Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030315.01.T01 | XP_013450732.1 | 96.571 | 350 | 11 | 1 | 3 | 352 | 16 | 364 | 0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030315.01.T01 | Q93ZC9 | 71.182 | 347 | 99 | 1 | 4 | 350 | 17 | 362 | 0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030315.01.T01 | I3SE96 | 96.571 | 350 | 11 | 1 | 3 | 352 | 16 | 364 | 0.0 | 696 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047999.01 | MsG0680030315.01 | 0.839935 | 1.176312e-57 | 1.649650e-54 |
| MsG0080048202.01 | MsG0680030315.01 | 0.801371 | 9.291014e-49 | 4.429672e-46 |
| MsG0080048889.01 | MsG0680030315.01 | 0.812811 | 3.513788e-51 | 2.255989e-48 |
| MsG0080048986.01 | MsG0680030315.01 | -0.835744 | 1.404332e-56 | 1.733129e-53 |
| MsG0080048988.01 | MsG0680030315.01 | 0.806208 | 9.199214e-50 | 4.964109e-47 |
| MsG0080049019.01 | MsG0680030315.01 | -0.803154 | 3.992159e-49 | 1.991589e-46 |
| MsG0080049059.01 | MsG0680030315.01 | 0.818960 | 1.492237e-52 | 1.133335e-49 |
| MsG0080049133.01 | MsG0680030315.01 | -0.828562 | 8.391286e-55 | 8.370840e-52 |
| MsG0180000322.01 | MsG0680030315.01 | -0.802751 | 4.834705e-49 | 2.387324e-46 |
| MsG0180000337.01 | MsG0680030315.01 | 0.884255 | 2.241673e-71 | 1.468798e-67 |
| MsG0180000452.01 | MsG0680030315.01 | 0.809567 | 1.775544e-50 | 1.046083e-47 |
| MsG0180001925.01 | MsG0680030315.01 | -0.817012 | 4.112026e-52 | 2.959994e-49 |
| MsG0180002099.01 | MsG0680030315.01 | -0.863501 | 2.379085e-64 | 7.228165e-61 |
| MsG0180002214.01 | MsG0680030315.01 | -0.823372 | 1.435000e-53 | 1.233171e-50 |
| MsG0180002426.01 | MsG0680030315.01 | -0.802180 | 6.339126e-49 | 3.084809e-46 |
| MsG0180002546.01 | MsG0680030315.01 | -0.837861 | 4.049005e-57 | 5.328771e-54 |
| MsG0180003687.01 | MsG0680030315.01 | 0.834545 | 2.818110e-56 | 3.355175e-53 |
| MsG0180003731.01 | MsG0680030315.01 | 0.841412 | 4.827496e-58 | 7.087939e-55 |
| MsG0180003758.01 | MsG0680030315.01 | -0.801171 | 1.021336e-48 | 4.844749e-46 |
| MsG0180004110.01 | MsG0680030315.01 | 0.820410 | 6.962548e-53 | 5.505077e-50 |
| MsG0180004502.01 | MsG0680030315.01 | -0.805561 | 1.258188e-49 | 6.677312e-47 |
| MsG0180004752.01 | MsG0680030315.01 | 0.857624 | 1.437787e-62 | 3.571196e-59 |
| MsG0180004761.01 | MsG0680030315.01 | -0.862605 | 4.503099e-64 | 1.326388e-60 |
| MsG0180004773.01 | MsG0680030315.01 | -0.816828 | 4.522085e-52 | 3.238598e-49 |
| MsG0180005272.01 | MsG0680030315.01 | 0.865469 | 5.772090e-65 | 1.879998e-61 |
| MsG0180005328.01 | MsG0680030315.01 | 0.844986 | 5.380428e-59 | 8.838250e-56 |
| MsG0180005474.01 | MsG0680030315.01 | -0.821551 | 3.803048e-53 | 3.103763e-50 |
| MsG0180005817.01 | MsG0680030315.01 | -0.815847 | 7.493510e-52 | 5.224402e-49 |
| MsG0180006227.01 | MsG0680030315.01 | -0.815309 | 9.875965e-52 | 6.784841e-49 |
| MsG0280006381.01 | MsG0680030315.01 | -0.801936 | 7.115237e-49 | 3.441066e-46 |
| MsG0280010583.01 | MsG0680030315.01 | -0.815607 | 8.478140e-52 | 5.872801e-49 |
| MsG0280010794.01 | MsG0680030315.01 | 0.833266 | 5.885709e-56 | 6.743212e-53 |
| MsG0280011165.01 | MsG0680030315.01 | 0.804677 | 1.925871e-49 | 9.991247e-47 |
| MsG0280011403.01 | MsG0680030315.01 | 0.820828 | 5.582016e-53 | 4.464868e-50 |
| MsG0380013272.01 | MsG0680030315.01 | 0.801966 | 7.016292e-49 | 3.395702e-46 |
| MsG0380014388.01 | MsG0680030315.01 | 0.801618 | 8.269341e-49 | 3.967024e-46 |
| MsG0380014642.01 | MsG0680030315.01 | -0.801198 | 1.008443e-48 | 4.786840e-46 |
| MsG0380014802.01 | MsG0680030315.01 | 0.817734 | 2.828400e-52 | 2.076614e-49 |
| MsG0480018463.01 | MsG0680030315.01 | -0.825475 | 4.593979e-54 | 4.191530e-51 |
| MsG0480019017.01 | MsG0680030315.01 | 0.804588 | 2.009860e-49 | 1.040305e-46 |
| MsG0480019038.01 | MsG0680030315.01 | 0.828054 | 1.112535e-54 | 1.093561e-51 |
| MsG0480019183.01 | MsG0680030315.01 | -0.815635 | 8.355813e-52 | 5.792516e-49 |
| MsG0480019228.01 | MsG0680030315.01 | 0.827337 | 1.654528e-54 | 1.592772e-51 |
| MsG0480019726.01 | MsG0680030315.01 | 0.818814 | 1.610797e-52 | 1.218276e-49 |
| MsG0480019836.01 | MsG0680030315.01 | -0.810770 | 9.772311e-51 | 5.943129e-48 |
| MsG0480019975.01 | MsG0680030315.01 | -0.816128 | 6.486163e-52 | 4.557212e-49 |
| MsG0480020411.01 | MsG0680030315.01 | 0.842585 | 2.363552e-58 | 3.600221e-55 |
| MsG0480020725.01 | MsG0680030315.01 | 0.800345 | 1.505409e-48 | 6.993280e-46 |
| MsG0480020838.01 | MsG0680030315.01 | -0.800040 | 1.736504e-48 | 8.004318e-46 |
| MsG0480020958.01 | MsG0680030315.01 | 0.801984 | 6.957993e-49 | 3.369005e-46 |
| MsG0480021169.01 | MsG0680030315.01 | -0.807695 | 4.457144e-50 | 2.499137e-47 |
| MsG0480022125.01 | MsG0680030315.01 | 0.846578 | 1.989379e-59 | 3.439612e-56 |
| MsG0480022671.01 | MsG0680030315.01 | 0.802591 | 5.216428e-49 | 2.565274e-46 |
| MsG0480023152.01 | MsG0680030315.01 | -0.822677 | 2.084319e-53 | 1.756531e-50 |
| MsG0480023242.01 | MsG0680030315.01 | -0.805329 | 1.406700e-49 | 7.421428e-47 |
| MsG0480023480.01 | MsG0680030315.01 | -0.803999 | 2.666720e-49 | 1.359595e-46 |
| MsG0480023695.01 | MsG0680030315.01 | -0.810932 | 9.012242e-51 | 5.505101e-48 |
| MsG0580024398.01 | MsG0680030315.01 | 0.819126 | 1.368177e-52 | 1.043747e-49 |
| MsG0580024442.01 | MsG0680030315.01 | -0.802974 | 4.348289e-49 | 2.159179e-46 |
