AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007488.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007488.01.T01 MTR_3g083230 70.930 172 49 1 10 180 47 218 1.46e-89 261
MsG0280007488.01.T01 MTR_3g082350 66.154 65 18 1 98 162 8 68 7.05e-24 90.9
MsG0280007488.01.T01 MTR_3g083240 63.462 52 19 0 97 148 83 134 3.32e-17 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007488.01.T01 AT5G23070 69.091 165 50 1 10 173 107 271 4.93e-86 254
MsG0280007488.01.T01 AT3G07800 66.871 163 54 0 10 172 61 223 1.05e-82 244

Find 55 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAATTATGCATGTATTAT+AGG 0.187727 2:+16117270 MsG0280007488.01.T01:three_prime_UTR
ACCTATAATACATGCATAAT+TGG 0.218362 2:-16117271 None:intergenic
CGTAACTTGGTCTTTATAAA+TGG 0.255240 2:+16117008 MsG0280007488.01.T01:three_prime_UTR
TGAGAGAGGTGACCTGCTTT+TGG 0.270513 2:+16117187 MsG0280007488.01.T01:three_prime_UTR
GTTTATCTTGTGTCTTCCTC+AGG 0.324746 2:-16116809 None:intergenic
TGTTTAATCAATAGCACCTT+TGG 0.328089 2:-16117122 None:intergenic
TCATCATTCAAGCAGAAGTT+TGG 0.337356 2:+16115466 MsG0280007488.01.T01:CDS
AAGAAAAGTGTAATCATGTA+TGG 0.392209 2:-16116956 None:intergenic
TCAAGCAAGGATACAAGATA+TGG 0.415175 2:+16115382 MsG0280007488.01.T01:CDS
GATTCAATTGTTACACATGA+TGG 0.418608 2:+16115409 MsG0280007488.01.T01:CDS
GTCATAGTTGCAGGGCTAGA+TGG 0.425560 2:+16115749 MsG0280007488.01.T01:CDS
TGGAGTTGATGCTTATGATC+AGG 0.442719 2:+16115486 MsG0280007488.01.T01:CDS
TTTACTGTCAGGAAGAGCTT+TGG 0.448304 2:+16116699 MsG0280007488.01.T01:intron
ATTTATAAAGACCAAGTTAC+GGG 0.452724 2:-16117006 None:intergenic
AACAAGCTTCATTCAGCTGA+TGG 0.464639 2:+16117141 MsG0280007488.01.T01:three_prime_UTR
CTTCATTCAGCTGATGGATG+TGG 0.464995 2:+16117147 MsG0280007488.01.T01:three_prime_UTR
TAATGACAGCTGGACGTGAT+TGG 0.466783 2:+16115653 MsG0280007488.01.T01:intron
GTTGTGTTAGATTGTGAGGT+TGG 0.477514 2:+16117210 MsG0280007488.01.T01:three_prime_UTR
TTTATCTTGTGTCTTCCTCA+GGG 0.502219 2:-16116808 None:intergenic
GTTACGGGAGGCAGAAAAGA+AGG 0.516646 2:-16116991 None:intergenic
TAGGTTATGTATGTGTAACT+TGG 0.517490 2:+16117289 MsG0280007488.01.T01:three_prime_UTR
TGGTGCTAAACTACCGTGTT+GGG 0.520154 2:+16115429 MsG0280007488.01.T01:CDS
CGTGAAGCTGCTGATCATGA+TGG 0.526142 2:+16115719 MsG0280007488.01.T01:CDS
TGTCGGCAGCACTATGTCAA+TGG 0.527280 2:+16116873 MsG0280007488.01.T01:CDS
