AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008603.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008603.01.T01 MTR_2g045490 81.139 281 13 5 2 254 1 269 2.08e-155 434
MsG0280008603.01.T01 MTR_2g045490 81.139 281 13 5 2 254 1 269 2.24e-155 435
MsG0280008603.01.T01 MTR_2g045490 81.655 278 11 5 5 254 86 351 6.23e-155 436
MsG0280008603.01.T01 MTR_2g045490 82.182 275 9 5 5 251 86 348 1.34e-154 436
MsG0280008603.01.T01 MTR_2g045490 81.655 278 11 5 5 254 86 351 1.44e-154 436
MsG0280008603.01.T01 MTR_2g045490 82.745 255 9 4 28 254 1 248 3.54e-144 406
MsG0280008603.01.T01 MTR_7g024460 69.892 279 43 6 5 254 94 360 1.16e-129 374
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008603.01.T01 AT3G06483 63.406 276 62 6 5 254 86 348 2.26e-114 334

Find 73 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAACAAAGGTTACCTTTA+TGG 0.120523 2:+34749583 None:intergenic
CGTCTATATGCTCGGTATTT+TGG 0.198289 2:-34749328 MsG0280008603.01.T01:CDS
ATCAGCAACTATTATTCTTA+TGG 0.199738 2:+34749622 None:intergenic
AAATCTTGATTAATAATCTT+TGG 0.200792 2:+34750241 None:intergenic
AGAGCCATTGCCTTGAAATT+AGG 0.248931 2:-34748383 MsG0280008603.01.T01:CDS
GTCCTTGTTTAGAATGAATA+AGG 0.251737 2:-34748182 MsG0280008603.01.T01:three_prime_UTR
AATAATCTCTATGGAAATTA+TGG 0.256222 2:-34749293 MsG0280008603.01.T01:intron
TCCAGCTCACTTGCATCTTA+TGG 0.267701 2:-34749717 MsG0280008603.01.T01:CDS
AATAAGGAAATTGATGTATA+TGG 0.310097 2:-34748166 MsG0280008603.01.T01:three_prime_UTR
TCAGCAACTATTATTCTTAT+GGG 0.330890 2:+34749623 None:intergenic
AAAATAGATATGTTTACAAT+AGG 0.331665 2:-34749745 MsG0280008603.01.T01:intron
ACGACATGAGGAGGAGGATT+TGG 0.339129 2:+34750022 None:intergenic
AATCTTGATTAATAATCTTT+GGG 0.339663 2:+34750242 None:intergenic
TCTATATGCTCTCGTCAATA+TGG 0.352011 2:-34749935 MsG0280008603.01.T01:CDS
CGATCTTCAAATAATCTCTA+TGG 0.354928 2:-34749302 MsG0280008603.01.T01:CDS
CGAGCATATAGACGACTAAT+AGG 0.357508 2:+34749337 None:intergenic
ATCGGAATCCGAATGCTTAT+AGG 0.370497 2:-34750178 MsG0280008603.01.T01:intron
TATCTACATCTGTCACGTTT+GGG 0.396902 2:-34748415 MsG0280008603.01.T01:CDS
TTATCTACATCTGTCACGTT+TGG 0.410428 2:-34748416 MsG0280008603.01.T01:CDS
TTGGATGAGCATGCCGATCT+TGG 0.411149 2:-34749403 MsG0280008603.01.T01:CDS
GCCCCTGACGTACATATATA+CGG 0.411708 2:-34749908 MsG0280008603.01.T01:CDS
AAGTTACACTGATGGTTCAT+TGG 0.414500 2:+34748108 None:intergenic
TGTAGGTTAGAGTTGGTACT+TGG 0.421085 2:-34750415 MsG0280008603.01.T01:intron
AATAGTTGCTGATGGATTAG+AGG 0.424802 2:-34749612 MsG0280008603.01.T01:CDS
