791 344 179 12 96 437 32 342 4.21e-63 208
MsG0280007204.01.T01 MTR_4g014430 35.127 353 203 10 93 433 105 443 5.60e-63 211
MsG0280007204.01.T01 MTR_1g112210 34.054 370 195 10 76 434 36 367 6.44e-63 208
MsG0280007204.01.T01 MTR_2g073500 36.571 350 184 9 96 438 29 347 1.28e-62 207
MsG0280007204.01.T01 MTR_3g464570 35.315 286 156 7 160 434 3 270 3.10e-53 180
MsG0280007204.01.T01 MTR_8g093870 32.493 357 212 12 92 434 129 470 4.10e-51 180
MsG0280007204.01.T01 MTR_6g016880 30.569 422 251 14 35 436 20 419 4.88e-50 176
MsG0280007204.01.T01 MTR_7g070060 38.017 242 138 6 96 333 64 297 6.65e-50 172
MsG0280007204.01.T01 MTR_7g019120 30.266 413 257 12 35 432 20 416 3.51e-49 174
MsG0280007204.01.T01 MTR_5g035150 32.967 364 212 13 96 440 85 435 9.57e-49 172
MsG0280007204.01.T01 MTR_4g125060 32.479 351 214 11 95 434 170 508 1.41e-48 174
MsG0280007204.01.T01 MTR_4g125060 32.479 351 214 11 95 434 131 469 1.48e-48 173
MsG0280007204.01.T01 MTR_4g125060 32.479 351 214 11 95 434 199 537 4.74e-48 173
MsG0280007204.01.T01 MTR_5g035090 33.607 366 205 14 96 440 83 431 8.07e-48 170
MsG0280007204.01.T01 MTR_1g076690 32.425 367 205 10 95 436 222 570 2.01e-47 172
MsG0280007204.01.T01 MTR_6g061710 30.749 374 218 9 95 444 166 522 2.26e-47 171
MsG0280007204.01.T01 MTR_5g035080 31.956 363 216 10 96 440 75 424 2.41e-47 169
MsG0280007204.01.T01 MTR_8g027900 30.532 357 222 11 96 437 211 556 2.60e-47 171
MsG0280007204.01.T01 MTR_8g104970 32.000 400 227 15 59 436 89 465 4.69e-47 169
MsG0280007204.01.T01 MTR_3g109840 30.805 435 241 19 30 438 17 417 5.08e-47 167
MsG0280007204.01.T01 MTR_6g016875 32.642 386 215 13 84 443 50 416 7.51e-46 164
MsG0280007204.01.T01 MTR_7g070060 33.667 300 177 8 148 434 15 305 1.58e-45 160
MsG0280007204.01.T01 MTR_7g033230 32.609 368 203 14 96 438 264 611 1.67e-44 164
MsG0280007204.01.T01 MTR_7g033230 32.609 368 203 14 96 438 334 681 4.25e-44 164
MsG0280007204.01.T01 MTR_5g035070 32.133 361 219 11 96 440 87 437 5.41e-41 152
MsG0280007204.01.T01 MTR_2g016060 30.110 362 218 12 97 438 56 402 1.98e-39 147
MsG0280007204.01.T01 MTR_4g092830 30.303 363 215 13 96 437 48 393 7.81e-39 145
MsG0280007204.01.T01 MTR_6g007777 28.205 351 233 11 96 436 116 457 7.75e-38 144
MsG0280007204.01.T01 MTR_8g099300 28.571 364 221 13 96 437 74 420 5.22e-36 137
MsG0280007204.01.T01 MTR_6g016240 27.596 366 224 15 90 432 65 412 6.17e-36 137
MsG0280007204.01.T01 MTR_5g069320 27.410 332 153 11 113 429 128 386 2.09e-28 116
MsG0280007204.01.T01 MTR_7g019140 36.424 151 94 1 35 185 20 168 8.58e-27 106
MsG0280007204.01.T01 MTR_5g035120 36.842 171 102 3 18 187 1 166 3.33e-26 104
MsG0280007204.01.T01 MTR_5g035140 32.422 256 135 12 213 442 28 271 1.29e-20 91.7
MsG0280007204.01.T01 MTR_7g029590 34.409 93 54 1 257 342 8 100 1.82e-13 70.1
MsG0280007204.01.T01 MTR_3g021150 29.365 126 74 4 294 416 1 114 6.06e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007204.01.T01 AT3G06080 62.000 450 153 5 9 441 2 450 0.0 585
MsG0280007204.01.T01 AT5G19160 61.607 448 158 6 6 440 2 448 0.0 581
MsG0280007204.01.T01 AT3G06080 62.941 340 110 4 9 333 2 340 1.60e-154 442
MsG0280007204.01.T01 AT5G19160 61.791 335 121 3 6 333 2 336 2.56e-153 439
MsG0280007204.01.T01 AT5G06230 49.573 351 162 3 96 437 21 365 2.64e-122 361
MsG0280007204.01.T01 AT5G06230 49.573 351 162 3 96 437 62 406 5.26e-122 362
MsG0280007204.01.T01 AT3G11570 50.307 326 159 2 112 437 98 420 1.65e-114 343
MsG0280007204.01.T01 AT3G62390 44.886 352 179 6 90 437 132 472 2.23e-103 316
MsG0280007204.01.T01 AT1G60790 41.371 394 211 7 60 445 160 541 3.75e-103 318
MsG0280007204.01.T01 AT5G20590 44.476 353 182 6 91 437 136 480 9.22e-102 312
MsG0280007204.01.T01 AT1G48880 43.732 343 174 5 96 436 115 440 1.13e-97 300
MsG0280007204.01.T01 AT5G06230 52.610 249 112 1 96 338 62 310 2.68e-95 290
MsG0280007204.01.T01 AT3G12060 39.560 364 207 4 80 437 180 536 1.15e-93 294
MsG0280007204.01.T01 AT5G06700 40.278 360 198 5 86 437 245 595 2.44e-92 291
MsG0280007204.01.T01 AT5G49340 40.678 354 187 8 96 437 100 442 1.04e-88 278
MsG0280007204.01.T01 AT3G62390 46.939 245 128 1 90 334 132 374 1.82e-79 253
MsG0280007204.01.T01 AT2G40160 36.782 435 224 16 36 440 14 427 3.93e-79 253
MsG0280007204.01.T01 AT2G40150 38.082 365 199 7 88 434 63 418 4.24e-79 252
MsG0280007204.01.T01 AT2G40160 36.782 435 223 17 36 440 14 426 4.27e-79 252
MsG0280007204.01.T01 AT2G30010 38.398 362 183 10 96 437 56 397 1.88e-78 249
MsG0280007204.01.T01 AT2G30010 38.398 362 183 10 96 437 99 440 2.78e-78 250
MsG0280007204.01.T01 AT3G11030 38.764 356 190 11 94 434 104 446 3.33e-77 248
MsG0280007204.01.T01 AT5G58600 37.288 354 192 7 96 437 66 401 3.84e-77 246
MsG0280007204.01.T01 AT3G55990 38.606 373 202 11 78 437 126 484 1.05e-76 248
MsG0280007204.01.T01 AT2G30900 39.710 345 178 11 96 434 43 363 2.80e-76 243
MsG0280007204.01.T01 AT1G78710 37.176 347 190 8 96 439 38 359 3.14e-74 237