CACATGTCGTGCTGTTTCGA+CGG 0.531234 2:-16116904 None:intergenic
GATAAACAAGTTGAGTTGAT+CGG 0.533960 2:+16116825 MsG0280007488.01.T01:CDS
TTGGGTTGTGTTAGATTGTG+AGG 0.539004 2:+16117206 MsG0280007488.01.T01:three_prime_UTR
CATTTATAAAGACCAAGTTA+CGG 0.542028 2:-16117007 None:intergenic
TATGTTTGTGGAGCTTATGT+TGG 0.542402 2:+16115229 None:intergenic
ATCTAACACAACCCAAAAGC+AGG 0.547936 2:-16117199 None:intergenic
GGCAATAATTAAATCAAGCA+AGG 0.547964 2:+16115369 MsG0280007488.01.T01:CDS
AATGCTCAATGTGAAATATG+TGG 0.552708 2:+16116768 MsG0280007488.01.T01:CDS
AGAAAAGTGTAATCATGTAT+GGG 0.557736 2:-16116955 None:intergenic
TGGATGTATCGATATGTTTG+TGG 0.571374 2:+16115217 None:intergenic
CTTCACGACAGAAATCATAA+AGG 0.573452 2:-16115703 None:intergenic
ACTTAGTTATAGAATCAGCA+AGG 0.574502 2:-16116743 None:intergenic
GGCTAGATGGCGATTACTTG+AGG 0.576624 2:+16115762 MsG0280007488.01.T01:CDS
ACATGTGGTGGAATCTAAGA+AGG 0.580642 2:+16116920 MsG0280007488.01.T01:CDS
CTTAGTTATAGAATCAGCAA+GGG 0.586015 2:-16116742 None:intergenic
CGAAACAGCACGACATGTGG+TGG 0.586315 2:+16116908 MsG0280007488.01.T01:CDS
GCAGCACTATGTCAATGGAC+AGG 0.592326 2:+16116878 MsG0280007488.01.T01:CDS
TCAAAGAGTTCAAATGAGAG+AGG 0.604468 2:+16117173 MsG0280007488.01.T01:three_prime_UTR
ATGCTCAATGTGAAATATGT+GGG 0.614812 2:+16116769 MsG0280007488.01.T01:CDS
ATGGTGCTAAACTACCGTGT+TGG 0.615574 2:+16115428 MsG0280007488.01.T01:CDS
ACATAGTGCTGCCGACACAC+TGG 0.615844 2:-16116867 None:intergenic
CGTCGAAACAGCACGACATG+TGG 0.624710 2:+16116905 MsG0280007488.01.T01:CDS
AAACAAGTTGAGTTGATCGG+TGG 0.636354 2:+16116828 MsG0280007488.01.T01:CDS
GTTTCTTTGATGCAGAAACG+TGG 0.640852 2:+16115348 MsG0280007488.01.T01:intron
CAGCAAGGGGAATTATGTCA+AGG 0.641729 2:-16116728 None:intergenic
ATGTCTACATGCCAGTGTGT+CGG 0.645366 2:+16116856 MsG0280007488.01.T01:CDS
TATAAAGACCAAGTTACGGG+AGG 0.654391 2:-16117003 None:intergenic
ACATTAAAACAACATTGACA+TGG 0.669501 2:-16117087 None:intergenic
GAATCTAAGAAGGTTGAATG+CGG 0.707909 2:+16116930 MsG0280007488.01.T01:CDS
TTAGTTATAGAATCAGCAAG+GGG 0.709697 2:-16116741 None:intergenic
AAATTTGATAGTGCCCAACA+CGG 0.716068 2:-16115442 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGAATTAAATTGACTTTT+TGG - Chr2:16115967-16115986 None:intergenic 15.0%
!!! AAGAATTAAATTGACTTTTT+GGG - Chr2:16115966-16115985 None:intergenic 15.0%
!!! TAGATTTACTTTTAATTAGT+AGG - Chr2:16117044-16117063 None:intergenic 15.0%