ACAATGGCTGGATATGGATA+TGG 0.434648 2:-34749364 MsG0280008603.01.T01:CDS
TAAACTGGGTATGATGCTCT+TGG 0.448277 2:-34750551 None:intergenic
ATTAGAGGATGTTACCATAA+AGG 0.451488 2:-34749597 MsG0280008603.01.T01:intron
AATGTGACAATGGCTGGATA+TGG 0.453217 2:-34749370 MsG0280008603.01.T01:CDS
GCATCTTATGGTATTTGAGT+TGG 0.457285 2:-34749705 MsG0280008603.01.T01:CDS
TCGCCGTATATATGTACGTC+AGG 0.457500 2:+34749905 None:intergenic
AAGTAAACAACCTAATTTCA+AGG 0.472287 2:+34748373 None:intergenic
ACTATTATTCTTATGGGAGG+TGG 0.487057 2:+34749629 None:intergenic
ACTCACGGAAAAGTAAAATC+AGG 0.492192 2:+34749881 None:intergenic
GGCGATAATGTGACAATGGC+TGG 0.493309 2:-34749376 MsG0280008603.01.T01:CDS
TGATGCTCTTGGATTGGCGT+AGG 0.500898 2:-34750540 MsG0280008603.01.T01:intron
ACCATAAGATGCAAGTGAGC+TGG 0.502479 2:+34749716 None:intergenic
TATGGGAGGTGGATCATTGT+CGG 0.504518 2:+34749640 None:intergenic
ACTTATCAGTCACACTCAAA+AGG 0.505054 2:-34748350 MsG0280008603.01.T01:CDS
TGAACACCTAAGGCCATTGT+AGG 0.507319 2:+34750286 None:intergenic
GGAACTAACCTATAAGCATT+CGG 0.507924 2:+34750170 None:intergenic
GTGGTACCTACAATGGCCTT+AGG 0.513887 2:-34750292 MsG0280008603.01.T01:CDS
TTTCAACTGCTGAACACCTA+AGG 0.517968 2:+34750276 None:intergenic
ATAGTACTGCTAGAATCCAT+TGG 0.522278 2:-34749422 MsG0280008603.01.T01:intron
GCATTCCTTGCTACCTCCAC+CGG 0.529975 2:+34749974 None:intergenic
TTTCAGGACCACATAGAGAT+GGG 0.530298 2:+34748140 None:intergenic
CTATTAGTCGTCTATATGCT+CGG 0.538691 2:-34749336 MsG0280008603.01.T01:CDS
TATAGAGCGTGCATCGTCAA+CGG 0.545656 2:+34749952 None:intergenic
ACAACCTAATTTCAAGGCAA+TGG 0.547627 2:+34748379 None:intergenic
TATTGCAGTAAGAGAATGAA+AGG 0.550689 2:-34748057 MsG0280008603.01.T01:three_prime_UTR
TACAAGAATGTCTCCGGTGG+AGG 0.553472 2:-34749987 MsG0280008603.01.T01:CDS
TATACATACAAGAATGTCTC+CGG 0.557684 2:-34749993 MsG0280008603.01.T01:CDS
GAGCATGCCGATCTTGGAGT+TGG 0.560266 2:-34749397 MsG0280008603.01.T01:CDS
ATTATCGCCAACTCCAAGAT+CGG 0.563220 2:+34749390 None:intergenic
TGGGTATGATGCTCTTGGAT+TGG 0.563907 2:-34750546 None:intergenic
TTCCTTATTCATTCTAAACA+AGG 0.567885 2:+34748180 None:intergenic
ATAAGAATAATAGTTGCTGA+TGG 0.570973 2:-34749620 MsG0280008603.01.T01:CDS
AGATCGGCATGCTCATCCAA+TGG 0.584157 2:+34749406 None:intergenic
TGTCTCCGGTGGAGGTAGCA+AGG 0.587639 2:-34749979 MsG0280008603.01.T01:CDS
CGCCGTATATATGTACGTCA+GGG 0.587762 2:+34749906 None:intergenic
CATTAAAGAAAGAACGTGGT+AGG 0.599986 2:-34748315 MsG0280008603.01.T01:exon
GCAACTATTATTCTTATGGG+AGG 0.606741 2:+34749626 None:intergenic
CAACAATGTGGTACCTACAA+TGG 0.612377 2:-34750299 MsG0280008603.01.T01:CDS
