Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016490.01.T01 | AES72443.1 | 98.413 | 63 | 1 | 0 | 1 | 63 | 1 | 63 | 3.39E-34 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016490.01.T01 | O82337 | 63.462 | 52 | 19 | 0 | 12 | 63 | 11 | 62 | 1.00E-17 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016490.01.T01 | G7J699 | 98.413 | 63 | 1 | 0 | 1 | 63 | 1 | 63 | 1.62e-34 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047985.01 | MsG0380016490.01 | 0.810106 | 1.359293e-50 | 8.122808e-48 |
| MsG0080048134.01 | MsG0380016490.01 | 0.805325 | 1.410000e-49 | 7.437924e-47 |
| MsG0080048506.01 | MsG0380016490.01 | 0.829284 | 5.608958e-55 | 5.715996e-52 |
| MsG0080048507.01 | MsG0380016490.01 | 0.828083 | 1.094730e-54 | 1.076963e-51 |
| MsG0180000028.01 | MsG0380016490.01 | 0.827306 | 1.682807e-54 | 1.618431e-51 |
| MsG0180000029.01 | MsG0380016490.01 | 0.849728 | 2.683713e-60 | 5.135669e-57 |
| MsG0180000040.01 | MsG0380016490.01 | -0.837784 | 4.237003e-57 | 5.563320e-54 |
| MsG0180000466.01 | MsG0380016490.01 | 0.823904 | 1.077275e-53 | 9.398990e-51 |
| MsG0180000490.01 | MsG0380016490.01 | -0.820518 | 6.575716e-53 | 5.214297e-50 |
| MsG0180000491.01 | MsG0380016490.01 | -0.821050 | 4.961313e-53 | 3.993375e-50 |
| MsG0180000942.01 | MsG0380016490.01 | -0.814195 | 1.743589e-51 | 1.162216e-48 |
| MsG0180000976.01 | MsG0380016490.01 | -0.833350 | 5.608210e-56 | 6.442101e-53 |
| MsG0180001004.01 | MsG0380016490.01 | 0.817038 | 4.057446e-52 | 2.922688e-49 |
| MsG0180001029.01 | MsG0380016490.01 | 0.849512 | 3.082588e-60 | 5.857489e-57 |
| MsG0180002238.01 | MsG0380016490.01 | 0.829134 | 6.101894e-55 | 6.189622e-52 |
| MsG0180002404.01 | MsG0380016490.01 | 0.834235 | 3.370119e-56 | 3.974988e-53 |
| MsG0180003320.01 | MsG0380016490.01 | 0.881467 | 2.342169e-70 | 1.373860e-66 |
| MsG0180003322.01 | MsG0380016490.01 | 0.822525 | 2.261632e-53 | 1.897734e-50 |
| MsG0180003405.01 | MsG0380016490.01 | -0.826244 | 3.017355e-54 | 2.814191e-51 |
| MsG0180003504.01 | MsG0380016490.01 | 0.809090 | 2.246327e-50 | 1.306725e-47 |
| MsG0180004359.01 | MsG0380016490.01 | 0.802458 | 5.557092e-49 | 2.723556e-46 |
| MsG0180004467.01 | MsG0380016490.01 | 0.812904 | 3.352903e-51 | 2.158149e-48 |
| MsG0180004549.01 | MsG0380016490.01 | 0.838582 | 2.640461e-57 | 3.552298e-54 |
| MsG0180004792.01 | MsG0380016490.01 | -0.804283 | 2.326697e-49 | 1.194887e-46 |
| MsG0180004880.01 | MsG0380016490.01 | 0.818284 | 2.123638e-52 | 1.582849e-49 |
| MsG0180005267.01 | MsG0380016490.01 | 0.814749 | 1.314900e-51 | 8.896959e-49 |
| MsG0180005666.01 | MsG0380016490.01 | -0.815857 | 7.457972e-52 | 5.200975e-49 |
| MsG0180005898.01 | MsG0380016490.01 | -0.807067 | 6.056391e-50 | 3.340897e-47 |
| MsG0180005906.01 | MsG0380016490.01 | 0.816281 | 5.994974e-52 | 4.229998e-49 |
| MsG0180006027.01 | MsG0380016490.01 | 0.801120 | 1.045947e-48 | 4.955289e-46 |
| MsG0180006183.01 | MsG0380016490.01 | 0.809280 | 2.045615e-50 | 1.196012e-47 |
| MsG0180006195.01 | MsG0380016490.01 | 0.825427 | 4.715220e-54 | 4.296268e-51 |
| MsG0180006253.01 | MsG0380016490.01 | 0.809154 | 2.176817e-50 | 1.268451e-47 |
| MsG0280010803.01 | MsG0380016490.01 | -0.812778 | 3.571980e-51 | 2.291455e-48 |
