Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007731.01.T01 | XP_013463023.1 | 94.848 | 330 | 17 | 0 | 1 | 330 | 1 | 330 | 0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007731.01.T01 | A0A072V6T2 | 94.848 | 330 | 17 | 0 | 1 | 330 | 1 | 330 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000028.01 | MsG0280007731.01 | 0.821897 | 3.161724e-53 | 2.605894e-50 |
| MsG0180006195.01 | MsG0280007731.01 | 0.802653 | 5.065232e-49 | 2.494778e-46 |
| MsG0280007731.01 | MsG0380016490.01 | 0.820478 | 6.714781e-53 | 5.318875e-50 |
| MsG0280007731.01 | MsG0480020118.01 | 0.810575 | 1.076492e-50 | 6.512732e-48 |
| MsG0280007731.01 | MsG0480020810.01 | 0.807428 | 5.080193e-50 | 2.828850e-47 |
| MsG0280007731.01 | MsG0480021091.01 | 0.814005 | 1.919697e-51 | 1.273082e-48 |
| MsG0280007731.01 | MsG0580024980.01 | 0.801798 | 7.595033e-49 | 3.660325e-46 |
| MsG0280007731.01 | MsG0780036835.01 | 0.803044 | 4.206905e-49 | 2.092703e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007731.01.T01 | MTR_2g030835 | 94.848 | 330 | 17 | 0 | 1 | 330 | 1 | 330 | 0.0 | 656 |
| MsG0280007731.01.T01 | MTR_2g021580 | 94.562 | 331 | 17 | 1 | 1 | 330 | 1 | 331 | 0.0 | 652 |
| MsG0280007731.01.T01 | MTR_2g030825 | 88.136 | 295 | 35 | 0 | 36 | 330 | 301 | 595 | 0.0 | 549 |
| MsG0280007731.01.T01 | MTR_2g030825 | 81.944 | 72 | 13 | 0 | 1 | 72 | 1 | 72 | 1.94e-23 | 101 |
| MsG0280007731.01.T01 | MTR_2g030845 | 87.458 | 295 | 37 | 0 | 36 | 330 | 302 | 596 | 0.0 | 544 |
| MsG0280007731.01.T01 | MTR_2g030845 | 81.944 | 72 | 13 | 0 | 1 | 72 | 1 | 72 | 1.80e-23 | 101 |
| MsG0280007731.01.T01 | MTR_2g080260 | 41.195 | 318 | 154 | 8 | 37 | 330 | 33 | 341 | 8.95e-80 | 246 |
| MsG0280007731.01.T01 | MTR_2g080230 | 40.881 | 318 | 155 | 8 | 37 | 330 | 33 | 341 | 6.28e-79 | 244 |
| MsG0280007731.01.T01 | MTR_4g059670 | 40.138 | 289 | 150 | 4 | 25 | 294 | 98 | 382 | 1.37e-77 | 243 |
| MsG0280007731.01.T01 | MTR_8g464300 | 38.395 | 349 | 188 | 8 | 1 | 330 | 1 | 341 | 1.63e-77 | 241 |
| MsG0280007731.01.T01 | MTR_4g059630 | 40.426 | 282 | 146 | 5 | 33 | 294 | 94 | 373 | 3.70e-74 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007731.01.T01 | AT3G19430 | 60.828 | 314 | 113 | 4 | 24 | 330 | 272 | 582 | 6.41e-136 | 398 |
| MsG0280007731.01.T01 | AT3G19430 | 64.706 | 68 | 21 | 2 | 6 | 72 | 9 | 74 | 6.83e-18 | 84.7 |