| MsG0580024570.01 | MsG0680030315.01 | -0.804622 | 1.977291e-49 | 1.024319e-46 |
| MsG0580024871.01 | MsG0680030315.01 | 0.821528 | 3.848175e-53 | 3.138521e-50 |
| MsG0580025105.01 | MsG0680030315.01 | -0.804026 | 2.631265e-49 | 1.342463e-46 |
| MsG0580025151.01 | MsG0680030315.01 | 0.802905 | 4.494046e-49 | 2.227771e-46 |
| MsG0380015539.01 | MsG0680030315.01 | 0.804406 | 2.194043e-49 | 1.130273e-46 |
| MsG0380015654.01 | MsG0680030315.01 | -0.820257 | 7.547308e-53 | 5.941970e-50 |
| MsG0380016935.01 | MsG0680030315.01 | -0.814784 | 1.291671e-51 | 8.748068e-49 |
| MsG0380017231.01 | MsG0680030315.01 | 0.808946 | 2.412481e-50 | 1.397880e-47 |
| MsG0380017405.01 | MsG0680030315.01 | -0.815053 | 1.125575e-51 | 7.678716e-49 |
| MsG0380017804.01 | MsG0680030315.01 | -0.817512 | 3.173696e-52 | 2.316018e-49 |
| MsG0380017812.01 | MsG0680030315.01 | -0.821714 | 3.485915e-53 | 2.858144e-50 |
| MsG0380017928.01 | MsG0680030315.01 | -0.826927 | 2.073353e-54 | 1.972085e-51 |
| MsG0380018051.01 | MsG0680030315.01 | 0.816678 | 4.886664e-52 | 3.485327e-49 |
| MsG0380018060.01 | MsG0680030315.01 | 0.808739 | 2.671190e-50 | 1.539264e-47 |
| MsG0480018201.01 | MsG0680030315.01 | -0.800706 | 1.270569e-48 | 5.956276e-46 |
| MsG0480018202.01 | MsG0680030315.01 | -0.802487 | 5.480197e-49 | 2.687790e-46 |
| MsG0480018333.01 | MsG0680030315.01 | 0.843664 | 1.219356e-58 | 1.921526e-55 |
| MsG0580029583.01 | MsG0680030315.01 | 0.839649 | 1.396252e-57 | 1.940681e-54 |
| MsG0580029792.01 | MsG0680030315.01 | -0.821033 | 5.005136e-53 | 4.026799e-50 |
| MsG0680030315.01 | MsG0680030545.01 | 0.834111 | 3.620846e-56 | 4.254910e-53 |
| MsG0680030315.01 | MsG0680030961.01 | 0.818742 | 1.672586e-52 | 1.262521e-49 |
| MsG0680030315.01 | MsG0680031178.01 | 0.863440 | 2.486241e-64 | 7.536753e-61 |
| MsG0680030315.01 | MsG0680035741.01 | 0.816827 | 4.524064e-52 | 3.239932e-49 |
| MsG0680030315.01 | MsG0780037458.01 | -0.806010 | 1.012559e-49 | 5.436360e-47 |
| MsG0680030315.01 | MsG0780038047.01 | -0.806899 | 6.574871e-50 | 3.611105e-47 |
| MsG0680030315.01 | MsG0780039838.01 | -0.831696 | 1.442340e-55 | 1.577304e-52 |
| MsG0680030315.01 | MsG0780039839.01 | -0.830708 | 2.522002e-55 | 2.678349e-52 |
| MsG0680030315.01 | MsG0780039978.01 | 0.825429 | 4.709756e-54 | 4.291606e-51 |
| MsG0680030315.01 | MsG0780041079.01 | 0.818523 | 1.874938e-52 | 1.406799e-49 |
| MsG0680030315.01 | MsG0780041254.01 | -0.812831 | 3.478919e-51 | 2.234737e-48 |
| MsG0680030315.01 | MsG0780041316.01 | 0.808938 | 2.421825e-50 | 1.402967e-47 |
| MsG0680030315.01 | MsG0780041531.01 | -0.825939 | 3.566140e-54 | 3.297346e-51 |
| MsG0680030315.01 | MsG0780041637.01 | -0.819113 | 1.377044e-52 | 1.050184e-49 |
| MsG0680030315.01 | MsG0780041648.01 | 0.809674 | 1.683887e-50 | 9.949190e-48 |
| MsG0680030315.01 | MsG0780041783.01 | -0.816290 | 5.968739e-52 | 4.212502e-49 |
| MsG0680030315.01 | MsG0880042494.01 | 0.807712 | 4.420011e-50 | 2.479542e-47 |
| MsG0680030315.01 | MsG0880042495.01 | 0.847534 | 1.087953e-59 | 1.939992e-56 |
| MsG0680030315.01 | MsG0880043109.01 | 0.815686 | 8.141428e-52 | 5.651579e-49 |
| MsG0680030315.01 | MsG0880043261.01 | 0.802839 | 4.636645e-49 | 2.294718e-46 |
| MsG0680030315.01 | MsG0880043828.01 | 0.829928 | 3.912555e-55 | 4.061956e-52 |
| MsG0680030315.01 | MsG0880043916.01 | 0.837947 | 3.847457e-57 | 5.076907e-54 |
| MsG0680030315.01 | MsG0880043961.01 | 0.824590 | 7.433095e-54 | 6.613542e-51 |
| MsG0680030315.01 | MsG0880043983.01 | 0.812879 | 3.394958e-51 | 2.183757e-48 |
| MsG0680030315.01 | MsG0880043989.01 | 0.819713 | 1.005087e-52 | 7.794141e-50 |
| MsG0680030315.01 | MsG0880044339.01 | -0.804870 | 1.754932e-49 | 9.150997e-47 |
| MsG0680030315.01 | MsG0880045054.01 | 0.858584 | 7.449922e-63 | 1.910609e-59 |
| MsG0680030315.01 | MsG0880045683.01 | 0.874731 | 5.369683e-68 | 2.443396e-64 |
| MsG0680030315.01 | MsG0880045968.01 | -0.801497 | 8.755071e-49 | 4.187495e-46 |
| MsG0680030315.01 | MsG0880046010.01 | -0.805251 | 1.460692e-49 | 7.690506e-47 |
| MsG0680030315.01 | MsG0880046167.01 | -0.818736 | 1.677585e-52 | 1.266092e-49 |
| MsG0680030315.01 | MsG0880046176.01 | 0.847734 | 9.585741e-60 | 1.720086e-56 |
| MsG0680030315.01 | MsG0880046219.01 | -0.804583 | 2.014729e-49 | 1.042693e-46 |
| MsG0680030315.01 | MsG0880046341.01 | -0.812580 | 3.947250e-51 | 2.519119e-48 |
| MsG0680030315.01 | MsG0880046630.01 | -0.806837 | 6.775459e-50 | 3.715462e-47 |
| MsG0680030315.01 | MsG0880046947.01 | 0.807396 | 5.158764e-50 | 2.870313e-47 |
| MsG0680030315.01 | MsG0880047455.01 | -0.805232 | 1.474507e-49 | 7.759641e-47 |
| MsG0680030315.01 | MsG0880047486.01 | 0.803908 | 2.784329e-49 | 1.416284e-46 |
| MsG0680030315.01 | MsG0880047493.01 | 0.853720 | 1.983052e-61 | 4.325085e-58 |
| MsG0680030315.01 | MsG0880047531.01 | 0.893802 | 4.478072e-75 | 4.334920e-71 |
| MsG0280006475.01 | MsG0680030315.01 | -0.802504 | 5.436150e-49 | 2.667388e-46 |
| MsG0280006700.01 | MsG0680030315.01 | 0.878083 | 3.740161e-69 | 1.926480e-65 |
| MsG0280006883.01 | MsG0680030315.01 | 0.849356 | 3.409123e-60 | 6.446309e-57 |
| MsG0280007052.01 | MsG0680030315.01 | 0.861459 | 1.010743e-63 | 2.862234e-60 |
| MsG0280007204.01 | MsG0680030315.01 | 0.802537 | 5.353794e-49 | 2.629131e-46 |
| MsG0280007759.01 | MsG0680030315.01 | 0.802872 | 4.564092e-49 | 2.260628e-46 |