| MsG0280011110.01 | MsG0380016490.01 | 0.839428 | 1.593821e-57 | 2.200508e-54 |
| MsG0280011128.01 | MsG0380016490.01 | 0.827800 | 1.280567e-54 | 1.249243e-51 |
| MsG0280011281.01 | MsG0380016490.01 | -0.801236 | 9.905341e-49 | 4.706450e-46 |
| MsG0280011393.01 | MsG0380016490.01 | 0.824401 | 8.233631e-54 | 7.284845e-51 |
| MsG0380012222.01 | MsG0380016490.01 | 0.835665 | 1.469854e-56 | 1.809640e-53 |
| MsG0380013263.01 | MsG0380016490.01 | 0.805744 | 1.151236e-49 | 6.139218e-47 |
| MsG0380014231.01 | MsG0380016490.01 | -0.803822 | 2.901317e-49 | 1.472473e-46 |
| MsG0380016151.01 | MsG0380016490.01 | -0.823303 | 1.489688e-53 | 1.277742e-50 |
| MsG0380016250.01 | MsG0380016490.01 | 0.820625 | 6.212319e-53 | 4.940630e-50 |
| MsG0380016299.01 | MsG0380016490.01 | 0.804737 | 1.871308e-49 | 9.724044e-47 |
| MsG0380016490.01 | MsG0380017168.01 | 0.839315 | 1.705836e-57 | 2.346797e-54 |
| MsG0380016490.01 | MsG0380017901.01 | 0.848935 | 4.462165e-60 | 8.322548e-57 |
| MsG0380016490.01 | MsG0480018337.01 | -0.818518 | 1.879959e-52 | 1.410366e-49 |
| MsG0380016490.01 | MsG0480018338.01 | -0.816636 | 4.993323e-52 | 3.557339e-49 |
| MsG0380016490.01 | MsG0480018362.01 | 0.818392 | 2.007870e-52 | 1.501129e-49 |
| MsG0380016490.01 | MsG0480018559.01 | 0.800608 | 1.330450e-48 | 6.221763e-46 |
| MsG0380016490.01 | MsG0480018658.01 | -0.810524 | 1.104569e-50 | 6.673181e-48 |
| MsG0380016490.01 | MsG0480019171.01 | 0.850580 | 1.549261e-60 | 3.048749e-57 |
| MsG0380016490.01 | MsG0480019644.01 | -0.805982 | 1.025954e-49 | 5.504545e-47 |
| MsG0380016490.01 | MsG0480019663.01 | 0.806975 | 6.334972e-50 | 3.486260e-47 |
| MsG0380016490.01 | MsG0480019817.01 | 0.846987 | 1.537067e-59 | 2.692688e-56 |
| MsG0380016490.01 | MsG0480019818.01 | 0.816334 | 5.835206e-52 | 4.123220e-49 |
| MsG0380016490.01 | MsG0480020118.01 | 0.807326 | 5.338966e-50 | 2.965124e-47 |
| MsG0380016490.01 | MsG0480020473.01 | -0.825377 | 4.846133e-54 | 4.409374e-51 |
| MsG0380016490.01 | MsG0480020797.01 | 0.825486 | 4.566949e-54 | 4.168216e-51 |
| MsG0380016490.01 | MsG0480020810.01 | 0.822472 | 2.326553e-53 | 1.949224e-50 |
| MsG0380016490.01 | MsG0480020904.01 | 0.852736 | 3.796392e-61 | 8.009494e-58 |
| MsG0380016490.01 | MsG0480021091.01 | 0.840065 | 1.087983e-57 | 1.532156e-54 |
| MsG0380016490.01 | MsG0480021227.01 | 0.810073 | 1.381612e-50 | 8.248942e-48 |
| MsG0380016490.01 | MsG0480021230.01 | 0.830428 | 2.952582e-55 | 3.109884e-52 |
| MsG0380016490.01 | MsG0480021231.01 | 0.810977 | 8.812625e-51 | 5.389753e-48 |
| MsG0380016490.01 | MsG0480021234.01 | 0.809628 | 1.722588e-50 | 1.016579e-47 |
| MsG0380016490.01 | MsG0480021967.01 | -0.812281 | 4.587729e-51 | 2.904790e-48 |
| MsG0380016490.01 | MsG0480022055.01 | 0.808119 | 3.622757e-50 | 2.054092e-47 |
| MsG0380016490.01 | MsG0480022154.01 | -0.817607 | 3.021339e-52 | 2.210440e-49 |
| MsG0380016490.01 | MsG0480022411.01 | -0.812269 | 4.615073e-51 | 2.921184e-48 |
| MsG0380016490.01 | MsG0480022458.01 | -0.807366 | 5.236307e-50 | 2.911006e-47 |
| MsG0380016490.01 | MsG0480022840.01 | 0.802531 | 5.367075e-49 | 2.635271e-46 |
| MsG0380016490.01 | MsG0480022886.01 | 0.809172 | 2.157366e-50 | 1.257739e-47 |
| MsG0380016490.01 | MsG0480023169.01 | -0.805868 | 1.084277e-49 | 5.800374e-47 |