| MsG0280007731.01.T01 | AT3G19430 | 60.828 | 314 | 113 | 4 | 24 | 330 | 249 | 559 | 7.50e-136 | 397 |
| MsG0280007731.01.T01 | AT3G19430 | 71.154 | 52 | 13 | 1 | 21 | 72 | 2 | 51 | 1.65e-15 | 77.8 |
| MsG0280007731.01.T01 | AT5G60520 | 44.595 | 296 | 138 | 5 | 24 | 299 | 43 | 332 | 2.15e-84 | 258 |
| MsG0280007731.01.T01 | AT5G54370 | 39.935 | 308 | 162 | 7 | 43 | 330 | 33 | 337 | 2.58e-80 | 248 |
| MsG0280007731.01.T01 | AT5G60530 | 43.706 | 286 | 136 | 6 | 30 | 294 | 147 | 428 | 5.06e-79 | 248 |
| MsG0280007731.01.T01 | AT4G27400 | 36.232 | 345 | 196 | 8 | 6 | 330 | 1 | 341 | 1.75e-72 | 228 |
| MsG0280007731.01.T01 | AT1G54890 | 37.176 | 347 | 180 | 11 | 8 | 330 | 15 | 347 | 1.62e-71 | 226 |
Find 81 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTAATGGTTCAAATTT+TGG | 0.079756 | 2:+19754751 | MsG0280007731.01.T01:CDS |
| CTCGAGTCTTCTTCCGTTAT+AGG | 0.179396 | 2:-19755608 | None:intergenic |
| TCTTTCAATGGCTAAATTAA+TGG | 0.188419 | 2:+19754739 | None:intergenic |
| TTTGTACTTCTTTATCTTGC+AGG | 0.230223 | 2:-19754855 | None:intergenic |
| TATTGGAACTGTGGAGAATT+TGG | 0.242978 | 2:+19755880 | MsG0280007731.01.T01:CDS |
| CATAGTTAGGTTTATATGTT+TGG | 0.296754 | 2:-19755730 | None:intergenic |
| CATCTAGTGTGTCCATTGTT+AGG | 0.297898 | 2:+19755519 | MsG0280007731.01.T01:CDS |
| GACTCGAGGATTCATAATTA+TGG | 0.299742 | 2:+19755623 | MsG0280007731.01.T01:CDS |
| AATGGATTAAACAAAGATAT+TGG | 0.344934 | 2:+19755863 | MsG0280007731.01.T01:CDS |
| TGTTCTGTTGCACGTTTCAT+TGG | 0.361900 | 2:+19755836 | MsG0280007731.01.T01:CDS |
| TGCCAAGACCCTCGTTTCAT+TGG | 0.369732 | 2:+19755212 | MsG0280007731.01.T01:CDS |
| TATTAAGACTTACAGCAAAT+AGG | 0.369757 | 2:-19754953 | None:intergenic |
| TCTGATTCGTTGAGGGTGAT+TGG | 0.372665 | 2:-19755479 | None:intergenic |
| GACAATCACCAACTCTTCCT+TGG | 0.372957 | 2:+19755392 | MsG0280007731.01.T01:CDS |
| TTCACACGACTCACATAGTT+AGG | 0.382367 | 2:-19755743 | None:intergenic |
| CGAATCAGAAGGTGCGAAAT+GGG | 0.400701 | 2:+19755493 | MsG0280007731.01.T01:CDS |
| TCACGACCTTTACCAATTCC+AGG | 0.401435 | 2:-19754818 | None:intergenic |
| GTACAAACATTGCTATAATT+CGG | 0.404112 | 2:+19754871 | MsG0280007731.01.T01:CDS |
| CAAGACCCTCGTTTCATTGG+TGG | 0.405639 | 2:+19755215 | MsG0280007731.01.T01:CDS |
| AACATCATTGTTGAAGTTGA+AGG | 0.408673 | 2:+19755557 | MsG0280007731.01.T01:CDS |
| CGCACCTTCTGATTCGTTGA+GGG | 0.414181 | 2:-19755486 | None:intergenic |