| MsG0280007916.01 | MsG0680030315.01 | 0.816917 | 4.319266e-52 | 3.100922e-49 |
| MsG0280008553.01 | MsG0680030315.01 | 0.839342 | 1.677893e-57 | 2.310430e-54 |
| MsG0280008820.01 | MsG0680030315.01 | -0.815277 | 1.003642e-51 | 6.889260e-49 |
| MsG0280009394.01 | MsG0680030315.01 | 0.828354 | 9.418816e-55 | 9.338940e-52 |
| MsG0280009742.01 | MsG0680030315.01 | -0.801276 | 9.719889e-49 | 4.622980e-46 |
| MsG0280009971.01 | MsG0680030315.01 | 0.842889 | 1.962241e-58 | 3.017268e-55 |
| MsG0280010047.01 | MsG0680030315.01 | 0.829772 | 4.268696e-55 | 4.412371e-52 |
| MsG0280010053.01 | MsG0680030315.01 | 0.841591 | 4.329344e-58 | 6.392175e-55 |
| MsG0280010055.01 | MsG0680030315.01 | 0.821363 | 4.202432e-53 | 3.411698e-50 |
| MsG0280010227.01 | MsG0680030315.01 | -0.843913 | 1.046025e-58 | 1.661289e-55 |
| MsG0280010240.01 | MsG0680030315.01 | 0.831509 | 1.603155e-55 | 1.743447e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030315.01.T01 | MTR_6g004430 | 96.571 | 350 | 11 | 1 | 3 | 352 | 16 | 364 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030315.01.T01 | AT3G01640 | 71.182 | 347 | 99 | 1 | 4 | 350 | 33 | 378 | 0.0 | 527 |
| MsG0680030315.01.T01 | AT3G01640 | 71.182 | 347 | 99 | 1 | 4 | 350 | 17 | 362 | 0.0 | 526 |
| MsG0680030315.01.T01 | AT5G14470 | 68.768 | 349 | 107 | 2 | 3 | 350 | 16 | 363 | 1.24e-179 | 502 |
Find 87 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCGGGTGGCGCAAGTTTA+TGG | 0.220839 | 6:-509699 | MsG0680030315.01.T01:CDS |
| GTGTTTCAGAGTGGACTTTC+GGG | 0.255531 | 6:-509858 | MsG0680030315.01.T01:intron |
| CTTAACAGTAGCAAAGAAAT+TGG | 0.282670 | 6:+510729 | None:intergenic |
| GTCATAGGAGAGAGTGAAAT+TGG | 0.286131 | 6:+510436 | None:intergenic |
| TGAGATGGATATGCTTCTTC+TGG | 0.292657 | 6:+507614 | None:intergenic |
| GCAGCGAATCCTAGTGATTC+TGG | 0.303472 | 6:-509477 | MsG0680030315.01.T01:CDS |
| TCCTTCTCGTTTAAATGAAA+TGG | 0.303995 | 6:-507675 | MsG0680030315.01.T01:CDS |
| ATAAATGCTGAAGGTTATTA+TGG | 0.304600 | 6:-510539 | MsG0680030315.01.T01:CDS |
| TATGCAAGAGTTGGATTGTT+AGG | 0.308744 | 6:-510799 | MsG0680030315.01.T01:CDS |
| ACTAGTACATTACATCTTCA+TGG | 0.314856 | 6:+507643 | None:intergenic |
| ACCTTCGCAGGTCAAAATTT+CGG | 0.328226 | 6:+508904 | None:intergenic |
| GAAAATTCTATTCAATTTGC+AGG | 0.336003 | 6:+507455 | None:intergenic |
| GTTCATGAGAGCTGCTAGTT+TGG | 0.342821 | 6:+508926 | None:intergenic |
| CCTCTCAACAACAACAAAAC+TGG | 0.362075 | 6:+507505 | None:intergenic |
| TTCTTGATTTCTACAAAGTT+AGG | 0.363177 | 6:-509800 | MsG0680030315.01.T01:CDS |
| GAAAACACATGGGTTGAATA+TGG | 0.364220 | 6:-507529 | MsG0680030315.01.T01:three_prime_UTR |
| AAAGAACTTGGAATAGTTGC+AGG | 0.371527 | 6:-509729 | MsG0680030315.01.T01:CDS |
| TGTGTTTCAGAGTGGACTTT+CGG | 0.376289 | 6:-509859 | MsG0680030315.01.T01:intron |
| CTTTCTCTGCGGCGAGGATA+AGG | 0.384045 | 6:+509748 | None:intergenic |
| CTTCTCTTCTCATCATCAAT+TGG | 0.396430 | 6:-510650 | MsG0680030315.01.T01:intron |
| ACGAGGGATGTTAGTGTCAT+AGG | 0.404261 | 6:+510421 | None:intergenic |
| AATCCAAGCGATGTTTATTA+CGG | 0.415951 | 6:-510775 | MsG0680030315.01.T01:CDS |
| ATATTGTACAGGTTAATGTT+TGG | 0.421324 | 6:-507884 | MsG0680030315.01.T01:intron |
| CTCGCCGCAGAGAAAGAACT+TGG | 0.453503 | 6:-509741 | MsG0680030315.01.T01:CDS |
| GTTATGTTATGCAGGTTGAT+AGG | 0.454420 | 6:-510562 | MsG0680030315.01.T01:intron |
| TCCATTTCATTTAAACGAGA+AGG | 0.461848 | 6:+507674 | None:intergenic |
| TTGCCGTAATAAACATCGCT+TGG | 0.462708 | 6:+510772 | None:intergenic |
| GAAATCAAGAAAGCAGTTCA+AGG | 0.463436 | 6:+509812 | None:intergenic |
| GTGCGGCAGAGGTGGCTTGA+TGG | 0.485438 | 6:-509032 | MsG0680030315.01.T01:CDS |
| AATGGTAGAGGTTGCTAGGA+AGG | 0.485870 | 6:-507831 | MsG0680030315.01.T01:CDS |
| GGAGCCGCGTCAAAATTTAC+AGG | 0.491950 | 6:-507806 | MsG0680030315.01.T01:CDS |
| CACAAAGCATATGCAAGAGT+TGG | 0.502332 | 6:-510808 | MsG0680030315.01.T01:CDS |
| TCATTTAAACGAGAAGGAAA+AGG | 0.504226 | 6:+507680 | None:intergenic |
| AGTGGACTTTCGGGTTCTAG+TGG | 0.508326 | 6:-509849 | MsG0680030315.01.T01:CDS |
| CAAAGTTAGGCATCTAATCA+AGG | 0.511075 | 6:-509787 | MsG0680030315.01.T01:CDS |
| AGTTGCAGGTCTTCAAGATC+GGG | 0.515184 | 6:-509715 | MsG0680030315.01.T01:CDS |
| CCATCTCATTAATTATGAGT+TGG | 0.517561 | 6:-507599 | MsG0680030315.01.T01:three_prime_UTR |
| TGACACTAACATCCCTCGTC+AGG | 0.517889 | 6:-510417 | MsG0680030315.01.T01:intron |
| GAGAAAGAGAAAGAGAAAAG+AGG | 0.525226 | 6:-510890 | MsG0680030315.01.T01:five_prime_UTR |
| TACATAGCAAAGTGCGGCAG+AGG | 0.525895 | 6:-509043 | MsG0680030315.01.T01:CDS |
| GTAGAGGTTGCTAGGAAGGT+TGG | 0.526618 | 6:-507827 | MsG0680030315.01.T01:CDS |
| CTAACCTTTCCAGAATCACT+AGG | 0.530686 | 6:+509468 | None:intergenic |
| TAGTTGCAGGTCTTCAAGAT+CGG | 0.535657 | 6:-509716 | MsG0680030315.01.T01:CDS |
| AAGGAAAACATGGATAAACT+AGG | 0.536324 | 6:-509558 | MsG0680030315.01.T01:CDS |
| CCAACTCATAATTAATGAGA+TGG | 0.536366 | 6:+507599 | None:intergenic |
| TAGGATTCGCTGCATAGATA+AGG | 0.537333 | 6:+509487 | None:intergenic |
| GCGTCAAAATTTACAGGTAG+CGG | 0.540673 | 6:-507800 | MsG0680030315.01.T01:CDS |
| GCATGGAATTTATATACCAA+TGG | 0.548230 | 6:-509535 | MsG0680030315.01.T01:CDS |
| AGGTTGAATGATGAGTTCAT+TGG | 0.552268 | 6:+510696 | None:intergenic |
| GCTGCATAGATAAGGTATAG+AGG | 0.555467 | 6:+509495 | None:intergenic |