AATCCTCCTCCTCATGTCGT+AGG 0.616981 2:-34750019 MsG0280008603.01.T01:CDS
TAACCTACGACATGAGGAGG+AGG 0.635529 2:+34750016 None:intergenic
TATGGAGACCCATCTCTATG+TGG 0.636629 2:-34748148 MsG0280008603.01.T01:three_prime_UTR
TGTATATAACCTACGACATG+AGG 0.637267 2:+34750010 None:intergenic
CAGAAAAGGATCTAATATCG+CGG 0.669135 2:+34750386 None:intergenic
ACATACAAGAATGTCTCCGG+TGG 0.674423 2:-34749990 MsG0280008603.01.T01:CDS
ATATAACCTACGACATGAGG+AGG 0.678302 2:+34750013 None:intergenic
GCCGTATATATGTACGTCAG+GGG 0.698307 2:+34749907 None:intergenic
AGTTGGCGATAATGTGACAA+TGG 0.719596 2:-34749380 MsG0280008603.01.T01:CDS
AAAAGTGAGACACAACAATG+TGG 0.724994 2:-34750311 MsG0280008603.01.T01:CDS
GCAACATTAAAGAAAGAACG+TGG 0.766549 2:-34748319 MsG0280008603.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGATATGTTTACAAT+AGG - Chr2:34748843-34748862 MsG0280008603.01.T01:intron 15.0%
!! AAATCTTGATTAATAATCTT+TGG + Chr2:34748350-34748369 None:intergenic 15.0%
!! AATCTTGATTAATAATCTTT+GGG + Chr2:34748349-34748368 None:intergenic 15.0%
!! ATAAATATCATTCTTTCTTT+AGG - Chr2:34749690-34749709 MsG0280008603.01.T01:CDS 15.0%
!! GAAAATCACATTAAAAAAAA+AGG - Chr2:34750295-34750314 MsG0280008603.01.T01:CDS 15.0%
!! AACATAAACAAATGAATTCA+TGG + Chr2:34748749-34748768 None:intergenic 20.0%
!! AATAAGGAAATTGATGTATA+TGG - Chr2:34750422-34750441 MsG0280008603.01.T01:intron 20.0%
!! AATAATCTCTATGGAAATTA+TGG - Chr2:34749295-34749314 MsG0280008603.01.T01:CDS 20.0%
!!! ATTTGTTTATGTTTTATGCT+AGG - Chr2:34748756-34748775 MsG0280008603.01.T01:intron 20.0%
!!! CATAAGATTGTTTTTAGTAA+AGG - Chr2:34750384-34750403 MsG0280008603.01.T01:CDS 20.0%
! AAATGAAAAACCGCATAATA+AGG + Chr2:34748510-34748529 None:intergenic 25.0%
! AAGTAAACAACCTAATTTCA+AGG + Chr2:34750218-34750237 None:intergenic 25.0%
! AAGTATTCTGATATGATCTT+TGG - Chr2:34750128-34750147 MsG0280008603.01.T01:intron 25.0%
! ATAAGAATAATAGTTGCTGA+TGG - Chr2:34748968-34748987 MsG0280008603.01.T01:intron 25.0%
! ATAATCACTTTATCCAAACA+GGG - Chr2:34750006-34750025 MsG0280008603.01.T01:CDS 25.0%
! ATCAGCAACTATTATTCTTA+TGG + Chr2:34748969-34748988 None:intergenic 25.0%
! CAAAAACATGAATGATGAAA+AGG - Chr2:34748229-34748248 MsG0280008603.01.T01:three_prime_UTR 25.0%
! TATAATGTATTGCCAAATAG+TGG + Chr2:34749434-34749453 None:intergenic 25.0%
! TATTCTTGTAGAAGTTCAAA+AGG + Chr2:34749646-34749665 None:intergenic 25.0%
! TCAGCAACTATTATTCTTAT+GGG + Chr2:34748968-34748987 None:intergenic 25.0%
! TTCCTTATTCATTCTAAACA+AGG + Chr2:34750411-34750430 None:intergenic 25.0%