| GCAGCTACTCCTCCTGGAAT+TGG | 0.414510 | 2:+19754806 | MsG0280007731.01.T01:CDS |
| ACGAATCAGAAGGTGCGAAA+TGG | 0.416928 | 2:+19755492 | MsG0280007731.01.T01:CDS |
| AGCTGCACAAGTGGAATTGA+TGG | 0.435142 | 2:+19755917 | MsG0280007731.01.T01:CDS |
| CCTCGTTTCATTGGTGGTGA+TGG | 0.435255 | 2:+19755221 | MsG0280007731.01.T01:CDS |
| CACATCAATGCTCATTTCAT+AGG | 0.440453 | 2:+19755308 | MsG0280007731.01.T01:CDS |
| GGGTCTTGGCAAACAGCTCC+TGG | 0.441504 | 2:-19755200 | None:intergenic |
| TTCAACAATGATGTTGTTTG+TGG | 0.443613 | 2:-19755549 | None:intergenic |
| GTGGAAGCAGCTACTCCTCC+TGG | 0.450889 | 2:+19754800 | MsG0280007731.01.T01:CDS |
| TCTCCTTGTGCTAGTGGCAG+TGG | 0.455412 | 2:+19754781 | MsG0280007731.01.T01:CDS |
| CCACTTGTGCAGCTCATGCT+AGG | 0.463543 | 2:-19755908 | None:intergenic |
| ATCTAGTGTGTCCATTGTTA+GGG | 0.463785 | 2:+19755520 | MsG0280007731.01.T01:CDS |
| ATGAGCATTGATGTGGAGGT+TGG | 0.485380 | 2:-19755300 | None:intergenic |
| GTCAATTCTCCTTGTGCTAG+TGG | 0.485779 | 2:+19754775 | MsG0280007731.01.T01:CDS |
| CGTCTTGCCCTCTCCTTTGA+CGG | 0.487378 | 2:+19755452 | MsG0280007731.01.T01:CDS |
| TTGTGCAGCTCATGCTAGGG+AGG | 0.490254 | 2:-19755904 | None:intergenic |
| CAAAGAGAATAACAATGGAT+TGG | 0.496097 | 2:-19755370 | None:intergenic |
| AGCTAAGGTTGTTCCTATAA+CGG | 0.505009 | 2:+19755595 | MsG0280007731.01.T01:CDS |
| AAACGTGCAACAGAACAATC+TGG | 0.505933 | 2:-19755830 | None:intergenic |
| CACCAATGAAACGAGGGTCT+TGG | 0.512112 | 2:-19755214 | None:intergenic |
| AATTGGTAAAGGTCGTGAGC+AGG | 0.512231 | 2:+19754823 | MsG0280007731.01.T01:CDS |
| CAATGAAGTGAGTGGTGTGT+TGG | 0.513418 | 2:+19755706 | MsG0280007731.01.T01:CDS |
| CCTAGCATGAGCTGCACAAG+TGG | 0.523088 | 2:+19755908 | MsG0280007731.01.T01:CDS |
| AGAATTTGAACCCTAAATCA+AGG | 0.524288 | 2:-19755673 | None:intergenic |
| AATGAAGTGAGTGGTGTGTT+GGG | 0.526305 | 2:+19755707 | MsG0280007731.01.T01:CDS |
| GGTGATTGGTTCGCCGTCAA+AGG | 0.528058 | 2:-19755465 | None:intergenic |
| TTTGGGCTCCAAGGAAGAGT+TGG | 0.531333 | 2:-19755400 | None:intergenic |
| CACTTGTGCAGCTCATGCTA+GGG | 0.541310 | 2:-19755907 | None:intergenic |
| TATGTGAGTCGTGTGAATAT+TGG | 0.542189 | 2:+19755749 | MsG0280007731.01.T01:CDS |
| ACTCCTCCTGGAATTGGTAA+AGG | 0.543750 | 2:+19754812 | MsG0280007731.01.T01:CDS |
| CACTCCACAGTACAATCATA+AGG | 0.545781 | 2:-19754917 | None:intergenic |
| TCGCACCTTCTGATTCGTTG+AGG | 0.555111 | 2:-19755487 | None:intergenic |
