AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003854.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003854.01.T01 MTR_1g070145 97.159 528 15 0 1 528 83 610 0.0 1052
MsG0180003854.01.T01 MTR_8g099745 28.715 498 330 6 9 492 65 551 2.07e-49 180
MsG0180003854.01.T01 MTR_8g027385 28.024 496 336 8 9 493 52 537 2.09e-44 166
MsG0180003854.01.T01 MTR_3g077950 26.547 501 352 6 9 500 253 746 9.69e-43 163
MsG0180003854.01.T01 MTR_3g077950 26.547 501 352 6 9 500 281 774 1.31e-42 163
MsG0180003854.01.T01 MTR_6g007110 27.879 495 324 7 16 492 190 669 2.27e-41 159
MsG0180003854.01.T01 MTR_4g106900 25.255 491 355 5 9 492 167 652 8.86e-41 157
MsG0180003854.01.T01 MTR_6g007110 27.974 454 294 7 16 451 190 628 6.75e-38 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003854.01.T01 AT2G31240 69.863 511 151 3 1 508 101 611 0.0 738
MsG0180003854.01.T01 AT3G27960 29.868 529 351 10 5 521 141 661 7.96e-54 193
MsG0180003854.01.T01 AT3G27960 29.868 529 351 10 5 521 141 661 7.96e-54 193
MsG0180003854.01.T01 AT3G27960 29.694 458 306 7 5 451 141 593 4.25e-49 179
MsG0180003854.01.T01 AT4G10840 28.872 523 337 9 11 509 78 589 6.75e-48 176
MsG0180003854.01.T01 AT4G10840 28.879 464 296 8 11 451 78 530 5.58e-44 164
MsG0180003854.01.T01 AT1G27500 26.793 474 334 5 32 497 161 629 3.91e-42 160
MsG0180003854.01.T01 AT1G27500 26.793 474 334 5 32 497 172 640 4.86e-42 160

Find 167 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATATCAGTCATATATTT+TGG 0.085468 1:-69245452 MsG0180003854.01.T01:three_prime_UTR
TGCTATGAGTTTGCAGTTAA+TGG 0.164879 1:-69248421 MsG0180003854.01.T01:CDS
GAAGCAGGCTATTCCTTATT+TGG 0.171283 1:-69247491 MsG0180003854.01.T01:CDS
TGGTTATATCTACAACAATT+TGG 0.200770 1:-69247416 MsG0180003854.01.T01:CDS
GGTTTGAAATGGGGTGTATA+AGG 0.212869 1:+69248727 None:intergenic
AGCTTTGGTCCCAAACATTT+TGG 0.213827 1:-69247442 MsG0180003854.01.T01:CDS
GCTGCGTGTGTATTATTATT+AGG 0.225487 1:+69245775 None:intergenic
GGTATCTTAATAAGGCTAAT+AGG 0.226066 1:-69248356 MsG0180003854.01.T01:CDS
TCGGAAGTGTTTGGAGATTA+AGG 0.232786 1:-69248205 MsG0180003854.01.T01:CDS
TAATAAGGCTAATAGGGTTT+TGG 0.236340 1:-69248349 MsG0180003854.01.T01:CDS
GAGGAAGATAGTGAGGAGTT+AGG 0.240509 1:-69248171 MsG0180003854.01.T01:CDS
ATGCTGCAGGTGTACTATTA+TGG 0.241724 1:+69245713 None:intergenic
GGCGCTTCCGTATTGTTTAA+AGG 0.255513 1:-69248094 MsG0180003854.01.T01:CDS
AATTATATAAGCTAGCTTAT+TGG 0.260877 1:+69245568 None:intergenic
GGTTATATCTACAACAATTT+GGG 0.261299 1:-69247415 MsG0180003854.01.T01:CDS
TGAGCATTTCTTGGTTGTTT+TGG 0.265982 1:+69248613 None:intergenic
CGAATGCTTTGAGCATTTCT+TGG 0.273852 1:+69248604 None:intergenic
GGGTGGTTGTTGTTGCTTAC+AGG 0.274076 1:-69247520 MsG0180003854.01.T01:CDS
AGGAGTTAGGGAAAGGGAAT+AGG 0.275680 1:-69248158 MsG0180003854.01.T01:CDS
TCAGCAGCACTTTCCAAATA+AGG 0.279505 1:+69247478 None:intergenic
AAAAGTTTGCAGACTGTAAA+AGG 0.282943 1:-69247747 MsG0180003854.01.T01:CDS
GGTTTAGCTGCATTGAAAAT+TGG 0.289450 1:-69248546 MsG0180003854.01.T01:CDS
GTCTTAATTATGGTTTAAAT+AGG 0.293303 1:-69248395 MsG0180003854.01.T01:CDS
TGTGTCAGGTTGGGAGTTAC+TGG 0.296347 1:+69245690 None:intergenic
AATAGGTTTAGTGATAGTTT+AGG 0.302645 1:-69248378 MsG0180003854.01.T01:CDS
TCAAAGGCTTATGGTGATAT+TGG 0.309390 1:-69247268 MsG0180003854.01.T01:CDS
AGGAAGATAGTGAGGAGTTA+GGG 0.310369 1:-69248170 MsG0180003854.01.T01:CDS
ATAGGTTTAGTGATAGTTTA+GGG 0.311847 1:-69248377 MsG0180003854.01.T01:CDS
TTAATGGGTAGTCTTAATTA+TGG 0.322455 1:-69248405 MsG0180003854.01.T01:CDS
ATAAGCTAGCTTATTGGTAT+TGG 0.325138 1:+69245574 None:intergenic
CAGAATCTTTCAAAGGCTTA+TGG 0.327198 1:-69247277 MsG0180003854.01.T01:CDS
CCTCCGAGTGCTGCTCTTGT+GGG 0.336592 1:+69247563 None:intergenic
TATGTCAGGTTGGGAGTTAT+TGG 0.341920 1:+69245750 None:intergenic
CTTCGCAAAACCCTCTTTCA+TGG 0.342158 1:+69248899 None:intergenic
AGGTGTTTAGAGATTTCTAT+TGG 0.345983 1:-69247727 MsG0180003854.01.T01:CDS
GTATCTTAATAAGGCTAATA+GGG 0.348444 1:-69248355 MsG0180003854.01.T01:CDS
AGGGTGGACATGGTTTGAAA+TGG 0.351871 1:+69248716 None:intergenic
GAGATACATACGAAGCGATT+AGG 0.352147 1:-69248066 MsG0180003854.01.T01:CDS
TATTTGACTGAATTGGTTGC+TGG 0.355631 1:-69245523 MsG0180003854.01.T01:three_prime_UTR
GGCGTTGGAGCAGAATGTTT+TGG 0.357994 1:-69247968 MsG0180003854.01.T01:CDS
AGAGAATCTTCGGAAGTGTT+TGG 0.370920 1:-69248214 MsG0180003854.01.T01:CDS
GCGAATATGATGATTGCTTT+GGG 0.375275 1:-69247883 MsG0180003854.01.T01:CDS
ATAACCAACTCCAAAATGTT+TGG 0.376664 1:+69247432 None:intergenic
CTTCTTGGGATTGTTTATAG+TGG 0.378113 1:-69248009 MsG0180003854.01.T01:CDS
GGGTGGACATGGTTTGAAAT+GGG 0.378368 1:+69248717 None:intergenic
GTGTTTGTGTTGATGATGTT+AGG 0.380305 1:-69248308 MsG0180003854.01.T01:CDS