!! AGTAAAAAGTATGTAACTCA+CGG + Chr2:34748725-34748744 None:intergenic 25.0%
!! TTGATAACAATGGATACAAA+AGG + Chr2:34749359-34749378 None:intergenic 25.0%
!!! TCATTGGATTTGATTTTTTC+AGG + Chr2:34750467-34750486 None:intergenic 25.0%
!!! TTATGTATCAGCTATTTTAG+AGG + Chr2:34749960-34749979 None:intergenic 25.0%
!!! TTTCATTTTTGTTGGATTCA+GGG - Chr2:34748522-34748541 MsG0280008603.01.T01:intron 25.0%
!!! TTTTCATTTTTGTTGGATTC+AGG - Chr2:34748521-34748540 MsG0280008603.01.T01:intron 25.0%
!!! TTTTTCGTTTTAAATCTGTG+TGG - Chr2:34748466-34748485 MsG0280008603.01.T01:intron 25.0%
AAAAAAAAAGGACCATGTGT+TGG - Chr2:34750307-34750326 MsG0280008603.01.T01:CDS 30.0%
AAAACCGCATAATAAGGTAA+CGG + Chr2:34748504-34748523 None:intergenic 30.0%
ACAACTTATAACACGTTCAT+AGG - Chr2:34749860-34749879 MsG0280008603.01.T01:intron 30.0%
ATGAAAAAAATGCCAACACA+TGG + Chr2:34750322-34750341 None:intergenic 30.0%
ATTAGAGGATGTTACCATAA+AGG - Chr2:34748991-34749010 MsG0280008603.01.T01:intron 30.0%
CATAATCACTTTATCCAAAC+AGG - Chr2:34750005-34750024 MsG0280008603.01.T01:CDS 30.0%
CGATCTTCAAATAATCTCTA+TGG - Chr2:34749286-34749305 MsG0280008603.01.T01:intron 30.0%
CTAATTGGCATTGTAGATTT+CGG - Chr2:34749090-34749109 MsG0280008603.01.T01:intron 30.0%
GTTAACAAAGGTTACCTTTA+TGG + Chr2:34749008-34749027 None:intergenic 30.0%
TAACGTATTGCGTAACAATA+AGG - Chr2:34749465-34749484 MsG0280008603.01.T01:intron 30.0%
TACAAACAGTTGTCAAACAA+CGG + Chr2:34749526-34749545 None:intergenic 30.0%
TATACATACAAGAATGTCTC+CGG - Chr2:34748595-34748614 MsG0280008603.01.T01:intron 30.0%
TATTGCAGTAAGAGAATGAA+AGG - Chr2:34750531-34750550 MsG0280008603.01.T01:intron 30.0%
TGAAAAAGAAGTTACACTGA+TGG + Chr2:34750491-34750510 None:intergenic 30.0%
TGAATCCAAACAAGACTTAT+TGG + Chr2:34749779-34749798 None:intergenic 30.0%
TGATTCTTTGTTAAAGCAGT+TGG - Chr2:34749066-34749085 MsG0280008603.01.T01:intron 30.0%
TGCAGAAAATTAAACAGTCA+AGG + Chr2:34748442-34748461 None:intergenic 30.0%
TGCATCATAAAGGTTAACAA+AGG + Chr2:34749020-34749039 None:intergenic 30.0%
TGTTAACCTTTATGATGCAT+CGG - Chr2:34749021-34749040 MsG0280008603.01.T01:intron 30.0%
TTATACAATATGACCCTGTT+TGG + Chr2:34750022-34750041 None:intergenic 30.0%
! ATGATCTTTGGTTTCTTTGT+AGG - Chr2:34750140-34750159 MsG0280008603.01.T01:intron 30.0%
! GTCCTTGTTTAGAATGAATA+AGG - Chr2:34750406-34750425 MsG0280008603.01.T01:CDS 30.0%
! TCGTTTTACATGTCAAGAAT+CGG - Chr2:34748392-34748411 MsG0280008603.01.T01:CDS 30.0%
! TGATCTTTGGTTTCTTTGTA+GGG - Chr2:34750141-34750160 MsG0280008603.01.T01:intron 30.0%
