Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036835.01.T01 | XP_003621654.1 | 96.154 | 390 | 14 | 1 | 1 | 390 | 1 | 389 | 0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036835.01.T01 | O80630 | 61.765 | 238 | 87 | 4 | 156 | 389 | 82 | 319 | 1.61E-90 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036835.01.T01 | G7KSY8 | 96.154 | 390 | 14 | 1 | 1 | 390 | 1 | 389 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048506.01 | MsG0780036835.01 | 0.813000 | 3.194012e-51 | 2.061179e-48 |
| MsG0080048507.01 | MsG0780036835.01 | 0.827579 | 1.447226e-54 | 1.402758e-51 |
| MsG0180000599.01 | MsG0780036835.01 | -0.817864 | 2.643444e-52 | 1.947725e-49 |
| MsG0180000897.01 | MsG0780036835.01 | 0.810737 | 9.932124e-51 | 6.035104e-48 |
| MsG0180000942.01 | MsG0780036835.01 | -0.801581 | 8.417769e-49 | 4.034414e-46 |
| MsG0180001029.01 | MsG0780036835.01 | 0.834194 | 3.451587e-56 | 4.065710e-53 |
| MsG0180003320.01 | MsG0780036835.01 | 0.845679 | 3.494371e-59 | 5.869212e-56 |
| MsG0180003322.01 | MsG0780036835.01 | 0.822726 | 2.030558e-53 | 1.713610e-50 |
| MsG0180004880.01 | MsG0780036835.01 | 0.800226 | 1.591504e-48 | 7.370740e-46 |
| MsG0180005059.01 | MsG0780036835.01 | 0.804678 | 1.924754e-49 | 9.985833e-47 |
| MsG0180005082.01 | MsG0780036835.01 | 0.842842 | 2.019642e-58 | 3.100987e-55 |
| MsG0180005130.01 | MsG0780036835.01 | 0.828488 | 8.744340e-55 | 8.704564e-52 |
| MsG0180005143.01 | MsG0780036835.01 | 0.827747 | 1.318634e-54 | 1.284478e-51 |
| MsG0180006195.01 | MsG0780036835.01 | 0.851319 | 9.588269e-61 | 1.933500e-57 |
| MsG0280011110.01 | MsG0780036835.01 | 0.822595 | 2.178145e-53 | 1.831478e-50 |
| MsG0380014510.01 | MsG0780036835.01 | -0.809329 | 1.997156e-50 | 1.169202e-47 |
| MsG0680031200.01 | MsG0780036835.01 | 0.831942 | 1.253667e-55 | 1.381040e-52 |
| MsG0680032932.01 | MsG0780036835.01 | 0.838952 | 2.117543e-57 | 2.880972e-54 |
| MsG0680034238.01 | MsG0780036835.01 | 0.822727 | 2.029079e-53 | 1.712453e-50 |
| MsG0680034391.01 | MsG0780036835.01 | 0.819349 | 1.216818e-52 | 9.339689e-50 |
| MsG0680034980.01 | MsG0780036835.01 | 0.800027 | 1.747589e-48 | 8.052648e-46 |
| MsG0480019322.01 | MsG0780036835.01 | 0.807633 | 4.596039e-50 | 2.572874e-47 |
| MsG0480020229.01 | MsG0780036835.01 | -0.818567 | 1.832094e-52 | 1.376253e-49 |
| MsG0480020285.01 | MsG0780036835.01 | 0.833943 | 3.988117e-56 | 4.663561e-53 |
| MsG0480020898.01 | MsG0780036835.01 | 0.821919 | 3.124962e-53 | 2.577169e-50 |
| MsG0480020904.01 | MsG0780036835.01 | 0.828357 | 9.404204e-55 | 9.325242e-52 |
| MsG0480021091.01 | MsG0780036835.01 | 0.869364 | 3.271751e-66 | 1.224767e-62 |
| MsG0480023406.01 | MsG0780036835.01 | -0.806459 | 8.141535e-50 | 4.421526e-47 |
| MsG0580024535.01 | MsG0780036835.01 | 0.857243 | 1.863908e-62 | 4.570258e-59 |
| MsG0580025606.01 | MsG0780036835.01 | 0.804479 | 2.118241e-49 | 1.093296e-46 |
| MsG0380016490.01 | MsG0780036835.01 | 0.804017 | 2.642700e-49 | 1.347978e-46 |
| MsG0580026521.01 | MsG0780036835.01 | 0.814670 | 1.368814e-51 | 9.242217e-49 |
| MsG0680030465.01 | MsG0780036835.01 | 0.820562 | 6.423438e-53 | 5.099935e-50 |
| MsG0680030680.01 | MsG0780036835.01 | -0.813753 | 2.182214e-51 | 1.437262e-48 |
| MsG0280006553.01 | MsG0780036835.01 | -0.821139 | 4.732012e-53 | 3.818001e-50 |
| MsG0280007513.01 | MsG0780036835.01 | 0.852051 | 5.947251e-61 | 1.227527e-57 |
| MsG0280007689.01 | MsG0780036835.01 | 0.835496 | 1.621839e-56 | 1.986747e-53 |
| MsG0280007731.01 | MsG0780036835.01 | 0.803044 | 4.206905e-49 | 2.092703e-46 |
| MsG0280009436.01 | MsG0780036835.01 | -0.801791 | 7.620978e-49 | 3.672123e-46 |