MsG0280007204.01.T01 AT1G73140 37.534 373 203 11 80 438 51 407 3.44e-73 236
MsG0280007204.01.T01 AT1G29050 33.430 344 206 5 91 434 56 376 9.58e-73 234
MsG0280007204.01.T01 AT5G20590 45.082 244 132 2 91 333 136 378 1.19e-72 234
MsG0280007204.01.T01 AT2G38320 33.684 380 221 8 81 442 44 410 1.77e-72 234
MsG0280007204.01.T01 AT5G01360 34.853 373 212 10 81 434 16 376 2.48e-71 230
MsG0280007204.01.T01 AT5G01360 34.853 373 212 10 81 434 72 432 8.48e-71 231
MsG0280007204.01.T01 AT2G42570 36.842 342 187 8 96 434 47 362 2.17e-70 228
MsG0280007204.01.T01 AT2G34070 33.918 342 200 7 95 434 64 381 1.70e-69 226
MsG0280007204.01.T01 AT3G54260 36.648 352 186 9 96 437 51 375 2.73e-69 225
MsG0280007204.01.T01 AT3G14850 36.812 345 194 6 91 433 29 351 5.33e-68 221
MsG0280007204.01.T01 AT2G31110 36.207 348 189 11 92 434 41 360 2.53e-67 219
MsG0280007204.01.T01 AT2G40320 33.095 420 244 14 33 434 20 420 1.21e-65 217
MsG0280007204.01.T01 AT5G01620 34.366 355 204 10 96 436 118 457 1.01e-63 213
MsG0280007204.01.T01 AT5G01620 34.366 355 204 10 96 436 110 449 1.15e-63 213
MsG0280007204.01.T01 AT5G01620 34.366 355 204 10 96 436 110 449 1.15e-63 213
MsG0280007204.01.T01 AT2G38320 32.738 336 196 7 124 442 5 327 3.59e-60 199
MsG0280007204.01.T01 AT2G40160 36.306 314 169 9 36 333 14 312 3.75e-58 194
MsG0280007204.01.T01 AT1G01430 34.239 368 204 13 96 440 99 451 3.28e-55 190
MsG0280007204.01.T01 AT5G58600 37.975 237 133 3 96 331 66 289 2.93e-54 183
MsG0280007204.01.T01 AT1G70230 33.799 358 205 13 96 441 79 416 5.05e-54 186
MsG0280007204.01.T01 AT5G64020 33.609 363 204 14 96 434 57 406 1.17e-50 177
MsG0280007204.01.T01 AT1G78710 31.124 347 158 9 96 439 31 299 2.94e-50 173
MsG0280007204.01.T01 AT3G02440 34.648 355 197 14 96 432 127 464 4.46e-50 177
MsG0280007204.01.T01 AT3G02440 34.648 355 197 14 96 432 135 472 5.05e-50 177
MsG0280007204.01.T01 AT2G30900 39.485 233 123 7 96 325 43 260 7.10e-50 171
MsG0280007204.01.T01 AT5G51640 31.233 365 217 8 96 438 138 490 7.51e-50 177
MsG0280007204.01.T01 AT4G25360 32.231 363 211 9 96 436 175 524 8.27e-49 175
MsG0280007204.01.T01 AT4G25360 32.231 363 211 9 96 436 175 524 8.27e-49 175
MsG0280007204.01.T01 AT5G15890 32.514 366 215 13 84 436 176 522 1.25e-48 174
MsG0280007204.01.T01 AT5G20680 30.252 357 218 13 95 436 117 457 5.67e-47 168
MsG0280007204.01.T01 AT5G20680 30.252 357 218 13 95 436 193 533 1.97e-46 168
MsG0280007204.01.T01 AT5G20680 30.252 357 218 13 95 436 211 551 2.23e-46 169
MsG0280007204.01.T01 AT5G20680 30.252 357 218 13 95 436 211 551 2.23e-46 169
MsG0280007204.01.T01 AT5G20680 30.252 357 218 13 95 436 211 551 2.23e-46 169
MsG0280007204.01.T01 AT5G20680 30.252 357 218 13 95 436 211 551 2.23e-46 169
MsG0280007204.01.T01 AT2G31110 36.017 236 135 5 92 326 41 261 2.95e-46 161
MsG0280007204.01.T01 AT4G23790 32.692 416 237 16 44 432 24 423 3.82e-46 166
MsG0280007204.01.T01 AT2G14530 31.172 401 210 17 73 434 31 404 3.89e-46 165
MsG0280007204.01.T01 AT4G01080 31.768 362 212 13 96 440 91 434 9.28e-46 165
MsG0280007204.01.T01 AT5G64470 32.303 356 212 13 96 437 55 395 1.01e-44 161
MsG0280007204.01.T01 AT5G64470 31.856 361 213 14 96 437 55 401 1.23e-44 161
MsG0280007204.01.T01 AT2G37720 31.759 381 207 15 79 434 128 480 8.05e-43 157
MsG0280007204.01.T01 AT2G34070 30.258 271 163 7 166 434 1 247 1.36e-41 148
MsG0280007204.01.T01 AT5G15900 29.917 361 227 13 94 440 65 413 1.94e-41 152
MsG0280007204.01.T01 AT5G15900 29.917 361 227 13 94 440 84 432 2.24e-41 153
MsG0280007204.01.T01 AT4G11090 30.789 380 215 15 89 441 72 430 3.33e-41 152
MsG0280007204.01.T01 AT3G28150 31.549 355 215 14 96 436 70 410 7.97e-39 145
MsG0280007204.01.T01 AT3G14850 32.963 270 157 6 166 433 1 248 9.95e-38 138
MsG0280007204.01.T01 AT2G31110 34.222 225 128 6 212 434 6 212 1.54e-32 123
MsG0280007204.01.T01 AT5G64470 30.682 264 159 10 96 346 55 307 4.75e-31 122
MsG0280007204.01.T01 AT5G64470 30.682 264 159 10 96 346 55 307 7.30e-31 121

Find 99 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAAATTTGGTATTATTTC+TGG 0.110013 2:+11923666 MsG0280007204.01.T01:CDS
GCATTCATCTAAATATTATT+TGG 0.117841 2:+11928012 MsG0280007204.01.T01:CDS
AACCCTTTGTGCTTTGTAAT+TGG 0.135491 2:-11926268 None:intergenic
CTTATGCTCCTGTGCATTTC+AGG 0.166984 2:+11927112 MsG0280007204.01.T01:CDS
GATTGCAAGTTTCTTGATTT+AGG 0.192438 2:+11923825 MsG0280007204.01.T01:CDS
ACTTAACTTCCTTACCTTCT+TGG 0.199231 2:-11926987 None:intergenic
TAAGGAAGGTGAAGCGTTTA+AGG 0.202286 2:+11923550 MsG0280007204.01.T01:CDS
AGAGAAGTTGATGGTAAATT+TGG 0.205983 2:+11923654 MsG0280007204.01.T01:CDS
AATATGAAACTTCTCATAAT+TGG 0.221639 2:+11928131 MsG0280007204.01.T01:CDS
GTGACTTGTTTGAAGGTAAT+TGG 0.223641 2:+11923766 MsG0280007204.01.T01:CDS
AGTTTCTTGATTTAGGATTT+AGG 0.238726 2:+11923832 MsG0280007204.01.T01:CDS
CTGATTTGTTCTACACAAAA+TGG 0.253516 2:+11923874 MsG0280007204.01.T01:CDS
TCATAGATTGATTCCTTGTT+AGG 0.287705 2:-11926232 None:intergenic
GGATTTAGGTGTTCTGAAAA+TGG 0.288757 2:+11923846 MsG0280007204.01.T01:CDS