| MsG0380016490.01 | MsG0480023466.01 | -0.806132 | 9.541359e-50 | 5.138566e-47 |
| MsG0380016490.01 | MsG0480023851.01 | -0.801563 | 8.486840e-49 | 4.065813e-46 |
| MsG0380016490.01 | MsG0580024087.01 | 0.818060 | 2.386537e-52 | 1.767863e-49 |
| MsG0380016490.01 | MsG0580024386.01 | -0.803921 | 2.767765e-49 | 1.408322e-46 |
| MsG0380016490.01 | MsG0580024980.01 | 0.852861 | 3.496652e-61 | 7.409352e-58 |
| MsG0380016490.01 | MsG0580025565.01 | -0.807739 | 4.363089e-50 | 2.449340e-47 |
| MsG0380016490.01 | MsG0580025633.01 | 0.840685 | 7.494190e-58 | 1.075676e-54 |
| MsG0380016490.01 | MsG0580026180.01 | 0.840337 | 9.240502e-58 | 1.312041e-54 |
| MsG0380016490.01 | MsG0580026521.01 | 0.865432 | 5.928992e-65 | 1.928496e-61 |
| MsG0380016490.01 | MsG0580027777.01 | 0.802360 | 5.821562e-49 | 2.846171e-46 |
| MsG0380016490.01 | MsG0580028337.01 | 0.800579 | 1.349219e-48 | 6.304810e-46 |
| MsG0380016490.01 | MsG0580029158.01 | 0.808206 | 3.471525e-50 | 1.972925e-47 |
| MsG0380016490.01 | MsG0580029937.01 | 0.807050 | 6.108974e-50 | 3.368370e-47 |
| MsG0380016490.01 | MsG0580029938.01 | 0.825766 | 3.918716e-54 | 3.605521e-51 |
| MsG0380016490.01 | MsG0580030063.01 | -0.814209 | 1.730783e-51 | 1.154115e-48 |
| MsG0380016490.01 | MsG0580030141.01 | 0.806318 | 8.720932e-50 | 4.718936e-47 |
| MsG0380016490.01 | MsG0680030296.01 | 0.823314 | 1.480918e-53 | 1.270632e-50 |
| MsG0380016490.01 | MsG0680030613.01 | 0.814260 | 1.686416e-51 | 1.126131e-48 |
| MsG0380016490.01 | MsG0680031200.01 | 0.857291 | 1.804001e-62 | 4.430093e-59 |
| MsG0380016490.01 | MsG0680032045.01 | 0.805974 | 1.029943e-49 | 5.524715e-47 |
| MsG0380016490.01 | MsG0680032932.01 | 0.838233 | 3.248396e-57 | 4.323221e-54 |
| MsG0380016490.01 | MsG0680034238.01 | 0.864762 | 9.628726e-65 | 3.057790e-61 |
| MsG0380016490.01 | MsG0680034254.01 | 0.812198 | 4.783818e-51 | 3.022096e-48 |
| MsG0380016490.01 | MsG0680034417.01 | 0.804090 | 2.552047e-49 | 1.304175e-46 |
| MsG0380016490.01 | MsG0680034418.01 | 0.803961 | 2.714747e-49 | 1.382740e-46 |
| MsG0380016490.01 | MsG0680035665.01 | -0.805110 | 1.563975e-49 | 8.204709e-47 |
| MsG0380016490.01 | MsG0780035930.01 | 0.864759 | 9.651731e-65 | 3.064724e-61 |
| MsG0380016490.01 | MsG0780036427.01 | 0.811998 | 5.287807e-51 | 3.322231e-48 |
| MsG0380016490.01 | MsG0780036472.01 | 0.809192 | 2.136351e-50 | 1.246147e-47 |
| MsG0380016490.01 | MsG0780036613.01 | -0.820254 | 7.558373e-53 | 5.950213e-50 |
| MsG0380016490.01 | MsG0780036620.01 | -0.810038 | 1.405845e-50 | 8.386209e-48 |
| MsG0380016490.01 | MsG0780036835.01 | 0.804017 | 2.642700e-49 | 1.347978e-46 |
| MsG0380016490.01 | MsG0780036839.01 | 0.811499 | 6.791895e-51 | 4.211140e-48 |
| MsG0380016490.01 | MsG0780036846.01 | -0.809825 | 1.562596e-50 | 9.269176e-48 |
| MsG0380016490.01 | MsG0780037052.01 | 0.813691 | 2.252186e-51 | 1.480883e-48 |
| MsG0380016490.01 | MsG0780037507.01 | -0.806750 | 7.067577e-50 | 3.866876e-47 |
| MsG0380016490.01 | MsG0780038318.01 | 0.826047 | 3.361794e-54 | 3.117842e-51 |
| MsG0380016490.01 | MsG0780038657.01 | 0.851801 | 7.002762e-61 | 1.433933e-57 |
| MsG0380016490.01 | MsG0780039373.01 | 0.818160 | 2.266225e-52 | 1.683359e-49 |
| MsG0380016490.01 | MsG0780040497.01 | 0.818579 | 1.820857e-52 | 1.368268e-49 |