| GAGGATGAATGTCATAAAGC+AGG | 0.556500 | 6:-507725 | MsG0680030315.01.T01:CDS |
| TGGAGGAGTTCGATTGCTCA+TGG | 0.558982 | 6:-510519 | MsG0680030315.01.T01:CDS |
| AACATGGATAAACTAGGGCA+TGG | 0.559912 | 6:-509552 | MsG0680030315.01.T01:CDS |
| CGAGAAGGAAAAGGTTCAAG+AGG | 0.561564 | 6:+507689 | None:intergenic |
| TTATGGTGGACTAGTTTACA+TGG | 0.565357 | 6:-509682 | MsG0680030315.01.T01:intron |
| AAAACAGCAATTACCTTCGC+AGG | 0.567464 | 6:+508892 | None:intergenic |
| GTGGCATGTATTGCGAAAGA+AGG | 0.569812 | 6:-508978 | MsG0680030315.01.T01:CDS |
| GTGGACTTTCGGGTTCTAGT+GGG | 0.575814 | 6:-509848 | MsG0680030315.01.T01:CDS |
| ATAGCAAAGTGCGGCAGAGG+TGG | 0.579701 | 6:-509040 | MsG0680030315.01.T01:CDS |
| AGGAAAACATGGATAAACTA+GGG | 0.585507 | 6:-509557 | MsG0680030315.01.T01:CDS |
| ATCTCAAGCAAAGCTTCTTG+AGG | 0.587762 | 6:-507744 | MsG0680030315.01.T01:CDS |
| GGGAGTAGACTCAAATCCAT+TGG | 0.588527 | 6:+509519 | None:intergenic |
| ACGAGATCATGAGTAGGATG+AGG | 0.598220 | 6:+510676 | None:intergenic |
| ATCTAATCAAGGTGGAGGTG+AGG | 0.598295 | 6:-509776 | MsG0680030315.01.T01:CDS |
| CATAGATAAGGTATAGAGGT+GGG | 0.601717 | 6:+509499 | None:intergenic |
| TAGGCATCTAATCAAGGTGG+AGG | 0.605299 | 6:-509781 | MsG0680030315.01.T01:CDS |
| GGACTTCAACAAGGAAAACA+TGG | 0.605432 | 6:-509568 | MsG0680030315.01.T01:CDS |
| TCTGCGGCGAGGATAAGGTT+AGG | 0.606768 | 6:+509753 | None:intergenic |
| AATGCTGAAGGTTATTATGG+AGG | 0.608746 | 6:-510536 | MsG0680030315.01.T01:CDS |
| AAGTTGACGAGATCATGAGT+AGG | 0.613710 | 6:+510670 | None:intergenic |
| TGTGAAATCAATGCTTGAAG+TGG | 0.615009 | 6:-508997 | MsG0680030315.01.T01:CDS |
| CAAGTTCTTTCTCTGCGGCG+AGG | 0.616905 | 6:+509742 | None:intergenic |
| GAATCCTAGTGATTCTGGAA+AGG | 0.625297 | 6:-509472 | MsG0680030315.01.T01:intron |
| TCAAAATTTACAGGTAGCGG+AGG | 0.625357 | 6:-507797 | MsG0680030315.01.T01:CDS |
| TGCAGGTCTTCAAGATCGGG+TGG | 0.627175 | 6:-509712 | MsG0680030315.01.T01:CDS |
| GTTGTTGCATATTGTACTGA+GGG | 0.631945 | 6:-507770 | MsG0680030315.01.T01:CDS |
| ATGTATTGCGAAAGAAGGAA+AGG | 0.634293 | 6:-508973 | MsG0680030315.01.T01:CDS |
| CGGGTGGCGCAAGTTTATGG+TGG | 0.637422 | 6:-509696 | MsG0680030315.01.T01:CDS |
| GTTGATAGGATAAATGCTGA+AGG | 0.640418 | 6:-510548 | MsG0680030315.01.T01:CDS |
| GCATAGATAAGGTATAGAGG+TGG | 0.644266 | 6:+509498 | None:intergenic |
| TGAATGATGAGTTCATTGGA+AGG | 0.645465 | 6:+510700 | None:intergenic |
| TATTCCAAGTTCTTTCTCTG+CGG | 0.647677 | 6:+509737 | None:intergenic |
| ATGTTTGGAGATGATGCACT+TGG | 0.648508 | 6:-507869 | MsG0680030315.01.T01:CDS |
| TGTTGTTGCATATTGTACTG+AGG | 0.675718 | 6:-507771 | MsG0680030315.01.T01:CDS |
| TGCAGGTACATAGCAAAGTG+CGG | 0.681982 | 6:-509049 | MsG0680030315.01.T01:intron |
| AGTTAGGCATCTAATCAAGG+TGG | 0.684662 | 6:-509784 | MsG0680030315.01.T01:CDS |
| TTGTTGCATATTGTACTGAG+GGG | 0.750693 | 6:-507769 | MsG0680030315.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTGAAAATTTTGAAA+GGG | - | Chr6:510002-510021 | MsG0680030315.01.T01:intron | 10.0% |
| !! | AATTTAAAAATGAAAACACA+TGG | - | Chr6:510841-510860 | MsG0680030315.01.T01:exon | 15.0% |
| !! | ATTTAAAAATGAAAACACAT+GGG | - | Chr6:510842-510861 | MsG0680030315.01.T01:exon | 15.0% |
| !! | TATCAGTTAAAAAAATCAAA+TGG | + | Chr6:509546-509565 | None:intergenic | 15.0% |
| !!! | ATTTTCAATGTTTCAAAATT+TGG | - | Chr6:510943-510962 | MsG0680030315.01.T01:five_prime_UTR | 15.0% |
| !!! | GATAATTTGAAAATTTTGAA+AGG | - | Chr6:510001-510020 | MsG0680030315.01.T01:intron | 15.0% |
| !!! | TTATTTTAGAGAAAAGAATT+GGG | + | Chr6:509095-509114 | None:intergenic | 15.0% |
| !!! | TTCAAAATTTTCAAATTATC+CGG | + | Chr6:510001-510020 | None:intergenic | 15.0% |
| !!! | TTTTCAATGTTTCAAAATTT+GGG | - | Chr6:510944-510963 | MsG0680030315.01.T01:five_prime_UTR | 15.0% |
| !!! | ATGAGATTCATGTTTTTTTA+TGG | - | Chr6:510815-510834 | MsG0680030315.01.T01:CDS | 20.0% |
| !!! | ATTCTTTTCTCTAAAATAAG+AGG | - | Chr6:509096-509115 | MsG0680030315.01.T01:intron | 20.0% |
| !!! | ATTTTTCTTTAAACGTTCTT+TGG | - | Chr6:510291-510310 | MsG0680030315.01.T01:intron | 20.0% |
| !!! | CACTTATTTTTTTTTGAAGA+AGG | - | Chr6:510353-510372 | MsG0680030315.01.T01:intron | 20.0% |
| !!! | CTTATTTTAGAGAAAAGAAT+TGG | + | Chr6:509096-509115 | None:intergenic | 20.0% |
| !!! | CTTGTATTAAACTTTGTTAT+TGG | - | Chr6:510467-510486 | MsG0680030315.01.T01:CDS | 20.0% |
| !!! | TTTTTCTTTAAACGTTCTTT+GGG | - | Chr6:510292-510311 | MsG0680030315.01.T01:intron | 20.0% |
| ! | AAAAAATCCTGACTCTAATT+TGG | + | Chr6:508237-508256 | None:intergenic | 25.0% |
| ! | AAAAATCCTGACTCTAATTT+GGG | + | Chr6:508236-508255 | None:intergenic | 25.0% |
| ! | AAATAATGAATGAGTGAATC+CGG | + | Chr6:508421-508440 | None:intergenic | 25.0% |
| ! | AAGACAAAAAAAGAGAAAGA+AGG | + | Chr6:507760-507779 | None:intergenic | 25.0% |
| ! | AAGTAGGTTATGAGTATATT+AGG | + | Chr6:510246-510265 | None:intergenic | 25.0% |
| ! | ACATCAACTTACTTATTGAT+AGG | - | Chr6:509596-509615 | MsG0680030315.01.T01:intron | 25.0% |
| ! | ATAAATGCTGAAGGTTATTA+TGG | - | Chr6:507842-507861 | MsG0680030315.01.T01:CDS | 25.0% |
| ! | ATATATATATATACCTGACG+AGG | + | Chr6:507980-507999 | None:intergenic | 25.0% |
| ! | ATATTGTACAGGTTAATGTT+TGG | - | Chr6:510497-510516 | MsG0680030315.01.T01:CDS | 25.0% |
| ! | ATCATAAAAATCGCAAATCA+TGG | - | Chr6:510394-510413 | MsG0680030315.01.T01:intron | 25.0% |