| CAATCATAAGGACAAGACTT+AGG | 0.557878 | 2:-19754905 | None:intergenic |
| ACATGAAAAGAGACTTCACC+TGG | 0.558398 | 2:+19755345 | MsG0280007731.01.T01:CDS |
| TGGTTCGCCGTCAAAGGAGA+GGG | 0.567947 | 2:-19755459 | None:intergenic |
| AAAATGCCAATAATGGGAGG+TGG | 0.577355 | 2:+19755776 | MsG0280007731.01.T01:CDS |
| GCACGTTTCATTGGAAACAA+TGG | 0.578031 | 2:+19755845 | MsG0280007731.01.T01:CDS |
| TGTGGAAGTTTCCCTAACAA+TGG | 0.578770 | 2:-19755531 | None:intergenic |
| AGTTGTTGTCTTTCTTGCCG+TGG | 0.590633 | 2:-19755259 | None:intergenic |
| ACAAGTGGAATTGATGGAGA+AGG | 0.599680 | 2:+19755923 | MsG0280007731.01.T01:CDS |
| CTTCCACTGCCACTAGCACA+AGG | 0.603316 | 2:-19754784 | None:intergenic |
| ATTGTCAAAGAGAATAACAA+TGG | 0.604409 | 2:-19755375 | None:intergenic |
| ATTGGTAAAGGTCGTGAGCA+GGG | 0.605845 | 2:+19754824 | MsG0280007731.01.T01:CDS |
| ATTGCAGCGTGTGACAAACC+AGG | 0.606428 | 2:+19755182 | MsG0280007731.01.T01:intron |
| AAACAAAGATATTGGAACTG+TGG | 0.625848 | 2:+19755871 | MsG0280007731.01.T01:CDS |
| TTGGTTCGCCGTCAAAGGAG+AGG | 0.633373 | 2:-19755460 | None:intergenic |
| GGAGGTTGGAATCAGATACA+AGG | 0.635514 | 2:-19755286 | None:intergenic |
| CTATGAAATGAGCATTGATG+TGG | 0.638729 | 2:-19755307 | None:intergenic |
| TGTGCAGCTCATGCTAGGGA+GGG | 0.638901 | 2:-19755903 | None:intergenic |
| TTGTCCTTATGATTGTACTG+TGG | 0.645867 | 2:+19754913 | MsG0280007731.01.T01:CDS |
| ACAGCAAATAGGTTTGCAAG+AGG | 0.646025 | 2:-19754942 | None:intergenic |
| AATAACAATGGATTGGACCC+AGG | 0.651954 | 2:-19755363 | None:intergenic |
| TGAAATGAGCATTGATGTGG+AGG | 0.661201 | 2:-19755304 | None:intergenic |
| CGTCAAAGGAGAGGGCAAGA+CGG | 0.661632 | 2:-19755451 | None:intergenic |
| ATCACCCTCAACGAATCAGA+AGG | 0.662052 | 2:+19755482 | MsG0280007731.01.T01:CDS |
| CCATCACCACCAATGAAACG+AGG | 0.665903 | 2:-19755221 | None:intergenic |
| CTATAACGGAAGAAGACTCG+AGG | 0.676486 | 2:+19755609 | MsG0280007731.01.T01:CDS |
| CATCACCACCAATGAAACGA+GGG | 0.709865 | 2:-19755220 | None:intergenic |
| CGACCTTTACCAATTCCAGG+AGG | 0.745098 | 2:-19754815 | None:intergenic |
| TCTTTGAGCAATGAAGTGAG+TGG | 0.745664 | 2:+19755698 | MsG0280007731.01.T01:CDS |
| CATGAAAAGAGACTTCACCT+GGG | 0.750322 | 2:+19755346 | MsG0280007731.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTAATGGTTCAAATTT+TGG | + | Chr2:19754751-19754770 | MsG0280007731.01.T01:CDS | 15.0% |