TGGTATTGTTTGAAACATTA+AGG 0.300436 2:+11923532 MsG0280007204.01.T01:CDS
AAGGTTGTTTGAACCGTCTT+TGG 0.304388 2:+11923569 MsG0280007204.01.T01:CDS
TACAAAGCACAAAGGGTTCT+TGG 0.307768 2:+11926273 MsG0280007204.01.T01:CDS
CTAGGCAAGTTACAATCTTT+AGG 0.308318 2:-11923906 None:intergenic
AACTGTGACCAGTTATCTTT+AGG 0.320885 2:-11927887 None:intergenic
TGCAGCCATTGGTGTCTTCC+TGG 0.323704 2:+11928064 MsG0280007204.01.T01:CDS
ATGTAGTAAACACAAGTATT+AGG 0.332514 2:-11923608 None:intergenic
CATTCATCTAAATATTATTT+GGG 0.334099 2:+11928013 MsG0280007204.01.T01:CDS
GAATCAATCTATGAAGTTAA+TGG 0.337981 2:+11926241 MsG0280007204.01.T01:CDS
ACCCTTTGTGCTTTGTAATT+GGG 0.341873 2:-11926267 None:intergenic
ATGGAGAGATGCTGATGTTT+TGG 0.343065 2:+11926438 MsG0280007204.01.T01:CDS
CTGTTGACACAACATTGAAT+TGG 0.345167 2:+11927043 MsG0280007204.01.T01:CDS
GACACCAATGGCTGCAATCT+TGG 0.348727 2:-11928057 None:intergenic
TGTTTGAAGGTAATTGGGTT+TGG 0.355399 2:+11923772 MsG0280007204.01.T01:CDS
AACCATAAAACTGGATCAAA+TGG 0.358268 2:+11926399 MsG0280007204.01.T01:CDS
AGTAGCTCATTCCATGTATC+AGG 0.359828 2:-11928091 None:intergenic
TACATGCTGTTTCTTCTACT+TGG 0.360888 2:+11923626 MsG0280007204.01.T01:CDS
ATCAAATGGATTGGAACTCT+TGG 0.376964 2:+11926413 MsG0280007204.01.T01:CDS
TGACTTGTTTGAAGGTAATT+GGG 0.378413 2:+11923767 MsG0280007204.01.T01:CDS
AGGATTGGATTACCATTTGA+TGG 0.383240 2:-11926497 None:intergenic
GATTAGGACAACCATAAAAC+TGG 0.387433 2:+11926390 MsG0280007204.01.T01:CDS
GTTTGAAGGTAATTGGGTTT+GGG 0.389065 2:+11923773 MsG0280007204.01.T01:CDS
CATTGGTACCTAAAGATAAC+TGG 0.393014 2:+11927879 MsG0280007204.01.T01:CDS
GAAAGATGGAAACTGTCATT+TGG 0.396097 2:+11927832 MsG0280007204.01.T01:CDS
GTTGAGTTTCTTGATGAAAA+GGG 0.400243 2:+11923735 MsG0280007204.01.T01:CDS
GTTCTTGGTGTTCAAATTCA+AGG 0.404377 2:+11926288 MsG0280007204.01.T01:CDS
TGGATTGGAACTCTTGGAAA+TGG 0.404711 2:+11926419 MsG0280007204.01.T01:CDS
TGGAGCTCTATAGTACTCTA+TGG 0.406736 2:-11926323 None:intergenic
GTGTTCTAATATTGCAGAAT+TGG 0.409156 2:-11927918 None:intergenic
GAACCGTCTTTGGTTGTTGT+TGG 0.413530 2:+11923579 MsG0280007204.01.T01:CDS
AGTTGAGTTTCTTGATGAAA+AGG 0.415389 2:+11923734 MsG0280007204.01.T01:CDS
GTATTTGCTGGGGACTCAAT+AGG 0.430696 2:+11926163 MsG0280007204.01.T01:CDS
AACAAACGCATAGTATTTGC+TGG 0.433036 2:+11926151 MsG0280007204.01.T01:CDS
CTGCTTTGTAACACAAGAAA+TGG 0.438428 2:-11926343 None:intergenic
GTCAATTCAAGAGGTTTACT+TGG 0.446138 2:+11923688 MsG0280007204.01.T01:CDS
GGAAGTTAAGTTGGAAATGA+AGG 0.446845 2:+11926999 MsG0280007204.01.T01:CDS
TATCATACAGAGGTGGAGAT+TGG 0.450586 2:+11927807 MsG0280007204.01.T01:intron
ATGTCAGGTCAGAGAAAAGA+TGG 0.468153 2:+11927989 MsG0280007204.01.T01:CDS
CATTTCTTGTGTTACAAAGC+AGG 0.472850 2:+11926344 MsG0280007204.01.T01:CDS
GGTGGAGATTGGAAGAAAGA+TGG 0.478645 2:+11927818 MsG0280007204.01.T01:CDS
AGAAGGTAAGGAAGTTAAGT+TGG 0.486148 2:+11926990 MsG0280007204.01.T01:CDS
ACCAATGAGGATCCAAGCTC+TGG 0.488691 2:-11927863 None:intergenic
ATTGTTTGAAACATTAAGGA+AGG 0.490629 2:+11923536 MsG0280007204.01.T01:CDS
TAAAACTGGATCAAATGGAT+TGG 0.491103 2:+11926404 MsG0280007204.01.T01:CDS
GTAATTGGGTTTGGGATGAA+AGG 0.505434 2:+11923781 MsG0280007204.01.T01:CDS
ACCAGAGCTTGGATCCTCAT+TGG 0.505585 2:+11927862 MsG0280007204.01.T01:CDS
TTGAATGTAACAAGGATGTC+AGG 0.507989 2:+11927974 MsG0280007204.01.T01:CDS
CTAAAGATTGTAACTTGCCT+AGG 0.508492 2:+11923907 MsG0280007204.01.T01:CDS
AAGAAAACTTGAGTCTTGCT+AGG 0.508568 2:-11927084 None:intergenic
ATTCAATGCAACAATGATGT+TGG 0.510083 2:+11926117 MsG0280007204.01.T01:CDS
CTCAATAGGAAGAAACCAAT+GGG 0.514807 2:+11926177 MsG0280007204.01.T01:CDS
ATAATGAGAAAACCATCAAA+TGG 0.518885 2:+11926485 MsG0280007204.01.T01:CDS
GATGGGTGTGACTTGTTTGA+AGG 0.519045 2:+11923759 MsG0280007204.01.T01:CDS
CCATGTCTTGTTCCACGTGT+TGG 0.520052 2:-11923512 None:intergenic
TTGTTATTTCCAAGAAGGTA+AGG 0.521525 2:+11926978 MsG0280007204.01.T01:CDS
GCCCAATTACAAAGCACAAA+GGG 0.521622 2:+11926266 MsG0280007204.01.T01:CDS
AGGGGTTGTTATTTCCAAGA+AGG 0.525289 2:+11926973 MsG0280007204.01.T01:intron
TTGGAAACACTACCAGAGCT+TGG 0.526624 2:+11927851 MsG0280007204.01.T01:CDS
GTCGCCAAGATTGCAGCCAT+TGG 0.527067 2:+11928053 MsG0280007204.01.T01:CDS
CAAGAGGTTTACTTGGTCAA+CGG 0.527494 2:+11923695 MsG0280007204.01.T01:CDS
TTCTTAATACAGGACATTGG+TGG 0.539861 2:+11926461 MsG0280007204.01.T01:CDS
TTCCTGGTGTACCTGATACA+TGG 0.549436 2:+11928080 MsG0280007204.01.T01:CDS
TGCATAGTAGTGATTCCCAT+TGG 0.552012 2:-11926192 None:intergenic
TGTTCTACACAAAATGGAGA+TGG 0.555968 2:+11923880 MsG0280007204.01.T01:CDS
TTACAAAGCAGGCCTCCTAA+AGG 0.558554 2:+11926355 MsG0280007204.01.T01:CDS
TTTCTTGATGAAAAGGGTGA+TGG 0.568950 2:+11923741 MsG0280007204.01.T01:CDS
CTCTTCTGAAGTTCCTAACA+AGG 0.569098 2:+11926219 MsG0280007204.01.T01:CDS
ACAAACGCATAGTATTTGCT+GGG 0.583501 2:+11926152 MsG0280007204.01.T01:CDS
TTCTTGATGAAAAGGGTGAT+GGG 0.583903 2:+11923742 MsG0280007204.01.T01:CDS