!! AATCAAATCGAAAATTTGTA+TGG - Chr2:16116000-16116019 None:intergenic 20.0%
!! TAGTATCATTTCAAAACATT+GGG - Chr2:16115845-16115864 None:intergenic 20.0%
!!! ACAAATTTTCGATTTGATTA+TGG + Chr2:16116001-16116020 MsG0280007488.01.T01:intron 20.0%
!!! AGAATTAAATTGACTTTTTG+GGG - Chr2:16115965-16115984 None:intergenic 20.0%
!!! ATGTTTTATTCTAAATCCAA+AGG + Chr2:16117106-16117125 MsG0280007488.01.T01:three_prime_UTR 20.0%
!!! GATACATTATTTAGTTCAAA+GGG + Chr2:16116259-16116278 MsG0280007488.01.T01:intron 20.0%
!!! TAATAATTCCCTTTGTTTTT+GGG + Chr2:16115809-16115828 MsG0280007488.01.T01:intron 20.0%
!!! TTAATAATTCCCTTTGTTTT+TGG + Chr2:16115808-16115827 MsG0280007488.01.T01:intron 20.0%
!!! TTTTTATTCAATGCAAAACT+AGG + Chr2:16116103-16116122 MsG0280007488.01.T01:intron 20.0%
! AATCATATACCTAAACGATA+AGG - Chr2:16115318-16115337 None:intergenic 25.0%
! AATTTGACATTATCAACTGA+TGG + Chr2:16116666-16116685 MsG0280007488.01.T01:intron 25.0%
! ACATTAAAACAACATTGACA+TGG - Chr2:16117090-16117109 None:intergenic 25.0%
! ACCAATTATGCATGTATTAT+AGG + Chr2:16117270-16117289 MsG0280007488.01.T01:three_prime_UTR 25.0%
! ACCTATAATACATGCATAAT+TGG - Chr2:16117274-16117293 None:intergenic 25.0%
! ATATCAAGAACAATATAGCT+TGG - Chr2:16116398-16116417 None:intergenic 25.0%
! ATTTATAAAGACCAAGTTAC+GGG - Chr2:16117009-16117028 None:intergenic 25.0%
! CAGAATACATGAATGAATTA+TGG - Chr2:16116074-16116093 None:intergenic 25.0%
! CATTTATAAAGACCAAGTTA+CGG - Chr2:16117010-16117029 None:intergenic 25.0%
! CTAAAAGATAAACCACAATA+GGG - Chr2:16115268-16115287 None:intergenic 25.0%
! CTTGATATAACTCATAAAGA+CGG - Chr2:16115885-16115904 None:intergenic 25.0%
! GTAGTATCATTTCAAAACAT+TGG - Chr2:16115846-16115865 None:intergenic 25.0%
! TGTTTAACTGCCTATATTAT+TGG + Chr2:16115534-16115553 MsG0280007488.01.T01:intron 25.0%
!! AAGAAAAGTGTAATCATGTA+TGG - Chr2:16116959-16116978 None:intergenic 25.0%
!! AGAAAAGTGTAATCATGTAT+GGG - Chr2:16116958-16116977 None:intergenic 25.0%
!! CGATACATTATTTAGTTCAA+AGG + Chr2:16116258-16116277 MsG0280007488.01.T01:intron 25.0%
!! TTACTAGGGATTTTATCATT+AGG + Chr2:16116634-16116653 MsG0280007488.01.T01:intron 25.0%
!! TTTCGATTTGATTATGGTTA+TGG + Chr2:16116007-16116026 MsG0280007488.01.T01:intron 25.0%
!!! AATTAAATTGACTTTTTGGG+GGG - Chr2:16115963-16115982 None:intergenic 25.0%
!!! ATTTTTAGCTCTTGTAACAT+AGG + Chr2:16116424-16116443 MsG0280007488.01.T01:intron 25.0%
