AlfalfaGEDB | MsG0280007233.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007233.01

KEGG: -
GO: GO:0003677
PFAM: PF00249

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007233.01.T01	XP_013462813.1	97.403	77	2	0	1	77	1	77	4.87E-49	159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007233.01.T01	O22059	63.636	44	16	0	27	70	36	79	1.67E-16	70.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007233.01.T01	A0A072V6B3	97.403	77	2	0	1	77	1	77	2.32e-49	159

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0280007233.01	-0.816947	4.251648e-52	3.055164e-49
MsG0080047910.01	MsG0280007233.01	0.833193	6.138939e-56	7.018314e-53
MsG0080047967.01	MsG0280007233.01	0.870734	1.166102e-66	4.584587e-63
MsG0080048036.01	MsG0280007233.01	-0.814244	1.700408e-51	1.134998e-48
MsG0080048059.01	MsG0280007233.01	0.877785	4.754271e-69	2.421563e-65
MsG0080048486.01	MsG0280007233.01	-0.838607	2.601203e-57	3.502208e-54
MsG0080048487.01	MsG0280007233.01	-0.833001	6.853183e-56	7.790236e-53
MsG0080048488.01	MsG0280007233.01	-0.837106	6.319679e-57	8.125943e-54
MsG0080048489.01	MsG0280007233.01	-0.833937	4.001452e-56	4.678238e-53
MsG0080048560.01	MsG0280007233.01	0.801686	8.009384e-49	3.848927e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007233.01.T01	MTR_2g023100	97.403	77	2	0	1	77	1	77	5.89e-53	159
MsG0280007233.01.T01	MTR_4g046737	49.333	75	35	2	1	74	1	73	4.70e-20	76.3
MsG0280007233.01.T01	MTR_2g088730	59.184	49	20	0	27	75	32	80	1.19e-17	70.5
MsG0280007233.01.T01	MTR_5g009460	42.647	68	36	1	7	74	20	84	9.33e-15	63.2
MsG0280007233.01.T01	MTR_3g083540	51.111	45	22	0	28	72	98	142	2.36e-12	60.5
MsG0280007233.01.T01	MTR_4g100720	37.662	77	38	1	5	71	37	113	7.43e-12	57.8
MsG0280007233.01.T01	MTR_7g117730	51.163	43	21	0	30	72	71	113	1.57e-11	57.8
MsG0280007233.01.T01	MTR_0197s0010	47.727	44	23	0	29	72	59	102	1.58e-11	57.8
MsG0280007233.01.T01	MTR_8g060940	47.727	44	23	0	29	72	65	108	2.64e-11	57.0
MsG0280007233.01.T01	MTR_0247s0040	45.455	44	24	0	28	71	64	107	2.78e-11	56.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007233.01.T01	AT2G46410	63.636	44	16	0	27	70	36	79	1.70e-17	70.5
MsG0280007233.01.T01	AT4G01060	50.000	64	29	1	7	70	16	76	5.70e-16	65.9
MsG0280007233.01.T01	AT1G01380	56.818	44	19	0	27	70	32	75	1.51e-15	65.1
MsG0280007233.01.T01	AT5G53200	52.000	50	24	0	27	76	31	80	2.03e-15	65.5
MsG0280007233.01.T01	AT4G01060	60.000	45	18	0	26	70	29	73	2.10e-15	64.3
MsG0280007233.01.T01	AT4G01060	60.000	45	18	0	26	70	30	74	2.71e-15	64.3
MsG0280007233.01.T01	AT2G30420	36.111	72	43	1	1	72	15	83	1.74e-12	58.2
MsG0280007233.01.T01	AT2G30424	50.000	44	22	0	27	70	34	77	4.93e-12	56.6
MsG0280007233.01.T01	AT5G52600	45.455	44	24	0	29	72	70	113	1.09e-11	57.8
MsG0280007233.01.T01	AT5G14750	43.182	44	25	0	29	72	13	56	2.21e-11	55.8