| !!! | AATGGATTAAACAAAGATAT+TGG | + | Chr2:19755863-19755882 | MsG0280007731.01.T01:CDS | 20.0% |
| !!! | TCAATTTTTGCATGAATATA+TGG | + | Chr2:19755046-19755065 | MsG0280007731.01.T01:intron | 20.0% |
| ! | ATTGTCAAAGAGAATAACAA+TGG | - | Chr2:19755378-19755397 | None:intergenic | 25.0% |
| ! | CATAGTTAGGTTTATATGTT+TGG | - | Chr2:19755733-19755752 | None:intergenic | 25.0% |
| ! | GTACAAACATTGCTATAATT+CGG | + | Chr2:19754871-19754890 | MsG0280007731.01.T01:CDS | 25.0% |
| ! | TATTAAGACTTACAGCAAAT+AGG | - | Chr2:19754956-19754975 | None:intergenic | 25.0% |
| !! | TTGAAGTTGAAGGAAATTTT+AGG | + | Chr2:19755567-19755586 | MsG0280007731.01.T01:CDS | 25.0% |
| !!! | AAATTTTAGGATAACAGCTA+AGG | + | Chr2:19755580-19755599 | MsG0280007731.01.T01:CDS | 25.0% |
| AAACAAAGATATTGGAACTG+TGG | + | Chr2:19755871-19755890 | MsG0280007731.01.T01:CDS | 30.0% | |
| AACATCATTGTTGAAGTTGA+AGG | + | Chr2:19755557-19755576 | MsG0280007731.01.T01:CDS | 30.0% | |
| AGAATTTGAACCCTAAATCA+AGG | - | Chr2:19755676-19755695 | None:intergenic | 30.0% | |
| CAAAGAGAATAACAATGGAT+TGG | - | Chr2:19755373-19755392 | None:intergenic | 30.0% | |
| GTCTTGCATTAAGTTAAACT+TGG | + | Chr2:19755012-19755031 | MsG0280007731.01.T01:intron | 30.0% | |
| TTTGTACTTCTTTATCTTGC+AGG | - | Chr2:19754858-19754877 | None:intergenic | 30.0% | |
| ! | TTCAACAATGATGTTGTTTG+TGG | - | Chr2:19755552-19755571 | None:intergenic | 30.0% |
| !!! | ATCCCATGTTGATGTTTTTT+GGG | - | Chr2:19755420-19755439 | None:intergenic | 30.0% |
| AGCCCAAAAAACATCAACAT+GGG | + | Chr2:19755415-19755434 | MsG0280007731.01.T01:CDS | 35.0% | |
| AGCTAAGGTTGTTCCTATAA+CGG | + | Chr2:19755595-19755614 | MsG0280007731.01.T01:CDS | 35.0% | |
| ATCTAGTGTGTCCATTGTTA+GGG | + | Chr2:19755520-19755539 | MsG0280007731.01.T01:CDS | 35.0% | |
| CAATCATAAGGACAAGACTT+AGG | - | Chr2:19754908-19754927 | None:intergenic | 35.0% | |
| CACATCAATGCTCATTTCAT+AGG | + | Chr2:19755308-19755327 | MsG0280007731.01.T01:CDS | 35.0% | |
| GACTCGAGGATTCATAATTA+TGG | + | Chr2:19755623-19755642 | MsG0280007731.01.T01:CDS | 35.0% | |
| GGTGCAAAAATGCCAATAAT+GGG | + | Chr2:19755770-19755789 | MsG0280007731.01.T01:CDS | 35.0% | |
| TATGTGAGTCGTGTGAATAT+TGG | + | Chr2:19755749-19755768 | MsG0280007731.01.T01:CDS | 35.0% | |
| TATTGGAACTGTGGAGAATT+TGG | + | Chr2:19755880-19755899 | MsG0280007731.01.T01:CDS | 35.0% | |
| TGGTGCAAAAATGCCAATAA+TGG | + | Chr2:19755769-19755788 | MsG0280007731.01.T01:CDS | 35.0% | |