GCGCATGATAGGAAGCTTCT+TGG 0.385283 1:-69248024 MsG0180003854.01.T01:CDS
TAGTTTAGGGTATCTTAATA+AGG 0.387240 1:-69248364 MsG0180003854.01.T01:CDS
GGAAATTTCATTCAATGAAA+AGG 0.398867 1:-69248574 MsG0180003854.01.T01:CDS
CTTCTTCTGCACTTGCTCCA+TGG 0.399591 1:+69245890 None:intergenic
AGATACATACGAAGCGATTA+GGG 0.403607 1:-69248065 MsG0180003854.01.T01:CDS
CCCTCCGAGTGCTGCTCTTG+TGG 0.404697 1:+69247562 None:intergenic
GTTTGAAATGGGGTGTATAA+GGG 0.406264 1:+69248728 None:intergenic
GCTATGAGTTTGCAGTTAAT+GGG 0.407040 1:-69248420 MsG0180003854.01.T01:CDS
CTGTTGAGGTTGCGCATGAT+AGG 0.407770 1:-69248035 MsG0180003854.01.T01:CDS
GGATGTCTGCTAAACTGTTC+GGG 0.410647 1:+69245654 None:intergenic
TGCGAATATGATGATTGCTT+TGG 0.410869 1:-69247884 MsG0180003854.01.T01:CDS
GGGGTGTATAAGGGTTTGTT+GGG 0.412378 1:+69248737 None:intergenic
AGCAGCAAGTTATAGATGCT+TGG 0.412778 1:-69245918 MsG0180003854.01.T01:CDS
AGCTCTTGTGCTTGTATCAA+TGG 0.413035 1:-69247791 MsG0180003854.01.T01:CDS
GGAGTTAGGGAAAGGGAATA+GGG 0.418677 1:-69248157 MsG0180003854.01.T01:CDS
TAACCAACTCCAAAATGTTT+GGG 0.419203 1:+69247433 None:intergenic
TGGGATTGTTTATAGTGGGA+TGG 0.423640 1:-69248004 MsG0180003854.01.T01:CDS
GGAAGTGTATCTGCAAGAAT+AGG 0.426493 1:-69247541 MsG0180003854.01.T01:CDS
GGGGAAAGCGTTATGTAATC+AGG 0.427739 1:-69247770 MsG0180003854.01.T01:CDS
CGCATGATAGGAAGCTTCTT+GGG 0.430357 1:-69248023 MsG0180003854.01.T01:CDS
GGGTGTATAAGGGTTTGTTG+GGG 0.431964 1:+69248738 None:intergenic
AGGATGTCTGCTAAACTGTT+CGG 0.436022 1:+69245653 None:intergenic
GCTCTTGTGCTTGTATCAAT+GGG 0.440321 1:-69247790 MsG0180003854.01.T01:CDS
GGTGTATAAGGGTTTGTTGG+GGG 0.442205 1:+69248739 None:intergenic
AAGAGGCGCTAGAGAATCTT+CGG 0.442376 1:-69248224 MsG0180003854.01.T01:CDS
GGTGTTTAGAGATTTCTATT+GGG 0.444294 1:-69247726 MsG0180003854.01.T01:CDS
GGAAAGTGAAGAGCCTTCAT+AGG 0.447539 1:+69245796 None:intergenic
GATTGACGTGGCGGTGTGTC+AGG 0.451015 1:+69245676 None:intergenic
GCAGCAAGTTATAGATGCTT+GGG 0.454415 1:-69245917 MsG0180003854.01.T01:CDS
TCATGCTGTGCAATTTGAGT+TGG 0.455338 1:-69248277 MsG0180003854.01.T01:CDS
TGGGGTGTATAAGGGTTTGT+TGG 0.456078 1:+69248736 None:intergenic
TGCTGCAGGTGTACTATTAT+GGG 0.459170 1:+69245714 None:intergenic
GAAGTGTATCTGCAAGAATA+GGG 0.459783 1:-69247540 MsG0180003854.01.T01:CDS
ATAGTGAGGAGTTAGGGAAA+GGG 0.461155 1:-69248164 MsG0180003854.01.T01:CDS
AACTGCAAACTCATAGCATA+AGG 0.469559 1:+69248426 None:intergenic
CAAGAAATGCTCAAAGCATT+CGG 0.480287 1:-69248603 MsG0180003854.01.T01:exon
GTCAGCAGCGCAGATGTTTG+CGG 0.481206 1:-69247362 MsG0180003854.01.T01:CDS
TTCTTGGGATTGTTTATAGT+GGG 0.486322 1:-69248008 MsG0180003854.01.T01:CDS
AGAAACCTCCATGATATCCT+TGG 0.489502 1:+69247336 None:intergenic
TCATTCAATGAAAAGGAGCT+TGG 0.491295 1:-69248567 MsG0180003854.01.T01:CDS
GCTAATGTTAAGACGGCGAT+GGG 0.491334 1:-69248255 MsG0180003854.01.T01:CDS
TTTGGGTAGGTTAGAGAATG+AGG 0.492492 1:-69248331 MsG0180003854.01.T01:CDS
GAACGGTTGAAAGAGAGCTT+TGG 0.492632 1:-69247457 MsG0180003854.01.T01:CDS
GTTGTTGTTGCTTACAGGTA+AGG 0.496912 1:-69247515 MsG0180003854.01.T01:CDS
TGCAAATGAGGTTCCTATGA+AGG 0.499756 1:-69245809 MsG0180003854.01.T01:CDS
ACGAGCAAGATGAGAGAAGA+AGG 0.502527 1:+69248816 None:intergenic
GAAGAATTGGAATCTCAGTT+CGG 0.503248 1:-69247932 MsG0180003854.01.T01:CDS
GATGTAACGGTATGTCAGGT+TGG 0.504036 1:+69245740 None:intergenic
AAAATATGCTGTTGTGAAAG+AGG 0.504715 1:+69245633 None:intergenic
TTGATGAATGCCTATGGTAC+TGG 0.507101 1:-69245612 MsG0180003854.01.T01:three_prime_UTR
GATAGTGAGGAGTTAGGGAA+AGG 0.510103 1:-69248165 MsG0180003854.01.T01:CDS
CTGCGATTTCGTTGCTGAAG+AGG 0.511189 1:-69247609 MsG0180003854.01.T01:CDS
ATGTAACGGTATGTCAGGTT+GGG 0.511251 1:+69245741 None:intergenic
TTGGGTAGGTTAGAGAATGA+GGG 0.511672 1:-69248330 MsG0180003854.01.T01:CDS
ACGTGGCGGTGTGTCAGGTT+GGG 0.514066 1:+69245681 None:intergenic
GCTCAAAGCATTCGGTGAGA+TGG 0.514737 1:-69248595 MsG0180003854.01.T01:CDS
GATATCATGGAGGTTTCTCT+TGG 0.517703 1:-69247331 MsG0180003854.01.T01:CDS
GTTCATAGTTTCATATAGCA+TGG 0.522310 1:+69247642 None:intergenic
GATTGTTTATAGTGGGATGG+AGG 0.522341 1:-69248001 MsG0180003854.01.T01:CDS
GACGTGGCGGTGTGTCAGGT+TGG 0.523342 1:+69245680 None:intergenic
TGCGATTTCGTTGCTGAAGA+GGG 0.530007 1:-69247608 MsG0180003854.01.T01:CDS
TGCGGTAGCCAAGGATATCA+TGG 0.531067 1:-69247344 MsG0180003854.01.T01:CDS
CCGCGGTGTCTCTGCAAATG+AGG 0.535152 1:-69245821 MsG0180003854.01.T01:CDS
TGTCTAGGAGAGATTTGAGT+GGG 0.536028 1:+69248683 None:intergenic
GAAAGGGAATAGGGATTTAG+CGG 0.537665 1:-69248148 MsG0180003854.01.T01:CDS
GCTTACAGGTAAGGTGAAGC+AGG 0.537806 1:-69247506 MsG0180003854.01.T01:CDS
GGAAGTTTCTGAGGCATACT+CGG 0.541766 1:-69247671 MsG0180003854.01.T01:CDS