!!! CAACAAGTCTTATTTTACTA+GGG + Chr2:16116620-16116639 MsG0280007488.01.T01:intron 25.0%
!!! GAATTAAATTGACTTTTTGG+GGG - Chr2:16115964-16115983 None:intergenic 25.0%
!!! TCAACAAGTCTTATTTTACT+AGG + Chr2:16116619-16116638 MsG0280007488.01.T01:intron 25.0%
!!! TTTTTAGCTCTTGTAACATA+GGG + Chr2:16116425-16116444 MsG0280007488.01.T01:intron 25.0%
AAATGAAGGCAGTAAACTAT+AGG - Chr2:16115609-16115628 None:intergenic 30.0%
AATCGAAAATTTGTATGGCT+TGG - Chr2:16115995-16116014 None:intergenic 30.0%
AATGCTCAATGTGAAATATG+TGG + Chr2:16116768-16116787 MsG0280007488.01.T01:CDS 30.0%
ACTTAGTTATAGAATCAGCA+AGG - Chr2:16116746-16116765 None:intergenic 30.0%
ATGCTCAATGTGAAATATGT+GGG + Chr2:16116769-16116788 MsG0280007488.01.T01:CDS 30.0%
CCTAAAAGATAAACCACAAT+AGG - Chr2:16115269-16115288 None:intergenic 30.0%
CTTAGTTATAGAATCAGCAA+GGG - Chr2:16116745-16116764 None:intergenic 30.0%
GACAACACAAACTTAGATAT+TGG - Chr2:16116190-16116209 None:intergenic 30.0%
GATTCAATTGTTACACATGA+TGG + Chr2:16115409-16115428 MsG0280007488.01.T01:CDS 30.0%
GGCAATAATTAAATCAAGCA+AGG + Chr2:16115369-16115388 MsG0280007488.01.T01:CDS 30.0%
TAGGTTATGTATGTGTAACT+TGG + Chr2:16117289-16117308 MsG0280007488.01.T01:three_prime_UTR 30.0%
TGCAAAACTAGGAATAAAAC+TGG + Chr2:16116114-16116133 MsG0280007488.01.T01:intron 30.0%
TGTTTAATCAATAGCACCTT+TGG - Chr2:16117125-16117144 None:intergenic 30.0%
TTAGTTATAGAATCAGCAAG+GGG - Chr2:16116744-16116763 None:intergenic 30.0%
! AAAATTTGTATGGCTTGGAA+TGG - Chr2:16115990-16116009 None:intergenic 30.0%
! ACAAACCACTATGTTTTATG+AGG + Chr2:16116327-16116346 MsG0280007488.01.T01:intron 30.0%
! CCTATTGTGGTTTATCTTTT+AGG + Chr2:16115266-16115285 MsG0280007488.01.T01:intron 30.0%
! CGTAACTTGGTCTTTATAAA+TGG + Chr2:16117008-16117027 MsG0280007488.01.T01:three_prime_UTR 30.0%
! GGGATTTTATCATTAGGTTA+TGG + Chr2:16116640-16116659 MsG0280007488.01.T01:intron 30.0%
!! CAAGTTGATTATTGATTTCG+AGG + Chr2:16116475-16116494 MsG0280007488.01.T01:intron 30.0%
!! GAGGTATTGTTACTTATGAT+TGG + Chr2:16115781-16115800 MsG0280007488.01.T01:intron 30.0%
!! GATAAACAAGTTGAGTTGAT+CGG + Chr2:16116825-16116844 MsG0280007488.01.T01:CDS 30.0%
!! TGGTGAACTTTTAGAAATGT+GGG + Chr2:16117230-16117249 MsG0280007488.01.T01:three_prime_UTR 30.0%
!! TTGGTGAACTTTTAGAAATG+TGG + Chr2:16117229-16117248 MsG0280007488.01.T01:three_prime_UTR 30.0%