| ! | GAAAATTCTATTCAATTTGC+AGG | + | Chr6:510929-510948 | None:intergenic | 25.0% |
| ! | GTACTAATTTATTGATCAGT+AGG | - | Chr6:509729-509748 | MsG0680030315.01.T01:CDS | 25.0% |
| ! | TATATATATATACCTGACGA+GGG | + | Chr6:507979-507998 | None:intergenic | 25.0% |
| ! | TCAGTATCATTACATATAGT+TGG | - | Chr6:509513-509532 | MsG0680030315.01.T01:CDS | 25.0% |
| ! | TGATCAATAAATTAGTACAC+TGG | + | Chr6:509727-509746 | None:intergenic | 25.0% |
| ! | TGTAATAGCACTATTGTAAA+AGG | + | Chr6:508993-509012 | None:intergenic | 25.0% |
| ! | TTCCTATTCCTTTAATTAGT+TGG | + | Chr6:510432-510451 | None:intergenic | 25.0% |
| ! | TTCTTGATTTCTACAAAGTT+AGG | - | Chr6:508581-508600 | MsG0680030315.01.T01:intron | 25.0% |
| !! | AACACCATAAAGTGATATTT+TGG | - | Chr6:509227-509246 | MsG0680030315.01.T01:intron | 25.0% |
| !! | ACACCATAAAGTGATATTTT+GGG | - | Chr6:509228-509247 | MsG0680030315.01.T01:intron | 25.0% |
| !! | TGATGTTTAAGTTTCAAAGT+TGG | + | Chr6:509582-509601 | None:intergenic | 25.0% |
| !! | TTGGTCTTTATATATTGTAC+AGG | - | Chr6:510486-510505 | MsG0680030315.01.T01:CDS | 25.0% |
| !!! | ATTAGAGTCAGGATTTTTTT+TGG | - | Chr6:508238-508257 | MsG0680030315.01.T01:intron | 25.0% |
| !!! | TTAATTGTAATTGATGATGC+AGG | - | Chr6:509315-509334 | MsG0680030315.01.T01:intron | 25.0% |
| !!! | TTTTTAATGTCTCTAGAACA+TGG | + | Chr6:508199-508218 | None:intergenic | 25.0% |
| AAAAATGACTGTGTAACCTA+GGG | + | Chr6:510277-510296 | None:intergenic | 30.0% | |
| AAACAAAAGAAAGACCGTAA+GGG | + | Chr6:508364-508383 | None:intergenic | 30.0% | |
| AAGGAAAACATGGATAAACT+AGG | - | Chr6:508823-508842 | MsG0680030315.01.T01:intron | 30.0% | |
| AATCCAAGCGATGTTTATTA+CGG | - | Chr6:507606-507625 | MsG0680030315.01.T01:three_prime_UTR | 30.0% | |
| ACCTAGGGAAAAATTAAAGT+AGG | + | Chr6:510262-510281 | None:intergenic | 30.0% | |
| ACTAGTACATTACATCTTCA+TGG | + | Chr6:510741-510760 | None:intergenic | 30.0% | |
| AGGAAAACATGGATAAACTA+GGG | - | Chr6:508824-508843 | MsG0680030315.01.T01:intron | 30.0% | |
| AGTTGCATCACATGATTAAT+TGG | + | Chr6:508778-508797 | None:intergenic | 30.0% | |
| ATAACACAACATCAACATGT+CGG | + | Chr6:507804-507823 | None:intergenic | 30.0% | |
| CAAAGCATAATCATATATGC+TGG | + | Chr6:510104-510123 | None:intergenic | 30.0% | |
| CAACAGATAGAAATACGAAA+AGG | + | Chr6:508464-508483 | None:intergenic | 30.0% | |
| CATTAAAAACCTTTATGTCG+CGG | - | Chr6:508210-508229 | MsG0680030315.01.T01:intron | 30.0% | |
| CCAACTCATAATTAATGAGA+TGG | + | Chr6:510785-510804 | None:intergenic | 30.0% | |
| CCATCTCATTAATTATGAGT+TGG | - | Chr6:510782-510801 | MsG0680030315.01.T01:CDS | 30.0% | |
| CTGGCATCTAATATAAAACA+AGG | - | Chr6:509920-509939 | MsG0680030315.01.T01:intron | 30.0% | |
| CTTAACAGTAGCAAAGAAAT+TGG | + | Chr6:507655-507674 | None:intergenic | 30.0% | |
| GACCTTAAAAAGATGTAACA+TGG | + | Chr6:508280-508299 | None:intergenic | 30.0% | |
| GCATGGAATTTATATACCAA+TGG | - | Chr6:508846-508865 | MsG0680030315.01.T01:intron | 30.0% | |
| TAAACAAAAGAAAGACCGTA+AGG | + | Chr6:508365-508384 | None:intergenic | 30.0% | |
| TAGAACATCGTATTCAACAA+GGG | - | Chr6:509896-509915 | MsG0680030315.01.T01:intron | 30.0% | |
| TAGCCCAAAATATCACTTTA+TGG | + | Chr6:509234-509253 | None:intergenic | 30.0% | |
| TATCACTTCTAATAAGAGCA+CGG | - | Chr6:509252-509271 | MsG0680030315.01.T01:intron | 30.0% | |
| TATGCTTTGCAAAATCCTTA+AGG | - | Chr6:510115-510134 | MsG0680030315.01.T01:intron | 30.0% | |
| TATTTGCGCCAACTAATTAA+AGG | - | Chr6:510421-510440 | MsG0680030315.01.T01:CDS | 30.0% | |
| TCATTACATATAGTTGGACT+TGG | - | Chr6:509519-509538 | MsG0680030315.01.T01:CDS | 30.0% | |
| TCATTTAAACGAGAAGGAAA+AGG | + | Chr6:510704-510723 | None:intergenic | 30.0% | |
| TCCATTTCATTTAAACGAGA+AGG | + | Chr6:510710-510729 | None:intergenic | 30.0% | |
| TCCTTCTCGTTTAAATGAAA+TGG | - | Chr6:510706-510725 | MsG0680030315.01.T01:CDS | 30.0% | |
| TGTGAACATAAAAATGGTAG+AGG | - | Chr6:510538-510557 | MsG0680030315.01.T01:CDS | 30.0% | |
| TGTGTATTCATGAATCATGT+TGG | + | Chr6:509838-509857 | None:intergenic | 30.0% | |
| TTAGAACATCGTATTCAACA+AGG | - | Chr6:509895-509914 | MsG0680030315.01.T01:intron | 30.0% | |
| TTAGGCTTAAGTCTATATGT+TGG | + | Chr6:509671-509690 | None:intergenic | 30.0% | |
| TTTGTGATCCTTGATATTGT+GGG | - | Chr6:508130-508149 | MsG0680030315.01.T01:intron | 30.0% | |
| ! | AGATGATAGCTCTTTTATTC+GGG | + | Chr6:510221-510240 | None:intergenic | 30.0% |
| ! | GAGATGATAGCTCTTTTATT+CGG | + | Chr6:510222-510241 | None:intergenic | 30.0% |
| ! | TGGTGATGTGAACATAAAAA+TGG | - | Chr6:510532-510551 | MsG0680030315.01.T01:CDS | 30.0% |
| ! | TTAGTAGACTTGCTTAGATT+AGG | + | Chr6:509689-509708 | None:intergenic | 30.0% |
| ! | TTGAATTTTGTGTTTCAGAG+TGG | - | Chr6:508514-508533 | MsG0680030315.01.T01:intron | 30.0% |
| ! | TTGGGTTAAGTAACTCTTTT+TGG | - | Chr6:510962-510981 | MsG0680030315.01.T01:five_prime_UTR | 30.0% |
| !! | AAAATTTTGAAAGGGACATG+AGG | - | Chr6:510010-510029 | MsG0680030315.01.T01:intron | 30.0% |
| !! | ACCTACTTTAATTTTTCCCT+AGG | - | Chr6:510258-510277 | MsG0680030315.01.T01:intron | 30.0% |
| !!! | TTTTTGGAACCTTTATGTCA+CGG | - | Chr6:508254-508273 | MsG0680030315.01.T01:intron | 30.0% |
| !!! | TTTTTTGTCTTGATGATCTC+TGG | - | Chr6:507769-507788 | MsG0680030315.01.T01:CDS | 30.0% |
| AAAGAACTTGGAATAGTTGC+AGG | - | Chr6:508652-508671 | MsG0680030315.01.T01:intron | 35.0% | |