TCACATTACCTCCATGAAAG+AGG 0.542106 1:-69248910 MsG0180003854.01.T01:five_prime_UTR
AAACTTTATACCAGTACCAT+AGG 0.543632 1:+69245602 None:intergenic
GGTGGACATGGTTTGAAATG+GGG 0.545688 1:+69248718 None:intergenic
CACATTACCTCCATGAAAGA+GGG 0.546356 1:-69248909 MsG0180003854.01.T01:five_prime_UTR
CTATTATGGGATTGATGTAA+CGG 0.547602 1:+69245727 None:intergenic
GAAACTCAATTGCAAGGGAA+TGG 0.548823 1:+69245941 None:intergenic
CCACAAGAGCAGCACTCGGA+GGG 0.552886 1:-69247562 MsG0180003854.01.T01:CDS
GGAGGATCATGAGAAGGCGT+TGG 0.552931 1:-69247983 MsG0180003854.01.T01:CDS
TGAGTTGGCTAATGTTAAGA+CGG 0.567694 1:-69248262 MsG0180003854.01.T01:CDS
GATTGATGTAACGGTATGTC+AGG 0.570067 1:+69245736 None:intergenic
GGCGATGGGGAGGAGAGAAG+AGG 0.570707 1:-69248241 MsG0180003854.01.T01:CDS
TCTAACGCCTTTAAACAATA+CGG 0.571467 1:+69248087 None:intergenic
AGCATGTCAGAATCTTTCAA+AGG 0.573306 1:-69247284 MsG0180003854.01.T01:CDS
GGCTAATGTTAAGACGGCGA+TGG 0.573411 1:-69248256 MsG0180003854.01.T01:CDS
GGGAGATACGATGAAGCTGT+TGG 0.573991 1:-69247862 MsG0180003854.01.T01:CDS
GCTGCTGAAACTCAATTGCA+AGG 0.574173 1:+69245935 None:intergenic
AATTGCACAGCATGAAGCAC+AGG 0.576090 1:+69248285 None:intergenic
GTTATATCTACAACAATTTG+GGG 0.576788 1:-69247414 MsG0180003854.01.T01:CDS
AGGCTTATGGTGATATTGGA+AGG 0.580409 1:-69247264 MsG0180003854.01.T01:intron
CTGCTGAAACTCAATTGCAA+GGG 0.582844 1:+69245936 None:intergenic
TGTGATTTCAACAACGTAGT+CGG 0.585489 1:+69248928 None:intergenic
ATTAGGGATGAATTCTGTTG+AGG 0.587352 1:-69248049 MsG0180003854.01.T01:CDS
CTCATTTGCAGAGACACCGC+GGG 0.591950 1:+69245822 None:intergenic
TACACCGGTGGAAGTTTCTG+AGG 0.595722 1:-69247680 MsG0180003854.01.T01:CDS
ATGTTAAGACGGCGATGGGG+AGG 0.595931 1:-69248251 MsG0180003854.01.T01:CDS
GCAGATGTTTGCGGTAGCCA+AGG 0.596662 1:-69247353 MsG0180003854.01.T01:CDS
TGGGAGTTACTGGATGCTGC+AGG 0.602801 1:+69245700 None:intergenic
AACATCTGCGCTGCTGACTG+AGG 0.607323 1:+69247367 None:intergenic
GCTCCCACAAGAGCAGCACT+CGG 0.608859 1:-69247566 MsG0180003854.01.T01:CDS
ATAGATGCTTGGGAAAGCCA+TGG 0.619820 1:-69245907 MsG0180003854.01.T01:CDS
ATTTGGAAAGTGCTGCTGAA+CGG 0.624374 1:-69247474 MsG0180003854.01.T01:CDS
TCGCGGAGAGGAGAGAGAGA+AGG 0.627138 1:+69248784 None:intergenic
TAAACTGTTCGGGATTGACG+TGG 0.629660 1:+69245664 None:intergenic
TGGGATGGAGGATCATGAGA+AGG 0.633696 1:-69247989 MsG0180003854.01.T01:CDS
GAAGCTTGATCGTGAAGGTG+AGG 0.637522 1:-69248520 MsG0180003854.01.T01:CDS
TTTAGCGGAAGCTTATGTTG+CGG 0.637589 1:-69248133 MsG0180003854.01.T01:CDS
CCCACAAGAGCAGCACTCGG+AGG 0.640444 1:-69247563 MsG0180003854.01.T01:CDS
AAGAGAACAGATTACACCGG+TGG 0.642489 1:-69247692 MsG0180003854.01.T01:CDS
CGAATATGATGATTGCTTTG+GGG 0.644617 1:-69247882 MsG0180003854.01.T01:CDS
CGCAAAACCCTCTTTCATGG+AGG 0.647660 1:+69248902 None:intergenic
TCAATTGTATCTGCATGATG+TGG 0.648031 1:+69247307 None:intergenic
ACTGTTCGGGATTGACGTGG+CGG 0.661175 1:+69245667 None:intergenic
TTGTCTAGGAGAGATTTGAG+TGG 0.661188 1:+69248682 None:intergenic
TTGATGGATGCATCGCGGAG+AGG 0.665367 1:+69248772 None:intergenic
TATGCCTCAGAAACTTCCAC+CGG 0.674657 1:+69247676 None:intergenic
GTGTATCTGCAAGAATAGGG+TGG 0.702061 1:-69247537 MsG0180003854.01.T01:CDS
CCTCATTTGCAGAGACACCG+CGG 0.706770 1:+69245821 None:intergenic
CTCTTGTGCTTGTATCAATG+GGG 0.708946 1:-69247789 MsG0180003854.01.T01:CDS
TAAAAGAGAACAGATTACAC+CGG 0.715171 1:-69247695 MsG0180003854.01.T01:CDS
TTATATCTACAACAATTTGG+GGG 0.722117 1:-69247413 MsG0180003854.01.T01:CDS
AGAGGTTGATGGATGCATCG+CGG 0.729708 1:+69248767 None:intergenic
CTAATGTTAAGACGGCGATG+GGG 0.738436 1:-69248254 MsG0180003854.01.T01:CDS
GGTAGCCAAGGATATCATGG+AGG 0.746203 1:-69247341 MsG0180003854.01.T01:CDS
GGTCTGAAGCTTGATCGTGA+AGG 0.746730 1:-69248525 MsG0180003854.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATTTCATTATTTAGAT+CGG - Chr1:69247991-69248010 MsG0180003854.01.T01:CDS 15.0%
!! CTTGAATTACAAAAATATTT+AGG - Chr1:69248118-69248137 MsG0180003854.01.T01:CDS 15.0%
!! TTACAAAAATATTTAGGAAT+CGG - Chr1:69248124-69248143 MsG0180003854.01.T01:CDS 15.0%
!! AATTCAAGTACATACTATAT+AGG + Chr1:69248106-69248125 None:intergenic 20.0%
!! GTCTTAATTATGGTTTAAAT+AGG - Chr1:69245920-69245939 MsG0180003854.01.T01:CDS 20.0%
!!! AACAATTATTTTGAGACTTA+AGG - Chr1:69247231-69247250 MsG0180003854.01.T01:intron 20.0%
!!! AATTATATAAGCTAGCTTAT+TGG + Chr1:69248750-69248769 None:intergenic 20.0%
!!! ATAAAACTTAGTTTGATAGA+TGG + Chr1:69247690-69247709 None:intergenic 20.0%
!!! CAGTTTAAACATTTAACTTT+TGG - Chr1:69247171-69247190 MsG0180003854.01.T01:intron 20.0%
!!! CTATATCAGTCATATATTTT+GGG - Chr1:69248864-69248883 MsG0180003854.01.T01:five_prime_UTR 20.0%
!!! TATATCAGTCATATATTTTG+GGG - Chr1:69248865-69248884 MsG0180003854.01.T01:five_prime_UTR 20.0%