AACTGATAGATAATGACAGC+TGG + Chr2:16115643-16115662 MsG0280007488.01.T01:intron 35.0%
AAGTTTGTGTTGTCAAGTGA+CGG + Chr2:16116196-16116215 MsG0280007488.01.T01:intron 35.0%
ACGTTGCAAAACTTCAAAAC+AGG - Chr2:16115515-16115534 None:intergenic 35.0%
ATTATGCTTGACTGGAAAGA+TGG - Chr2:16116550-16116569 None:intergenic 35.0%
CAGCCACAAACCAATAATAT+AGG - Chr2:16115547-16115566 None:intergenic 35.0%
CTTCACGACAGAAATCATAA+AGG - Chr2:16115706-16115725 None:intergenic 35.0%
CTTTCATTCCAACAAGTACT+TGG - Chr2:16116372-16116391 None:intergenic 35.0%
GAAAAACAGTCATAGTTGCA+GGG + Chr2:16115741-16115760 MsG0280007488.01.T01:CDS 35.0%
GAATCTAAGAAGGTTGAATG+CGG + Chr2:16116930-16116949 MsG0280007488.01.T01:CDS 35.0%
GTGAGAGTCAAACAAAATGA+AGG - Chr2:16115623-16115642 None:intergenic 35.0%
TATGTAGGAATTCCCTATTG+TGG + Chr2:16115253-16115272 MsG0280007488.01.T01:intron 35.0%
TCAAAGAGTTCAAATGAGAG+AGG + Chr2:16117173-16117192 MsG0280007488.01.T01:three_prime_UTR 35.0%
TCAAGCAAGGATACAAGATA+TGG + Chr2:16115382-16115401 MsG0280007488.01.T01:CDS 35.0%
TCATCATTCAAGCAGAAGTT+TGG + Chr2:16115466-16115485 MsG0280007488.01.T01:CDS 35.0%
TTATGGTTACTAGTCACTCT+AGG + Chr2:16116024-16116043 MsG0280007488.01.T01:intron 35.0%
TTCAAAGGGTTGTCAAAATG+TGG + Chr2:16116273-16116292 MsG0280007488.01.T01:intron 35.0%
TTGCACCTCATAAAACATAG+TGG - Chr2:16116335-16116354 None:intergenic 35.0%
TTTATCTTGTGTCTTCCTCA+GGG - Chr2:16116811-16116830 None:intergenic 35.0%
! AATTGGCTCAAATCAAGTCT+AGG - Chr2:16116527-16116546 None:intergenic 35.0%
! AGTACTTGTTGGAATGAAAG+TGG + Chr2:16116372-16116391 MsG0280007488.01.T01:intron 35.0%
! ATTGGCTCAAATCAAGTCTA+GGG - Chr2:16116526-16116545 None:intergenic 35.0%
! GTCACTCTAGGAAAAAAAAG+TGG + Chr2:16116036-16116055 MsG0280007488.01.T01:intron 35.0%
! GTGTTTCTGTATTTACTGTC+AGG + Chr2:16116688-16116707 MsG0280007488.01.T01:intron 35.0%
! GTTTTATGAGGTGCAATTGA+CGG + Chr2:16116339-16116358 MsG0280007488.01.T01:intron 35.0%
!! AAATTTGATAGTGCCCAACA+CGG - Chr2:16115445-16115464 None:intergenic 35.0%
!! CTGCCTATATTATTGGTTTG+TGG + Chr2:16115541-16115560 MsG0280007488.01.T01:intron 35.0%
!! CTTTTAGGAAAGCCACAATA+TGG + Chr2:16115281-16115300 MsG0280007488.01.T01:intron 35.0%
!!! AATTCCCTTTGTTTTTGGGA+GGG + Chr2:16115813-16115832 MsG0280007488.01.T01:intron 35.0%
!!! AGAATGCTTATTTTACCCTG+AGG + Chr2:16116793-16116812 MsG0280007488.01.T01:CDS 35.0%