TTATTTCTGGTCAATTCAAG+AGG 0.599043 2:+11923679 MsG0280007204.01.T01:CDS
TTCCATGTATCAGGTACACC+AGG 0.599904 2:-11928082 None:intergenic
ACTCAATAGGAAGAAACCAA+TGG 0.604183 2:+11926176 MsG0280007204.01.T01:CDS
AGGTAGAAGATGCATATAAG+AGG 0.605973 2:+11927019 MsG0280007204.01.T01:CDS
AATCCAACAACAACCAAAGA+CGG 0.610802 2:-11923582 None:intergenic
TGGCTGCAATCTTGGCGACG+TGG 0.614392 2:-11928049 None:intergenic
ATTACAAACCTGAAATGCAC+AGG 0.616588 2:-11927120 None:intergenic
CCAACACGTGGAACAAGACA+TGG 0.618826 2:+11923512 MsG0280007204.01.T01:CDS
TGGTTCTTAATACAGGACAT+TGG 0.619589 2:+11926458 MsG0280007204.01.T01:CDS
TGAAGGTATTGAATGTAACA+AGG 0.629780 2:+11927966 MsG0280007204.01.T01:CDS
GTTATCTTTAGGTACCAATG+AGG 0.640047 2:-11927876 None:intergenic
TGTCAGGTCAGAGAAAAGAT+GGG 0.647591 2:+11927990 MsG0280007204.01.T01:CDS
AGCCCAATTACAAAGCACAA+AGG 0.651187 2:+11926265 MsG0280007204.01.T01:CDS
GTACACCAGGAAGACACCAA+TGG 0.683720 2:-11928069 None:intergenic
AAATTCTTCAAACCAACACG+TGG 0.693852 2:+11923500 MsG0280007204.01.T01:CDS
CAAACGCATAGTATTTGCTG+GGG 0.724916 2:+11926153 MsG0280007204.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAAAATTGAAGAT+AGG + Chr2:11927599-11927618 MsG0280007204.01.T01:intron 10.0%
!!! GAATTATTTTTAAATCAAAT+AGG - Chr2:11925716-11925735 None:intergenic 10.0%
!!! TTTTAAAAAAATTGAAGATA+GGG + Chr2:11927600-11927619 MsG0280007204.01.T01:intron 10.0%
!! AAATTAGAGTAATAAAAACA+AGG - Chr2:11926880-11926899 None:intergenic 15.0%
!! CAATTAAAAAAAAACTAATG+TGG - Chr2:11926762-11926781 None:intergenic 15.0%
!! CATTCATCTAAATATTATTT+GGG + Chr2:11928013-11928032 MsG0280007204.01.T01:CDS 15.0%
!!! ATATGATTCAATTTGTTATT+TGG + Chr2:11925921-11925940 MsG0280007204.01.T01:intron 15.0%
!!! ATGAACAAATCATTTATTTT+CGG - Chr2:11924287-11924306 None:intergenic 15.0%
!!! TATGATTCAATTTGTTATTT+GGG + Chr2:11925922-11925941 MsG0280007204.01.T01:intron 15.0%
!! AAAACAATTTGACCATTTAT+TGG + Chr2:11924527-11924546 MsG0280007204.01.T01:intron 20.0%
!! AAAATGGATAAATGTCATAT+AGG - Chr2:11926914-11926933 None:intergenic 20.0%
!! AACAAACCTAAAAATAAAGA+AGG - Chr2:11926520-11926539 None:intergenic 20.0%
!! AATATGAAACTTCTCATAAT+TGG + Chr2:11928131-11928150 MsG0280007204.01.T01:CDS 20.0%
!! AATGTTATGATAGAAAGAAA+GGG + Chr2:11925176-11925195 MsG0280007204.01.T01:intron 20.0%
!! AATTTATCTCTACCTTATAT+TGG + Chr2:11924582-11924601 MsG0280007204.01.T01:intron 20.0%
!! ATATAGTTTATCAGTAAATG+AGG + Chr2:11924636-11924655 MsG0280007204.01.T01:intron 20.0%
!! CATAACTTATAAAGAAAATG+AGG - Chr2:11925450-11925469 None:intergenic 20.0%
!! GATTTGAAAATGATGTAAAA+TGG - Chr2:11924553-11924572 None:intergenic 20.0%
!! GCATTCATCTAAATATTATT+TGG + Chr2:11928012-11928031 MsG0280007204.01.T01:CDS 20.0%
!! TAAACTATATTGACCAATAA+AGG - Chr2:11924626-11924645 None:intergenic 20.0%
!! TATTCAGTAAACTATCAAAT+TGG - Chr2:11925019-11925038 None:intergenic 20.0%
!! TGAAGTAAATTTCTAACTAT+AGG + Chr2:11926072-11926091 MsG0280007204.01.T01:intron 20.0%
!!! AAATAACACAACTTTTTGTA+TGG + Chr2:11925504-11925523 MsG0280007204.01.T01:intron 20.0%
!!! AACATTTTTTTCAACCAAAA+AGG - Chr2:11924753-11924772 None:intergenic 20.0%
!!! AGAAACTTTTGATAAACATA+AGG + Chr2:11924934-11924953 MsG0280007204.01.T01:intron 20.0%
!!! GTAATATATTGATAGTAAAC+TGG + Chr2:11924777-11924796 MsG0280007204.01.T01:intron 20.0%
!!! TAGCAAACTTAAATTTTAGT+CGG - Chr2:11926828-11926847 None:intergenic 20.0%
! AAAGAGATAGAGAGAAAATA+TGG + Chr2:11925060-11925079 MsG0280007204.01.T01:intron 25.0%
! AACTGATTAAGAAAAGAGAT+AGG + Chr2:11923984-11924003 MsG0280007204.01.T01:intron 25.0%
! AAGGAAAATTGAAGTCATTA+GGG - Chr2:11927152-11927171 None:intergenic 25.0%
! AATACTAGGTAACATTTCAA+GGG - Chr2:11924694-11924713 None:intergenic 25.0%
! AATTGTCATGAGATGAAAAT+TGG + Chr2:11924088-11924107 MsG0280007204.01.T01:intron 25.0%
! ACCATAAATTGTCATTGAAA+TGG + Chr2:11925475-11925494 MsG0280007204.01.T01:intron 25.0%
! ACCATTTCAATGACAATTTA+TGG - Chr2:11925479-11925498 None:intergenic 25.0%
! ACCTAAAAATAAAGAAGGAT+TGG - Chr2:11926515-11926534 None:intergenic 25.0%
! ATAATGAGAAAACCATCAAA+TGG + Chr2:11926485-11926504 MsG0280007204.01.T01:CDS 25.0%
! ATGTAGTAAACACAAGTATT+AGG - Chr2:11923611-11923630 None:intergenic 25.0%
! CAATTGCCATATTATTGATA+AGG + Chr2:11924453-11924472 MsG0280007204.01.T01:intron 25.0%
! CACATGATAAAAAAGTTTAG+AGG - Chr2:11926588-11926607 None:intergenic 25.0%
! CATATTATTGATAAGGATGA+GGG + Chr2:11924460-11924479 MsG0280007204.01.T01:intron 25.0%
! CTTATCAATAATATGGCAAT+TGG - Chr2:11924455-11924474 None:intergenic 25.0%
! GAATCAATCTATGAAGTTAA+TGG + Chr2:11926241-11926260 MsG0280007204.01.T01:CDS 25.0%
! GAATGTTATGATAGAAAGAA+AGG + Chr2:11925175-11925194 MsG0280007204.01.T01:intron 25.0%
! GCATAGAATTTCTTATTGTA+AGG + Chr2:11927386-11927405 MsG0280007204.01.T01:intron 25.0%
! GGTAAATTTGGTATTATTTC+TGG + Chr2:11923666-11923685 MsG0280007204.01.T01:CDS 25.0%
! GTTACAAAGTAATGATAAAG+AGG + Chr2:11925095-11925114 MsG0280007204.01.T01:intron 25.0%