| MsG0280009644.01 | MsG0780036835.01 | 0.803359 | 3.620184e-49 | 1.815438e-46 |
| MsG0280010270.01 | MsG0780036835.01 | 0.815458 | 9.152247e-52 | 6.313694e-49 |
| MsG0780036260.01 | MsG0780036835.01 | 0.835170 | 1.960694e-56 | 2.378433e-53 |
| MsG0780036620.01 | MsG0780036835.01 | -0.801023 | 1.094753e-48 | 5.174086e-46 |
| MsG0780036835.01 | MsG0780038318.01 | 0.824079 | 9.804339e-54 | 8.595787e-51 |
| MsG0780036835.01 | MsG0780039161.01 | -0.801835 | 7.463987e-49 | 3.600543e-46 |
| MsG0780036835.01 | MsG0780039373.01 | 0.805191 | 1.503799e-49 | 7.905538e-47 |
| MsG0780036835.01 | MsG0780039686.01 | 0.816705 | 4.819703e-52 | 3.440026e-49 |
| MsG0780036835.01 | MsG0780040716.01 | 0.801439 | 9.000464e-49 | 4.298372e-46 |
| MsG0780036835.01 | MsG0880042084.01 | -0.808471 | 3.047897e-50 | 1.744256e-47 |
| MsG0780036835.01 | MsG0880042086.01 | -0.811714 | 6.098979e-51 | 3.802730e-48 |
| MsG0780036835.01 | MsG0880042415.01 | -0.811390 | 7.171673e-51 | 4.433579e-48 |
| MsG0780036835.01 | MsG0880042416.01 | -0.822439 | 2.366916e-53 | 1.981260e-50 |
| MsG0780036835.01 | MsG0880042728.01 | 0.800083 | 1.702188e-48 | 7.854809e-46 |
| MsG0780036835.01 | MsG0880043107.01 | -0.812313 | 4.513647e-51 | 2.860332e-48 |
| MsG0780036835.01 | MsG0880044001.01 | 0.811564 | 6.572888e-51 | 4.082257e-48 |
| MsG0780036835.01 | MsG0880044028.01 | 0.824740 | 6.853100e-54 | 6.123832e-51 |
| MsG0780036835.01 | MsG0880045801.01 | 0.819611 | 1.060409e-52 | 8.199279e-50 |
| MsG0780036835.01 | MsG0880046200.01 | -0.839653 | 1.393627e-57 | 1.937227e-54 |
| MsG0780036835.01 | MsG0880046434.01 | 0.845734 | 3.375396e-59 | 5.679820e-56 |
| MsG0780036835.01 | MsG0880046946.01 | 0.847936 | 8.433660e-60 | 1.523011e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036835.01.T01 | MTR_7g021300 | 96.154 | 390 | 14 | 1 | 1 | 390 | 1 | 389 | 0.0 | 743 |
| MsG0780036835.01.T01 | MTR_1g115510 | 62.060 | 398 | 98 | 7 | 1 | 390 | 1 | 353 | 6.05e-154 | 438 |
| MsG0780036835.01.T01 | MTR_4g062460 | 45.455 | 242 | 114 | 6 | 152 | 388 | 29 | 257 | 1.27e-59 | 194 |
| MsG0780036835.01.T01 | MTR_4g062520 | 43.220 | 236 | 120 | 6 | 157 | 389 | 78 | 302 | 1.34e-43 | 154 |
| MsG0780036835.01.T01 | MTR_4g062470 | 43.220 | 236 | 119 | 6 | 157 | 389 | 80 | 303 | 1.71e-43 | 153 |
| MsG0780036835.01.T01 | MTR_1g046800 | 38.912 | 239 | 116 | 8 | 156 | 388 | 34 | 248 | 2.80e-39 | 140 |
| MsG0780036835.01.T01 | MTR_1g046500 | 36.626 | 243 | 116 | 6 | 156 | 388 | 34 | 248 | 3.81e-38 | 138 |
| MsG0780036835.01.T01 | MTR_1g046490 | 34.454 | 238 | 130 | 5 | 156 | 388 | 18 | 234 | 2.51e-34 | 127 |
| MsG0780036835.01.T01 | MTR_1g115515 | 43.443 | 122 | 63 | 2 | 268 | 387 | 114 | 231 | 1.32e-21 | 93.2 |
| MsG0780036835.01.T01 | MTR_4g122110 | 35.294 | 102 | 63 | 1 | 264 | 365 | 60 | 158 | 2.62e-12 | 65.5 |
| MsG0780036835.01.T01 | MTR_1g054525 | 31.250 | 144 | 85 | 5 | 247 | 388 | 58 | 189 | 2.03e-11 | 63.2 |
| MsG0780036835.01.T01 | MTR_4g013310 | 31.356 | 118 | 70 | 4 | 272 | 388 | 87 | 194 | 2.50e-11 | 62.8 |
| MsG0780036835.01.T01 | MTR_4g122130 | 31.624 | 117 | 74 | 3 | 250 | 365 | 47 | 158 | 2.55e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036835.01.T01 | AT2G39430 | 61.765 | 238 | 87 | 4 | 156 | 389 | 82 | 319 | 1.65e-91 | 278 |
| MsG0780036835.01.T01 | AT3G55230 | 58.898 | 236 | 93 | 4 | 158 | 389 | 67 | 302 | 1.34e-83 | 257 |
| MsG0780036835.01.T01 | AT1G07730 | 44.681 | 235 | 112 | 5 | 163 | 389 | 164 | 388 | 3.79e-52 | 179 |
| MsG0780036835.01.T01 | AT2G28670 | 45.106 | 235 | 113 | 5 | 163 | 389 | 209 | 435 | 7.11e-49 | 171 |
| MsG0780036835.01.T01 | AT2G28670 | 44.635 | 233 | 113 | 5 | 165 | 389 | 1 | 225 | 1.36e-48 | 164 |