!!! TAATTCCCTTTGTTTTTGGG+AGG + Chr2:16115812-16115831 MsG0280007488.01.T01:intron 35.0%
AAACTATAGGAAGGCTTGGA+GGG - Chr2:16115596-16115615 None:intergenic 40.0%
AACAAGCTTCATTCAGCTGA+TGG + Chr2:16117141-16117160 MsG0280007488.01.T01:three_prime_UTR 40.0%
AGGAAAGCCACAATATGGTT+CGG + Chr2:16115286-16115305 MsG0280007488.01.T01:intron 40.0%
ATCTAACACAACCCAAAAGC+AGG - Chr2:16117202-16117221 None:intergenic 40.0%
CAGTAAACTATAGGAAGGCT+TGG - Chr2:16115600-16115619 None:intergenic 40.0%
CTCTTGTAACATAGGGAGTA+GGG + Chr2:16116432-16116451 MsG0280007488.01.T01:intron 40.0%
CTTGACTGGAAAGATGGAAT+TGG - Chr2:16116544-16116563 None:intergenic 40.0%
GAAGGCAGTAAACTATAGGA+AGG - Chr2:16115605-16115624 None:intergenic 40.0%
GCATTAAGCCAAGTACTTGT+TGG + Chr2:16116361-16116380 MsG0280007488.01.T01:intron 40.0%
GGAAAAACAGTCATAGTTGC+AGG + Chr2:16115740-16115759 MsG0280007488.01.T01:CDS 40.0%
GGAGCTTATGTTGGATATGT+AGG + Chr2:16115238-16115257 MsG0280007488.01.T01:intron 40.0%
GTTGTGTTAGATTGTGAGGT+TGG + Chr2:16117210-16117229 MsG0280007488.01.T01:three_prime_UTR 40.0%
GTTTATCTTGTGTCTTCCTC+AGG - Chr2:16116812-16116831 None:intergenic 40.0%
GTTTCTTTGATGCAGAAACG+TGG + Chr2:16115348-16115367 MsG0280007488.01.T01:intron 40.0%
TAAACTATAGGAAGGCTTGG+AGG - Chr2:16115597-16115616 None:intergenic 40.0%
TATAAAGACCAAGTTACGGG+AGG - Chr2:16117006-16117025 None:intergenic 40.0%
TGAGCTTGATTATGCTTGAC+TGG - Chr2:16116558-16116577 None:intergenic 40.0%
TTTACTGTCAGGAAGAGCTT+TGG + Chr2:16116699-16116718 MsG0280007488.01.T01:intron 40.0%
! ACATGTGGTGGAATCTAAGA+AGG + Chr2:16116920-16116939 MsG0280007488.01.T01:CDS 40.0%
! TTGGGTTGTGTTAGATTGTG+AGG + Chr2:16117206-16117225 MsG0280007488.01.T01:three_prime_UTR 40.0%
! TTTCCTTTTGATCCCATGCA+TGG - Chr2:16116147-16116166 None:intergenic 40.0%
!! AAACAAGTTGAGTTGATCGG+TGG + Chr2:16116828-16116847 MsG0280007488.01.T01:CDS 40.0%
!! AATTGACTTTTTGGGGGGTT+TGG - Chr2:16115958-16115977 None:intergenic 40.0%
!! TGGAGTTGATGCTTATGATC+AGG + Chr2:16115486-16115505 MsG0280007488.01.T01:CDS 40.0%
AACTATAGGAAGGCTTGGAG+GGG - Chr2:16115595-16115614 None:intergenic 45.0%
AACTGGAAGAACACCATGCA+TGG + Chr2:16116131-16116150 MsG0280007488.01.T01:intron 45.0%
ACACCATGCATGGGATCAAA+AGG + Chr2:16116141-16116160 MsG0280007488.01.T01:intron 45.0%
ACTGGAAGAACACCATGCAT+GGG + Chr2:16116132-16116151 MsG0280007488.01.T01:intron 45.0%