| MsG0380016490.01 | MsG0780040560.01 | 0.808304 | 3.307765e-50 | 1.884664e-47 |
| MsG0380016490.01 | MsG0780040670.01 | 0.813563 | 2.402677e-51 | 1.574372e-48 |
| MsG0380016490.01 | MsG0780040716.01 | 0.854228 | 1.415748e-61 | 3.140474e-58 |
| MsG0380016490.01 | MsG0780040719.01 | 0.816882 | 4.396617e-52 | 3.153507e-49 |
| MsG0380016490.01 | MsG0780040783.01 | 0.804172 | 2.454194e-49 | 1.256756e-46 |
| MsG0380016490.01 | MsG0780040847.01 | 0.838465 | 2.830309e-57 | 3.794079e-54 |
| MsG0380016490.01 | MsG0780041129.01 | -0.824591 | 7.429791e-54 | 6.610828e-51 |
| MsG0380016490.01 | MsG0780041248.01 | 0.851443 | 8.847339e-61 | 1.791076e-57 |
| MsG0380016490.01 | MsG0780041560.01 | 0.809466 | 1.866229e-50 | 1.096526e-47 |
| MsG0380016490.01 | MsG0780041823.01 | 0.811602 | 6.449919e-51 | 4.009642e-48 |
| MsG0380016490.01 | MsG0880042256.01 | -0.802296 | 6.002283e-49 | 2.929701e-46 |
| MsG0380016490.01 | MsG0880042415.01 | -0.836719 | 7.936747e-57 | 1.008659e-53 |
| MsG0380016490.01 | MsG0880043056.01 | -0.816447 | 5.502988e-52 | 3.900036e-49 |
| MsG0380016490.01 | MsG0880043107.01 | -0.809460 | 1.872035e-50 | 1.099748e-47 |
| MsG0380016490.01 | MsG0880043463.01 | 0.818288 | 2.119264e-52 | 1.579764e-49 |
| MsG0380016490.01 | MsG0880043495.01 | 0.832894 | 7.285873e-56 | 8.254898e-53 |
| MsG0380016490.01 | MsG0880043550.01 | 0.815870 | 7.405700e-52 | 5.166552e-49 |
| MsG0380016490.01 | MsG0880043688.01 | 0.800998 | 1.107896e-48 | 5.232905e-46 |
| MsG0380016490.01 | MsG0880043882.01 | 0.824678 | 7.086236e-54 | 6.321125e-51 |
| MsG0380016490.01 | MsG0880044317.01 | -0.802093 | 6.606975e-49 | 3.208121e-46 |
| MsG0380016490.01 | MsG0880044626.01 | -0.812100 | 5.024412e-51 | 3.165542e-48 |
| MsG0380016490.01 | MsG0880044712.01 | 0.862208 | 5.961151e-64 | 1.731987e-60 |
| MsG0380016490.01 | MsG0880044834.01 | -0.815209 | 1.039442e-51 | 7.121077e-49 |
| MsG0380016490.01 | MsG0880045130.01 | 0.829848 | 4.091064e-55 | 4.238246e-52 |
| MsG0380016490.01 | MsG0880045423.01 | -0.827076 | 1.909669e-54 | 1.824293e-51 |
| MsG0380016490.01 | MsG0880045725.01 | 0.808364 | 3.211644e-50 | 1.832895e-47 |
| MsG0380016490.01 | MsG0880045801.01 | 0.844255 | 8.466894e-59 | 1.358986e-55 |
| MsG0380016490.01 | MsG0880046010.01 | -0.801124 | 1.043964e-48 | 4.946440e-46 |
| MsG0380016490.01 | MsG0880046080.01 | 0.806632 | 7.485881e-50 | 4.083078e-47 |
| MsG0380016490.01 | MsG0880046408.01 | -0.801551 | 8.537719e-49 | 4.088819e-46 |
| MsG0380016490.01 | MsG0880046434.01 | 0.803744 | 3.012049e-49 | 1.525589e-46 |
| MsG0380016490.01 | MsG0880046829.01 | 0.864203 | 1.439153e-64 | 4.481198e-61 |
| MsG0380016490.01 | MsG0880046870.01 | 0.849241 | 3.670139e-60 | 6.914861e-57 |
| MsG0380016490.01 | MsG0880046946.01 | 0.821536 | 3.831797e-53 | 3.125954e-50 |
| MsG0380016490.01 | MsG0880047383.01 | 0.800627 | 1.318755e-48 | 6.170100e-46 |
| MsG0380016490.01 | MsG0880047450.01 | 0.813999 | 1.925517e-51 | 1.276698e-48 |
| MsG0380016490.01 | MsG0880047704.01 | 0.816740 | 4.732824e-52 | 3.381354e-49 |
| MsG0280006546.01 | MsG0380016490.01 | 0.815211 | 1.038336e-51 | 7.113905e-49 |
| MsG0280006560.01 | MsG0380016490.01 | 0.804680 | 1.923190e-49 | 9.978262e-47 |