| MsG0780036835.01.T01 | AT3G24020 | 34.894 | 235 | 133 | 5 | 154 | 388 | 27 | 241 | 2.61e-35 | 130 |
| MsG0780036835.01.T01 | AT4G13580 | 35.146 | 239 | 127 | 6 | 154 | 388 | 28 | 242 | 7.13e-35 | 129 |
| MsG0780036835.01.T01 | AT2G21100 | 40.426 | 94 | 49 | 3 | 271 | 362 | 75 | 163 | 6.36e-12 | 64.3 |
| MsG0780036835.01.T01 | AT2G21100 | 40.426 | 94 | 49 | 3 | 271 | 362 | 75 | 163 | 6.36e-12 | 64.3 |
| MsG0780036835.01.T01 | AT3G13650 | 33.051 | 118 | 71 | 4 | 271 | 384 | 73 | 186 | 4.67e-11 | 62.0 |
Find 115 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGTTGTGGAAGTTCTTC+TGG | 0.253047 | 7:-14774061 | None:intergenic |
| GGCACAAGTAACACTGTTTC+TGG | 0.257411 | 7:+14774427 | MsG0780036835.01.T01:CDS |
| GTGACAATGCCGTTGAGTTT+AGG | 0.257911 | 7:-14774337 | None:intergenic |
| AATGGAATTCCTCCAGTAAT+AGG | 0.258847 | 7:-14774307 | None:intergenic |
| TGACAATGCCGTTGAGTTTA+GGG | 0.260469 | 7:-14774336 | None:intergenic |
| GGAAGTGGCACTTCAGCTTC+TGG | 0.289945 | 7:-14774079 | None:intergenic |
| GTTTCGGCGGGTAATCTTCC+TGG | 0.290220 | 7:+14774469 | MsG0780036835.01.T01:CDS |
| AACAATCTCTTCCCTATTAC+TGG | 0.302816 | 7:+14774295 | MsG0780036835.01.T01:CDS |
| AATACTGCCACACCGATTTC+TGG | 0.303403 | 7:+14773947 | MsG0780036835.01.T01:CDS |
| GCACTTGGCGAAGCGGTAAT+AGG | 0.311234 | 7:-14773896 | None:intergenic |
| GCTCATGTTCTTCCGTTAAC+TGG | 0.330883 | 7:-14774543 | None:intergenic |
| GCTGTAACCGGCGTTGCATT+AGG | 0.347214 | 7:-14774136 | None:intergenic |
| GAAGAGATTGTTATTAAGCT+TGG | 0.351880 | 7:-14774284 | None:intergenic |
| GGCACTTCAGCTTCTGGTTG+TGG | 0.365626 | 7:-14774073 | None:intergenic |
| ATCACTGCTATCTCAGATTC+TGG | 0.369049 | 7:-14774727 | None:intergenic |
| GCCATAGGCTTTGCTGTAAC+CGG | 0.371677 | 7:-14774148 | None:intergenic |
| GATGACACTATAAGTCTGTT+TGG | 0.375198 | 7:+14774685 | MsG0780036835.01.T01:CDS |
| TTCTTCATGCATGATATCCT+TGG | 0.388666 | 7:+14774190 | MsG0780036835.01.T01:CDS |
| TAAGTCTGTTTGGGATTCAT+AGG | 0.390535 | 7:+14774695 | MsG0780036835.01.T01:CDS |
| TTGAGTTTAGGGTTAACTAA+TGG | 0.391976 | 7:-14774325 | None:intergenic |
| ATGACACTATAAGTCTGTTT+GGG | 0.400912 | 7:+14774686 | MsG0780036835.01.T01:CDS |
| GGGAGTGGTACTTCAGCTTC+TGG | 0.400931 | 7:-14774106 | None:intergenic |
| ATCTAGGATTCTTGCAGAGT+TGG | 0.403022 | 7:-14773786 | None:intergenic |
| GCACTGAGACCTACAAGGTT+TGG | 0.410828 | 7:-14774373 | None:intergenic |
| GGCAGTATTGGTGGTGGTGG+TGG | 0.410999 | 7:-14773933 | None:intergenic |
| CACTGAGACCTACAAGGTTT+GGG | 0.416021 | 7:-14774372 | None:intergenic |
| CAGAACCAAACATAAGCTTC+TGG | 0.418523 | 7:-14774504 | None:intergenic |
| TACCTTCAGTAGGTTCTCTA+TGG | 0.422239 | 7:-14774791 | None:intergenic |
| AACAATCTCCCAAACCTTGT+AGG | 0.423141 | 7:+14774364 | MsG0780036835.01.T01:CDS |
| ATGGAATTCCTCCAGTAATA+GGG | 0.425850 | 7:-14774306 | None:intergenic |
| TTCATGCATGATATCCTTGG+TGG | 0.426597 | 7:+14774193 | MsG0780036835.01.T01:CDS |
| TCAGCTTCTGGTGGTGGAAG+TGG | 0.440204 | 7:-14774094 | None:intergenic |
| GAGCTGGATTCTTCTGTGAT+AGG | 0.441022 | 7:+14774562 | MsG0780036835.01.T01:CDS |
| GGTACTTCAGCTTCTGGTGG+TGG | 0.445466 | 7:-14774100 | None:intergenic |
| TCTGGTGTTTCATCTGTGGT+AGG | 0.446439 | 7:-14774043 | None:intergenic |
| AAGTTGTGATTAGGAGGAAA+AGG | 0.462919 | 7:-14773754 | None:intergenic |
| ACAGTCCAGAAGCTTATGTT+TGG | 0.469595 | 7:+14774499 | MsG0780036835.01.T01:CDS |
| GCCGAGGGAATGGCAGCTCC+AGG | 0.470305 | 7:-14773851 | None:intergenic |
| GTTGAGAGTCAAATTCATCT+AGG | 0.473605 | 7:-14773802 | None:intergenic |
| GACTCTCAACCACAAGCTAT+AGG | 0.480463 | 7:+14773815 | MsG0780036835.01.T01:CDS |
| TAGCAGTGATTGGTGGGACT+GGG | 0.483880 | 7:+14774740 | MsG0780036835.01.T01:CDS |