! TAAACGATACAATCCTTTAT+TGG + Chr2:11924610-11924629 MsG0280007204.01.T01:intron 25.0%
! TCCTTTCTACATACAAAAAA+TGG - Chr2:11926930-11926949 None:intergenic 25.0%
! TCGAATAAGATTACATTTAG+TGG + Chr2:11924250-11924269 MsG0280007204.01.T01:intron 25.0%
! TTCTAATAGTAATAACTCGT+AGG - Chr2:11926672-11926691 None:intergenic 25.0%
! TTTCTTATTGTAAGGATGTA+AGG + Chr2:11927394-11927413 MsG0280007204.01.T01:intron 25.0%
!! AAATCAATGCCTTTTATAGA+TGG + Chr2:11925288-11925307 MsG0280007204.01.T01:intron 25.0%
!! ACAATGTTTTGTATAAAGAG+TGG - Chr2:11925660-11925679 None:intergenic 25.0%
!! AGAGAAAATATGGTATTGAA+CGG + Chr2:11925070-11925089 MsG0280007204.01.T01:intron 25.0%
!! AGTTTCTTGATTTAGGATTT+AGG + Chr2:11923832-11923851 MsG0280007204.01.T01:CDS 25.0%
!! ATTGTTTGAAACATTAAGGA+AGG + Chr2:11923536-11923555 MsG0280007204.01.T01:CDS 25.0%
!! ATTTTACAACAAAGTCTGAA+AGG + Chr2:11927656-11927675 MsG0280007204.01.T01:intron 25.0%
!! CTTTATCTATTTCTCTTTCA+AGG - Chr2:11925129-11925148 None:intergenic 25.0%
!! GTAGTTTTCTTGTAATTTCT+TGG - Chr2:11925320-11925339 None:intergenic 25.0%
!! TGGTATTGTTTGAAACATTA+AGG + Chr2:11923532-11923551 MsG0280007204.01.T01:CDS 25.0%
!! TGGTATTTTCCATCTATAAA+AGG - Chr2:11925300-11925319 None:intergenic 25.0%
!! TTGATTCGAAAGTTAAACAT+GGG - Chr2:11925549-11925568 None:intergenic 25.0%
!! TTTCAGACTTTGTTGTAAAA+TGG - Chr2:11927657-11927676 None:intergenic 25.0%
!! TTTTAATGCAAACGTACATA+AGG - Chr2:11923964-11923983 None:intergenic 25.0%
!!! AAATTTTTTCATGATTGTCC+AGG + Chr2:11926953-11926972 MsG0280007204.01.T01:intron 25.0%
!!! AATGGTCAAATTGTTTTACA+TGG - Chr2:11924524-11924543 None:intergenic 25.0%
!!! AATTTTTTCATGATTGTCCA+GGG + Chr2:11926954-11926973 MsG0280007204.01.T01:intron 25.0%
!!! AGCAAACTTAAATTTTAGTC+GGG - Chr2:11926827-11926846 None:intergenic 25.0%
!!! CTATGACTGTTTTAAAATAC+GGG - Chr2:11927487-11927506 None:intergenic 25.0%
!!! CTCAAGTTTTGTATGTATAT+TGG + Chr2:11924039-11924058 MsG0280007204.01.T01:intron 25.0%
!!! CTCTAAACTTTTTTATCATG+TGG + Chr2:11926586-11926605 MsG0280007204.01.T01:intron 25.0%
!!! GCTATGACTGTTTTAAAATA+CGG - Chr2:11927488-11927507 None:intergenic 25.0%
!!! TCCAATCCTTCTTTATTTTT+AGG + Chr2:11926511-11926530 MsG0280007204.01.T01:intron 25.0%
!!! TCCATTTTTTGTATGTAGAA+AGG + Chr2:11926926-11926945 MsG0280007204.01.T01:intron 25.0%
!!! TTAAGTTTGCTATATTTGCA+AGG + Chr2:11926836-11926855 MsG0280007204.01.T01:intron 25.0%
AAAAACAAAAACGTGCAGAA+CGG + Chr2:11926690-11926709 MsG0280007204.01.T01:intron 30.0%
AACCATAAAACTGGATCAAA+TGG + Chr2:11926399-11926418 MsG0280007204.01.T01:CDS 30.0%
AAGTGATACAAATAGAGTGA+AGG - Chr2:11927171-11927190 None:intergenic 30.0%
ACTATGCTATGAAACTTTCA+AGG - Chr2:11924362-11924381 None:intergenic 30.0%
ACTTTCTCTCTCTATTGTAT+TGG + Chr2:11925410-11925429 MsG0280007204.01.T01:intron 30.0%
AGAGAAATAGATAAAGAGAG+TGG + Chr2:11925133-11925152 MsG0280007204.01.T01:intron 30.0%
AGTTGAGTTTCTTGATGAAA+AGG + Chr2:11923734-11923753 MsG0280007204.01.T01:CDS 30.0%
ATCACTTGTATTATTCTCCT+AGG + Chr2:11927184-11927203 MsG0280007204.01.T01:intron 30.0%
ATTCAATGCAACAATGATGT+TGG + Chr2:11926117-11926136 MsG0280007204.01.T01:CDS 30.0%
CAATACTAGGTAACATTTCA+AGG - Chr2:11924695-11924714 None:intergenic 30.0%
CCATATTATTGATAAGGATG+AGG + Chr2:11924459-11924478 MsG0280007204.01.T01:intron 30.0%
CCTCATCCTTATCAATAATA+TGG - Chr2:11924462-11924481 None:intergenic 30.0%
GAAGGAAAATTGAAGTCATT+AGG - Chr2:11927153-11927172 None:intergenic 30.0%
GAGATAAAAACAATGACCAA+TGG - Chr2:11924022-11924041 None:intergenic 30.0%
GAGTGTTTGAAAATAAAGAG+TGG + Chr2:11925218-11925237 MsG0280007204.01.T01:intron 30.0%
GATGTAAAATGGCCAATAAA+TGG - Chr2:11924542-11924561 None:intergenic 30.0%
GATTGCAAGTTTCTTGATTT+AGG + Chr2:11923825-11923844 MsG0280007204.01.T01:CDS 30.0%
GCATAGTATATGACATTGAA+TGG + Chr2:11924375-11924394 MsG0280007204.01.T01:intron 30.0%
GCTAATATACAAATACGAAG+TGG - Chr2:11924719-11924738 None:intergenic 30.0%
GTATGAAATGTTTGGCTATT+CGG + Chr2:11927206-11927225 MsG0280007204.01.T01:intron 30.0%
GTGACAAAATCATGATGATA+GGG + Chr2:11924902-11924921 MsG0280007204.01.T01:intron 30.0%
GTGTTCTAATATTGCAGAAT+TGG - Chr2:11927921-11927940 None:intergenic 30.0%
GTTGAGTTTCTTGATGAAAA+GGG + Chr2:11923735-11923754 MsG0280007204.01.T01:CDS 30.0%
GTTTAGAGGAACAAAAACTA+AGG - Chr2:11926574-11926593 None:intergenic 30.0%
TAAAACTGGATCAAATGGAT+TGG + Chr2:11926404-11926423 MsG0280007204.01.T01:CDS 30.0%
TAGGACAAAACTAAAACCAT+TGG + Chr2:11924003-11924022 MsG0280007204.01.T01:intron 30.0%
TCGTTTACAAGTCCAATATA+AGG - Chr2:11924597-11924616 None:intergenic 30.0%
TGATTCGAAAGTTAAACATG+GGG - Chr2:11925548-11925567 None:intergenic 30.0%
TGTGACAAAATCATGATGAT+AGG + Chr2:11924901-11924920 MsG0280007204.01.T01:intron 30.0%
TGTTCGAATTCTGACTATAT+AGG + Chr2:11924201-11924220 MsG0280007204.01.T01:intron 30.0%
! AATGGATTTACACTTTGTCT+TGG + Chr2:11924393-11924412 MsG0280007204.01.T01:intron 30.0%
! ATCAAACTTTAGCTCATGTT+TGG - Chr2:11927433-11927452 None:intergenic 30.0%