| MsG0280006579.01 | MsG0380016490.01 | 0.851569 | 8.149448e-61 | 1.656422e-57 |
| MsG0280007054.01 | MsG0380016490.01 | 0.807144 | 5.835373e-50 | 3.225381e-47 |
| MsG0280007199.01 | MsG0380016490.01 | 0.814170 | 1.765577e-51 | 1.176099e-48 |
| MsG0280007511.01 | MsG0380016490.01 | -0.801475 | 8.847051e-49 | 4.229034e-46 |
| MsG0280007689.01 | MsG0380016490.01 | 0.825904 | 3.633834e-54 | 3.356682e-51 |
| MsG0280007731.01 | MsG0380016490.01 | 0.820478 | 6.714781e-53 | 5.318875e-50 |
| MsG0280009432.01 | MsG0380016490.01 | 0.841299 | 5.170208e-58 | 7.563257e-55 |
| MsG0280009526.01 | MsG0380016490.01 | 0.806869 | 6.672382e-50 | 3.661885e-47 |
| MsG0280009753.01 | MsG0380016490.01 | 0.801226 | 9.951828e-49 | 4.727259e-46 |
| MsG0280009770.01 | MsG0380016490.01 | 0.810896 | 9.176366e-51 | 5.599750e-48 |
| MsG0280010253.01 | MsG0380016490.01 | -0.808035 | 3.774700e-50 | 2.135452e-47 |
| MsG0280010270.01 | MsG0380016490.01 | 0.805460 | 1.320731e-49 | 6.991473e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480023668.01 | MsG0380016490.01 | PPI |
| MsG0380016490.01 | MsG0480023668.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016490.01.T01 | MTR_3g090830 | 98.413 | 63 | 1 | 0 | 1 | 63 | 1 | 63 | 4.11e-38 | 120 |
| MsG0380016490.01.T01 | MTR_1g028610 | 76.271 | 59 | 12 | 1 | 7 | 63 | 4 | 62 | 2.39e-18 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016490.01.T01 | AT2G46330 | 63.462 | 52 | 19 | 0 | 12 | 63 | 11 | 62 | 1.02e-18 | 72.4 |
| MsG0380016490.01.T01 | AT3G61640 | 56.667 | 60 | 26 | 0 | 4 | 63 | 3 | 62 | 1.41e-17 | 69.3 |
| MsG0380016490.01.T01 | AT5G53250 | 58.182 | 55 | 23 | 0 | 9 | 63 | 9 | 63 | 2.32e-15 | 63.5 |
| MsG0380016490.01.T01 | AT5G24105 | 63.492 | 63 | 23 | 0 | 1 | 63 | 1 | 63 | 5.02e-11 | 52.4 |
Find 38 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACAAGTCTTGTAATTATT+TGG | 0.106778 | 3:-84187595 | MsG0380016490.01.T01:five_prime_UTR |
| CTGTTTCATGTGCTTCATTC+AGG | 0.175879 | 3:-84187443 | MsG0380016490.01.T01:CDS |
| CTCTCTTTGCCTTTAAAATT+AGG | 0.193691 | 3:+84186502 | None:intergenic |
| ATCTATAGATTATTGTGTTC+TGG | 0.249557 | 3:-84186371 | MsG0380016490.01.T01:three_prime_UTR |
| TGTTCTAATGCTTGTGGCTT+TGG | 0.292333 | 3:-84186605 | MsG0380016490.01.T01:CDS |
| TTCAGGGTGGTTGCCTTCCT+TGG | 0.296499 | 3:-84187426 | MsG0380016490.01.T01:CDS |
| TGTGTAGGAGAAAGATGTTC+GGG | 0.392777 | 3:+84187613 | None:intergenic |
| GATAAATTAATGAATGATAT+AGG | 0.396044 | 3:+84186576 | None:intergenic |
| AATTAAAATGAAATTCTCAT+TGG | 0.396792 | 3:+84186403 | None:intergenic |
| AATATTAAGAGAAACATATA+TGG | 0.399652 | 3:-84187466 | MsG0380016490.01.T01:exon |
| GAATATTTACCATCGCTTGT+AGG | 0.408971 | 3:+84187342 | None:intergenic |
| TGTTTCATGTGCTTCATTCA+GGG | 0.448362 | 3:-84187442 | MsG0380016490.01.T01:CDS |
| TTACCATCGCTTGTAGGAGC+AGG | 0.455603 | 3:+84187348 | None:intergenic |
| CTAAATGAGGAGTTTCTCTC+TGG | 0.478944 | 3:+84186551 | None:intergenic |
| CGTGAATTTAGAACTAAATG+AGG | 0.493233 | 3:+84186538 | None:intergenic |
| TTGTGTAGGAGAAAGATGTT+CGG | 0.508853 | 3:+84187612 | None:intergenic |
| TGAAATTCTCATTGGAGCAT+AGG | 0.513938 | 3:+84186411 | None:intergenic |
| AATAATTACAAGACTTGTGT+AGG | 0.529714 | 3:+84187598 | None:intergenic |
| AGGAGCAGGGGCAGGTGCAA+TGG | 0.532358 | 3:+84187362 | None:intergenic |