| AGAAATCGGTGTGGCAGTAT+TGG | 0.487007 | 7:-14773945 | None:intergenic |
| AGTGATTGATGACCAGTTAA+CGG | 0.488842 | 7:+14774531 | MsG0780036835.01.T01:CDS |
| TTGGTATCTCCACCAGAAAT+CGG | 0.489324 | 7:-14773959 | None:intergenic |
| AACAGACTTATAGTGTCATC+AGG | 0.492488 | 7:-14774682 | None:intergenic |
| GGCGTTGCATTAGGAACAGC+CGG | 0.498749 | 7:-14774127 | None:intergenic |
| ACTGGAGGGATGTCCACAAC+TGG | 0.504552 | 7:-14774013 | None:intergenic |
| TATAGTTGTGGCCGAGGGAA+TGG | 0.507876 | 7:-14773861 | None:intergenic |
| AGATTACCCGCCGAAACAAA+AGG | 0.508321 | 7:-14774463 | None:intergenic |
| GTAGCAAACAGTGATGTAAC+CGG | 0.514157 | 7:+14774250 | MsG0780036835.01.T01:CDS |
| CTGTGGTATAGTTGTGGCCG+AGG | 0.515271 | 7:-14773867 | None:intergenic |
| TGAGACTGAAGGGTCTGGAT+TGG | 0.518006 | 7:-14773978 | None:intergenic |
| TCTGTGGTAGGACTCACAAC+TGG | 0.518334 | 7:-14774031 | None:intergenic |
| TTGTTATTAAGCTTGGAGAA+TGG | 0.519150 | 7:-14774277 | None:intergenic |
| ACCTGGAGCTGCCATTCCCT+CGG | 0.520471 | 7:+14773850 | MsG0780036835.01.T01:CDS |
| CAGCCCCATCTGTGGTGTGT+TGG | 0.521045 | 7:-14774816 | None:intergenic |
| CGGCGGGTAATCTTCCTGGT+GGG | 0.526197 | 7:+14774473 | MsG0780036835.01.T01:CDS |
| TTCTTCTGGTGTTTCATCTG+TGG | 0.526975 | 7:-14774047 | None:intergenic |
| GGAATGGCAGCTCCAGGTCC+TGG | 0.529908 | 7:-14773845 | None:intergenic |
| TGTGTTGGTCTACCTTCAGT+AGG | 0.533325 | 7:-14774801 | None:intergenic |
| GCTGCAGGTGTTATCGCACT+TGG | 0.538443 | 7:-14773911 | None:intergenic |
| GAATCTGAGATAGCAGTGAT+TGG | 0.539843 | 7:+14774730 | MsG0780036835.01.T01:CDS |
| ATAGCAGTGATTGGTGGGAC+TGG | 0.541882 | 7:+14774739 | MsG0780036835.01.T01:CDS |
| CTGAGATAGCAGTGATTGGT+GGG | 0.543629 | 7:+14774734 | MsG0780036835.01.T01:CDS |
| GCCGGTTACAGCAAAGCCTA+TGG | 0.547365 | 7:+14774147 | MsG0780036835.01.T01:CDS |
| GCATTAGGAACAGCCGGGAG+TGG | 0.551996 | 7:-14774121 | None:intergenic |
| AACGACGGCTCTTTCGCCAT+AGG | 0.560076 | 7:-14774163 | None:intergenic |
| CCATCAGCAAGAGTGGTAGC+AGG | 0.569287 | 7:+14774223 | MsG0780036835.01.T01:CDS |
| TGTGGCAGTATTGGTGGTGG+TGG | 0.569385 | 7:-14773936 | None:intergenic |
| CACGGGGCTGAGCATCATGA+TGG | 0.571570 | 7:+14774658 | MsG0780036835.01.T01:CDS |
| CCTGCTACCACTCTTGCTGA+TGG | 0.572490 | 7:-14774223 | None:intergenic |
| TACTTGGCAAGCTCATTGGA+TGG | 0.573716 | 7:+14774601 | MsG0780036835.01.T01:CDS |
| GAGCAGCACTGAGACCTACA+AGG | 0.573733 | 7:-14774378 | None:intergenic |
| TCGGCGGGTAATCTTCCTGG+TGG | 0.575082 | 7:+14774472 | MsG0780036835.01.T01:CDS |
| TAGACCAACACACCACAGAT+GGG | 0.578508 | 7:+14774812 | MsG0780036835.01.T01:CDS |
| AAGCTTGGAGAATGGTAAGC+CGG | 0.579168 | 7:-14774269 | None:intergenic |
| CGGTGTGGCAGTATTGGTGG+TGG | 0.581618 | 7:-14773939 | None:intergenic |
| GTAGACCAACACACCACAGA+TGG | 0.583033 | 7:+14774811 | MsG0780036835.01.T01:CDS |
| AATCGGTGTGGCAGTATTGG+TGG | 0.585340 | 7:-14773942 | None:intergenic |
| AGAAAATGAAGCACCAGTTG+TGG | 0.586435 | 7:+14774000 | MsG0780036835.01.T01:CDS |
| GGTAGATTGCCTATAGCTTG+TGG | 0.588861 | 7:-14773824 | None:intergenic |
| TCTGAGATAGCAGTGATTGG+TGG | 0.591085 | 7:+14774733 | MsG0780036835.01.T01:CDS |
| TTCTGGACTGTAAACCCACC+AGG | 0.593913 | 7:-14774487 | None:intergenic |
| ATAGGCAATCTACCAGGACC+TGG | 0.594353 | 7:+14773833 | MsG0780036835.01.T01:CDS |
| ACTTATCTGTGGTATAGTTG+TGG | 0.596688 | 7:-14773873 | None:intergenic |
| TACCCGCCGAAACAAAAGGT+TGG | 0.602825 | 7:-14774459 | None:intergenic |
| ATCACATCCATCAGCAAGAG+TGG | 0.602915 | 7:+14774216 | MsG0780036835.01.T01:CDS |
| CAAGCTATAGGCAATCTACC+AGG | 0.605391 | 7:+14773827 | MsG0780036835.01.T01:CDS |
| AGAAGCTGAAGTACCACTCC+CGG | 0.608709 | 7:+14774108 | MsG0780036835.01.T01:CDS |