! TTTATGTTTTATGCTAGGAG+TGG - Chr2:34748761-34748780 MsG0280008603.01.T01:intron 30.0%
!! AGGTTTTAACATGTGCTATA+TGG - Chr2:34748068-34748087 MsG0280008603.01.T01:three_prime_UTR 30.0%
!! ATCAGCTATTTTAGAGGAAA+AGG + Chr2:34749954-34749973 None:intergenic 30.0%
!! ATGCGGTTTTTCATTTTTGT+TGG - Chr2:34748514-34748533 MsG0280008603.01.T01:intron 30.0%
!! ATTCTTTCTTTAGGACTTTG+TGG - Chr2:34749699-34749718 MsG0280008603.01.T01:CDS 30.0%
!! ATTGTTGTGTCTCACTTTTA+TGG + Chr2:34748276-34748295 None:intergenic 30.0%
!! CATGTTTTTGATCTCAGAAA+AGG + Chr2:34748219-34748238 None:intergenic 30.0%
!! TGTGCTACATTTTTGATTGT+AGG - Chr2:34748156-34748175 MsG0280008603.01.T01:three_prime_UTR 30.0%
!! TTCTTTCTTTAGGACTTTGT+GGG - Chr2:34749700-34749719 MsG0280008603.01.T01:CDS 30.0%
!! TTTTGATTGTAGGTTAGAGT+TGG - Chr2:34748166-34748185 MsG0280008603.01.T01:three_prime_UTR 30.0%
!!! ATATGGTATTTTAGCGACAT+AGG - Chr2:34748085-34748104 MsG0280008603.01.T01:three_prime_UTR 30.0%
AAAAGTGAGACACAACAATG+TGG - Chr2:34748277-34748296 MsG0280008603.01.T01:three_prime_UTR 35.0%
AAAGAACCGATGCATCATAA+AGG + Chr2:34749030-34749049 None:intergenic 35.0%
AAGTTACACTGATGGTTCAT+TGG + Chr2:34750483-34750502 None:intergenic 35.0%
AATCTCACTCCTTTATGCTA+AGG + Chr2:34749558-34749577 None:intergenic 35.0%
ACAACCTAATTTCAAGGCAA+TGG + Chr2:34750212-34750231 None:intergenic 35.0%
ACTATTATTCTTATGGGAGG+TGG + Chr2:34748962-34748981 None:intergenic 35.0%
ACTCACGGAAAAGTAAAATC+AGG + Chr2:34748710-34748729 None:intergenic 35.0%
ACTTATCAGTCACACTCAAA+AGG - Chr2:34750238-34750257 MsG0280008603.01.T01:CDS 35.0%
ATAGTACTGCTAGAATCCAT+TGG - Chr2:34749166-34749185 MsG0280008603.01.T01:intron 35.0%
ATCCATTGTTATCAATCGTG+TGG - Chr2:34749364-34749383 MsG0280008603.01.T01:CDS 35.0%
ATCTCACTCCTTTATGCTAA+GGG + Chr2:34749557-34749576 None:intergenic 35.0%
CACTATAAACGATTGTGTAG+CGG + Chr2:34749402-34749421 None:intergenic 35.0%
CAGAAAAGGATCTAATATCG+CGG + Chr2:34748205-34748224 None:intergenic 35.0%
CATTAAAGAAAGAACGTGGT+AGG - Chr2:34750273-34750292 MsG0280008603.01.T01:CDS 35.0%
CTATTAGTCGTCTATATGCT+CGG - Chr2:34749252-34749271 MsG0280008603.01.T01:intron 35.0%
CTGATACATAAGCACGTTTA+CGG - Chr2:34749969-34749988 MsG0280008603.01.T01:CDS 35.0%
GCAACATTAAAGAAAGAACG+TGG - Chr2:34750269-34750288 MsG0280008603.01.T01:CDS 35.0%
GCAACTATTATTCTTATGGG+AGG + Chr2:34748965-34748984 None:intergenic 35.0%
GCATCTTATGGTATTTGAGT+TGG - Chr2:34748883-34748902 MsG0280008603.01.T01:intron 35.0%
GGAACTAACCTATAAGCATT+CGG + Chr2:34748421-34748440 None:intergenic 35.0%
TACACCGTTACCTTATTATG+CGG - Chr2:34748497-34748516 MsG0280008603.01.T01:intron 35.0%