| AAATTATCCGGAAGTTAGAC+AGG | + | Chr6:509989-510008 | None:intergenic | 35.0% | |
| AATGCTGAAGGTTATTATGG+AGG | - | Chr6:507845-507864 | MsG0680030315.01.T01:CDS | 35.0% | |
| AGAAACAGAACATGCAAGTT+AGG | + | Chr6:509021-509040 | None:intergenic | 35.0% | |
| AGGTTGAATGATGAGTTCAT+TGG | + | Chr6:507688-507707 | None:intergenic | 35.0% | |
| ATGTATTGCGAAAGAAGGAA+AGG | - | Chr6:509408-509427 | MsG0680030315.01.T01:intron | 35.0% | |
| CAAAGTTAGGCATCTAATCA+AGG | - | Chr6:508594-508613 | MsG0680030315.01.T01:intron | 35.0% | |
| CATAGATAAGGTATAGAGGT+GGG | + | Chr6:508885-508904 | None:intergenic | 35.0% | |
| CGATCAAATTGCCAAAACAA+CGG | + | Chr6:508055-508074 | None:intergenic | 35.0% | |
| CGCCAACTAATTAAAGGAAT+AGG | - | Chr6:510427-510446 | MsG0680030315.01.T01:CDS | 35.0% | |
| CTTCTCTTCTCATCATCAAT+TGG | - | Chr6:507731-507750 | MsG0680030315.01.T01:CDS | 35.0% | |
| GAAAAATGACTGTGTAACCT+AGG | + | Chr6:510278-510297 | None:intergenic | 35.0% | |
| GAAATCAAGAAAGCAGTTCA+AGG | + | Chr6:508572-508591 | None:intergenic | 35.0% | |
| GAGAAAGAGAAAGAGAAAAG+AGG | - | Chr6:507491-507510 | MsG0680030315.01.T01:three_prime_UTR | 35.0% | |
| GATGTTGTGTTATGTTATGC+AGG | - | Chr6:507811-507830 | MsG0680030315.01.T01:CDS | 35.0% | |
| GTTGTTGCATATTGTACTGA+GGG | - | Chr6:510611-510630 | MsG0680030315.01.T01:intron | 35.0% | |
| GTTTGTGATCCTTGATATTG+TGG | - | Chr6:508129-508148 | MsG0680030315.01.T01:intron | 35.0% | |
| TAAAAATGGTAGAGGTTGCT+AGG | - | Chr6:510546-510565 | MsG0680030315.01.T01:CDS | 35.0% | |
| TACGATTTCCCACAATATCA+AGG | + | Chr6:508141-508160 | None:intergenic | 35.0% | |
| TATCAAGGATCACAAACAAC+CGG | + | Chr6:508126-508145 | None:intergenic | 35.0% | |
| TATGCAAGAGTTGGATTGTT+AGG | - | Chr6:507582-507601 | MsG0680030315.01.T01:three_prime_UTR | 35.0% | |
| TATTCCAAGTTCTTTCTCTG+CGG | + | Chr6:508647-508666 | None:intergenic | 35.0% | |
| TGAATGATGAGTTCATTGGA+AGG | + | Chr6:507684-507703 | None:intergenic | 35.0% | |
| TGCCTATTTGTTTGGACAAA+AGG | + | Chr6:510177-510196 | None:intergenic | 35.0% | |
| TGTCCAAACAAATAGGCAAA+TGG | - | Chr6:510179-510198 | MsG0680030315.01.T01:intron | 35.0% | |
| TGTGAAATCAATGCTTGAAG+TGG | - | Chr6:509384-509403 | MsG0680030315.01.T01:intron | 35.0% | |
| TGTTGTTGCATATTGTACTG+AGG | - | Chr6:510610-510629 | MsG0680030315.01.T01:intron | 35.0% | |
| TTATTTAGCAAGTGCCCTTA+CGG | - | Chr6:508347-508366 | MsG0680030315.01.T01:intron | 35.0% | |
| TTGTTGCATATTGTACTGAG+GGG | - | Chr6:510612-510631 | MsG0680030315.01.T01:intron | 35.0% | |
| ! | AGCACTATTGTAAAAGGTAC+AGG | + | Chr6:508987-509006 | None:intergenic | 35.0% |
| ! | ATCACTTCTAATAAGAGCAC+GGG | - | Chr6:509253-509272 | MsG0680030315.01.T01:intron | 35.0% |
| ! | ATGTTGGAACTTTTACCACT+GGG | + | Chr6:509822-509841 | None:intergenic | 35.0% |
| ! | CACCTTTTGTCCAAACAAAT+AGG | - | Chr6:510172-510191 | MsG0680030315.01.T01:intron | 35.0% |
| ! | CTCTTGCTATAATTTGATCG+TGG | - | Chr6:508006-508025 | MsG0680030315.01.T01:intron | 35.0% |
| ! | GAAAACACATGGGTTGAATA+TGG | - | Chr6:510852-510871 | MsG0680030315.01.T01:intron | 35.0% |
| ! | GAGATTTACCAGATTAGTTG+TGG | + | Chr6:510142-510161 | None:intergenic | 35.0% |
| ! | GCACTATTGTAAAAGGTACA+GGG | + | Chr6:508986-509005 | None:intergenic | 35.0% |
| ! | GCTTTTATAGGACTTCAACA+AGG | - | Chr6:508804-508823 | MsG0680030315.01.T01:intron | 35.0% |
| ! | GGCCATGTTACATCTTTTTA+AGG | - | Chr6:508275-508294 | MsG0680030315.01.T01:intron | 35.0% |
| ! | GTTGATAGGATAAATGCTGA+AGG | - | Chr6:507833-507852 | MsG0680030315.01.T01:CDS | 35.0% |
| ! | GTTTTGCTGAGGAAATAGTA+TGG | - | Chr6:508483-508502 | MsG0680030315.01.T01:intron | 35.0% |
| !! | CGTAGTTTAGAGCTTTTAGT+GGG | + | Chr6:509647-509666 | None:intergenic | 35.0% |
| !! | GCAACTTTCTCTGCTTTTAT+AGG | - | Chr6:508792-508811 | MsG0680030315.01.T01:intron | 35.0% |
| !! | GTAGTTTAGAGCTTTTAGTG+GGG | + | Chr6:509646-509665 | None:intergenic | 35.0% |
| !! | GTTATGTTATGCAGGTTGAT+AGG | - | Chr6:507819-507838 | MsG0680030315.01.T01:CDS | 35.0% |
| !! | TAAACTTTTAAGAGCCGACT+GGG | + | Chr6:509878-509897 | None:intergenic | 35.0% |
| !! | TCGTAGTTTAGAGCTTTTAG+TGG | + | Chr6:509648-509667 | None:intergenic | 35.0% |
| !! | TTAATGTCTCTAGAACATGG+CGG | + | Chr6:508196-508215 | None:intergenic | 35.0% |
| !! | TTATGGTGGACTAGTTTACA+TGG | - | Chr6:508699-508718 | MsG0680030315.01.T01:intron | 35.0% |
| !! | TTTCTGTAGCATTTGCTATG+AGG | - | Chr6:509122-509141 | MsG0680030315.01.T01:intron | 35.0% |
| !!! | TTCTATCTGTTGTTTTGCTG+AGG | - | Chr6:508472-508491 | MsG0680030315.01.T01:intron | 35.0% |
| !!! | TTGTTTTGGCAATTTGATCG+TGG | - | Chr6:508055-508074 | MsG0680030315.01.T01:intron | 35.0% |
| AAAACAGCAATTACCTTCGC+AGG | + | Chr6:509492-509511 | None:intergenic | 40.0% | |
| AACATGGATAAACTAGGGCA+TGG | - | Chr6:508829-508848 | MsG0680030315.01.T01:intron | 40.0% | |
| AAGTTGACGAGATCATGAGT+AGG | + | Chr6:507714-507733 | None:intergenic | 40.0% | |
| ACCTTCGCAGGTCAAAATTT+CGG | + | Chr6:509480-509499 | None:intergenic | 40.0% | |
| AGTTAGGCATCTAATCAAGG+TGG | - | Chr6:508597-508616 | MsG0680030315.01.T01:intron | 40.0% | |
| ATCTCAAGCAAAGCTTCTTG+AGG | - | Chr6:510637-510656 | MsG0680030315.01.T01:intron | 40.0% | |
| ATGTTTGGAGATGATGCACT+TGG | - | Chr6:510512-510531 | MsG0680030315.01.T01:CDS | 40.0% | |