!!! TTAGTTTTATTTGACTGAAT+TGG - Chr1:69248785-69248804 MsG0180003854.01.T01:five_prime_UTR 20.0%
!!! TTCATGTTTTCCTAAAATAT+TGG - Chr1:69248343-69248362 MsG0180003854.01.T01:CDS 20.0%
! AAAAATATTTAGGAATCGGA+AGG - Chr1:69248128-69248147 MsG0180003854.01.T01:CDS 25.0%
! AATAGGTTTAGTGATAGTTT+AGG - Chr1:69245937-69245956 MsG0180003854.01.T01:CDS 25.0%
! ATAGGTTTAGTGATAGTTTA+GGG - Chr1:69245938-69245957 MsG0180003854.01.T01:CDS 25.0%
! CTGCTTTCAAAAGAAAAATT+AGG - Chr1:69247357-69247376 MsG0180003854.01.T01:CDS 25.0%
! GGAAATTTCATTCAATGAAA+AGG - Chr1:69245741-69245760 MsG0180003854.01.T01:CDS 25.0%
! GGTTATATCTACAACAATTT+GGG - Chr1:69246900-69246919 MsG0180003854.01.T01:intron 25.0%
! GTATCTTAATAAGGCTAATA+GGG - Chr1:69245960-69245979 MsG0180003854.01.T01:intron 25.0%
! GTTATATCTACAACAATTTG+GGG - Chr1:69246901-69246920 MsG0180003854.01.T01:intron 25.0%
! TGGTTATATCTACAACAATT+TGG - Chr1:69246899-69246918 MsG0180003854.01.T01:intron 25.0%
! TTATATCTACAACAATTTGG+GGG - Chr1:69246902-69246921 MsG0180003854.01.T01:intron 25.0%
! TTTCATATAAGTAGCTATGT+TGG - Chr1:69247476-69247495 MsG0180003854.01.T01:CDS 25.0%
!! AACTGTATATGTTTTTCCAA+CGG - Chr1:69248315-69248334 MsG0180003854.01.T01:CDS 25.0%
!! GCTATATCAGTCATATATTT+TGG - Chr1:69248863-69248882 MsG0180003854.01.T01:five_prime_UTR 25.0%
!! TAGTTTAGGGTATCTTAATA+AGG - Chr1:69245951-69245970 MsG0180003854.01.T01:intron 25.0%
!! TTAATGGGTAGTCTTAATTA+TGG - Chr1:69245910-69245929 MsG0180003854.01.T01:CDS 25.0%
!!! ATATCAGTCATATATTTTGG+GGG - Chr1:69248866-69248885 MsG0180003854.01.T01:five_prime_UTR 25.0%
!!! ATCAATGTTTTGCTTGTTTT+TGG - Chr1:69247956-69247975 MsG0180003854.01.T01:CDS 25.0%
!!! ATTATTTTGAGACTTAAGGA+TGG - Chr1:69247235-69247254 MsG0180003854.01.T01:intron 25.0%
AAAAGTTTGCAGACTGTAAA+AGG - Chr1:69246568-69246587 MsG0180003854.01.T01:intron 30.0%
AAAATATGCTGTTGTGAAAG+AGG + Chr1:69248685-69248704 None:intergenic 30.0%
AAACCAAGAGAAACAATATC+AGG + Chr1:69247108-69247127 None:intergenic 30.0%
AAACTTTATACCAGTACCAT+AGG + Chr1:69248716-69248735 None:intergenic 30.0%
AACCAAGAGAAACAATATCA+GGG + Chr1:69247107-69247126 None:intergenic 30.0%
AAGAAAAATTAGGCTGTGTT+TGG - Chr1:69247367-69247386 MsG0180003854.01.T01:CDS 30.0%
AAGCACATTATCCAAAAAAG+GGG + Chr1:69248256-69248275 None:intergenic 30.0%
AGGTGTTTAGAGATTTCTAT+TGG - Chr1:69246588-69246607 MsG0180003854.01.T01:intron 30.0%
ATAACCAACTCCAAAATGTT+TGG + Chr1:69246886-69246905 None:intergenic 30.0%
ATCTTGAGTACAAAGAGTTA+TGG - Chr1:69247880-69247899 MsG0180003854.01.T01:CDS 30.0%
CTATTATGGGATTGATGTAA+CGG + Chr1:69248591-69248610 None:intergenic 30.0%
GAAGCACATTATCCAAAAAA+GGG + Chr1:69248257-69248276 None:intergenic 30.0%
GGTATCTTAATAAGGCTAAT+AGG - Chr1:69245959-69245978 MsG0180003854.01.T01:intron 30.0%
GGTGTTTAGAGATTTCTATT+GGG - Chr1:69246589-69246608 MsG0180003854.01.T01:intron 30.0%
GTTCATAGTTTCATATAGCA+TGG + Chr1:69246676-69246695 None:intergenic 30.0%
TAAAAGAGAACAGATTACAC+CGG - Chr1:69246620-69246639 MsG0180003854.01.T01:intron 30.0%
TAACCAACTCCAAAATGTTT+GGG + Chr1:69246885-69246904 None:intergenic 30.0%
TCTAACGCCTTTAAACAATA+CGG + Chr1:69246231-69246250 None:intergenic 30.0%
TCTCAAAATAATTGTTCCAC+TGG + Chr1:69247227-69247246 None:intergenic 30.0%
TTATGAGCATAGCATGAATA+AGG + Chr1:69247628-69247647 None:intergenic 30.0%
TTCTTGGGATTGTTTATAGT+GGG - Chr1:69246307-69246326 MsG0180003854.01.T01:intron 30.0%
! AATAAGGCTAATAGGGTTTT+GGG - Chr1:69245967-69245986 MsG0180003854.01.T01:intron 30.0%
! AGAAGCACATTATCCAAAAA+AGG + Chr1:69248258-69248277 None:intergenic 30.0%
! AGAATTCAAGAGTTTTCTCA+TGG + Chr1:69245475-69245494 None:intergenic 30.0%
! ATAAGCTAGCTTATTGGTAT+TGG + Chr1:69248744-69248763 None:intergenic 30.0%
! CAGATTTTACAGATTTGTGT+AGG - Chr1:69248819-69248838 MsG0180003854.01.T01:five_prime_UTR 30.0%
! GAAAACATGAATTTTTCCGT+TGG + Chr1:69248334-69248353 None:intergenic 30.0%
! TAATAAGGCTAATAGGGTTT+TGG - Chr1:69245966-69245985 MsG0180003854.01.T01:intron 30.0%
!! ATTCTGCAAACAATTGGTTT+TGG - Chr1:69247132-69247151 MsG0180003854.01.T01:intron 30.0%
!! TTGTTGATTCTGCAAACAAT+TGG - Chr1:69247126-69247145 MsG0180003854.01.T01:intron 30.0%
!!! CATATTTTGATGAATGCCTA+TGG - Chr1:69248697-69248716 MsG0180003854.01.T01:five_prime_UTR 30.0%
!!! TGTTGCGGTTTTGAATTTTA+AGG - Chr1:69246197-69246216 MsG0180003854.01.T01:intron 30.0%
!!! TTCTGCAAACAATTGGTTTT+GGG - Chr1:69247133-69247152 MsG0180003854.01.T01:intron 30.0%
AACTATATGAGAGGTAGACA+TGG + Chr1:69247663-69247682 None:intergenic 35.0%
AACTGCAAACTCATAGCATA+AGG + Chr1:69245892-69245911 None:intergenic 35.0%
AATCTGAATCCCACACTATT+AGG + Chr1:69247204-69247223 None:intergenic 35.0%