AGTAGGGTGTGCTAACACAA+GGG + Chr2:16116448-16116467 MsG0280007488.01.T01:intron 45.0%
ATGTCTACATGCCAGTGTGT+CGG + Chr2:16116856-16116875 MsG0280007488.01.T01:CDS 45.0%
CAGCAAGGGGAATTATGTCA+AGG - Chr2:16116731-16116750 None:intergenic 45.0%
GCTATAGCGTTGTAGCTTAG+TGG + Chr2:16116297-16116316 MsG0280007488.01.T01:intron 45.0%
GCTATTGCCGAACCATATTG+TGG - Chr2:16115296-16115315 None:intergenic 45.0%
GCTCTTGTAACATAGGGAGT+AGG + Chr2:16116431-16116450 MsG0280007488.01.T01:intron 45.0%
TAATGACAGCTGGACGTGAT+TGG + Chr2:16115653-16115672 MsG0280007488.01.T01:intron 45.0%
! ATGGTGCTAAACTACCGTGT+TGG + Chr2:16115428-16115447 MsG0280007488.01.T01:CDS 45.0%
! CTTCATTCAGCTGATGGATG+TGG + Chr2:16117147-16117166 MsG0280007488.01.T01:three_prime_UTR 45.0%
! GCTCAAATCAAGTCTAGGGT+TGG - Chr2:16116522-16116541 None:intergenic 45.0%
! TGGTGCTAAACTACCGTGTT+GGG + Chr2:16115429-16115448 MsG0280007488.01.T01:CDS 45.0%
!! CGGCAATAGCCTTATCGTTT+AGG + Chr2:16115306-16115325 MsG0280007488.01.T01:intron 45.0%
ACTATAGGAAGGCTTGGAGG+GGG - Chr2:16115594-16115613 None:intergenic 50.0%
CGTGAAGCTGCTGATCATGA+TGG + Chr2:16115719-16115738 MsG0280007488.01.T01:CDS 50.0%
GAGTAGGGTGTGCTAACACA+AGG + Chr2:16116447-16116466 MsG0280007488.01.T01:intron 50.0%
GCAGCACTATGTCAATGGAC+AGG + Chr2:16116878-16116897 MsG0280007488.01.T01:CDS 50.0%
GCAGCCCTCCCAAAAACAAA+GGG - Chr2:16115820-16115839 None:intergenic 50.0%
GGCTAGATGGCGATTACTTG+AGG + Chr2:16115762-16115781 MsG0280007488.01.T01:CDS 50.0%
GTCATAGTTGCAGGGCTAGA+TGG + Chr2:16115749-16115768 MsG0280007488.01.T01:CDS 50.0%
GTTACGGGAGGCAGAAAAGA+AGG - Chr2:16116994-16117013 None:intergenic 50.0%
TGCAGCCCTCCCAAAAACAA+AGG - Chr2:16115821-16115840 None:intergenic 50.0%
TGTCGGCAGCACTATGTCAA+TGG + Chr2:16116873-16116892 MsG0280007488.01.T01:CDS 50.0%
! CTTTTCTGCCTCCCGTAACT+TGG + Chr2:16116995-16117014 MsG0280007488.01.T01:three_prime_UTR 50.0%
! TGAGAGAGGTGACCTGCTTT+TGG + Chr2:16117187-16117206 MsG0280007488.01.T01:three_prime_UTR 50.0%
!! CACATGTCGTGCTGTTTCGA+CGG - Chr2:16116907-16116926 None:intergenic 50.0%
!! GAGAGAGGTGACCTGCTTTT+GGG + Chr2:16117188-16117207 MsG0280007488.01.T01:three_prime_UTR 50.0%
!! GTCTAGGGTTGGTGATTGCA+TGG - Chr2:16116511-16116530 None:intergenic 50.0%
ACATAGTGCTGCCGACACAC+TGG - Chr2:16116870-16116889 None:intergenic 55.0%
CGAAACAGCACGACATGTGG+TGG + Chr2:16116908-16116927 MsG0280007488.01.T01:CDS 55.0%