| ATTGCCAAAACAACGGAATC+AGG | + | Chr6:508048-508067 | None:intergenic | 40.0% | |
| CACAAAGCATATGCAAGAGT+TGG | - | Chr6:507573-507592 | MsG0680030315.01.T01:three_prime_UTR | 40.0% | |
| CCTCTCAACAACAACAAAAC+TGG | + | Chr6:510879-510898 | None:intergenic | 40.0% | |
| CTAACCTTTCCAGAATCACT+AGG | + | Chr6:508916-508935 | None:intergenic | 40.0% | |
| CTTAAGGACCACAACTAATC+TGG | - | Chr6:510131-510150 | MsG0680030315.01.T01:intron | 40.0% | |
| GAAAGGTTAGTGTCATCGAA+TGG | - | Chr6:508926-508945 | MsG0680030315.01.T01:CDS | 40.0% | |
| GAGGATGAATGTCATAAAGC+AGG | - | Chr6:510656-510675 | MsG0680030315.01.T01:CDS | 40.0% | |
| GCATAGATAAGGTATAGAGG+TGG | + | Chr6:508886-508905 | None:intergenic | 40.0% | |
| GCGTCAAAATTTACAGGTAG+CGG | - | Chr6:510581-510600 | MsG0680030315.01.T01:intron | 40.0% | |
| GCTGCATAGATAAGGTATAG+AGG | + | Chr6:508889-508908 | None:intergenic | 40.0% | |
| GGACCATTTGCCTATTTGTT+TGG | + | Chr6:510185-510204 | None:intergenic | 40.0% | |
| GGACTTCAACAAGGAAAACA+TGG | - | Chr6:508813-508832 | MsG0680030315.01.T01:intron | 40.0% | |
| GTAGTCACATAGAATCTCAG+AGG | - | Chr6:510032-510051 | MsG0680030315.01.T01:intron | 40.0% | |
| GTCATAGGAGAGAGTGAAAT+TGG | + | Chr6:507948-507967 | None:intergenic | 40.0% | |
| TAGGATTCGCTGCATAGATA+AGG | + | Chr6:508897-508916 | None:intergenic | 40.0% | |
| TAGTTGCAGGTCTTCAAGAT+CGG | - | Chr6:508665-508684 | MsG0680030315.01.T01:intron | 40.0% | |
| TGAGATGGATATGCTTCTTC+TGG | + | Chr6:510770-510789 | None:intergenic | 40.0% | |
| TGGTTCAACTGCCTTAAACA+AGG | + | Chr6:508087-508106 | None:intergenic | 40.0% | |
| TTGCCGTAATAAACATCGCT+TGG | + | Chr6:507612-507631 | None:intergenic | 40.0% | |
| ! | AGCTCTTTTATTCGGGTGTT+AGG | + | Chr6:510214-510233 | None:intergenic | 40.0% |
| ! | CAGATTAGTTGTGGTCCTTA+AGG | + | Chr6:510133-510152 | None:intergenic | 40.0% |
| ! | CATGTTGGAACTTTTACCAC+TGG | + | Chr6:509823-509842 | None:intergenic | 40.0% |
| ! | GAATCCTAGTGATTCTGGAA+AGG | - | Chr6:508909-508928 | MsG0680030315.01.T01:CDS | 40.0% |
| ! | TCAAAATTTACAGGTAGCGG+AGG | - | Chr6:510584-510603 | MsG0680030315.01.T01:intron | 40.0% |
| ! | TCTTTTATTCGGGTGTTAGG+TGG | + | Chr6:510211-510230 | None:intergenic | 40.0% |
| ! | TGTGTTTCAGAGTGGACTTT+CGG | - | Chr6:508522-508541 | MsG0680030315.01.T01:intron | 40.0% |
| ! | TGTTGGAACTTTTACCACTG+GGG | + | Chr6:509821-509840 | None:intergenic | 40.0% |
| ! | TGTTTAAGGCAGTTGAACCA+TGG | - | Chr6:508087-508106 | MsG0680030315.01.T01:intron | 40.0% |
| ! | TTTGCTATGAGGCTAAGAAG+AGG | - | Chr6:509133-509152 | MsG0680030315.01.T01:intron | 40.0% |
| !! | AAACTTTTAAGAGCCGACTG+GGG | + | Chr6:509877-509896 | None:intergenic | 40.0% |
| !! | CTAAACTTTTAAGAGCCGAC+TGG | + | Chr6:509879-509898 | None:intergenic | 40.0% |
| !! | GCTACCTGTAAATTTTGACG+CGG | + | Chr6:510582-510601 | None:intergenic | 40.0% |
| !!! | CCAGTTTTGTTGTTGTTGAG+AGG | - | Chr6:510876-510895 | MsG0680030315.01.T01:intron | 40.0% |
| AAACAACCGGTGAGACCTAT+AGG | + | Chr6:508113-508132 | None:intergenic | 45.0% | |
| AACGGAATCAGGACGATTCA+AGG | + | Chr6:508037-508056 | None:intergenic | 45.0% | |
| AATGGTAGAGGTTGCTAGGA+AGG | - | Chr6:510550-510569 | MsG0680030315.01.T01:CDS | 45.0% | |
| ACAACATCAACATGTCGGTG+TGG | + | Chr6:507799-507818 | None:intergenic | 45.0% | |
| ACGAGATCATGAGTAGGATG+AGG | + | Chr6:507708-507727 | None:intergenic | 45.0% | |
| ACGAGGGATGTTAGTGTCAT+AGG | + | Chr6:507963-507982 | None:intergenic | 45.0% | |
| AGTTGCAGGTCTTCAAGATC+GGG | - | Chr6:508666-508685 | MsG0680030315.01.T01:intron | 45.0% | |
| ATCTAATCAAGGTGGAGGTG+AGG | - | Chr6:508605-508624 | MsG0680030315.01.T01:intron | 45.0% | |
| CATCGTATTCAACAAGGGTC+TGG | - | Chr6:509901-509920 | MsG0680030315.01.T01:intron | 45.0% | |
| CGAGAAGGAAAAGGTTCAAG+AGG | + | Chr6:510695-510714 | None:intergenic | 45.0% | |
| GGGAGTAGACTCAAATCCAT+TGG | + | Chr6:508865-508884 | None:intergenic | 45.0% | |
| GTAACATGGCCGTGACATAA+AGG | + | Chr6:508266-508285 | None:intergenic | 45.0% | |
| GTGGCATGTATTGCGAAAGA+AGG | - | Chr6:509403-509422 | MsG0680030315.01.T01:intron | 45.0% | |
| GTTCATGAGAGCTGCTAGTT+TGG | + | Chr6:509458-509477 | None:intergenic | 45.0% | |
| TAATTTGGGCCGCGACATAA+AGG | + | Chr6:508222-508241 | None:intergenic | 45.0% | |
| TAGGCATCTAATCAAGGTGG+AGG | - | Chr6:508600-508619 | MsG0680030315.01.T01:intron | 45.0% | |
| TCTGTGTGGCATCTTTCTTG+TGG | + | Chr6:509952-509971 | None:intergenic | 45.0% | |
| TGCAGGTACATAGCAAAGTG+CGG | - | Chr6:509332-509351 | MsG0680030315.01.T01:intron | 45.0% | |
| TTGATAGGTAGTCCTTCCCT+TGG | - | Chr6:509611-509630 | MsG0680030315.01.T01:intron | 45.0% | |
| ! | CGTGGTTTCGTCCTTGTTTA+AGG | - | Chr6:508073-508092 | MsG0680030315.01.T01:intron | 45.0% |
| ! | GTGTTTCAGAGTGGACTTTC+GGG | - | Chr6:508523-508542 | MsG0680030315.01.T01:intron | 45.0% |
| ! | TAGTCCTTCCCTTGGTTCTT+TGG | - | Chr6:509619-509638 | MsG0680030315.01.T01:intron | 45.0% |
| ! | TCGTCCTGATTCCGTTGTTT+TGG | - | Chr6:508041-508060 | MsG0680030315.01.T01:intron | 45.0% |
| !! | ACCGAAATTTTGACCTGCGA+AGG | - | Chr6:509476-509495 | MsG0680030315.01.T01:CDS | 45.0% |
| AGCACAAGTTCTTCCCCAGT+CGG | - | Chr6:509861-509880 | MsG0680030315.01.T01:intron | 50.0% | |
| AGTGGGGACCAAAGAACCAA+GGG | + | Chr6:509630-509649 | None:intergenic | 50.0% | |
| CATGCTGCCTGTCTAACTTC+CGG | - | Chr6:509979-509998 | MsG0680030315.01.T01:intron | 50.0% | |