| TTGTCCTTATGATTGTACTG+TGG | + | Chr2:19754913-19754932 | MsG0280007731.01.T01:CDS | 35.0% | |
| ! | GTTTTGCTCACCTTGATTTA+GGG | + | Chr2:19755663-19755682 | MsG0280007731.01.T01:CDS | 35.0% |
| ! | TGTTTTGCTCACCTTGATTT+AGG | + | Chr2:19755662-19755681 | MsG0280007731.01.T01:CDS | 35.0% |
| !! | CTATGAAATGAGCATTGATG+TGG | - | Chr2:19755310-19755329 | None:intergenic | 35.0% |
| !!! | CATCCCATGTTGATGTTTTT+TGG | - | Chr2:19755421-19755440 | None:intergenic | 35.0% |
| !!! | GGAATCACTTTTTACTTCCA+CGG | + | Chr2:19755242-19755261 | MsG0280007731.01.T01:CDS | 35.0% |
| AAACGTGCAACAGAACAATC+TGG | - | Chr2:19755833-19755852 | None:intergenic | 40.0% | |
| AATGAAGTGAGTGGTGTGTT+GGG | + | Chr2:19755707-19755726 | MsG0280007731.01.T01:CDS | 40.0% | |
| ACAAGTGGAATTGATGGAGA+AGG | + | Chr2:19755923-19755942 | MsG0280007731.01.T01:CDS | 40.0% | |
| ACAGCAAATAGGTTTGCAAG+AGG | - | Chr2:19754945-19754964 | None:intergenic | 40.0% | |
| ACATGAAAAGAGACTTCACC+TGG | + | Chr2:19755345-19755364 | MsG0280007731.01.T01:CDS | 40.0% | |
| CACTCCACAGTACAATCATA+AGG | - | Chr2:19754920-19754939 | None:intergenic | 40.0% | |
| CATCTAGTGTGTCCATTGTT+AGG | + | Chr2:19755519-19755538 | MsG0280007731.01.T01:CDS | 40.0% | |
| CATGAAAAGAGACTTCACCT+GGG | + | Chr2:19755346-19755365 | MsG0280007731.01.T01:CDS | 40.0% | |
| GAGCCCAAAAAACATCAACA+TGG | + | Chr2:19755414-19755433 | MsG0280007731.01.T01:CDS | 40.0% | |
| GCACGTTTCATTGGAAACAA+TGG | + | Chr2:19755845-19755864 | MsG0280007731.01.T01:CDS | 40.0% | |
| TCTTTGAGCAATGAAGTGAG+TGG | + | Chr2:19755698-19755717 | MsG0280007731.01.T01:CDS | 40.0% | |
| TGTGGAAGTTTCCCTAACAA+TGG | - | Chr2:19755534-19755553 | None:intergenic | 40.0% | |
| TGTTCTGTTGCACGTTTCAT+TGG | + | Chr2:19755836-19755855 | MsG0280007731.01.T01:CDS | 40.0% | |
| TTCACACGACTCACATAGTT+AGG | - | Chr2:19755746-19755765 | None:intergenic | 40.0% | |
| ! | AAAATGCCAATAATGGGAGG+TGG | + | Chr2:19755776-19755795 | MsG0280007731.01.T01:CDS | 40.0% |
| ! | GCAAAAATGCCAATAATGGG+AGG | + | Chr2:19755773-19755792 | MsG0280007731.01.T01:CDS | 40.0% |
| ! | TCTTTTCCACCTCCCATTAT+TGG | - | Chr2:19755785-19755804 | None:intergenic | 40.0% |
| !! | AATAACAATGGATTGGACCC+AGG | - | Chr2:19755366-19755385 | None:intergenic | 40.0% |
| !! | TGAAATGAGCATTGATGTGG+AGG | - | Chr2:19755307-19755326 | None:intergenic | 40.0% |