! ATCCATTTGATCCAGTTTTA+TGG - Chr2:11926404-11926423 None:intergenic 30.0%
! ATGATTTTGTCACATGATGA+TGG - Chr2:11924895-11924914 None:intergenic 30.0%
! ATTGAGAGTTACCTTTGAAA+TGG + Chr2:11924419-11924438 MsG0280007204.01.T01:intron 30.0%
! CAATCTTTTGATGCATACAA+TGG - Chr2:11923810-11923829 None:intergenic 30.0%
! CATTTTGTGTAGAACAAATC+AGG - Chr2:11923876-11923895 None:intergenic 30.0%
! CTTGATTCGAAAGTTAAACA+TGG - Chr2:11925550-11925569 None:intergenic 30.0%
! GAGAAAATATGGTATTGAAC+GGG + Chr2:11925071-11925090 MsG0280007204.01.T01:intron 30.0%
! TCATAGATTGATTCCTTGTT+AGG - Chr2:11926235-11926254 None:intergenic 30.0%
! TGATTTTGTCACATGATGAT+GGG - Chr2:11924894-11924913 None:intergenic 30.0%
!! AAGGAAGTGCTAAAAAGATT+AGG + Chr2:11926374-11926393 MsG0280007204.01.T01:CDS 30.0%
!! AGAGAAGTTGATGGTAAATT+TGG + Chr2:11923654-11923673 MsG0280007204.01.T01:CDS 30.0%
!! ATCTTTTTAGCACTTCCTTT+AGG - Chr2:11926373-11926392 None:intergenic 30.0%
!! CTGATTTGTTCTACACAAAA+TGG + Chr2:11923874-11923893 MsG0280007204.01.T01:CDS 30.0%
!! GCATTGAATCTGTTTTTCAT+TGG - Chr2:11926106-11926125 None:intergenic 30.0%
!! GTATATTGGTGTCAAAATTG+AGG + Chr2:11924053-11924072 MsG0280007204.01.T01:intron 30.0%
!! TGAAGGTATTGAATGTAACA+AGG + Chr2:11927966-11927985 MsG0280007204.01.T01:CDS 30.0%
!! TGACTTGTTTGAAGGTAATT+GGG + Chr2:11923767-11923786 MsG0280007204.01.T01:CDS 30.0%
!! TTATTTCTGGTCAATTCAAG+AGG + Chr2:11923679-11923698 MsG0280007204.01.T01:CDS 30.0%
!! TTGAGAGTTACCTTTGAAAT+GGG + Chr2:11924420-11924439 MsG0280007204.01.T01:intron 30.0%
!! TTGGATTTTAGAGAAGTTGA+TGG + Chr2:11923645-11923664 MsG0280007204.01.T01:CDS 30.0%
!! TTGTTATTTCCAAGAAGGTA+AGG + Chr2:11926978-11926997 MsG0280007204.01.T01:CDS 30.0%
!! TTTTTCAACCAAAAAGGTCA+CGG - Chr2:11924747-11924766 None:intergenic 30.0%
!!! ATTTTTTCATGATTGTCCAG+GGG + Chr2:11926955-11926974 MsG0280007204.01.T01:intron 30.0%
!!! GATGTTTTGGTTCTTAATAC+AGG + Chr2:11926451-11926470 MsG0280007204.01.T01:CDS 30.0%
!!! TTCTCAAGTTTTGAAGTTGA+AGG + Chr2:11927949-11927968 MsG0280007204.01.T01:CDS 30.0%
AAATTCTTCAAACCAACACG+TGG + Chr2:11923500-11923519 MsG0280007204.01.T01:CDS 35.0%
AACAAACGCATAGTATTTGC+TGG + Chr2:11926151-11926170 MsG0280007204.01.T01:CDS 35.0%
AACCCTTTGTGCTTTGTAAT+TGG - Chr2:11926271-11926290 None:intergenic 35.0%
AACTGTGACCAGTTATCTTT+AGG - Chr2:11927890-11927909 None:intergenic 35.0%
AAGAAAACTTGAGTCTTGCT+AGG - Chr2:11927087-11927106 None:intergenic 35.0%
AATACGAAGTGGTCAATACT+AGG - Chr2:11924708-11924727 None:intergenic 35.0%
AATCCAACAACAACCAAAGA+CGG - Chr2:11923585-11923604 None:intergenic 35.0%
ACAAACGCATAGTATTTGCT+GGG + Chr2:11926152-11926171 MsG0280007204.01.T01:CDS 35.0%
ACCCTTTGTGCTTTGTAATT+GGG - Chr2:11926270-11926289 None:intergenic 35.0%
ACTCAATAGGAAGAAACCAA+TGG + Chr2:11926176-11926195 MsG0280007204.01.T01:CDS 35.0%
ACTTAACTTCCTTACCTTCT+TGG - Chr2:11926990-11927009 None:intergenic 35.0%
AGAAGGTAAGGAAGTTAAGT+TGG + Chr2:11926990-11927009 MsG0280007204.01.T01:CDS 35.0%
AGGATTGGATTACCATTTGA+TGG - Chr2:11926500-11926519 None:intergenic 35.0%
AGGTAGAAGATGCATATAAG+AGG + Chr2:11927019-11927038 MsG0280007204.01.T01:CDS 35.0%
ATGTGACATGTATCATACAG+AGG + Chr2:11927797-11927816 MsG0280007204.01.T01:intron 35.0%
ATTACAAACCTGAAATGCAC+AGG - Chr2:11927123-11927142 None:intergenic 35.0%
CAATTACCATGTCTATGTGA+GGG + Chr2:11925261-11925280 MsG0280007204.01.T01:intron 35.0%
CATGACAAATTTAGATGACG+TGG + Chr2:11926635-11926654 MsG0280007204.01.T01:intron 35.0%
CATTGGTACCTAAAGATAAC+TGG + Chr2:11927879-11927898 MsG0280007204.01.T01:CDS 35.0%
CATTTCTTGTGTTACAAAGC+AGG + Chr2:11926344-11926363 MsG0280007204.01.T01:CDS 35.0%
CGCTAGAGATTCGTATAAAT+TGG - Chr2:11925738-11925757 None:intergenic 35.0%
CTAGGCAAGTTACAATCTTT+AGG - Chr2:11923909-11923928 None:intergenic 35.0%
CTCAATAGGAAGAAACCAAT+GGG + Chr2:11926177-11926196 MsG0280007204.01.T01:CDS 35.0%
CTGCTTTGTAACACAAGAAA+TGG - Chr2:11926346-11926365 None:intergenic 35.0%
CTGTTGACACAACATTGAAT+TGG + Chr2:11927043-11927062 MsG0280007204.01.T01:CDS 35.0%
GAAAGATGGAAACTGTCATT+TGG + Chr2:11927832-11927851 MsG0280007204.01.T01:CDS 35.0%
GATTAGGACAACCATAAAAC+TGG + Chr2:11926390-11926409 MsG0280007204.01.T01:CDS 35.0%
GCTAATGAAGATCCATCTAA+TGG + Chr2:11926608-11926627 MsG0280007204.01.T01:intron 35.0%
GTCAATTCAAGAGGTTTACT+TGG + Chr2:11923688-11923707 MsG0280007204.01.T01:CDS 35.0%
GTTATCTTTAGGTACCAATG+AGG - Chr2:11927879-11927898 None:intergenic 35.0%
GTTTGAAGGTAATTGGGTTT+GGG + Chr2:11923773-11923792 MsG0280007204.01.T01:CDS 35.0%
TAGCCAAACATTTCATACCT+AGG - Chr2:11927204-11927223 None:intergenic 35.0%
TCAATTACCATGTCTATGTG+AGG + Chr2:11925260-11925279 MsG0280007204.01.T01:intron 35.0%
TCTCCTAGGTATGAAATGTT+TGG + Chr2:11927198-11927217 MsG0280007204.01.T01:intron 35.0%
TGGTTCTTAATACAGGACAT+TGG + Chr2:11926458-11926477 MsG0280007204.01.T01:CDS 35.0%
TGTTAATAGCAACTGCAGTT+GGG + Chr2:11924143-11924162 MsG0280007204.01.T01:intron 35.0%