| TTATGCAACACTTATTTCTG+TGG | 0.538882 | 3:-84187397 | MsG0380016490.01.T01:CDS |
| TACCATCGCTTGTAGGAGCA+GGG | 0.542274 | 3:+84187349 | None:intergenic |
| AATGAGGAGTTTCTCTCTGG+TGG | 0.547747 | 3:+84186554 | None:intergenic |
| AAATAAGTGTTGCATAAATG+AGG | 0.548157 | 3:+84187403 | None:intergenic |
| TGCATGTGTTCTAATGCTTG+TGG | 0.551000 | 3:-84186611 | MsG0380016490.01.T01:CDS |
| TTTAGTTCTAAATTCACGAA+TGG | 0.560942 | 3:-84186533 | MsG0380016490.01.T01:three_prime_UTR |
| TCGCTTGTAGGAGCAGGGGC+AGG | 0.566771 | 3:+84187354 | None:intergenic |
| TGCATAAATGAGGCCAAGGA+AGG | 0.567934 | 3:+84187413 | None:intergenic |
| TTAGAACACATGCAATCGCT+TGG | 0.574241 | 3:+84186620 | None:intergenic |
| AAAATCAAGAGAGAAAGAGA+AGG | 0.577239 | 3:-84187525 | MsG0380016490.01.T01:five_prime_UTR |
| TGCAATCGCTTGGTCAATTG+TGG | 0.581446 | 3:+84186630 | None:intergenic |
| GTGTTGCATAAATGAGGCCA+AGG | 0.582795 | 3:+84187409 | None:intergenic |
| GCCCCTGCTCCTACAAGCGA+TGG | 0.595947 | 3:-84187351 | MsG0380016490.01.T01:intron |
| ACCATCGCTTGTAGGAGCAG+GGG | 0.636251 | 3:+84187350 | None:intergenic |
| TTCATGTCATAACAGAGAGG+AGG | 0.646835 | 3:-84186472 | MsG0380016490.01.T01:three_prime_UTR |
| TTCATGTGCTTCATTCAGGG+TGG | 0.668781 | 3:-84187439 | MsG0380016490.01.T01:CDS |
| TCATTCATGTCATAACAGAG+AGG | 0.730488 | 3:-84186475 | MsG0380016490.01.T01:three_prime_UTR |
| TAGGAGAAAGATGTTCGGGG+TGG | 0.741469 | 3:+84187617 | None:intergenic |
| GTGTAGGAGAAAGATGTTCG+GGG | 0.753463 | 3:+84187614 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATTTCATTTTAATTTAT+TGG | - | Chr3:84187561-84187580 | MsG0380016490.01.T01:five_prime_UTR | 10.0% |
| !! | AACAAATTGAAAATCAAATA+TGG | + | Chr3:84187216-84187235 | None:intergenic | 15.0% |
| !! | AATATTAAGAGAAACATATA+TGG | - | Chr3:84186492-84186511 | MsG0380016490.01.T01:three_prime_UTR | 15.0% |
| !! | AATTAAAATGAAATTCTCAT+TGG | + | Chr3:84187558-84187577 | None:intergenic | 15.0% |
| !! | GATAAATTAATGAATGATAT+AGG | + | Chr3:84187385-84187404 | None:intergenic | 15.0% |
| !! | TAATGATTATAAAACAAATG+TGG | - | Chr3:84187051-84187070 | MsG0380016490.01.T01:intron | 15.0% |
| !! | TGAAAAATAAATTAAAATGG+AGG | + | Chr3:84186732-84186751 | None:intergenic | 15.0% |
| !!! | AATCATTTCATAAATCTTTT+TGG | - | Chr3:84186926-84186945 | MsG0380016490.01.T01:intron | 15.0% |
| !!! | TTTATTTTCAGAGATTAAAT+TGG | + | Chr3:84186772-84186791 | None:intergenic | 15.0% |
| !! | AAAGTGATGAAACATTAATA+AGG | + | Chr3:84186672-84186691 | None:intergenic | 20.0% |
| !! | AAGTGATGAAACATTAATAA+GGG | + | Chr3:84186671-84186690 | None:intergenic | 20.0% |
| !! | GCTAAAAGTTAAGTAAAATT+TGG | + | Chr3:84187133-84187152 | None:intergenic | 20.0% |
| !!! | AAAACACCTTATACTTTTTA+AGG | - | Chr3:84186968-84186987 | MsG0380016490.01.T01:intron | 20.0% |
| !!! | AATTGTTGTTTATAATATGC+AGG | - | Chr3:84187303-84187322 | MsG0380016490.01.T01:intron | 20.0% |
| !!! | ATTTAGCCTTAAAAAGTATA+AGG | + | Chr3:84186977-84186996 | None:intergenic | 20.0% |
| ! | AATAATTACAAGACTTGTGT+AGG | + | Chr3:84186363-84186382 | None:intergenic | 25.0% |
| ! | ATCTATAGATTATTGTGTTC+TGG | - | Chr3:84187587-84187606 | MsG0380016490.01.T01:five_prime_UTR | 25.0% |
| ! | TAATATCCATATAAACGGTT+AGG | - | Chr3:84187076-84187095 | MsG0380016490.01.T01:intron | 25.0% |
