AlfalfaGEDB | MsG0180001213.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001213.01

KEGG: K03595
GO: GO:0003723
PFAM: PF07650

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001213.01.T01	XP_013451437.2	83.186	226	19	2	107	332	209	415	2.59E-123	370

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001213.01.T01	O82653	66.814	226	56	2	107	332	231	437	4.77E-97	296

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001213.01.T01	A0A396HBP9	83.186	226	19	2	107	332	209	415	1.24e-123	370

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048135.01	MsG0180001213.01	0.809452	1.878936e-50	1.103574e-47
MsG0080048817.01	MsG0180001213.01	0.812602	3.903832e-51	2.492847e-48
MsG0180000152.01	MsG0180001213.01	0.827025	1.964563e-54	1.873821e-51
MsG0180000444.01	MsG0180001213.01	0.806838	6.773207e-50	3.714302e-47
MsG0180000546.01	MsG0180001213.01	0.823612	1.260992e-53	1.091134e-50
MsG0180000550.01	MsG0180001213.01	0.838101	3.511903e-57	4.655380e-54
MsG0180000614.01	MsG0180001213.01	0.810235	1.274956e-50	7.644114e-48
MsG0180000679.01	MsG0180001213.01	0.839951	1.165232e-57	1.635025e-54
MsG0180001043.01	MsG0180001213.01	0.805578	1.247603e-49	6.624206e-47
MsG0180001141.01	MsG0180001213.01	0.870253	1.678538e-66	6.486271e-63

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001213.01.T01	MTR_5g020440	83.186	226	19	2	107	332	215	421	6.36e-127	370
MsG0180001213.01.T01	MTR_6g024095	82.743	226	20	2	107	332	211	417	2.68e-126	368
MsG0180001213.01.T01	MTR_1g033240	80.973	226	24	2	107	332	185	391	1.06e-120	353

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001213.01.T01	AT1G30960	66.814	226	56	2	107	332	231	437	4.86e-98	296

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Find 91 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACAACTAGGGCATT+TGG	0.377310	1:-17465048	MsG0180001213.01.T01:three_prime_UTR
AAAATGGTGAGATACGAGTT+TGG	0.461973	1:-17465018	MsG0180001213.01.T01:three_prime_UTR
AAAATTGAGTTCCTAGACTC+CGG	0.604158	1:+17465163	None:intergenic
AAATAATGAGGAATGAAAAG+AGG	0.548756	1:-17468116	None:intergenic
AACCTATGTTCAATATCGTA+TGG	0.502441	1:+17466007	None:intergenic
AAGAAACAGGTTGAGTTCGT+TGG	0.544765	1:-17465230	MsG0180001213.01.T01:three_prime_UTR
AAGATCTTCCTGGATTTGAA+AGG	0.540512	1:-17466711	MsG0180001213.01.T01:intron
AAGATTCTTGTGGGGAAGCG+TGG	0.571176	1:-17465908	MsG0180001213.01.T01:CDS
AATAATGAGGAATGAAAAGA+GGG	0.502331	1:-17468115	None:intergenic
AATAGGCAGTAGAACGGCCC+TGG	0.484531	1:-17466233	MsG0180001213.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGTTTACCCTGAATC+TGG	-	Chr1:17465612-17465631	MsG0180001213.01.T01:intron	30.0%
AAACATACAACAGAAACAGA+TGG	+	Chr1:17467348-17467367	None:intergenic	30.0%
AACCTATGTTCAATATCGTA+TGG	+	Chr1:17467087-17467106	None:intergenic	30.0%
ATTAAGATTAAGGGAAACAC+TGG	-	Chr1:17466423-17466442	MsG0180001213.01.T01:intron	30.0%
CACTAGGGATTATTATATGA+AGG	+	Chr1:17465961-17465980	None:intergenic	30.0%
CACTTTCTCACTAACAAATT+AGG	-	Chr1:17467153-17467172	MsG0180001213.01.T01:intron	30.0%
CCTATTCATGTTTGTTTAAC+AGG	-	Chr1:17467581-17467600	MsG0180001213.01.T01:intron	30.0%
CCTGTTAAACAAACATGAAT+AGG	+	Chr1:17467584-17467603	None:intergenic	30.0%
CTCTGATGATAAATTCAAGT+AGG	-	Chr1:17465012-17465031	MsG0180001213.01.T01:three_prime_UTR	30.0%
GAAAAAGAAAGACTTATCGA+AGG	-	Chr1:17466342-17466361	MsG0180001213.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	17464980	17468133	17464980	ID=MsG0180001213.01;Name=MsG0180001213.01
Chr1	mRNA	17464980	17468133	17464980	ID=MsG0180001213.01.T01;Parent=MsG0180001213.01;Name=MsG0180001213.01.T01;_AED=0.41;_eAED=0.56;_QI=0\|0.5\|0.42\|1\|0.66\|0.28\|7\|446\|332
Chr1	exon	17464980	17465510	17464980	ID=MsG0180001213.01.T01:exon:6035;Parent=MsG0180001213.01.T01
Chr1	exon	17465896	17466035	17465896	ID=MsG0180001213.01.T01:exon:6034;Parent=MsG0180001213.01.T01
Chr1	exon	17466143	17466250	17466143	ID=MsG0180001213.01.T01:exon:6033;Parent=MsG0180001213.01.T01
Chr1	exon	17466463	17466583	17466463	ID=MsG0180001213.01.T01:exon:6032;Parent=MsG0180001213.01.T01
Chr1	exon	17466712	17467121	17466712	ID=MsG0180001213.01.T01:exon:6031;Parent=MsG0180001213.01.T01
Chr1	exon	17467696	17467802	17467696	ID=MsG0180001213.01.T01:exon:6030;Parent=MsG0180001213.01.T01
Chr1	exon	17468106	17468133	17468106	ID=MsG0180001213.01.T01:exon:6029;Parent=MsG0180001213.01.T01
Chr1	CDS	17468106	17468133	17468106	ID=MsG0180001213.01.T01:cds;Parent=MsG0180001213.01.T01
Chr1	CDS	17467696	17467802	17467696	ID=MsG0180001213.01.T01:cds;Parent=MsG0180001213.01.T01
Chr1	CDS	17466712	17467121	17466712	ID=MsG0180001213.01.T01:cds;Parent=MsG0180001213.01.T01
Chr1	CDS	17466463	17466583	17466463	ID=MsG0180001213.01.T01:cds;Parent=MsG0180001213.01.T01
Chr1	CDS	17466143	17466250	17466143	ID=MsG0180001213.01.T01:cds;Parent=MsG0180001213.01.T01
Chr1	CDS	17465896	17466035	17465896	ID=MsG0180001213.01.T01:cds;Parent=MsG0180001213.01.T01
Chr1	CDS	17465426	17465510	17465426	ID=MsG0180001213.01.T01:cds;Parent=MsG0180001213.01.T01
Chr1	three_prime_UTR	17464980	17465425	17464980	ID=MsG0180001213.01.T01:three_prime_utr;Parent=MsG0180001213.01.T01