| !!! | TTGATGTTTTTTGGGCTCCA+AGG | - | Chr2:19755412-19755431 | None:intergenic | 40.0% |
| AATTGGTAAAGGTCGTGAGC+AGG | + | Chr2:19754823-19754842 | MsG0280007731.01.T01:CDS | 45.0% | |
| ACTCCTCCTGGAATTGGTAA+AGG | + | Chr2:19754812-19754831 | MsG0280007731.01.T01:CDS | 45.0% | |
| AGCTGCACAAGTGGAATTGA+TGG | + | Chr2:19755917-19755936 | MsG0280007731.01.T01:CDS | 45.0% | |
| AGTTGTTGTCTTTCTTGCCG+TGG | - | Chr2:19755262-19755281 | None:intergenic | 45.0% | |
| ATCACCCTCAACGAATCAGA+AGG | + | Chr2:19755482-19755501 | MsG0280007731.01.T01:CDS | 45.0% | |
| ATTGGTAAAGGTCGTGAGCA+GGG | + | Chr2:19754824-19754843 | MsG0280007731.01.T01:CDS | 45.0% | |
| CAATGAAGTGAGTGGTGTGT+TGG | + | Chr2:19755706-19755725 | MsG0280007731.01.T01:CDS | 45.0% | |
| CATCACCACCAATGAAACGA+GGG | - | Chr2:19755223-19755242 | None:intergenic | 45.0% | |
| CTCGAGTCTTCTTCCGTTAT+AGG | - | Chr2:19755611-19755630 | None:intergenic | 45.0% | |
| GACAATCACCAACTCTTCCT+TGG | + | Chr2:19755392-19755411 | MsG0280007731.01.T01:CDS | 45.0% | |
| GGAGGTTGGAATCAGATACA+AGG | - | Chr2:19755289-19755308 | None:intergenic | 45.0% | |
| GTCAATTCTCCTTGTGCTAG+TGG | + | Chr2:19754775-19754794 | MsG0280007731.01.T01:CDS | 45.0% | |
| TCACGACCTTTACCAATTCC+AGG | - | Chr2:19754821-19754840 | None:intergenic | 45.0% | |
| ! | ACGAATCAGAAGGTGCGAAA+TGG | + | Chr2:19755492-19755511 | MsG0280007731.01.T01:CDS | 45.0% |
| ! | CGAATCAGAAGGTGCGAAAT+GGG | + | Chr2:19755493-19755512 | MsG0280007731.01.T01:CDS | 45.0% |
| ! | CTATAACGGAAGAAGACTCG+AGG | + | Chr2:19755609-19755628 | MsG0280007731.01.T01:CDS | 45.0% |
| ! | TCTGATTCGTTGAGGGTGAT+TGG | - | Chr2:19755482-19755501 | None:intergenic | 45.0% |
| !! | ATGAGCATTGATGTGGAGGT+TGG | - | Chr2:19755303-19755322 | None:intergenic | 45.0% |
| ATTGCAGCGTGTGACAAACC+AGG | + | Chr2:19755182-19755201 | MsG0280007731.01.T01:intron | 50.0% | |
| CAAGACCCTCGTTTCATTGG+TGG | + | Chr2:19755215-19755234 | MsG0280007731.01.T01:CDS | 50.0% | |
| CACCAATGAAACGAGGGTCT+TGG | - | Chr2:19755217-19755236 | None:intergenic | 50.0% | |
| CACTTGTGCAGCTCATGCTA+GGG | - | Chr2:19755910-19755929 | None:intergenic | 50.0% | |
| CCATCACCACCAATGAAACG+AGG | - | Chr2:19755224-19755243 | None:intergenic | 50.0% | |
| CGACCTTTACCAATTCCAGG+AGG | - | Chr2:19754818-19754837 | None:intergenic | 50.0% | |
| TGCCAAGACCCTCGTTTCAT+TGG | + | Chr2:19755212-19755231 | MsG0280007731.01.T01:CDS | 50.0% | |