| GGCTGTTCCTAATGCAACGC+CGG | 0.610188 | 7:+14774129 | MsG0780036835.01.T01:CDS |
| GTTAACGGAAGAACATGAGC+TGG | 0.611367 | 7:+14774546 | MsG0780036835.01.T01:CDS |
| TGTGGTATAGTTGTGGCCGA+GGG | 0.612073 | 7:-14773866 | None:intergenic |
| GATGGTGTCAGCCCCATCTG+TGG | 0.622116 | 7:-14774824 | None:intergenic |
| TCATGCACAATCCTAACACA+TGG | 0.631557 | 7:+14773717 | MsG0780036835.01.T01:CDS |
| TGTTATCGCACTTGGCGAAG+CGG | 0.635626 | 7:-14773903 | None:intergenic |
| GGGAAGTATGAGAATGCTAG+AGG | 0.638312 | 7:+14774760 | MsG0780036835.01.T01:CDS |
| TGGTAGGACTCACAACTGGA+GGG | 0.642055 | 7:-14774027 | None:intergenic |
| TTAGTTAACCCTAAACTCAA+CGG | 0.648399 | 7:+14774328 | MsG0780036835.01.T01:CDS |
| ACTGCCACACCGATTTCTGG+TGG | 0.648987 | 7:+14773950 | MsG0780036835.01.T01:CDS |
| AGGATTGTGCATGAAAACAT+TGG | 0.649060 | 7:-14773708 | None:intergenic |
| TGCCATAGAGAACCTACTGA+AGG | 0.654395 | 7:+14774789 | MsG0780036835.01.T01:CDS |
| AGTGGTACTTCAGCTTCTGG+TGG | 0.655493 | 7:-14774103 | None:intergenic |
| GTGGTAGGACTCACAACTGG+AGG | 0.657302 | 7:-14774028 | None:intergenic |
| AATCTCTTCCCTATTACTGG+AGG | 0.659877 | 7:+14774298 | MsG0780036835.01.T01:CDS |
| GCGTTGCATTAGGAACAGCC+GGG | 0.662946 | 7:-14774126 | None:intergenic |
| AGACCAACACACCACAGATG+GGG | 0.667608 | 7:+14774813 | MsG0780036835.01.T01:CDS |
| TCTGTGATAGGAAGAGCACA+AGG | 0.677760 | 7:+14774574 | MsG0780036835.01.T01:CDS |
| ACAAGTAACACTGTTTCTGG+CGG | 0.689812 | 7:+14774430 | MsG0780036835.01.T01:CDS |
| GTAGATACTGAAATGCAAGA+TGG | 0.703316 | 7:-14774842 | None:intergenic |
| CTGTGATAGGAAGAGCACAA+GGG | 0.711518 | 7:+14774575 | MsG0780036835.01.T01:CDS |
| GCGGTAATAGGACTTATCTG+TGG | 0.711972 | 7:-14773884 | None:intergenic |
| ATCTCCACCAGAAATCGGTG+TGG | 0.717515 | 7:-14773954 | None:intergenic |
| CTGATGGATGTGATCCACCA+AGG | 0.726786 | 7:-14774207 | None:intergenic |
| ACATTAGTCACTACTCAGTG+AGG | 0.730761 | 7:-14774864 | None:intergenic |
| TGCATGAAGAAAGAAAACGA+CGG | 0.769494 | 7:-14774178 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CAATCAAAAAAGTTGTGATT+AGG | - | Chr7:14773766-14773785 | None:intergenic | 25.0% |
| ATGACACTATAAGTCTGTTT+GGG | + | Chr7:14774686-14774705 | MsG0780036835.01.T01:CDS | 30.0% | |
| CACAAAAACAGTAATCACAA+TGG | - | Chr7:14774638-14774657 | None:intergenic | 30.0% | |
| TCAAAAAAGTTGTGATTAGG+AGG | - | Chr7:14773763-14773782 | None:intergenic | 30.0% | |
| TTAGTTAACCCTAAACTCAA+CGG | + | Chr7:14774328-14774347 | MsG0780036835.01.T01:CDS | 30.0% | |
| ! | GAAGAGATTGTTATTAAGCT+TGG | - | Chr7:14774287-14774306 | None:intergenic | 30.0% |
| ! | TTGAGTTTAGGGTTAACTAA+TGG | - | Chr7:14774328-14774347 | None:intergenic | 30.0% |
| ! | TTGTTATTAAGCTTGGAGAA+TGG | - | Chr7:14774280-14774299 | None:intergenic | 30.0% |
| AACAATCTCTTCCCTATTAC+TGG | + | Chr7:14774295-14774314 | MsG0780036835.01.T01:CDS | 35.0% | |
| AACAGACTTATAGTGTCATC+AGG | - | Chr7:14774685-14774704 | None:intergenic | 35.0% | |
| AAGTTGTGATTAGGAGGAAA+AGG | - | Chr7:14773757-14773776 | None:intergenic | 35.0% | |
| AATGGAATTCCTCCAGTAAT+AGG | - | Chr7:14774310-14774329 | None:intergenic | 35.0% | |
| ACTTATCTGTGGTATAGTTG+TGG | - | Chr7:14773876-14773895 | None:intergenic | 35.0% | |
| AGGATTGTGCATGAAAACAT+TGG | - | Chr7:14773711-14773730 | None:intergenic | 35.0% | |
| ATGGAATTCCTCCAGTAATA+GGG | - | Chr7:14774309-14774328 | None:intergenic | 35.0% | |
| GATGACACTATAAGTCTGTT+TGG | + | Chr7:14774685-14774704 | MsG0780036835.01.T01:CDS | 35.0% | |
| GTAGATACTGAAATGCAAGA+TGG | - | Chr7:14774845-14774864 | None:intergenic | 35.0% | |
| GTTGAGAGTCAAATTCATCT+AGG | - | Chr7:14773805-14773824 | None:intergenic | 35.0% | |