| ! | TCTTTATGAGCATTATTGAT+AGG | - | Chr3:84187254-84187273 | MsG0380016490.01.T01:intron | 25.0% |
| ! | TGGACTAATATCCATATAAA+CGG | - | Chr3:84187071-84187090 | MsG0380016490.01.T01:intron | 25.0% |
| !! | AAATAAGTGTTGCATAAATG+AGG | + | Chr3:84186558-84186577 | None:intergenic | 25.0% |
| !! | ACACAAGTCTTGTAATTATT+TGG | - | Chr3:84186363-84186382 | MsG0380016490.01.T01:three_prime_UTR | 25.0% |
| !! | ATCAAATATGGAGATGTTTT+TGG | + | Chr3:84187204-84187223 | None:intergenic | 25.0% |
| !! | GATTAAATTGGTGATTCATT+TGG | + | Chr3:84186760-84186779 | None:intergenic | 25.0% |
| !!! | AAACTCACATATATTTTGAG+AGG | + | Chr3:84187009-84187028 | None:intergenic | 25.0% |
| !!! | AAGTTTTTAGAGAGAAAGAA+AGG | + | Chr3:84186411-84186430 | None:intergenic | 25.0% |
| !!! | CTTTCAATCACATTAGTTTT+CGG | + | Chr3:84186897-84186916 | None:intergenic | 25.0% |
| !!! | TTTAGTTCTAAATTCACGAA+TGG | - | Chr3:84187425-84187444 | MsG0380016490.01.T01:CDS | 25.0% |
| AAAATCAAGAGAGAAAGAGA+AGG | - | Chr3:84186433-84186452 | MsG0380016490.01.T01:three_prime_UTR | 30.0% | |
| GCTCATAAAGAATAATAGCA+TGG | + | Chr3:84187245-84187264 | None:intergenic | 30.0% | |
| ! | CGTGAATTTAGAACTAAATG+AGG | + | Chr3:84187423-84187442 | None:intergenic | 30.0% |
| !! | CTAATTTTAAAGGCAAAGAG+AGG | - | Chr3:84187457-84187476 | MsG0380016490.01.T01:exon | 30.0% |
| !! | CTCTCTTTGCCTTTAAAATT+AGG | + | Chr3:84187459-84187478 | None:intergenic | 30.0% |
| !! | TTATGCAACACTTATTTCTG+TGG | - | Chr3:84186561-84186580 | MsG0380016490.01.T01:three_prime_UTR | 30.0% |
| GAATATTTACCATCGCTTGT+AGG | + | Chr3:84186619-84186638 | None:intergenic | 35.0% | |
| GTTCTTCCTAACCGTTTATA+TGG | + | Chr3:84187085-84187104 | None:intergenic | 35.0% | |
| TCATTCATGTCATAACAGAG+AGG | - | Chr3:84187483-84187502 | MsG0380016490.01.T01:five_prime_UTR | 35.0% | |
| TGAAATTCTCATTGGAGCAT+AGG | + | Chr3:84187550-84187569 | None:intergenic | 35.0% | |
| TGTTTCATGTGCTTCATTCA+GGG | - | Chr3:84186516-84186535 | MsG0380016490.01.T01:three_prime_UTR | 35.0% | |
| TTGTGTAGGAGAAAGATGTT+CGG | + | Chr3:84186349-84186368 | None:intergenic | 35.0% | |
| ! | GCTACAGAGCCTAATTTTAA+AGG | - | Chr3:84187447-84187466 | MsG0380016490.01.T01:CDS | 35.0% |
| !! | GAGGAGGATGAGATTTTAAT+TGG | - | Chr3:84187502-84187521 | MsG0380016490.01.T01:five_prime_UTR | 35.0% |
| AAGATTGTTCCTACAAACCC+AGG | + | Chr3:84187107-84187126 | None:intergenic | 40.0% | |
| ATAAACGGTTAGGAAGAACC+TGG | - | Chr3:84187086-84187105 | MsG0380016490.01.T01:intron | 40.0% | |
| CTAAATGAGGAGTTTCTCTC+TGG | + | Chr3:84187410-84187429 | None:intergenic | 40.0% | |
| CTGTTTCATGTGCTTCATTC+AGG | - | Chr3:84186515-84186534 | MsG0380016490.01.T01:three_prime_UTR | 40.0% | |
| TAAACGGTTAGGAAGAACCT+GGG | - | Chr3:84187087-84187106 | MsG0380016490.01.T01:intron | 40.0% | |
| TCCCATTCCCTAGAACTAAA+GGG | - | Chr3:84187172-84187191 | MsG0380016490.01.T01:intron | 40.0% | |
| TGCATGTGTTCTAATGCTTG+TGG | - | Chr3:84187347-84187366 | MsG0380016490.01.T01:intron | 40.0% | |
| TGTGTAGGAGAAAGATGTTC+GGG | + | Chr3:84186348-84186367 | None:intergenic | 40.0% | |
| TGTTCTAATGCTTGTGGCTT+TGG | - | Chr3:84187353-84187372 | MsG0380016490.01.T01:CDS | 40.0% | |
| TTAGAACACATGCAATCGCT+TGG | + | Chr3:84187341-84187360 | None:intergenic | 40.0% | |