| TTTGGGCTCCAAGGAAGAGT+TGG | - | Chr2:19755403-19755422 | None:intergenic | 50.0% | |
| ! | CGCACCTTCTGATTCGTTGA+GGG | - | Chr2:19755489-19755508 | None:intergenic | 50.0% |
| ! | TCGCACCTTCTGATTCGTTG+AGG | - | Chr2:19755490-19755509 | None:intergenic | 50.0% |
| !! | CCTCGTTTCATTGGTGGTGA+TGG | + | Chr2:19755221-19755240 | MsG0280007731.01.T01:CDS | 50.0% |
| CCACTTGTGCAGCTCATGCT+AGG | - | Chr2:19755911-19755930 | None:intergenic | 55.0% | |
| CCTAGCATGAGCTGCACAAG+TGG | + | Chr2:19755908-19755927 | MsG0280007731.01.T01:CDS | 55.0% | |
| CGTCAAAGGAGAGGGCAAGA+CGG | - | Chr2:19755454-19755473 | None:intergenic | 55.0% | |
| CGTCTTGCCCTCTCCTTTGA+CGG | + | Chr2:19755452-19755471 | MsG0280007731.01.T01:CDS | 55.0% | |
| CTTCCACTGCCACTAGCACA+AGG | - | Chr2:19754787-19754806 | None:intergenic | 55.0% | |
| GCAGCTACTCCTCCTGGAAT+TGG | + | Chr2:19754806-19754825 | MsG0280007731.01.T01:CDS | 55.0% | |
| TCTCCTTGTGCTAGTGGCAG+TGG | + | Chr2:19754781-19754800 | MsG0280007731.01.T01:CDS | 55.0% | |
| TGGTTCGCCGTCAAAGGAGA+GGG | - | Chr2:19755462-19755481 | None:intergenic | 55.0% | |
| TGTGCAGCTCATGCTAGGGA+GGG | - | Chr2:19755906-19755925 | None:intergenic | 55.0% | |
| TTGTGCAGCTCATGCTAGGG+AGG | - | Chr2:19755907-19755926 | None:intergenic | 55.0% | |
| ! | TTGGTTCGCCGTCAAAGGAG+AGG | - | Chr2:19755463-19755482 | None:intergenic | 55.0% |
| !! | GGTGATTGGTTCGCCGTCAA+AGG | - | Chr2:19755468-19755487 | None:intergenic | 55.0% |
| GGGTCTTGGCAAACAGCTCC+TGG | - | Chr2:19755203-19755222 | None:intergenic | 60.0% | |
| GTGGAAGCAGCTACTCCTCC+TGG | + | Chr2:19754800-19754819 | MsG0280007731.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 19754746 | 19755964 | 19754746 | ID=MsG0280007731.01;Name=MsG0280007731.01 |
| Chr2 | mRNA | 19754746 | 19755964 | 19754746 | ID=MsG0280007731.01.T01;Parent=MsG0280007731.01;Name=MsG0280007731.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|2|0|330 |
| Chr2 | exon | 19754746 | 19754962 | 19754746 | ID=MsG0280007731.01.T01:exon:10250;Parent=MsG0280007731.01.T01 |
| Chr2 | exon | 19755189 | 19755964 | 19755189 | ID=MsG0280007731.01.T01:exon:10251;Parent=MsG0280007731.01.T01 |
| Chr2 | CDS | 19754746 | 19754962 | 19754746 | ID=MsG0280007731.01.T01:cds;Parent=MsG0280007731.01.T01 |
| Chr2 | CDS | 19755189 | 19755964 | 19755189 | ID=MsG0280007731.01.T01:cds;Parent=MsG0280007731.01.T01 |
| Gene Sequence |
| Protein sequence |