| GCAGCGAATCCTAGTGATTC+TGG | - | Chr6:508904-508923 | MsG0680030315.01.T01:intron | 50.0% | |
| GCAGTTGAACCATGGCCTAT+AGG | - | Chr6:508095-508114 | MsG0680030315.01.T01:intron | 50.0% | |
| GGAGCCGCGTCAAAATTTAC+AGG | - | Chr6:510575-510594 | MsG0680030315.01.T01:intron | 50.0% | |
| GGAGTTGAGCTCAGTATCGT+CGG | - | Chr6:509750-509769 | MsG0680030315.01.T01:CDS | 50.0% | |
| GTAGAGGTTGCTAGGAAGGT+TGG | - | Chr6:510554-510573 | MsG0680030315.01.T01:intron | 50.0% | |
| TACATAGCAAAGTGCGGCAG+AGG | - | Chr6:509338-509357 | MsG0680030315.01.T01:intron | 50.0% | |
| TAGTGGGGACCAAAGAACCA+AGG | + | Chr6:509631-509650 | None:intergenic | 50.0% | |
| TATTCGGGTGTTAGGTGGAG+AGG | + | Chr6:510206-510225 | None:intergenic | 50.0% | |
| TGACACTAACATCCCTCGTC+AGG | - | Chr6:507964-507983 | MsG0680030315.01.T01:intron | 50.0% | |
| TGGAGGAGTTCGATTGCTCA+TGG | - | Chr6:507862-507881 | MsG0680030315.01.T01:CDS | 50.0% | |
| !! | AGTGGACTTTCGGGTTCTAG+TGG | - | Chr6:508532-508551 | MsG0680030315.01.T01:intron | 50.0% |
| !! | GTGGACTTTCGGGTTCTAGT+GGG | - | Chr6:508533-508552 | MsG0680030315.01.T01:intron | 50.0% |
| ATAGCAAAGTGCGGCAGAGG+TGG | - | Chr6:509341-509360 | MsG0680030315.01.T01:intron | 55.0% | |
| ATCCGGCTAAGAACGCCTTC+AGG | + | Chr6:508404-508423 | None:intergenic | 55.0% | |
| CAAGTTCTTTCTCTGCGGCG+AGG | + | Chr6:508642-508661 | None:intergenic | 55.0% | |
| CAGCATGGAGCTTGTCTGTG+TGG | + | Chr6:509966-509985 | None:intergenic | 55.0% | |
| CCACTGGGGTTTAGCACAAG+TGG | + | Chr6:509807-509826 | None:intergenic | 55.0% | |
| CCACTTGTGCTAAACCCCAG+TGG | - | Chr6:509804-509823 | MsG0680030315.01.T01:CDS | 55.0% | |
| CCATGGCCTATAGGTCTCAC+CGG | - | Chr6:508104-508123 | MsG0680030315.01.T01:intron | 55.0% | |
| CGGAAGTTAGACAGGCAGCA+TGG | + | Chr6:509981-510000 | None:intergenic | 55.0% | |
| CTAGAACATGGCGGCGATTG+AGG | + | Chr6:508187-508206 | None:intergenic | 55.0% | |
| CTCGCCGCAGAGAAAGAACT+TGG | - | Chr6:508640-508659 | MsG0680030315.01.T01:intron | 55.0% | |
| CTTTCTCTGCGGCGAGGATA+AGG | + | Chr6:508636-508655 | None:intergenic | 55.0% | |
| GATCGGGTGGCGCAAGTTTA+TGG | - | Chr6:508682-508701 | MsG0680030315.01.T01:intron | 55.0% | |
| GGGACCAAAGAACCAAGGGA+AGG | + | Chr6:509626-509645 | None:intergenic | 55.0% | |
| TAGCCAGTACAGTGCCCTGA+AGG | - | Chr6:508386-508405 | MsG0680030315.01.T01:intron | 55.0% | |
| TCCGGCTAAGAACGCCTTCA+GGG | + | Chr6:508403-508422 | None:intergenic | 55.0% | |
| TCGCGGCCCAAATTAGAGTC+AGG | - | Chr6:508227-508246 | MsG0680030315.01.T01:intron | 55.0% | |
| TCTGCGGCGAGGATAAGGTT+AGG | + | Chr6:508631-508650 | None:intergenic | 55.0% | |
| TGCAGGTCTTCAAGATCGGG+TGG | - | Chr6:508669-508688 | MsG0680030315.01.T01:intron | 55.0% | |
| AGCAGCAGCAGCAGCAGCAA+TGG | - | Chr6:507539-507558 | MsG0680030315.01.T01:three_prime_UTR | 60.0% | |
| CCGGTGAGACCTATAGGCCA+TGG | + | Chr6:508107-508126 | None:intergenic | 60.0% | |
| CGGGTGGCGCAAGTTTATGG+TGG | - | Chr6:508685-508704 | MsG0680030315.01.T01:intron | 60.0% | |
| !! | ACGCCTTCAGGGCACTGTAC+TGG | + | Chr6:508392-508411 | None:intergenic | 60.0% |
| !! | GCCCTGAAGGCGTTCTTAGC+CGG | - | Chr6:508399-508418 | MsG0680030315.01.T01:intron | 60.0% |
| GTGCGGCAGAGGTGGCTTGA+TGG | - | Chr6:509349-509368 | MsG0680030315.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 507417 | 510986 | 507417 | ID=MsG0680030315.01;Name=MsG0680030315.01 |
| Chr6 | mRNA | 507417 | 510986 | 507417 | ID=MsG0680030315.01.T01;Parent=MsG0680030315.01;Name=MsG0680030315.01.T01;_AED=0.49;_eAED=0.49;_QI=119|1|1|1|0.83|0.71|7|235|352 |
| Chr6 | exon | 507417 | 507895 | 507417 | ID=MsG0680030315.01.T01:exon:2174;Parent=MsG0680030315.01.T01 |
| Chr6 | exon | 508906 | 509066 | 508906 | ID=MsG0680030315.01.T01:exon:2173;Parent=MsG0680030315.01.T01 |
| Chr6 | exon | 509473 | 509589 | 509473 | ID=MsG0680030315.01.T01:exon:2172;Parent=MsG0680030315.01.T01 |
| Chr6 | exon | 509683 | 509871 | 509683 | ID=MsG0680030315.01.T01:exon:2171;Parent=MsG0680030315.01.T01 |
| Chr6 | exon | 510418 | 510570 | 510418 | ID=MsG0680030315.01.T01:exon:2170;Parent=MsG0680030315.01.T01 |
| Chr6 | exon | 510651 | 510862 | 510651 | ID=MsG0680030315.01.T01:exon:2169;Parent=MsG0680030315.01.T01 |
| Chr6 | exon | 510885 | 510986 | 510885 | ID=MsG0680030315.01.T01:exon:2168;Parent=MsG0680030315.01.T01 |
| Chr6 | five_prime_UTR | 510885 | 510986 | 510885 | ID=MsG0680030315.01.T01:five_prime_utr;Parent=MsG0680030315.01.T01 |
| Chr6 | five_prime_UTR | 510846 | 510862 | 510846 | ID=MsG0680030315.01.T01:five_prime_utr;Parent=MsG0680030315.01.T01 |
| Chr6 | CDS | 510651 | 510845 | 510651 | ID=MsG0680030315.01.T01:cds;Parent=MsG0680030315.01.T01 |
| Chr6 | CDS | 510418 | 510570 | 510418 | ID=MsG0680030315.01.T01:cds;Parent=MsG0680030315.01.T01 |
| Chr6 | CDS | 509683 | 509871 | 509683 | ID=MsG0680030315.01.T01:cds;Parent=MsG0680030315.01.T01 |
| Chr6 | CDS | 509473 | 509589 | 509473 | ID=MsG0680030315.01.T01:cds;Parent=MsG0680030315.01.T01 |
| Chr6 | CDS | 508906 | 509066 | 508906 | ID=MsG0680030315.01.T01:cds;Parent=MsG0680030315.01.T01 |
| Chr6 | CDS | 507652 | 507895 | 507652 | ID=MsG0680030315.01.T01:cds;Parent=MsG0680030315.01.T01 |
| Chr6 | three_prime_UTR | 507417 | 507651 | 507417 | ID=MsG0680030315.01.T01:three_prime_utr;Parent=MsG0680030315.01.T01 |
| Gene Sequence |
| Protein sequence |