Gene Sequence

>MsG0180001213.01.T01

ATGAGGAATGAAAAGAGGGATTTTGACAAACAATCGGAGCCCAGAGCCGTTGTTCTGGCACGTCGTTGTGCTGCGGCGAAATTAGATGTGTTAGGCGGAGAGAAAGAACTGGTTGCAGAGAAGATATTAGATCTGGGTGTCGATGGGTCATTGGTACCCAAGCAGTATGAAGCACTAACACTCATAGGTTTAGGTGGTCCACATGTTCGACATGTTGCAGACACCGATGCCTGTTTGATTCTTATAATACACGTGTTAGTATGTCAAAAACCTCAGACAAGTGTTATACATTCTTCCATTCTTTTAATGTTATACATTTATTGTTCTTTTCATTTCTTTTCATTATTAGTGATCCCATTCCGTTTTTTAACATTCCATCAATATAGGCCTGATTCAAGAGTTGTAAAACTGATCAAGCGAATGGGAGAACGGTCCATTCCAAATCAAAAGCGAGTTTTGTGTATGAATAAGATTGATTTAGTAGAGAAAAAGAAAGACTTATCGAAGGTTGCTGAAGAATTCGAAGATCTTCCTGGATTTGAAAGGCGTTTCATGATATCTGGAATGAAGGGGGCTGGCGTAAAAGATTTGACTCAGTTCTTGATGGAGCAGGCATGTGTCTTTCTATTTCTTTTATACATTAGTTGTATACAAATTATAGTATTGGCAGTAGAACGGCCCTGGGAAGAAGATCCATTTACCATGACCGAGGAAGTTATGAAAATGATATCATTAGAAGTTGTGCGTGAAAGGTTGTTGGACCATGTACATCAGGAAATTCCATACGATATTGAACATAGGTTGATTGACTGGAAAGAGTTGCGAGATGGTTCTCTTAGGATTGAACAGCACTTTCTCACTAACAAATTAGGCCAACTCAAGATTCTTGTGGGGAAGCGTGGCTCAAAAATTGGGAGAATAGGAATAGAAGCTAATGAAGAGCTAAGGACCATTTTCAAAAAGCAAGTGCATCTAGTTCTTCAGGTTAAGCTCAAATGA

Protein sequence

>MsG0180001213.01.T01

MRNEKRDFDKQSEPRAVVLARRCAAAKLDVLGGEKELVAEKILDLGVDGSLVPKQYEALTLIGLGGPHVRHVADTDACLILIIHVLVCQKPQTSVIHSSILLMLYIYCSFHFFSLLVIPFRFLTFHQYRPDSRVVKLIKRMGERSIPNQKRVLCMNKIDLVEKKKDLSKVAEEFEDLPGFERRFMISGMKGAGVKDLTQFLMEQACVFLFLLYISCIQIIVLAVERPWEEDPFTMTEEVMKMISLEVVRERLLDHVHQEIPYDIEHRLIDWKELRDGSLRIEQHFLTNKLGQLKILVGKRGSKIGRIGIEANEELRTIFKKQVHLVLQVKLK*