TATCTACATCTGTCACGTTT+GGG - Chr2:34750173-34750192 MsG0280008603.01.T01:intron 35.0%
TCAGCAGTTGAAAAAAGATG+TGG - Chr2:34748322-34748341 MsG0280008603.01.T01:exon 35.0%
TCTATATGCTCTCGTCAATA+TGG - Chr2:34748653-34748672 MsG0280008603.01.T01:intron 35.0%
TCTATTCTCCCTTAGCATAA+AGG - Chr2:34749546-34749565 MsG0280008603.01.T01:intron 35.0%
TGTATATAACCTACGACATG+AGG + Chr2:34748581-34748600 None:intergenic 35.0%
TTATCTACATCTGTCACGTT+TGG - Chr2:34750172-34750191 MsG0280008603.01.T01:intron 35.0%
! GTGCTGTTATAACCACTATT+TGG - Chr2:34749419-34749438 MsG0280008603.01.T01:intron 35.0%
! GTTAAAGCAGTTGGTCTAAT+TGG - Chr2:34749075-34749094 MsG0280008603.01.T01:intron 35.0%
!! AATAGTTGCTGATGGATTAG+AGG - Chr2:34748976-34748995 MsG0280008603.01.T01:intron 35.0%
!! TCTTGCCAATAAGTCTTGTT+TGG - Chr2:34749771-34749790 MsG0280008603.01.T01:intron 35.0%
AATGTGACAATGGCTGGATA+TGG - Chr2:34749218-34749237 MsG0280008603.01.T01:intron 40.0%
ACAATGGCTGGATATGGATA+TGG - Chr2:34749224-34749243 MsG0280008603.01.T01:intron 40.0%
AGAGCCATTGCCTTGAAATT+AGG - Chr2:34750205-34750224 MsG0280008603.01.T01:CDS 40.0%
AGTTGGCGATAATGTGACAA+TGG - Chr2:34749208-34749227 MsG0280008603.01.T01:intron 40.0%
ATATAACCTACGACATGAGG+AGG + Chr2:34748578-34748597 None:intergenic 40.0%
ATCGGAATCCGAATGCTTAT+AGG - Chr2:34748410-34748429 MsG0280008603.01.T01:CDS 40.0%
ATTATCGCCAACTCCAAGAT+CGG + Chr2:34749201-34749220 None:intergenic 40.0%
CAACAATGTGGTACCTACAA+TGG - Chr2:34748289-34748308 MsG0280008603.01.T01:three_prime_UTR 40.0%
CAGTTGTCAAACAACGGTTA+TGG + Chr2:34749520-34749539 None:intergenic 40.0%
CGAGCATATAGACGACTAAT+AGG + Chr2:34749254-34749273 None:intergenic 40.0%
GCATTGTAGATTTCGGATGA+GGG - Chr2:34749097-34749116 MsG0280008603.01.T01:intron 40.0%
TTTCAACTGCTGAACACCTA+AGG + Chr2:34748315-34748334 None:intergenic 40.0%
TTTCAGGACCACATAGAGAT+GGG + Chr2:34750451-34750470 None:intergenic 40.0%
! AGCCACACGATTGATAACAA+TGG + Chr2:34749369-34749388 None:intergenic 40.0%
! CGTCTATATGCTCGGTATTT+TGG - Chr2:34749260-34749279 MsG0280008603.01.T01:intron 40.0%
! TTGTGGGTTCTATTTTGCTG+AGG - Chr2:34749716-34749735 MsG0280008603.01.T01:CDS 40.0%
! TTTTAGCGACATAGGCAGAA+TGG - Chr2:34748093-34748112 MsG0280008603.01.T01:three_prime_UTR 40.0%
!! CTATATGCTCGGTATTTTGG+TGG - Chr2:34749263-34749282 MsG0280008603.01.T01:intron 40.0%
!! TGTAGGTTAGAGTTGGTACT+TGG - Chr2:34748173-34748192 MsG0280008603.01.T01:three_prime_UTR 40.0%
!! TTTTCAGGACCACATAGAGA+TGG + Chr2:34750452-34750471 None:intergenic 40.0%