TGTTCTACACAAAATGGAGA+TGG + Chr2:11923880-11923899 MsG0280007204.01.T01:CDS 35.0%
TGTTTGAAGGTAATTGGGTT+TGG + Chr2:11923772-11923791 MsG0280007204.01.T01:CDS 35.0%
TTATACGACTGTCTGTATGA+TGG - Chr2:11925985-11926004 None:intergenic 35.0%
TTCTTAATACAGGACATTGG+TGG + Chr2:11926461-11926480 MsG0280007204.01.T01:CDS 35.0%
TTCTTGATGAAAAGGGTGAT+GGG + Chr2:11923742-11923761 MsG0280007204.01.T01:CDS 35.0%
TTGAATGTAACAAGGATGTC+AGG + Chr2:11927974-11927993 MsG0280007204.01.T01:CDS 35.0%
TTGTCATGTCATCCATTAGA+TGG - Chr2:11926623-11926642 None:intergenic 35.0%
TTGTTAATAGCAACTGCAGT+TGG + Chr2:11924142-11924161 MsG0280007204.01.T01:intron 35.0%
TTGTTGAACAATTGTCCATG+AGG - Chr2:11927732-11927751 None:intergenic 35.0%
TTTAATATTGAGCCACCTCA+TGG + Chr2:11927714-11927733 MsG0280007204.01.T01:intron 35.0%
TTTCTTGATGAAAAGGGTGA+TGG + Chr2:11923741-11923760 MsG0280007204.01.T01:CDS 35.0%
! AGTCATCAGTTTGGAATTGT+TGG + Chr2:11927264-11927283 MsG0280007204.01.T01:intron 35.0%
! CTAAAGATTGTAACTTGCCT+AGG + Chr2:11923907-11923926 MsG0280007204.01.T01:CDS 35.0%
! TTGTATAAAGAGTGGTGTTG+TGG - Chr2:11925652-11925671 None:intergenic 35.0%
! TTTTATCCCTCACATAGACA+TGG - Chr2:11925270-11925289 None:intergenic 35.0%
!! ATCAAATGGATTGGAACTCT+TGG + Chr2:11926413-11926432 MsG0280007204.01.T01:CDS 35.0%
!! GGAAGTTAAGTTGGAAATGA+AGG + Chr2:11926999-11927018 MsG0280007204.01.T01:CDS 35.0%
!! GGATTTAGGTGTTCTGAAAA+TGG + Chr2:11923846-11923865 MsG0280007204.01.T01:CDS 35.0%
!! GTGACTTGTTTGAAGGTAAT+TGG + Chr2:11923766-11923785 MsG0280007204.01.T01:CDS 35.0%
!! GTTCTTGGTGTTCAAATTCA+AGG + Chr2:11926288-11926307 MsG0280007204.01.T01:CDS 35.0%
!! TACATGCTGTTTCTTCTACT+TGG + Chr2:11923626-11923645 MsG0280007204.01.T01:CDS 35.0%
!! TTTTTAGCACTTCCTTTAGG+AGG - Chr2:11926370-11926389 None:intergenic 35.0%
AAGGTTGTTTGAACCGTCTT+TGG + Chr2:11923569-11923588 MsG0280007204.01.T01:CDS 40.0%
AGCCCAATTACAAAGCACAA+AGG + Chr2:11926265-11926284 MsG0280007204.01.T01:CDS 40.0%
AGTAGCTCATTCCATGTATC+AGG - Chr2:11928094-11928113 None:intergenic 40.0%
ATGTCAGGTCAGAGAAAAGA+TGG + Chr2:11927989-11928008 MsG0280007204.01.T01:CDS 40.0%
CAAGAGGTTTACTTGGTCAA+CGG + Chr2:11923695-11923714 MsG0280007204.01.T01:CDS 40.0%
CAAGTTAGCATTGTGTACCT+AGG - Chr2:11923927-11923946 None:intergenic 40.0%
CATTTACGCAGTCATCAGTT+TGG + Chr2:11927255-11927274 MsG0280007204.01.T01:intron 40.0%
GACAAATTTAGATGACGTGG+CGG + Chr2:11926638-11926657 MsG0280007204.01.T01:intron 40.0%
GCCCAATTACAAAGCACAAA+GGG + Chr2:11926266-11926285 MsG0280007204.01.T01:CDS 40.0%
GTGCAAAACTCATCTGTACT+AGG - Chr2:11927510-11927529 None:intergenic 40.0%
GTTTGGCTATTCGGATGTTT+GGG + Chr2:11927215-11927234 MsG0280007204.01.T01:intron 40.0%
TACAAAGCACAAAGGGTTCT+TGG + Chr2:11926273-11926292 MsG0280007204.01.T01:CDS 40.0%
TATCATACAGAGGTGGAGAT+TGG + Chr2:11927807-11927826 MsG0280007204.01.T01:intron 40.0%
TGACATGTATCATACAGAGG+TGG + Chr2:11927800-11927819 MsG0280007204.01.T01:intron 40.0%
TGCATAGTAGTGATTCCCAT+TGG - Chr2:11926195-11926214 None:intergenic 40.0%
TGGAGCTCTATAGTACTCTA+TGG - Chr2:11926326-11926345 None:intergenic 40.0%
TGTCAGGTCAGAGAAAAGAT+GGG + Chr2:11927990-11928009 MsG0280007204.01.T01:CDS 40.0%
TGTTTGGCTATTCGGATGTT+TGG + Chr2:11927214-11927233 MsG0280007204.01.T01:intron 40.0%
TTCTTGGAAATAACAACCCC+TGG - Chr2:11926974-11926993 None:intergenic 40.0%
TTGAACAATTGTCCATGAGG+TGG - Chr2:11927729-11927748 None:intergenic 40.0%
! ATGGAGAGATGCTGATGTTT+TGG + Chr2:11926438-11926457 MsG0280007204.01.T01:CDS 40.0%
! CAAACGCATAGTATTTGCTG+GGG + Chr2:11926153-11926172 MsG0280007204.01.T01:CDS 40.0%
! CATTGATTGCTACATTGCTG+AGG - Chr2:11924183-11924202 None:intergenic 40.0%
! GTAATTGGGTTTGGGATGAA+AGG + Chr2:11923781-11923800 MsG0280007204.01.T01:CDS 40.0%
! TAAGGAAGGTGAAGCGTTTA+AGG + Chr2:11923550-11923569 MsG0280007204.01.T01:CDS 40.0%
! TGGATTGGAACTCTTGGAAA+TGG + Chr2:11926419-11926438 MsG0280007204.01.T01:CDS 40.0%
!! AAAGAGTGGTGTTGTGGATT+AGG - Chr2:11925646-11925665 None:intergenic 40.0%
!! AGAGTTACCTTTGAAATGGG+TGG + Chr2:11924423-11924442 MsG0280007204.01.T01:intron 40.0%
!! AGGGGTTGTTATTTCCAAGA+AGG + Chr2:11926973-11926992 MsG0280007204.01.T01:intron 40.0%
!! CTCTTCTGAAGTTCCTAACA+AGG + Chr2:11926219-11926238 MsG0280007204.01.T01:CDS 40.0%
AACCAAAAAGGTCACGGTTG+CGG - Chr2:11924741-11924760 None:intergenic 45.0%
CTGATGACTGCGTAAATGCT+TGG - Chr2:11927253-11927272 None:intergenic 45.0%
CTTATGCTCCTGTGCATTTC+AGG + Chr2:11927112-11927131 MsG0280007204.01.T01:CDS 45.0%
GAACCGTCTTTGGTTGTTGT+TGG + Chr2:11923579-11923598 MsG0280007204.01.T01:CDS 45.0%
GCAATTGCCACCCATTTCAA+AGG - Chr2:11924433-11924452 None:intergenic 45.0%
GGTGGAGATTGGAAGAAAGA+TGG + Chr2:11927818-11927837 MsG0280007204.01.T01:CDS 45.0%
GTTTGATACTTGACGACCCT+TGG + Chr2:11927446-11927465 MsG0280007204.01.T01:intron 45.0%
TGTTAGGTCACATTGCCACT+TGG + Chr2:11926725-11926744 MsG0280007204.01.T01:intron 45.0%