AGATACATACGAAGCGATTA+GGG - Chr1:69246250-69246269 MsG0180003854.01.T01:intron 35.0%
AGCATGTCAGAATCTTTCAA+AGG - Chr1:69247031-69247050 MsG0180003854.01.T01:intron 35.0%
AGCTATTCCATGTGCAATTA+TGG + Chr1:69247913-69247932 None:intergenic 35.0%
AGGTAGACATGGAAACTAAA+AGG + Chr1:69247652-69247671 None:intergenic 35.0%
ATATGCAATTGAGCTCGAAA+TGG + Chr1:69248018-69248037 None:intergenic 35.0%
ATTAGGGATGAATTCTGTTG+AGG - Chr1:69246266-69246285 MsG0180003854.01.T01:intron 35.0%
CAATTAAAGAAAAAAGCCCG+CGG - Chr1:69248477-69248496 MsG0180003854.01.T01:CDS 35.0%
CAGAATCTTTCAAAGGCTTA+TGG - Chr1:69247038-69247057 MsG0180003854.01.T01:intron 35.0%
CGAATATGATGATTGCTTTG+GGG - Chr1:69246433-69246452 MsG0180003854.01.T01:intron 35.0%
CTGACATAAAATAGAGTGCA+GGG - Chr1:69247290-69247309 MsG0180003854.01.T01:CDS 35.0%
CTTCTTGGGATTGTTTATAG+TGG - Chr1:69246306-69246325 MsG0180003854.01.T01:intron 35.0%
GAAGAATTGGAATCTCAGTT+CGG - Chr1:69246383-69246402 MsG0180003854.01.T01:intron 35.0%
GAAGTGTATCTGCAAGAATA+GGG - Chr1:69246775-69246794 MsG0180003854.01.T01:intron 35.0%
GATGGAAAGAACTATATGAG+AGG + Chr1:69247672-69247691 None:intergenic 35.0%
GCGAATATGATGATTGCTTT+GGG - Chr1:69246432-69246451 MsG0180003854.01.T01:intron 35.0%
GCTATGAGTTTGCAGTTAAT+GGG - Chr1:69245895-69245914 MsG0180003854.01.T01:CDS 35.0%
GCTATTCCATGTGCAATTAT+GGG + Chr1:69247912-69247931 None:intergenic 35.0%
GCTGCGTGTGTATTATTATT+AGG + Chr1:69248543-69248562 None:intergenic 35.0%
GGACATATACCTAATAGTGT+GGG - Chr1:69247192-69247211 MsG0180003854.01.T01:intron 35.0%
GGTTTAGCTGCATTGAAAAT+TGG - Chr1:69245769-69245788 MsG0180003854.01.T01:CDS 35.0%
TAAGAACTAGCAACAGTGTT+TGG + Chr1:69247566-69247585 None:intergenic 35.0%
TATGGTGATATTGGAAGGTA+TGG - Chr1:69247056-69247075 MsG0180003854.01.T01:intron 35.0%
TATTTGACTGAATTGGTTGC+TGG - Chr1:69248792-69248811 MsG0180003854.01.T01:five_prime_UTR 35.0%
TCAAAGGCTTATGGTGATAT+TGG - Chr1:69247047-69247066 MsG0180003854.01.T01:intron 35.0%
TCAAATAAGCCATTCCAAAC+AGG - Chr1:69247601-69247620 MsG0180003854.01.T01:CDS 35.0%
TCAATTGTATCTGCATGATG+TGG + Chr1:69247011-69247030 None:intergenic 35.0%
TCATTCAATGAAAAGGAGCT+TGG - Chr1:69245748-69245767 MsG0180003854.01.T01:CDS 35.0%
TCTGACATAAAATAGAGTGC+AGG - Chr1:69247289-69247308 MsG0180003854.01.T01:CDS 35.0%
TGCGAATATGATGATTGCTT+TGG - Chr1:69246431-69246450 MsG0180003854.01.T01:intron 35.0%
TGCTATGAGTTTGCAGTTAA+TGG - Chr1:69245894-69245913 MsG0180003854.01.T01:CDS 35.0%
TGGACATATACCTAATAGTG+TGG - Chr1:69247191-69247210 MsG0180003854.01.T01:intron 35.0%
TGTGATTTCAACAACGTAGT+CGG + Chr1:69245390-69245409 None:intergenic 35.0%
! AATTTAGACTTGGTTGTTCC+CGG - Chr1:69248154-69248173 MsG0180003854.01.T01:CDS 35.0%
! CAAGAAATGCTCAAAGCATT+CGG - Chr1:69245712-69245731 MsG0180003854.01.T01:CDS 35.0%
! CGGAAGGTATAATTTAGACT+TGG - Chr1:69248144-69248163 MsG0180003854.01.T01:CDS 35.0%
! GATTAAGGAGATGACTTTTG+AGG - Chr1:69246125-69246144 MsG0180003854.01.T01:intron 35.0%
! GGCTGCAATTCCAATATTTT+AGG + Chr1:69248356-69248375 None:intergenic 35.0%
! GTTTGAAATGGGGTGTATAA+GGG + Chr1:69245590-69245609 None:intergenic 35.0%
! TGAGCATTTCTTGGTTGTTT+TGG + Chr1:69245705-69245724 None:intergenic 35.0%
! TGAGTTGGCTAATGTTAAGA+CGG - Chr1:69246053-69246072 MsG0180003854.01.T01:intron 35.0%
! TGTTTGGAATGGCTTATTTG+AGG + Chr1:69247602-69247621 None:intergenic 35.0%
! TTCCCTGATATTGTTTCTCT+TGG - Chr1:69247102-69247121 MsG0180003854.01.T01:intron 35.0%
!! CGCAGAAGATTTTGAAGAAT+TGG - Chr1:69246370-69246389 MsG0180003854.01.T01:intron 35.0%
!! GCAAATTCAAGAGCTTTTTC+AGG + Chr1:69245823-69245842 None:intergenic 35.0%
!! GTGTTTGTGTTGATGATGTT+AGG - Chr1:69246007-69246026 MsG0180003854.01.T01:intron 35.0%
!! TTTGCTTTGGCTTCGATTTT+GGG + Chr1:69245448-69245467 None:intergenic 35.0%
!! TTTTGCTTTGGCTTCGATTT+TGG + Chr1:69245449-69245468 None:intergenic 35.0%
!!! TGCGGTTTTGAATTTTAAGG+AGG - Chr1:69246200-69246219 MsG0180003854.01.T01:intron 35.0%
ACACCAAATCAGAACTCTCT+TGG + Chr1:69247766-69247785 None:intergenic 40.0%
AGAAACCTCCATGATATCCT+TGG + Chr1:69246982-69247001 None:intergenic 40.0%
AGCAGCAAGTTATAGATGCT+TGG - Chr1:69248397-69248416 MsG0180003854.01.T01:CDS 40.0%
AGCATGAATAAGGACCTGTT+TGG + Chr1:69247618-69247637 None:intergenic 40.0%
AGCTCTTGTGCTTGTATCAA+TGG - Chr1:69246524-69246543 MsG0180003854.01.T01:intron 40.0%
AGGAAGATAGTGAGGAGTTA+GGG - Chr1:69246145-69246164 MsG0180003854.01.T01:intron 40.0%
AGGATGTCTGCTAAACTGTT+CGG + Chr1:69248665-69248684 None:intergenic 40.0%
AGGCTTATGGTGATATTGGA+AGG - Chr1:69247051-69247070 MsG0180003854.01.T01:intron 40.0%
ATAGTGAGGAGTTAGGGAAA+GGG - Chr1:69246151-69246170 MsG0180003854.01.T01:intron 40.0%
ATGCTGCAGGTGTACTATTA+TGG + Chr1:69248605-69248624 None:intergenic 40.0%