| TTCATGTCATAACAGAGAGG+AGG | - | Chr3:84187486-84187505 | MsG0380016490.01.T01:five_prime_UTR | 40.0% | |
| !! | AACCCTTTAGTTCTAGGGAA+TGG | + | Chr3:84187177-84187196 | None:intergenic | 40.0% |
| !! | ACCCTTTAGTTCTAGGGAAT+GGG | + | Chr3:84187176-84187195 | None:intergenic | 40.0% |
| AATGAGGAGTTTCTCTCTGG+TGG | + | Chr3:84187407-84187426 | None:intergenic | 45.0% | |
| GTCCCATTCCCTAGAACTAA+AGG | - | Chr3:84187171-84187190 | MsG0380016490.01.T01:intron | 45.0% | |
| GTGTAGGAGAAAGATGTTCG+GGG | + | Chr3:84186347-84186366 | None:intergenic | 45.0% | |
| GTGTTGCATAAATGAGGCCA+AGG | + | Chr3:84186552-84186571 | None:intergenic | 45.0% | |
| TAGGAAGAACCTGGGTTTGT+AGG | - | Chr3:84187095-84187114 | MsG0380016490.01.T01:intron | 45.0% | |
| TCCCTAGAACTAAAGGGTTG+TGG | - | Chr3:84187178-84187197 | MsG0380016490.01.T01:intron | 45.0% | |
| TGCAATCGCTTGGTCAATTG+TGG | + | Chr3:84187331-84187350 | None:intergenic | 45.0% | |
| TGCATAAATGAGGCCAAGGA+AGG | + | Chr3:84186548-84186567 | None:intergenic | 45.0% | |
| TTCATGTGCTTCATTCAGGG+TGG | - | Chr3:84186519-84186538 | MsG0380016490.01.T01:three_prime_UTR | 45.0% | |
| !! | GCCACAACCCTTTAGTTCTA+GGG | + | Chr3:84187182-84187201 | None:intergenic | 45.0% |
| !! | TAGTTCTAGGGAATGGGACA+TGG | + | Chr3:84187170-84187189 | None:intergenic | 45.0% |
| !! | TATTGAAAAATAAATTAAAA+TGG | + | Chr3:84186735-84186754 | None:intergenic | 5.0% |
| TACCATCGCTTGTAGGAGCA+GGG | + | Chr3:84186612-84186631 | None:intergenic | 50.0% | |
| TAGGAGAAAGATGTTCGGGG+TGG | + | Chr3:84186344-84186363 | None:intergenic | 50.0% | |
| TTACCATCGCTTGTAGGAGC+AGG | + | Chr3:84186613-84186632 | None:intergenic | 50.0% | |
| !! | GGCCACAACCCTTTAGTTCT+AGG | + | Chr3:84187183-84187202 | None:intergenic | 50.0% |
| ACCATCGCTTGTAGGAGCAG+GGG | + | Chr3:84186611-84186630 | None:intergenic | 55.0% | |
| TTCAGGGTGGTTGCCTTCCT+TGG | - | Chr3:84186532-84186551 | MsG0380016490.01.T01:three_prime_UTR | 55.0% | |
| AGGAGCAGGGGCAGGTGCAA+TGG | + | Chr3:84186599-84186618 | None:intergenic | 65.0% | |
| GCCCCTGCTCCTACAAGCGA+TGG | - | Chr3:84186607-84186626 | MsG0380016490.01.T01:CDS | 65.0% | |
| TCGCTTGTAGGAGCAGGGGC+AGG | + | Chr3:84186607-84186626 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 84186340 | 84187640 | 84186340 | ID=MsG0380016490.01;Name=MsG0380016490.01 |
| Chr3 | mRNA | 84186340 | 84187640 | 84186340 | ID=MsG0380016490.01.T01;Parent=MsG0380016490.01;Name=MsG0380016490.01.T01;_AED=0.49;_eAED=0.49;_QI=171|1|1|1|0|0|2|242|63 |
| Chr3 | exon | 84186340 | 84186655 | 84186340 | ID=MsG0380016490.01.T01:exon:33405;Parent=MsG0380016490.01.T01 |
| Chr3 | exon | 84187352 | 84187640 | 84187352 | ID=MsG0380016490.01.T01:exon:33404;Parent=MsG0380016490.01.T01 |
| Chr3 | five_prime_UTR | 84187470 | 84187640 | 84187470 | ID=MsG0380016490.01.T01:five_prime_utr;Parent=MsG0380016490.01.T01 |
| Chr3 | CDS | 84187352 | 84187469 | 84187352 | ID=MsG0380016490.01.T01:cds;Parent=MsG0380016490.01.T01 |
| Chr3 | CDS | 84186582 | 84186655 | 84186582 | ID=MsG0380016490.01.T01:cds;Parent=MsG0380016490.01.T01 |
| Chr3 | three_prime_UTR | 84186340 | 84186581 | 84186340 | ID=MsG0380016490.01.T01:three_prime_utr;Parent=MsG0380016490.01.T01 |
| Gene Sequence |
| Protein sequence |