| TCGACTGTATTCAAAAACAG+TGG | + | Chr7:14774406-14774425 | MsG0780036835.01.T01:CDS | 35.0% | |
| TGCATGAAGAAAGAAAACGA+CGG | - | Chr7:14774181-14774200 | None:intergenic | 35.0% | |
| TTCTTCATGCATGATATCCT+TGG | + | Chr7:14774190-14774209 | MsG0780036835.01.T01:CDS | 35.0% | |
| ! | AGTGATTGATGACCAGTTAA+CGG | + | Chr7:14774531-14774550 | MsG0780036835.01.T01:CDS | 35.0% |
| ! | AGTGTAGTTTTCCATGTGTT+AGG | - | Chr7:14773731-14773750 | None:intergenic | 35.0% |
| ! | TAAGTCTGTTTGGGATTCAT+AGG | + | Chr7:14774695-14774714 | MsG0780036835.01.T01:CDS | 35.0% |
| !!! | ACTGTTTTTGAATACAGTCG+AGG | - | Chr7:14774407-14774426 | None:intergenic | 35.0% |
| !!! | CTTCATTTTCTGAGACTGAA+GGG | - | Chr7:14773991-14774010 | None:intergenic | 35.0% |
| !!! | GTGATTACTGTTTTTGTGCA+CGG | + | Chr7:14774640-14774659 | MsG0780036835.01.T01:CDS | 35.0% |
| !!! | TGATTACTGTTTTTGTGCAC+GGG | + | Chr7:14774641-14774660 | MsG0780036835.01.T01:CDS | 35.0% |
| AACAATCTCCCAAACCTTGT+AGG | + | Chr7:14774364-14774383 | MsG0780036835.01.T01:CDS | 40.0% | |
| AATCTCTTCCCTATTACTGG+AGG | + | Chr7:14774298-14774317 | MsG0780036835.01.T01:CDS | 40.0% | |
| ACAGTCCAGAAGCTTATGTT+TGG | + | Chr7:14774499-14774518 | MsG0780036835.01.T01:CDS | 40.0% | |
| ATCACTGCTATCTCAGATTC+TGG | - | Chr7:14774730-14774749 | None:intergenic | 40.0% | |
| CAGAACCAAACATAAGCTTC+TGG | - | Chr7:14774507-14774526 | None:intergenic | 40.0% | |
| GTAGCAAACAGTGATGTAAC+CGG | + | Chr7:14774250-14774269 | MsG0780036835.01.T01:CDS | 40.0% | |
| TACCTTCAGTAGGTTCTCTA+TGG | - | Chr7:14774794-14774813 | None:intergenic | 40.0% | |
| TCATGCACAATCCTAACACA+TGG | + | Chr7:14773717-14773736 | MsG0780036835.01.T01:CDS | 40.0% | |
| TGACAATGCCGTTGAGTTTA+GGG | - | Chr7:14774339-14774358 | None:intergenic | 40.0% | |
| TTCATGCATGATATCCTTGG+TGG | + | Chr7:14774193-14774212 | MsG0780036835.01.T01:CDS | 40.0% | |
| TTCTTCTGGTGTTTCATCTG+TGG | - | Chr7:14774050-14774069 | None:intergenic | 40.0% | |
| TTGGTATCTCCACCAGAAAT+CGG | - | Chr7:14773962-14773981 | None:intergenic | 40.0% | |
| ! | AGAAAATGAAGCACCAGTTG+TGG | + | Chr7:14774000-14774019 | MsG0780036835.01.T01:CDS | 40.0% |
| ! | ATCTAGGATTCTTGCAGAGT+TGG | - | Chr7:14773789-14773808 | None:intergenic | 40.0% |
| ! | GAATCTGAGATAGCAGTGAT+TGG | + | Chr7:14774730-14774749 | MsG0780036835.01.T01:CDS | 40.0% |
| ! | GTTTTACTTGGCAAGCTCAT+TGG | + | Chr7:14774597-14774616 | MsG0780036835.01.T01:CDS | 40.0% |
| !! | AAGAGCACAAGGGTTTTACT+TGG | + | Chr7:14774585-14774604 | MsG0780036835.01.T01:CDS | 40.0% |
| !! | ACAAGTAACACTGTTTCTGG+CGG | + | Chr7:14774430-14774449 | MsG0780036835.01.T01:CDS | 40.0% |
| !! | CGACAACCAACCTTTTGTTT+CGG | + | Chr7:14774453-14774472 | MsG0780036835.01.T01:CDS | 40.0% |
| !!! | GATTACTGTTTTTGTGCACG+GGG | + | Chr7:14774642-14774661 | MsG0780036835.01.T01:CDS | 40.0% |
| !!! | GCTTCATTTTCTGAGACTGA+AGG | - | Chr7:14773992-14774011 | None:intergenic | 40.0% |
| AAGCTTGGAGAATGGTAAGC+CGG | - | Chr7:14774272-14774291 | None:intergenic | 45.0% | |
| AGAAATCGGTGTGGCAGTAT+TGG | - | Chr7:14773948-14773967 | None:intergenic | 45.0% | |
| AGATTACCCGCCGAAACAAA+AGG | - | Chr7:14774466-14774485 | None:intergenic | 45.0% | |
| ATCACATCCATCAGCAAGAG+TGG | + | Chr7:14774216-14774235 | MsG0780036835.01.T01:CDS | 45.0% | |
| CAAGCTATAGGCAATCTACC+AGG | + | Chr7:14773827-14773846 | MsG0780036835.01.T01:CDS | 45.0% | |
| CACTGAGACCTACAAGGTTT+GGG | - | Chr7:14774375-14774394 | None:intergenic | 45.0% | |
| CTGAGATAGCAGTGATTGGT+GGG | + | Chr7:14774734-14774753 | MsG0780036835.01.T01:CDS | 45.0% | |
| GACTCTCAACCACAAGCTAT+AGG | + | Chr7:14773815-14773834 | MsG0780036835.01.T01:CDS | 45.0% | |