ATGTAACGGTATGTCAGGTT+GGG + Chr1:69248577-69248596 None:intergenic 40.0%
CACATTACCTCCATGAAAGA+GGG - Chr1:69245406-69245425 MsG0180003854.01.T01:three_prime_UTR 40.0%
CTCTTGTGCTTGTATCAATG+GGG - Chr1:69246526-69246545 MsG0180003854.01.T01:intron 40.0%
CTGCTGAAACTCAATTGCAA+GGG + Chr1:69248382-69248401 None:intergenic 40.0%
GAAACTCAATTGCAAGGGAA+TGG + Chr1:69248377-69248396 None:intergenic 40.0%
GAAAGGGAATAGGGATTTAG+CGG - Chr1:69246167-69246186 MsG0180003854.01.T01:intron 40.0%
GAAGCAGGCTATTCCTTATT+TGG - Chr1:69246824-69246843 MsG0180003854.01.T01:intron 40.0%
GAATAAGGACCTGTTTGGAA+TGG + Chr1:69247613-69247632 None:intergenic 40.0%
GAGATACATACGAAGCGATT+AGG - Chr1:69246249-69246268 MsG0180003854.01.T01:intron 40.0%
GAGCACAGAAGAGAATATAG+TGG + Chr1:69247742-69247761 None:intergenic 40.0%
GATATCATGGAGGTTTCTCT+TGG - Chr1:69246984-69247003 MsG0180003854.01.T01:intron 40.0%
GATTGATGTAACGGTATGTC+AGG + Chr1:69248582-69248601 None:intergenic 40.0%
GCAGCAAGTTATAGATGCTT+GGG - Chr1:69248398-69248417 MsG0180003854.01.T01:CDS 40.0%
GCTCTTGTGCTTGTATCAAT+GGG - Chr1:69246525-69246544 MsG0180003854.01.T01:intron 40.0%
TCAACGTAACATACTGTGAG+TGG - Chr1:69248209-69248228 MsG0180003854.01.T01:CDS 40.0%
TCACATTACCTCCATGAAAG+AGG - Chr1:69245405-69245424 MsG0180003854.01.T01:three_prime_UTR 40.0%
TCAGCAGCACTTTCCAAATA+AGG + Chr1:69246840-69246859 None:intergenic 40.0%
TCATGCTGTGCAATTTGAGT+TGG - Chr1:69246038-69246057 MsG0180003854.01.T01:intron 40.0%
TGCAAATGAGGTTCCTATGA+AGG - Chr1:69248506-69248525 MsG0180003854.01.T01:CDS 40.0%
TGCTGCAGGTGTACTATTAT+GGG + Chr1:69248604-69248623 None:intergenic 40.0%
TGTCTAGGAGAGATTTGAGT+GGG + Chr1:69245635-69245654 None:intergenic 40.0%
TTGATGAATGCCTATGGTAC+TGG - Chr1:69248703-69248722 MsG0180003854.01.T01:five_prime_UTR 40.0%
TTGGGTAGGTTAGAGAATGA+GGG - Chr1:69245985-69246004 MsG0180003854.01.T01:intron 40.0%
TTGTCTAGGAGAGATTTGAG+TGG + Chr1:69245636-69245655 None:intergenic 40.0%
TTTAGCGGAAGCTTATGTTG+CGG - Chr1:69246182-69246201 MsG0180003854.01.T01:intron 40.0%
TTTGGGTAGGTTAGAGAATG+AGG - Chr1:69245984-69246003 MsG0180003854.01.T01:intron 40.0%
! CGAATGCTTTGAGCATTTCT+TGG + Chr1:69245714-69245733 None:intergenic 40.0%
! GATTGTTTATAGTGGGATGG+AGG - Chr1:69246314-69246333 MsG0180003854.01.T01:intron 40.0%
! GGAAGTGTATCTGCAAGAAT+AGG - Chr1:69246774-69246793 MsG0180003854.01.T01:intron 40.0%
! GGTTTGAAATGGGGTGTATA+AGG + Chr1:69245591-69245610 None:intergenic 40.0%
! GTTGTTGTTGCTTACAGGTA+AGG - Chr1:69246800-69246819 MsG0180003854.01.T01:intron 40.0%
! TCACCAAGAGAGTTCTGATT+TGG - Chr1:69247760-69247779 MsG0180003854.01.T01:CDS 40.0%
! TCGATGATTTTGCGTTGTCT+AGG + Chr1:69245650-69245669 None:intergenic 40.0%
! TGGGATTGTTTATAGTGGGA+TGG - Chr1:69246311-69246330 MsG0180003854.01.T01:intron 40.0%
! TTCTCATGGCGATTTTGCTT+TGG + Chr1:69245461-69245480 None:intergenic 40.0%
!! AGAGAATCTTCGGAAGTGTT+TGG - Chr1:69246101-69246120 MsG0180003854.01.T01:intron 40.0%
!! AGCTTTGGTCCCAAACATTT+TGG - Chr1:69246873-69246892 MsG0180003854.01.T01:intron 40.0%
!! ATTTGGAAAGTGCTGCTGAA+CGG - Chr1:69246841-69246860 MsG0180003854.01.T01:intron 40.0%
!! GACTTTTGAGGAAGATAGTG+AGG - Chr1:69246137-69246156 MsG0180003854.01.T01:intron 40.0%
!! GAGAGATTTGAGTGGGTTTT+TGG + Chr1:69245628-69245647 None:intergenic 40.0%
!! TATGTCAGGTTGGGAGTTAT+TGG + Chr1:69248568-69248587 None:intergenic 40.0%
!! TCGGAAGTGTTTGGAGATTA+AGG - Chr1:69246110-69246129 MsG0180003854.01.T01:intron 40.0%
!! TTGAGTGGGTTTTTGGATGA+GGG + Chr1:69245621-69245640 None:intergenic 40.0%
!! TTTGAGTGGGTTTTTGGATG+AGG + Chr1:69245622-69245641 None:intergenic 40.0%
!!! CTTGTTTCTGTCCCCTTTTT+TGG - Chr1:69248242-69248261 MsG0180003854.01.T01:CDS 40.0%
!!! GCATTTCTTGGTTGTTTTGG+CGG + Chr1:69245702-69245721 None:intergenic 40.0%
AAGAGAACAGATTACACCGG+TGG - Chr1:69246623-69246642 MsG0180003854.01.T01:intron 45.0%
AATTGCACAGCATGAAGCAC+AGG + Chr1:69246033-69246052 None:intergenic 45.0%
ACGAGCAAGATGAGAGAAGA+AGG + Chr1:69245502-69245521 None:intergenic 45.0%
AGGAGTTAGGGAAAGGGAAT+AGG - Chr1:69246157-69246176 MsG0180003854.01.T01:intron 45.0%
AGGGTGGACATGGTTTGAAA+TGG + Chr1:69245602-69245621 None:intergenic 45.0%
ATAGATGCTTGGGAAAGCCA+TGG - Chr1:69248408-69248427 MsG0180003854.01.T01:CDS 45.0%
CGCATGATAGGAAGCTTCTT+GGG - Chr1:69246292-69246311 MsG0180003854.01.T01:intron 45.0%
CTAATGTTAAGACGGCGATG+GGG - Chr1:69246061-69246080 MsG0180003854.01.T01:intron 45.0%
CTTCGCAAAACCCTCTTTCA+TGG + Chr1:69245419-69245438 None:intergenic 45.0%
CTTTACGAGAACCTCTGAAC+CGG + Chr1:69248176-69248195 None:intergenic 45.0%
GAACGGTTGAAAGAGAGCTT+TGG - Chr1:69246858-69246877 MsG0180003854.01.T01:intron 45.0%