CGTCGAAACAGCACGACATG+TGG + Chr2:16116905-16116924 MsG0280007488.01.T01:CDS 55.0%
AGGAAGGCTTGGAGGGGGAA+GGG - Chr2:16115589-16115608 None:intergenic 60.0%
TAGGAAGGCTTGGAGGGGGA+AGG - Chr2:16115590-16115609 None:intergenic 60.0%
GAAGGCTTGGAGGGGGAAGG+GGG - Chr2:16115587-16115606 None:intergenic 65.0%
GGAAGGCTTGGAGGGGGAAG+GGG - Chr2:16115588-16115607 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 16115230 16117351 16115230 ID=MsG0280007488.01;Name=MsG0280007488.01
Chr2 mRNA 16115230 16117351 16115230 ID=MsG0280007488.01.T01;Parent=MsG0280007488.01;Name=MsG0280007488.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0.66|0.75|1|0.66|0.75|4|386|182
Chr2 exon 16115230 16115255 16115230 ID=MsG0280007488.01.T01:exon:1163;Parent=MsG0280007488.01.T01
Chr2 exon 16115363 16115507 16115363 ID=MsG0280007488.01.T01:exon:1164;Parent=MsG0280007488.01.T01
Chr2 exon 16115662 16115783 16115662 ID=MsG0280007488.01.T01:exon:1165;Parent=MsG0280007488.01.T01
Chr2 exon 16116710 16117351 16116710 ID=MsG0280007488.01.T01:exon:1166;Parent=MsG0280007488.01.T01
Chr2 CDS 16115230 16115255 16115230 ID=MsG0280007488.01.T01:cds;Parent=MsG0280007488.01.T01
Chr2 CDS 16115363 16115507 16115363 ID=MsG0280007488.01.T01:cds;Parent=MsG0280007488.01.T01
Chr2 CDS 16115662 16115783 16115662 ID=MsG0280007488.01.T01:cds;Parent=MsG0280007488.01.T01
Chr2 CDS 16116710 16116965 16116710 ID=MsG0280007488.01.T01:cds;Parent=MsG0280007488.01.T01
Chr2 three_prime_UTR 16116966 16117351 16116966 ID=MsG0280007488.01.T01:three_prime_utr;Parent=MsG0280007488.01.T01
Gene Sequence

>MsG0280007488.01.T01

ATGTTTGTGGAGCTTATGTTGGATATAAACGTGGCAATAATTAAATCAAGCAAGGATACAAGATATGGATTAGATTCAATTGTTACACATGATGGTGCTAAACTACCGTGTTGGGCACTATCAAATTTATCATCATTCAAGCAGAAGTTTGGAGTTGATGCTTATGATCAGCTGGACGTGATTGGCATTGATGAAGCTCAATTCTTTGACGACCTTTATGATTTCTGTCGTGAAGCTGCTGATCATGATGGAAAAACAGTCATAGTTGCAGGGCTAGATGGCGATTACTTGAGGAAGAGCTTTGGTTCTGTCCTTGACATAATTCCCCTTGCTGATTCTATAACTAAGTTAAATGCTCAATGTGAAATATGTGGGAAGAATGCTTATTTTACCCTGAGGAAGACACAAGATAAACAAGTTGAGTTGATCGGTGGAGTTGATGTCTACATGCCAGTGTGTCGGCAGCACTATGTCAATGGACAGGTTGCCGTCGAAACAGCACGACATGTGGTGGAATCTAAGAAGGTTGAATGCGGCTCCCATACATGA
Protein sequence

>MsG0280007488.01.T01

MFVELMLDINVAIIKSSKDTRYGLDSIVTHDGAKLPCWALSNLSSFKQKFGVDAYDQLDVIGIDEAQFFDDLYDFCREAADHDGKTVIVAGLDGDYLRKSFGSVLDIIPLADSITKLNAQCEICGKNAYFTLRKTQDKQVELIGGVDVYMPVCRQHYVNGQVAVETARHVVESKKVECGSHT*