| GAGCTGGATTCTTCTGTGAT+AGG | + | Chr7:14774562-14774581 | MsG0780036835.01.T01:CDS | 45.0% | |
| GCGGTAATAGGACTTATCTG+TGG | - | Chr7:14773887-14773906 | None:intergenic | 45.0% | |
| GCTCATGTTCTTCCGTTAAC+TGG | - | Chr7:14774546-14774565 | None:intergenic | 45.0% | |
| GGCACAAGTAACACTGTTTC+TGG | + | Chr7:14774427-14774446 | MsG0780036835.01.T01:CDS | 45.0% | |
| GGTAGATTGCCTATAGCTTG+TGG | - | Chr7:14773827-14773846 | None:intergenic | 45.0% | |
| GTGACAATGCCGTTGAGTTT+AGG | - | Chr7:14774340-14774359 | None:intergenic | 45.0% | |
| GTTAACGGAAGAACATGAGC+TGG | + | Chr7:14774546-14774565 | MsG0780036835.01.T01:CDS | 45.0% | |
| TACTTGGCAAGCTCATTGGA+TGG | + | Chr7:14774601-14774620 | MsG0780036835.01.T01:CDS | 45.0% | |
| TAGACCAACACACCACAGAT+GGG | + | Chr7:14774812-14774831 | MsG0780036835.01.T01:CDS | 45.0% | |
| TCTGGTGTTTCATCTGTGGT+AGG | - | Chr7:14774046-14774065 | None:intergenic | 45.0% | |
| TCTGGTTGTGGAAGTTCTTC+TGG | - | Chr7:14774064-14774083 | None:intergenic | 45.0% | |
| TGCCATAGAGAACCTACTGA+AGG | + | Chr7:14774789-14774808 | MsG0780036835.01.T01:CDS | 45.0% | |
| ! | CTGTGATAGGAAGAGCACAA+GGG | + | Chr7:14774575-14774594 | MsG0780036835.01.T01:CDS | 45.0% |
| ! | GGGAAGTATGAGAATGCTAG+AGG | + | Chr7:14774760-14774779 | MsG0780036835.01.T01:CDS | 45.0% |
| ! | TCTGAGATAGCAGTGATTGG+TGG | + | Chr7:14774733-14774752 | MsG0780036835.01.T01:CDS | 45.0% |
| ! | TCTGTGATAGGAAGAGCACA+AGG | + | Chr7:14774574-14774593 | MsG0780036835.01.T01:CDS | 45.0% |
| ! | TGTGTTGGTCTACCTTCAGT+AGG | - | Chr7:14774804-14774823 | None:intergenic | 45.0% |
| !! | AACCAACCTTTTGTTTCGGC+GGG | + | Chr7:14774457-14774476 | MsG0780036835.01.T01:CDS | 45.0% |
| !! | AATACTGCCACACCGATTTC+TGG | + | Chr7:14773947-14773966 | MsG0780036835.01.T01:CDS | 45.0% |
| !! | CAACCAACCTTTTGTTTCGG+CGG | + | Chr7:14774456-14774475 | MsG0780036835.01.T01:CDS | 45.0% |
| !!! | TTTTCTGAGACTGAAGGGTC+TGG | - | Chr7:14773986-14774005 | None:intergenic | 45.0% |
| AGACCAACACACCACAGATG+GGG | + | Chr7:14774813-14774832 | MsG0780036835.01.T01:CDS | 50.0% | |
| AGTGGTACTTCAGCTTCTGG+TGG | - | Chr7:14774106-14774125 | None:intergenic | 50.0% | |
| ATAGCAGTGATTGGTGGGAC+TGG | + | Chr7:14774739-14774758 | MsG0780036835.01.T01:CDS | 50.0% | |
| ATAGGCAATCTACCAGGACC+TGG | + | Chr7:14773833-14773852 | MsG0780036835.01.T01:CDS | 50.0% | |
| ATCTCCACCAGAAATCGGTG+TGG | - | Chr7:14773957-14773976 | None:intergenic | 50.0% | |
| GCACTGAGACCTACAAGGTT+TGG | - | Chr7:14774376-14774395 | None:intergenic | 50.0% | |
| GTAGACCAACACACCACAGA+TGG | + | Chr7:14774811-14774830 | MsG0780036835.01.T01:CDS | 50.0% | |
| TACCCGCCGAAACAAAAGGT+TGG | - | Chr7:14774462-14774481 | None:intergenic | 50.0% | |
| TAGCAGTGATTGGTGGGACT+GGG | + | Chr7:14774740-14774759 | MsG0780036835.01.T01:CDS | 50.0% | |
| TATAGTTGTGGCCGAGGGAA+TGG | - | Chr7:14773864-14773883 | None:intergenic | 50.0% | |
| TCTGTGGTAGGACTCACAAC+TGG | - | Chr7:14774034-14774053 | None:intergenic | 50.0% | |
| TGAGACTGAAGGGTCTGGAT+TGG | - | Chr7:14773981-14774000 | None:intergenic | 50.0% | |
| TGGTAGGACTCACAACTGGA+GGG | - | Chr7:14774030-14774049 | None:intergenic | 50.0% | |
| TGTGGTATAGTTGTGGCCGA+GGG | - | Chr7:14773869-14773888 | None:intergenic | 50.0% | |
| TGTTATCGCACTTGGCGAAG+CGG | - | Chr7:14773906-14773925 | None:intergenic | 50.0% | |
| TTCTGGACTGTAAACCCACC+AGG | - | Chr7:14774490-14774509 | None:intergenic | 50.0% | |
| ! | AATCGGTGTGGCAGTATTGG+TGG | - | Chr7:14773945-14773964 | None:intergenic | 50.0% |
| ! | AGAAGCTGAAGTACCACTCC+CGG | + | Chr7:14774108-14774127 | MsG0780036835.01.T01:CDS | 50.0% |
| ! | CTGATGGATGTGATCCACCA+AGG | - | Chr7:14774210-14774229 | None:intergenic | 50.0% |