ACATACAAGAATGTCTCCGG+TGG - Chr2:34748598-34748617 MsG0280008603.01.T01:intron 45.0%
ACCATAAGATGCAAGTGAGC+TGG + Chr2:34748875-34748894 None:intergenic 45.0%
ATCTTTCGCAGACCACTTCT+TGG + Chr2:34749133-34749152 None:intergenic 45.0%
CGCCGTATATATGTACGTCA+GGG + Chr2:34748685-34748704 None:intergenic 45.0%
GCCCCTGACGTACATATATA+CGG - Chr2:34748680-34748699 MsG0280008603.01.T01:intron 45.0%
GCCGTATATATGTACGTCAG+GGG + Chr2:34748684-34748703 None:intergenic 45.0%
GGCATTGTAGATTTCGGATG+AGG - Chr2:34749096-34749115 MsG0280008603.01.T01:intron 45.0%
TATAGAGCGTGCATCGTCAA+CGG + Chr2:34748639-34748658 None:intergenic 45.0%
TATGGAGACCCATCTCTATG+TGG - Chr2:34750440-34750459 MsG0280008603.01.T01:intron 45.0%
TATGGGAGGTGGATCATTGT+CGG + Chr2:34748951-34748970 None:intergenic 45.0%
TCCAGCTCACTTGCATCTTA+TGG - Chr2:34748871-34748890 MsG0280008603.01.T01:intron 45.0%
TCGCCGTATATATGTACGTC+AGG + Chr2:34748686-34748705 None:intergenic 45.0%
TGAACACCTAAGGCCATTGT+AGG + Chr2:34748305-34748324 None:intergenic 45.0%
TTGTAGATTTCGGATGAGGG+AGG - Chr2:34749100-34749119 MsG0280008603.01.T01:intron 45.0%
AATCCTCCTCCTCATGTCGT+AGG - Chr2:34748569-34748588 MsG0280008603.01.T01:intron 50.0%
ACGACATGAGGAGGAGGATT+TGG + Chr2:34748569-34748588 None:intergenic 50.0%
AGATCGGCATGCTCATCCAA+TGG + Chr2:34749185-34749204 None:intergenic 50.0%
GGAGGTGGAATACCAAGAAG+TGG - Chr2:34749118-34749137 MsG0280008603.01.T01:intron 50.0%
GGCGATAATGTGACAATGGC+TGG - Chr2:34749212-34749231 MsG0280008603.01.T01:intron 50.0%
GTGGTACCTACAATGGCCTT+AGG - Chr2:34748296-34748315 MsG0280008603.01.T01:three_prime_UTR 50.0%
TAACCTACGACATGAGGAGG+AGG + Chr2:34748575-34748594 None:intergenic 50.0%
TACAAGAATGTCTCCGGTGG+AGG - Chr2:34748601-34748620 MsG0280008603.01.T01:intron 50.0%
TAGATTTCGGATGAGGGAGG+TGG - Chr2:34749103-34749122 MsG0280008603.01.T01:intron 50.0%
TTGGATGAGCATGCCGATCT+TGG - Chr2:34749185-34749204 MsG0280008603.01.T01:intron 50.0%
!! TGATGCTCTTGGATTGGCGT+AGG - Chr2:34748048-34748067 MsG0280008603.01.T01:three_prime_UTR 50.0%
GAGCATGCCGATCTTGGAGT+TGG - Chr2:34749191-34749210 MsG0280008603.01.T01:intron 55.0%
GCATTCCTTGCTACCTCCAC+CGG + Chr2:34748617-34748636 None:intergenic 55.0%
TGTCTCCGGTGGAGGTAGCA+AGG - Chr2:34748609-34748628 MsG0280008603.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 34748047 34750563 34748047 ID=MsG0280008603.01;Name=MsG0280008603.01
Chr2 mRNA 34748047 34750563 34748047 ID=MsG0280008603.01.T01;Parent=MsG0280008603.01;Name=MsG0280008603.01.T01;_AED=0.24;_eAED=0.25;_QI=0|0.4|0.5|0.83|1|1|6|285|291