GAGGAAGATAGTGAGGAGTT+AGG - Chr1:69246144-69246163 MsG0180003854.01.T01:intron 45.0%
GATAGTGAGGAGTTAGGGAA+AGG - Chr1:69246150-69246169 MsG0180003854.01.T01:intron 45.0%
GATGTAACGGTATGTCAGGT+TGG + Chr1:69248578-69248597 None:intergenic 45.0%
GCTAATGTTAAGACGGCGAT+GGG - Chr1:69246060-69246079 MsG0180003854.01.T01:intron 45.0%
GCTGCTGAAACTCAATTGCA+AGG + Chr1:69248383-69248402 None:intergenic 45.0%
GGAAAGTGAAGAGCCTTCAT+AGG + Chr1:69248522-69248541 None:intergenic 45.0%
GGAGTTAGGGAAAGGGAATA+GGG - Chr1:69246158-69246177 MsG0180003854.01.T01:intron 45.0%
GGATGTCTGCTAAACTGTTC+GGG + Chr1:69248664-69248683 None:intergenic 45.0%
GGCGCTTCCGTATTGTTTAA+AGG - Chr1:69246221-69246240 MsG0180003854.01.T01:intron 45.0%
GTGTATCTGCAAGAATAGGG+TGG - Chr1:69246778-69246797 MsG0180003854.01.T01:intron 45.0%
TAAACTGTTCGGGATTGACG+TGG + Chr1:69248654-69248673 None:intergenic 45.0%
TATGCCTCAGAAACTTCCAC+CGG + Chr1:69246642-69246661 None:intergenic 45.0%
TGCGATTTCGTTGCTGAAGA+GGG - Chr1:69246707-69246726 MsG0180003854.01.T01:intron 45.0%
TGGGGTGTATAAGGGTTTGT+TGG + Chr1:69245582-69245601 None:intergenic 45.0%
TTTACGAGAACCTCTGAACC+GGG + Chr1:69248175-69248194 None:intergenic 45.0%
! CATGAAAGAGGGTTTTGCGA+AGG - Chr1:69245417-69245436 MsG0180003854.01.T01:three_prime_UTR 45.0%
! GGGGTGTATAAGGGTTTGTT+GGG + Chr1:69245581-69245600 None:intergenic 45.0%
! GGGTGGACATGGTTTGAAAT+GGG + Chr1:69245601-69245620 None:intergenic 45.0%
! GGTGGACATGGTTTGAAATG+GGG + Chr1:69245600-69245619 None:intergenic 45.0%
! TTTTTGGATGAGGGTGGACA+TGG + Chr1:69245612-69245631 None:intergenic 45.0%
!! AAGAGGCGCTAGAGAATCTT+CGG - Chr1:69246091-69246110 MsG0180003854.01.T01:intron 45.0%
!! GGAAGTTTCTGAGGCATACT+CGG - Chr1:69246644-69246663 MsG0180003854.01.T01:intron 45.0%
!! GGGGAAAGCGTTATGTAATC+AGG - Chr1:69246545-69246564 MsG0180003854.01.T01:intron 45.0%
!! GGGTGTATAAGGGTTTGTTG+GGG + Chr1:69245580-69245599 None:intergenic 45.0%
!! GGTGTATAAGGGTTTGTTGG+GGG + Chr1:69245579-69245598 None:intergenic 45.0%
!!! AGGCTAATAGGGTTTTGGGT+AGG - Chr1:69245971-69245990 MsG0180003854.01.T01:intron 45.0%
!!! GGTCCCAAACATTTTGGAGT+TGG - Chr1:69246879-69246898 MsG0180003854.01.T01:intron 45.0%
CCATGTGCAATTATGGGCTC+AGG + Chr1:69247906-69247925 None:intergenic 50.0%
CCTGAGCCCATAATTGCACA+TGG - Chr1:69247903-69247922 MsG0180003854.01.T01:CDS 50.0%
CGCAAAACCCTCTTTCATGG+AGG + Chr1:69245416-69245435 None:intergenic 50.0%
CGGTTCAGAGGTTCTCGTAA+AGG - Chr1:69248174-69248193 MsG0180003854.01.T01:CDS 50.0%
CTGCGATTTCGTTGCTGAAG+AGG - Chr1:69246706-69246725 MsG0180003854.01.T01:intron 50.0%
CTGTTGAGGTTGCGCATGAT+AGG - Chr1:69246280-69246299 MsG0180003854.01.T01:intron 50.0%
CTTCTTCTGCACTTGCTCCA+TGG + Chr1:69248428-69248447 None:intergenic 50.0%
GAAGCTTGATCGTGAAGGTG+AGG - Chr1:69245795-69245814 MsG0180003854.01.T01:CDS 50.0%
GCGCATGATAGGAAGCTTCT+TGG - Chr1:69246291-69246310 MsG0180003854.01.T01:intron 50.0%
GCTTACAGGTAAGGTGAAGC+AGG - Chr1:69246809-69246828 MsG0180003854.01.T01:intron 50.0%
GGCTAATGTTAAGACGGCGA+TGG - Chr1:69246059-69246078 MsG0180003854.01.T01:intron 50.0%
GGGAGATACGATGAAGCTGT+TGG - Chr1:69246453-69246472 MsG0180003854.01.T01:intron 50.0%
GGTAGCCAAGGATATCATGG+AGG - Chr1:69246974-69246993 MsG0180003854.01.T01:intron 50.0%
GTGTGGGATTCAGATTCCAG+TGG - Chr1:69247208-69247227 MsG0180003854.01.T01:intron 50.0%
TACACCGGTGGAAGTTTCTG+AGG - Chr1:69246635-69246654 MsG0180003854.01.T01:intron 50.0%
TGCGGTAGCCAAGGATATCA+TGG - Chr1:69246971-69246990 MsG0180003854.01.T01:intron 50.0%
TGGGATGGAGGATCATGAGA+AGG - Chr1:69246326-69246345 MsG0180003854.01.T01:intron 50.0%
TGGGGGTGAAAAGAGGTTGA+TGG + Chr1:69245562-69245581 None:intergenic 50.0%
! GCTCAAAGCATTCGGTGAGA+TGG - Chr1:69245720-69245739 MsG0180003854.01.T01:CDS 50.0%
! GGGGGCAGCATATTTAGAGT+TGG - Chr1:69246920-69246939 MsG0180003854.01.T01:intron 50.0%
! GGGTGGTTGTTGTTGCTTAC+AGG - Chr1:69246795-69246814 MsG0180003854.01.T01:intron 50.0%
! GGTCTGAAGCTTGATCGTGA+AGG - Chr1:69245790-69245809 MsG0180003854.01.T01:CDS 50.0%
!! AGAGGTTGATGGATGCATCG+CGG + Chr1:69245551-69245570 None:intergenic 50.0%
!! AGTGGGTTTTTGGATGAGGG+TGG + Chr1:69245618-69245637 None:intergenic 50.0%
!! GGCGTTGGAGCAGAATGTTT+TGG - Chr1:69246347-69246366 MsG0180003854.01.T01:intron 50.0%
!! GGTTTGTTGGGGGTGAAAAG+AGG + Chr1:69245569-69245588 None:intergenic 50.0%
!! TGTGTCAGGTTGGGAGTTAC+TGG + Chr1:69248628-69248647 None:intergenic 50.0%
ACTGTTCGGGATTGACGTGG+CGG + Chr1:69248651-69248670 None:intergenic 55.0%
ATGTTAAGACGGCGATGGGG+AGG - Chr1:69246064-69246083 MsG0180003854.01.T01:intron 55.0%
CCTCATTTGCAGAGACACCG+CGG + Chr1:69248497-69248516 None:intergenic 55.0%
CTCATTTGCAGAGACACCGC+GGG + Chr1:69248496-69248515 None:intergenic 55.0%