| ! | GCCATAGGCTTTGCTGTAAC+CGG | - | Chr7:14774151-14774170 | None:intergenic | 50.0% |
| AACGACGGCTCTTTCGCCAT+AGG | - | Chr7:14774166-14774185 | None:intergenic | 55.0% | |
| ACTGGAGGGATGTCCACAAC+TGG | - | Chr7:14774016-14774035 | None:intergenic | 55.0% | |
| CCATCAGCAAGAGTGGTAGC+AGG | + | Chr7:14774223-14774242 | MsG0780036835.01.T01:CDS | 55.0% | |
| CCTGCTACCACTCTTGCTGA+TGG | - | Chr7:14774226-14774245 | None:intergenic | 55.0% | |
| CTGTGGTATAGTTGTGGCCG+AGG | - | Chr7:14773870-14773889 | None:intergenic | 55.0% | |
| GCACTTGGCGAAGCGGTAAT+AGG | - | Chr7:14773899-14773918 | None:intergenic | 55.0% | |
| GCCGGTTACAGCAAAGCCTA+TGG | + | Chr7:14774147-14774166 | MsG0780036835.01.T01:CDS | 55.0% | |
| GCGTTGCATTAGGAACAGCC+GGG | - | Chr7:14774129-14774148 | None:intergenic | 55.0% | |
| GCTGTAACCGGCGTTGCATT+AGG | - | Chr7:14774139-14774158 | None:intergenic | 55.0% | |
| GGAAGTGGCACTTCAGCTTC+TGG | - | Chr7:14774082-14774101 | None:intergenic | 55.0% | |
| GGCGTTGCATTAGGAACAGC+CGG | - | Chr7:14774130-14774149 | None:intergenic | 55.0% | |
| GGCTGTTCCTAATGCAACGC+CGG | + | Chr7:14774129-14774148 | MsG0780036835.01.T01:CDS | 55.0% | |
| GGGAGTGGTACTTCAGCTTC+TGG | - | Chr7:14774109-14774128 | None:intergenic | 55.0% | |
| GGTACTTCAGCTTCTGGTGG+TGG | - | Chr7:14774103-14774122 | None:intergenic | 55.0% | |
| GTGGTAGGACTCACAACTGG+AGG | - | Chr7:14774031-14774050 | None:intergenic | 55.0% | |
| GTTTCGGCGGGTAATCTTCC+TGG | + | Chr7:14774469-14774488 | MsG0780036835.01.T01:CDS | 55.0% | |
| ! | GAGCAGCACTGAGACCTACA+AGG | - | Chr7:14774381-14774400 | None:intergenic | 55.0% |
| ! | GCTGCAGGTGTTATCGCACT+TGG | - | Chr7:14773914-14773933 | None:intergenic | 55.0% |
| ! | GGCACTTCAGCTTCTGGTTG+TGG | - | Chr7:14774076-14774095 | None:intergenic | 55.0% |
| !! | ACTGCCACACCGATTTCTGG+TGG | + | Chr7:14773950-14773969 | MsG0780036835.01.T01:CDS | 55.0% |
| !! | TCAGCTTCTGGTGGTGGAAG+TGG | - | Chr7:14774097-14774116 | None:intergenic | 55.0% |
| !! | TGTGGCAGTATTGGTGGTGG+TGG | - | Chr7:14773939-14773958 | None:intergenic | 55.0% |
| ACCTGGAGCTGCCATTCCCT+CGG | + | Chr7:14773850-14773869 | MsG0780036835.01.T01:CDS | 60.0% | |
| CACGGGGCTGAGCATCATGA+TGG | + | Chr7:14774658-14774677 | MsG0780036835.01.T01:CDS | 60.0% | |
| CAGCCCCATCTGTGGTGTGT+TGG | - | Chr7:14774819-14774838 | None:intergenic | 60.0% | |
| CGGCGGGTAATCTTCCTGGT+GGG | + | Chr7:14774473-14774492 | MsG0780036835.01.T01:CDS | 60.0% | |
| GCATTAGGAACAGCCGGGAG+TGG | - | Chr7:14774124-14774143 | None:intergenic | 60.0% | |
| TCGGCGGGTAATCTTCCTGG+TGG | + | Chr7:14774472-14774491 | MsG0780036835.01.T01:CDS | 60.0% | |
| ! | GATGGTGTCAGCCCCATCTG+TGG | - | Chr7:14774827-14774846 | None:intergenic | 60.0% |
| !! | CGGTGTGGCAGTATTGGTGG+TGG | - | Chr7:14773942-14773961 | None:intergenic | 60.0% |
| !! | GGCAGTATTGGTGGTGGTGG+TGG | - | Chr7:14773936-14773955 | None:intergenic | 60.0% |
| GGAATGGCAGCTCCAGGTCC+TGG | - | Chr7:14773848-14773867 | None:intergenic | 65.0% | |
| !! | TTGGTGGTGGTGGTGGCTGC+AGG | - | Chr7:14773929-14773948 | None:intergenic | 65.0% |
| GCCGAGGGAATGGCAGCTCC+AGG | - | Chr7:14773854-14773873 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 14773704 | 14774876 | 14773704 | ID=MsG0780036835.01;Name=MsG0780036835.01 |
| Chr7 | mRNA | 14773704 | 14774876 | 14773704 | ID=MsG0780036835.01.T01;Parent=MsG0780036835.01;Name=MsG0780036835.01.T01;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|390 |
| Chr7 | exon | 14773704 | 14774876 | 14773704 | ID=MsG0780036835.01.T01:exon:2940;Parent=MsG0780036835.01.T01 |
| Chr7 | CDS | 14773704 | 14774876 | 14773704 | ID=MsG0780036835.01.T01:cds;Parent=MsG0780036835.01.T01 |
| Gene Sequence |
| Protein sequence |