Chr2 exon 34748047 34748448 34748047 ID=MsG0280008603.01.T01:exon:36120;Parent=MsG0280008603.01.T01
Chr2 exon 34749294 34749431 34749294 ID=MsG0280008603.01.T01:exon:36119;Parent=MsG0280008603.01.T01
Chr2 exon 34749598 34749760 34749598 ID=MsG0280008603.01.T01:exon:36118;Parent=MsG0280008603.01.T01
Chr2 exon 34749887 34750067 34749887 ID=MsG0280008603.01.T01:exon:36117;Parent=MsG0280008603.01.T01
Chr2 exon 34750179 34750432 34750179 ID=MsG0280008603.01.T01:exon:36116;Parent=MsG0280008603.01.T01
Chr2 exon 34750541 34750563 34750541 ID=MsG0280008603.01.T01:exon:36115;Parent=MsG0280008603.01.T01
Chr2 CDS 34750541 34750563 34750541 ID=MsG0280008603.01.T01:cds;Parent=MsG0280008603.01.T01
Chr2 CDS 34750179 34750432 34750179 ID=MsG0280008603.01.T01:cds;Parent=MsG0280008603.01.T01
Chr2 CDS 34749887 34750067 34749887 ID=MsG0280008603.01.T01:cds;Parent=MsG0280008603.01.T01
Chr2 CDS 34749598 34749760 34749598 ID=MsG0280008603.01.T01:cds;Parent=MsG0280008603.01.T01
Chr2 CDS 34749294 34749431 34749294 ID=MsG0280008603.01.T01:cds;Parent=MsG0280008603.01.T01
Chr2 CDS 34748332 34748448 34748332 ID=MsG0280008603.01.T01:cds;Parent=MsG0280008603.01.T01
Chr2 three_prime_UTR 34748047 34748331 34748047 ID=MsG0280008603.01.T01:three_prime_utr;Parent=MsG0280008603.01.T01
Gene Sequence

>MsG0280008603.01.T01

ATGATGCTCTTGGATTGGCGTAGGTTAGAGTTGGTACTTGGATCGTTCCGCGATATTAGATCCTTTTCTGAGATCAAAAACATGAATGATGAAAAGGAGTTCACTGAAGTGATCAAAGCCATAAAAGTGAGACACAACAATGTGGTACCTACAATGGCCTTAGGTGTTCAGCAGTTGAAAAAAGATGTGGACCCAAAGATTATTAATCAAGATTTGTTGAGATTCATCAGTTCTAGATCGTTTTACATGTCAAGAATCGGAATCCGAATGCTTATAGGGCAGCATGTTGAGTTGCACAGTCCAAATCCTCCTCCTCATGTCGTAGGTTATATACATACAAGAATGTCTCCGGTGGAGGTAGCAAGGAATGCCGTTGACGATGCACGCTCTATATGCTCTCGTCAATATGGAAGTGCCCCTGACGTACATATATACGGCGATCCTGATTTTACTTTTCCATATGTTTACAATAGGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCTTTGCGTGCTGTCGAAGAGCGTTACATGAATTCCGACAATGATCCACCTCCCATAAGAATAATAGTTGCTGATGGATTAGAGGATGTTACCATAAAGAATCCATTGGATGAGCATGCCGATCTTGGAGTTGGCGATAATGTGACAATGGCTGGATATGGATATGGTCTTCCTATTAGTCGTCTATATGCTCGGTATTTTGGTGGCGATCTTCAAATAATCTCTATGGAAATTATGGGACTGATGCTTATCTACATCTGTCACGTTTGGGAGATTCACAAGAGCCATTGCCTTGAAATTAGGTTGTTTACTTACTTATCAGTCACACTCAAAAGGCACAGTATGCAACATTAA
Protein sequence

>MsG0280008603.01.T01

MMLLDWRRLELVLGSFRDIRSFSEIKNMNDEKEFTEVIKAIKVRHNNVVPTMALGVQQLKKDVDPKIINQDLLRFISSRSFYMSRIGIRMLIGQHVELHSPNPPPHVVGYIHTRMSPVEVARNAVDDARSICSRQYGSAPDVHIYGDPDFTFPYVYNRYVPAHLHLMVFELVKNSLRAVEERYMNSDNDPPPIRIIVADGLEDVTIKNPLDEHADLGVGDNVTMAGYGYGLPISRLYARYFGGDLQIISMEIMGLMLIYICHVWEIHKSHCLEIRLFTYLSVTLKRHSMQH*