CTTGGTTGTTCCCGGTTCAG+AGG - Chr1:69248162-69248181 MsG0180003854.01.T01:CDS 55.0%
GCAGATGTTTGCGGTAGCCA+AGG - Chr1:69246962-69246981 MsG0180003854.01.T01:intron 55.0%
GTCAGCAGCGCAGATGTTTG+CGG - Chr1:69246953-69246972 MsG0180003854.01.T01:intron 55.0%
TGGGAGTTACTGGATGCTGC+AGG + Chr1:69248618-69248637 None:intergenic 55.0%
! AACATCTGCGCTGCTGACTG+AGG + Chr1:69246951-69246970 None:intergenic 55.0%
! GGAGGATCATGAGAAGGCGT+TGG - Chr1:69246332-69246351 MsG0180003854.01.T01:intron 55.0%
! TTGATGGATGCATCGCGGAG+AGG + Chr1:69245546-69245565 None:intergenic 55.0%
ACGTGGCGGTGTGTCAGGTT+GGG + Chr1:69248637-69248656 None:intergenic 60.0%
CCACAAGAGCAGCACTCGGA+GGG - Chr1:69246753-69246772 MsG0180003854.01.T01:intron 60.0%
CCGCGGTGTCTCTGCAAATG+AGG - Chr1:69248494-69248513 MsG0180003854.01.T01:CDS 60.0%
GATTGACGTGGCGGTGTGTC+AGG + Chr1:69248642-69248661 None:intergenic 60.0%
GCTCCCACAAGAGCAGCACT+CGG - Chr1:69246749-69246768 MsG0180003854.01.T01:intron 60.0%
TCGCGGAGAGGAGAGAGAGA+AGG + Chr1:69245534-69245553 None:intergenic 60.0%
! CCTCCGAGTGCTGCTCTTGT+GGG + Chr1:69246755-69246774 None:intergenic 60.0%
CCCACAAGAGCAGCACTCGG+AGG - Chr1:69246752-69246771 MsG0180003854.01.T01:intron 65.0%
GACGTGGCGGTGTGTCAGGT+TGG + Chr1:69248638-69248657 None:intergenic 65.0%
GGCGATGGGGAGGAGAGAAG+AGG - Chr1:69246074-69246093 MsG0180003854.01.T01:intron 65.0%
! CCCTCCGAGTGCTGCTCTTG+TGG + Chr1:69246756-69246775 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 69245387 69248950 69245387 ID=MsG0180003854.01;Name=MsG0180003854.01
Chr1 mRNA 69245387 69248950 69245387 ID=MsG0180003854.01.T01;Parent=MsG0180003854.01;Name=MsG0180003854.01.T01;_AED=0.19;_eAED=0.19;_QI=331|1|1|1|1|1|2|276|551
Chr1 exon 69245387 69245963 69245387 ID=MsG0180003854.01.T01:exon:52109;Parent=MsG0180003854.01.T01
Chr1 exon 69247265 69248950 69247265 ID=MsG0180003854.01.T01:exon:52108;Parent=MsG0180003854.01.T01
Chr1 five_prime_UTR 69248620 69248950 69248620 ID=MsG0180003854.01.T01:five_prime_utr;Parent=MsG0180003854.01.T01
Chr1 CDS 69247265 69248619 69247265 ID=MsG0180003854.01.T01:cds;Parent=MsG0180003854.01.T01
Chr1 CDS 69245663 69245963 69245663 ID=MsG0180003854.01.T01:cds;Parent=MsG0180003854.01.T01
Chr1 three_prime_UTR 69245387 69245662 69245387 ID=MsG0180003854.01.T01:three_prime_utr;Parent=MsG0180003854.01.T01
Gene Sequence

>MsG0180003854.01.T01

ATGCTCAAAGCATTCGGTGAGATGGAAATTTCATTCAATGAAAAGGAGCTTGGTTTAGCTGCATTGAAAATTGGTCTGAAGCTTGATCGTGAAGGTGAGGATCCTGAAAAAGCTCTTGAATTTGCTAATAGAGCTTTGAAAGTGTTTGAAAATGAAAAGAAAGATTCTTTTCCTTATGCTATGAGTTTGCAGTTAATGGGTAGTCTTAATTATGGTTTAAATAGGTTTAGTGATAGTTTAGGGTATCTTAATAAGGCTAATAGGGTTTTGGGTAGGTTAGAGAATGAGGGTGTTTGTGTTGATGATGTTAGGCCTGTGCTTCATGCTGTGCAATTTGAGTTGGCTAATGTTAAGACGGCGATGGGGAGGAGAGAAGAGGCGCTAGAGAATCTTCGGAAGTGTTTGGAGATTAAGGAGATGACTTTTGAGGAAGATAGTGAGGAGTTAGGGAAAGGGAATAGGGATTTAGCGGAAGCTTATGTTGCGGTTTTGAATTTTAAGGAGGCGCTTCCGTATTGTTTAAAGGCGTTAGAGATACATACGAAGCGATTAGGGATGAATTCTGTTGAGGTTGCGCATGATAGGAAGCTTCTTGGGATTGTTTATAGTGGGATGGAGGATCATGAGAAGGCGTTGGAGCAGAATGTTTTGGCGCAGAAGATTTTGAAGAATTGGAATCTCAGTTCGGATTTGTTGCGCGCTGAAGTTGATGCTGCGAATATGATGATTGCTTTGGGGAGATACGATGAAGCTGTTGGTACTTTGAAGAACGTTGTGAATCAGACTGAGAAAGATAGTGAGACTCGAGCTCTTGTGCTTGTATCAATGGGGAAAGCGTTATGTAATCAGGAAAAGTTTGCAGACTGTAAAAGGTGTTTAGAGATTTCTATTGGGATTCTTGATAAAAGAGAACAGATTACACCGGTGGAAGTTTCTGAGGCATACTCGGAGATATCCATGCTATATGAAACTATGAACGAGTTCGAAACTGCGATTTCGTTGCTGAAGAGGGCACTAGCTTTGCTCGAGAAGCTCCCACAAGAGCAGCACTCGGAGGGAAGTGTATCTGCAAGAATAGGGTGGTTGTTGTTGCTTACAGGTAAGGTGAAGCAGGCTATTCCTTATTTGGAAAGTGCTGCTGAACGGTTGAAAGAGAGCTTTGGTCCCAAACATTTTGGAGTTGGTTATATCTACAACAATTTGGGGGCAGCATATTTAGAGTTGGATAGACCTCAGTCAGCAGCGCAGATGTTTGCGGTAGCCAAGGATATCATGGAGGTTTCTCTTGGTCCACATCATGCAGATACAATTGAAGCATGTCAGAATCTTTCAAAGGCTTATGGTGATATTGGAAGCCATTCCCTTGCAATTGAGTTTCAGCAGCAAGTTATAGATGCTTGGGAAAGCCATGGAGCAAGTGCAGAAGAAGAACTAAGAGAAGCTCAGCGACTACTCGAACAATTAAAGAAAAAAGCCCGCGGTGTCTCTGCAAATGAGGTTCCTATGAAGGCTCTTCACTTTCCTAATAATAATACACACGCAGCATCCAATAACTCCCAACCTGACATACCGTTACATCAATCCCATAATAGTACACCTGCAGCATCCAGTAACTCCCAACCTGACACACCGCCACGTCAATCCCGAACAGTTTAG

Protein sequence

>MsG0180003854.01.T01

MLKAFGEMEISFNEKELGLAALKIGLKLDREGEDPEKALEFANRALKVFENEKKDSFPYAMSLQLMGSLNYGLNRFSDSLGYLNKANRVLGRLENEGVCVDDVRPVLHAVQFELANVKTAMGRREEALENLRKCLEIKEMTFEEDSEELGKGNRDLAEAYVAVLNFKEALPYCLKALEIHTKRLGMNSVEVAHDRKLLGIVYSGMEDHEKALEQNVLAQKILKNWNLSSDLLRAEVDAANMMIALGRYDEAVGTLKNVVNQTEKDSETRALVLVSMGKALCNQEKFADCKRCLEISIGILDKREQITPVEVSEAYSEISMLYETMNEFETAISLLKRALALLEKLPQEQHSEGSVSARIGWLLLLTGKVKQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQMFAVAKDIMEVSLGPHHADTIEACQNLSKAYGDIGSHSLAIEFQQQVIDAWESHGASAEEELREAQRLLEQLKKKARGVSANEVPMKALHFPNNNTHAASNNSQPDIPLHQSHNSTPAASSNSQPDTPPRQSRTV*