TTACAAAGCAGGCCTCCTAA+AGG + Chr2:11926355-11926374 MsG0280007204.01.T01:CDS 45.0%
TTCCATGTATCAGGTACACC+AGG - Chr2:11928085-11928104 None:intergenic 45.0%
TTCCTGGTGTACCTGATACA+TGG + Chr2:11928080-11928099 MsG0280007204.01.T01:CDS 45.0%
TTCTATGCATATACGCACGC+AGG - Chr2:11927374-11927393 None:intergenic 45.0%
TTGGAAACACTACCAGAGCT+TGG + Chr2:11927851-11927870 MsG0280007204.01.T01:CDS 45.0%
! GTATTTGCTGGGGACTCAAT+AGG + Chr2:11926163-11926182 MsG0280007204.01.T01:CDS 45.0%
!! AGTGGTGTTGTGGATTAGGA+AGG - Chr2:11925642-11925661 None:intergenic 45.0%
!! GATGGGTGTGACTTGTTTGA+AGG + Chr2:11923759-11923778 MsG0280007204.01.T01:CDS 45.0%
!! TTATAAAAAATTTATCAATT+AGG + Chr2:11924868-11924887 MsG0280007204.01.T01:intron 5.0%
!!! AATTATTTTTAAATCAAATA+GGG - Chr2:11925715-11925734 None:intergenic 5.0%
ACCAATGAGGATCCAAGCTC+TGG - Chr2:11927866-11927885 None:intergenic 50.0%
ACCAGAGCTTGGATCCTCAT+TGG + Chr2:11927862-11927881 MsG0280007204.01.T01:CDS 50.0%
ACGCAGGAGTTCGTAGTTGT+TGG - Chr2:11927358-11927377 None:intergenic 50.0%
ACGGCACTCATCAGACTGTT+AGG + Chr2:11926709-11926728 MsG0280007204.01.T01:intron 50.0%
CCAACACGTGGAACAAGACA+TGG + Chr2:11923512-11923531 MsG0280007204.01.T01:CDS 50.0%
GACACCAATGGCTGCAATCT+TGG - Chr2:11928060-11928079 None:intergenic 50.0%
GTACACCAGGAAGACACCAA+TGG - Chr2:11928072-11928091 None:intergenic 50.0%
TTGCTGAGGTCTAATGCGCT+AGG - Chr2:11924169-11924188 None:intergenic 50.0%
! CCATGTCTTGTTCCACGTGT+TGG - Chr2:11923515-11923534 None:intergenic 50.0%
! TGACGACCCTTGGTTCGTTA+TGG + Chr2:11927456-11927475 MsG0280007204.01.T01:intron 50.0%
GTCGCCAAGATTGCAGCCAT+TGG + Chr2:11928053-11928072 MsG0280007204.01.T01:CDS 55.0%
GTGGCGAGCATTAAGCCAAG+TGG - Chr2:11926743-11926762 None:intergenic 55.0%
! AGCCGCAACCGTGACCTTTT+TGG + Chr2:11924736-11924755 MsG0280007204.01.T01:intron 55.0%
! TGCAGCCATTGGTGTCTTCC+TGG + Chr2:11928064-11928083 MsG0280007204.01.T01:CDS 55.0%
TGGCTGCAATCTTGGCGACG+TGG - Chr2:11928052-11928071 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 11923480 11928177 11923480 ID=MsG0280007204.01;Name=MsG0280007204.01
Chr2 mRNA 11923480 11928177 11923480 ID=MsG0280007204.01.T01;Parent=MsG0280007204.01;Name=MsG0280007204.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|4|0|452
Chr2 exon 11923480 11923928 11923480 ID=MsG0280007204.01.T01:exon:2766;Parent=MsG0280007204.01.T01
Chr2 exon 11926117 11926506 11926117 ID=MsG0280007204.01.T01:exon:2767;Parent=MsG0280007204.01.T01
Chr2 exon 11926975 11927133 11926975 ID=MsG0280007204.01.T01:exon:2768;Parent=MsG0280007204.01.T01
Chr2 exon 11927817 11928177 11927817 ID=MsG0280007204.01.T01:exon:2769;Parent=MsG0280007204.01.T01
Chr2 CDS 11923480 11923928 11923480 ID=MsG0280007204.01.T01:cds;Parent=MsG0280007204.01.T01
Chr2 CDS 11926117 11926506 11926117 ID=MsG0280007204.01.T01:cds;Parent=MsG0280007204.01.T01
Chr2 CDS 11926975 11927133 11926975 ID=MsG0280007204.01.T01:cds;Parent=MsG0280007204.01.T01
Chr2 CDS 11927817 11928177 11927817 ID=MsG0280007204.01.T01:cds;Parent=MsG0280007204.01.T01
Gene Sequence

>MsG0280007204.01.T01

ATGTCTTCTACTAAGAATAAAAATTCTTCAAACCAACACGTGGAACAAGACATGGTATTGTTTGAAACATTAAGGAAGGTGAAGCGTTTAAGGTTGTTTGAACCGTCTTTGGTTGTTGTTGGATTTTTCCTAATACTTGTGTTTACTACATGCTGTTTCTTCTACTTGGATTTTAGAGAAGTTGATGGTAAATTTGGTATTATTTCTGGTCAATTCAAGAGGTTTACTTGGTCAACGGAAAAAGAACATAGTAGAGTTGAGTTTCTTGATGAAAAGGGTGATGGGTGTGACTTGTTTGAAGGTAATTGGGTTTGGGATGAAAGGTATCCATTGTATGCATCAAAAGATTGCAAGTTTCTTGATTTAGGATTTAGGTGTTCTGAAAATGGAAGACCTGATTTGTTCTACACAAAATGGAGATGGCAACCTAAAGATTGTAACTTGCCTAGATTCAATGCAACAATGATGTTGGAGAAACTAAGAAACAAACGCATAGTATTTGCTGGGGACTCAATAGGAAGAAACCAATGGGAATCACTACTATGCATGCTCTCTTCTGAAGTTCCTAACAAGGAATCAATCTATGAAGTTAATGGTAGCCCAATTACAAAGCACAAAGGGTTCTTGGTGTTCAAATTCAAGGATTTTAACTGTACCATAGAGTACTATAGAGCTCCATTTCTTGTGTTACAAAGCAGGCCTCCTAAAGGAAGTGCTAAAAAGATTAGGACAACCATAAAACTGGATCAAATGGATTGGAACTCTTGGAAATGGAGAGATGCTGATGTTTTGGTTCTTAATACAGGACATTGGTGGAATAATGAGAAAACCATCAAATGGGGTTGTTATTTCCAAGAAGGTAAGGAAGTTAAGTTGGAAATGAAGGTAGAAGATGCATATAAGAGGTCTGTTGACACAACATTGAATTGGATACAAGATACAATAAATCCTAGCAAGACTCAAGTTTTCTTTCGTACTTATGCTCCTGTGCATTTCAGAGGTGGAGATTGGAAGAAAGATGGAAACTGTCATTTGGAAACACTACCAGAGCTTGGATCCTCATTGGTACCTAAAGATAACTGGTCACAGTTCAAAATTGCCAATTCTGCAATATTAGAACACACAAACACTTCTCAAGTTTTGAAGTTGAAGGTATTGAATGTAACAAGGATGTCAGGTCAGAGAAAAGATGGGCATTCATCTAAATATTATTTGGGTCTTAATGCAAATCCACGTCGCCAAGATTGCAGCCATTGGTGTCTTCCTGGTGTACCTGATACATGGAATGAGCTACTTTATGCATTGTTTCTCAAATATGAAACTTCTCATAATTGGAATATGCAACATACTACACACTGA
Protein sequence

>MsG0280007204.01.T01

MSSTKNKNSSNQHVEQDMVLFETLRKVKRLRLFEPSLVVVGFFLILVFTTCCFFYLDFREVDGKFGIISGQFKRFTWSTEKEHSRVEFLDEKGDGCDLFEGNWVWDERYPLYASKDCKFLDLGFRCSENGRPDLFYTKWRWQPKDCNLPRFNATMMLEKLRNKRIVFAGDSIGRNQWESLLCMLSSEVPNKESIYEVNGSPITKHKGFLVFKFKDFNCTIEYYRAPFLVLQSRPPKGSAKKIRTTIKLDQMDWNSWKWRDADVLVLNTGHWWNNEKTIKWGCYFQEGKEVKLEMKVEDAYKRSVDTTLNWIQDTINPSKTQVFFRTYAPVHFRGGDWKKDGNCHLETLPELGSSLVPKDNWSQFKIANSAILEHTNTSQVLKLKVLNVTRMSGQRKDGHSSKYYLGLNANPRRQDCSHWCLPGVPDTWNELLYALFLKYETSHNWNMQHTTH*