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Find 27 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGATATCTTCCTCTTCTG+GGG	0.611771	2:+12344727	None:intergenic
AATGGCCAGTATGTCTCTTC+AGG	0.479277	2:-12344956	MsG0280007233.01.T01:intron
AATTACACAATAATTTGCTC+AGG	0.510754	2:+12344408	None:intergenic
AGGAACTTAGAATGGTACTT+AGG	0.533310	2:+12344428	None:intergenic
ATAATTTCAAACCATGCATA+TGG	0.386582	2:+12344183	None:intergenic
ATACTGGCCATTGTTTGCAG+TGG	0.645184	2:+12344967	None:intergenic
ATATCTTCTGGGGTTCTTCC+AGG	0.255062	2:+12344509	None:intergenic
ATATTTGTGGATAAAGATGT+AGG	0.506418	2:+12344122	None:intergenic
ATTATATTGATCCATATGCA+TGG	0.574143	2:-12344194	MsG0280007233.01.T01:three_prime_UTR
ATTTGCTCAGGAACTTAGAA+TGG	0.468776	2:+12344420	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTTGCAAAAATGTTTAGAT+TGG	-	Chr2:12344371-12344390	MsG0280007233.01.T01:three_prime_UTR	30.0%
GCAAAAATGTTTAGATTGGT+CGG	-	Chr2:12344375-12344394	MsG0280007233.01.T01:three_prime_UTR	30.0%
TCATGTGTTTGTATTGTAGA+AGG	-	Chr2:12344488-12344507	MsG0280007233.01.T01:CDS	30.0%
AGGAACTTAGAATGGTACTT+AGG	+	Chr2:12344654-12344673	None:intergenic	35.0%
ATAAGATGGTCAACTTGAAG+TGG	+	Chr2:12344151-12344170	None:intergenic	35.0%
ATCAAGTTTGTGCAAATGCA+AGG	+	Chr2:12344455-12344474	None:intergenic	35.0%
ATTTGCTCAGGAACTTAGAA+TGG	+	Chr2:12344662-12344681	None:intergenic	35.0%
AACGATATCTTCCTCTTCTG+GGG	+	Chr2:12344355-12344374	None:intergenic	40.0%
CAACGATATCTTCCTCTTCT+GGG	+	Chr2:12344356-12344375	None:intergenic	40.0%
GCATTTGCACAAACTTGATG+AGG	-	Chr2:12344456-12344475	MsG0280007233.01.T01:exon	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	12344041	12345060	12344041	ID=MsG0280007233.01;Name=MsG0280007233.01
Chr2	mRNA	12344041	12345060	12344041	ID=MsG0280007233.01.T01;Parent=MsG0280007233.01;Name=MsG0280007233.01.T01;_AED=0.19;_eAED=0.19;_QI=49\|1\|1\|1\|0.5\|0.33\|3\|422\|77
Chr2	exon	12344041	12344556	12344041	ID=MsG0280007233.01.T01:exon:2826;Parent=MsG0280007233.01.T01
Chr2	exon	12344698	12344782	12344698	ID=MsG0280007233.01.T01:exon:2825;Parent=MsG0280007233.01.T01
Chr2	exon	12344957	12345060	12344957	ID=MsG0280007233.01.T01:exon:2824;Parent=MsG0280007233.01.T01
Chr2	five_prime_UTR	12345012	12345060	12345012	ID=MsG0280007233.01.T01:five_prime_utr;Parent=MsG0280007233.01.T01
Chr2	CDS	12344957	12345011	12344957	ID=MsG0280007233.01.T01:cds;Parent=MsG0280007233.01.T01
Chr2	CDS	12344698	12344782	12344698	ID=MsG0280007233.01.T01:cds;Parent=MsG0280007233.01.T01
Chr2	CDS	12344463	12344556	12344463	ID=MsG0280007233.01.T01:cds;Parent=MsG0280007233.01.T01
Chr2	three_prime_UTR	12344041	12344462	12344041	ID=MsG0280007233.01.T01:three_prime_utr;Parent=MsG0280007233.01.T01

Gene Sequence	>MsG0280007233.01.T01 ATGAGTGACTCAAAGTATGCAACCACTGCAAACAATGGCCAGTATGTCTCTTCAGATCAGATGAAACGTGAGGCTGTGCTGGAATTTTCCCCAGAAGAGGAAGATATCGTTGCAAAAATGTTTAGATTGGTCGGAAAGAGATGGCATCTCATTGCTGGGAGAATCCCTGGAAGAACCCCAGAAGATATTGAAAAGTATTGGACATCAAAGTTCTCATCATCAACTGCATGCTAA
Protein sequence	>MsG0280007233.01.T01 MSDSKYATTANNGQYVSSDQMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTPEDIEKYWTSKFSSSTAC*