AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000502.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000502.01.T01 MTR_1g013450 94.953 317 15 1 1 317 1 316 0.0 627
MsG0180000502.01.T01 MTR_3g105710 55.077 325 103 8 1 317 1 290 9.32e-103 303
MsG0180000502.01.T01 MTR_4g128930 45.810 358 146 7 4 316 20 374 2.34e-94 285
MsG0180000502.01.T01 MTR_7g018170 62.500 88 33 0 4 91 24 111 7.87e-35 130
MsG0180000502.01.T01 MTR_7g018170 66.216 74 17 1 251 316 322 395 1.18e-23 100
MsG0180000502.01.T01 MTR_1g023260 46.392 97 42 1 6 92 5 101 1.79e-22 95.1
MsG0180000502.01.T01 MTR_1g023260 46.392 97 42 1 6 92 5 101 3.07e-22 92.4
MsG0180000502.01.T01 MTR_5g069480 37.692 130 76 2 5 131 4 131 5.56e-21 92.8
MsG0180000502.01.T01 MTR_5g069480 37.692 130 76 2 5 131 4 131 6.35e-21 91.3
MsG0180000502.01.T01 MTR_5g021580 44.565 92 41 2 5 88 4 93 4.66e-19 83.6
MsG0180000502.01.T01 MTR_5g021580 44.211 95 43 2 5 91 4 96 5.10e-19 83.6
MsG0180000502.01.T01 MTR_4g071200 43.299 97 45 1 6 92 5 101 8.68e-19 84.0
MsG0180000502.01.T01 MTR_2g073370 41.667 96 47 1 6 92 5 100 4.49e-18 83.2
MsG0180000502.01.T01 MTR_4g067320 42.391 92 44 1 6 88 5 96 6.69e-18 81.6
MsG0180000502.01.T01 MTR_4g067320 42.391 92 44 1 6 88 5 96 6.71e-18 81.6
MsG0180000502.01.T01 MTR_3g082630 37.500 104 64 1 5 108 4 106 7.69e-18 84.0
MsG0180000502.01.T01 MTR_3g117320 41.237 97 47 1 6 92 5 101 2.22e-17 80.1
MsG0180000502.01.T01 MTR_7g108150 39.326 89 53 1 6 94 20 107 9.42e-17 80.5
MsG0180000502.01.T01 MTR_7g108150 35.659 129 69 4 172 297 252 369 5.35e-12 66.2
MsG0180000502.01.T01 MTR_3g113070 37.864 103 53 1 6 97 5 107 2.92e-16 77.0
MsG0180000502.01.T01 MTR_2g099010 40.217 92 46 1 6 88 5 96 9.39e-16 75.9
MsG0180000502.01.T01 MTR_2g099010 40.217 92 46 1 6 88 5 96 9.52e-16 75.9
MsG0180000502.01.T01 MTR_7g083540 38.710 93 52 1 6 98 5 92 2.31e-14 73.6
MsG0180000502.01.T01 MTR_3g034680 60.000 45 18 0 50 94 11 55 7.55e-14 67.0
MsG0180000502.01.T01 MTR_5g072780 49.275 69 32 1 233 298 148 216 2.79e-13 68.2
MsG0180000502.01.T01 MTR_2g088900 29.245 212 117 8 5 206 100 288 2.89e-13 70.5
MsG0180000502.01.T01 MTR_1g109350 36.486 74 47 0 4 77 3 76 1.85e-12 67.4
MsG0180000502.01.T01 MTR_1g110870 46.341 82 37 2 222 301 351 427 1.50e-11 65.1
MsG0180000502.01.T01 MTR_8g104190 68.182 44 14 0 256 299 358 401 2.26e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000502.01.T01 AT5G24930 53.714 350 105 14 1 302 1 341 1.18e-96 290
MsG0180000502.01.T01 AT2G24790 53.074 309 104 11 2 304 4 277 9.50e-95 283
MsG0180000502.01.T01 AT3G02380 42.730 337 165 7 4 316 14 346 4.41e-82 252
MsG0180000502.01.T01 AT5G57660 43.553 349 151 11 2 316 18 354 2.59e-73 230
MsG0180000502.01.T01 AT5G15850 40.230 348 166 9 6 316 12 354 2.78e-70 222
MsG0180000502.01.T01 AT5G15840 39.335 361 161 13 6 316 20 372 7.34e-70 222
MsG0180000502.01.T01 AT2G24790 50.237 211 75 7 2 208 4 188 1.17e-57 185
MsG0180000502.01.T01 AT5G15840 34.855 241 115 9 6 212 20 252 1.24e-34 127
MsG0180000502.01.T01 AT2G21320 44.211 95 43 2 5 91 4 96 5.30e-19 83.2
MsG0180000502.01.T01 AT4G38960 43.158 95 44 2 5 91 4 96 9.90e-19 82.8
MsG0180000502.01.T01 AT4G38960 43.158 95 44 2 5 91 4 96 9.90e-19 82.8
MsG0180000502.01.T01 AT1G78600 42.708 96 46 1 6 92 5 100 1.89e-18 84.3
MsG0180000502.01.T01 AT1G78600 42.708 96 46 1 6 92 5 100 2.58e-18 84.3
MsG0180000502.01.T01 AT1G75540 40.404 99 47 1 6 92 5 103 1.26e-17 82.4
MsG0180000502.01.T01 AT2G47890 40.659 91 52 1 4 94 11 99 1.70e-17 81.6
MsG0180000502.01.T01 AT2G47890 40.659 91 52 1 4 94 11 99 1.72e-17 82.0
MsG0180000502.01.T01 AT2G47890 52.459 61 27 1 240 300 273 331 4.39e-11 63.5
MsG0180000502.01.T01 AT2G47890 40.659 91 52 1 4 94 11 99 2.38e-17 80.1
MsG0180000502.01.T01 AT2G33500 40.449 89 53 0 6 94 12 100 4.71e-17 81.6
MsG0180000502.01.T01 AT2G33500 51.724 58 28 0 243 300 343 400 3.17e-11 64.3
MsG0180000502.01.T01 AT2G33500 40.449 89 53 0 6 94 12 100 4.83e-17 81.6
MsG0180000502.01.T01 AT2G33500 51.724 58 28 0 243 300 344 401 3.13e-11 64.3
MsG0180000502.01.T01 AT1G06040 43.478 92 43 1 6 88 5 96 1.15e-16 78.6
MsG0180000502.01.T01 AT1G28050 40.449 89 53 0 6 94 9 97 1.95e-16 79.7
MsG0180000502.01.T01 AT1G06040 43.478 92 43 1 6 88 5 96 2.10e-16 76.3
MsG0180000502.01.T01 AT5G48250 42.667 75 43 0 5 79 4 78 2.29e-16 79.3
MsG0180000502.01.T01 AT2G31380 29.798 198 80 6 6 144 5 202 1.06e-15 75.5
MsG0180000502.01.T01 AT3G07650 42.466 73 42 0 5 77 4 76 2.34e-15 76.3
MsG0180000502.01.T01 AT3G07650 42.466 73 42 0 5 77 4 76 2.34e-15 76.3
MsG0180000502.01.T01 AT3G07650 42.466 73 42 0 5 77 4 76 2.34e-15 76.3
MsG0180000502.01.T01 AT3G07650 42.466 73 42 0 5 77 4 76 2.34e-15 76.3
MsG0180000502.01.T01 AT4G15250 40.476 84 50 0 6 89 5 88 3.19e-15 75.5
MsG0180000502.01.T01 AT4G39070 38.776 98 50 1 5 92 4 101 2.38e-14 72.0
MsG0180000502.01.T01 AT1G68190 38.961 77 47 0 4 80 12 88 7.60e-14 71.6
MsG0180000502.01.T01 AT1G68190 38.961 77 47 0 4 80 12 88 7.60e-14 71.6
MsG0180000502.01.T01 AT1G68190 38.961 77 47 0 4 80 41 117 8.73e-14 71.6
MsG0180000502.01.T01 AT4G10240 36.275 102 46 2 6 92 5 102 2.17e-13 67.4
MsG0180000502.01.T01 AT1G73870 70.213 47 14 0 255 301 344 390 2.17e-13 70.5
MsG0180000502.01.T01 AT1G49130 53.968 63 29 0 237 299 259 321 4.45e-13 69.3
MsG0180000502.01.T01 AT1G49130 53.968 63 29 0 237 299 252 314 4.93e-13 68.9
MsG0180000502.01.T01 AT3G21880 36.364 88 46 1 6 83 9 96 6.88e-13 68.9
MsG0180000502.01.T01 AT3G21880 36.364 88 46 1 6 83 9 96 6.88e-13 68.9
MsG0180000502.01.T01 AT3G21880 36.364 88 46 1 6 83 5 92 7.21e-13 68.9
MsG0180000502.01.T01 AT1G68520 64.583 48 17 0 256 303 357 404 5.15e-12 66.6
MsG0180000502.01.T01 AT5G14370 66.667 45 15 0 256 300 294 338 1.04e-11 65.5
MsG0180000502.01.T01 AT1G25440 69.767 43 13 0 256 298 361 403 2.99e-11 64.3

Find 92 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGAGATCAGGGAATTT+AGG 0.162993 1:-7018462 None:intergenic
AGCAGCTGCGTCGGCTTTGC+AGG 0.207136 1:-7018247 None:intergenic
GTATATGTTAATGATATATT+AGG 0.232906 1:+7019329 MsG0180000502.01.T01:three_prime_UTR
GCGAACCTTCCTTTAATTCT+AGG 0.237184 1:-7019037 None:intergenic
GAAACTCGACCTAGAATTAA+AGG 0.252531 1:+7019028 MsG0180000502.01.T01:CDS
ATTTAGGGTTTGAAGGAGTT+TGG 0.272290 1:-7018446 None:intergenic
AATTGAGATCAGGGAATTTA+GGG 0.282604 1:-7018461 None:intergenic
GTGACGAAATCGTCAATTTC+GGG 0.319268 1:-7018501 None:intergenic
TGTTGCTTTGGATGACTTGC+AGG 0.340517 1:-7018091 None:intergenic
AAGAAGCAGAAGCTGCTTCC+TGG 0.355450 1:+7018418 MsG0180000502.01.T01:CDS
TCAGGGAATTTAGGGTTTGA+AGG 0.367060 1:-7018453 None:intergenic
AGTGACGAAATCGTCAATTT+CGG 0.368521 1:-7018502 None:intergenic
GACGCCATCTGCGGTGGTGC+CGG 0.374473 1:-7018562 None:intergenic
CACCGCAGATGGCGTCGTTC+CGG 0.376246 1:+7018569 MsG0180000502.01.T01:CDS
CAATTCAATAAACAACAAAA+TGG 0.385236 1:+7018050 MsG0180000502.01.T01:exon
GTGGCGGGAGGCGAGTTTGT+TGG 0.388480 1:-7018175 None:intergenic
GTTGTTGTTGTGGTGGTGGA+AGG 0.394821 1:-7018346 None:intergenic
GAGAGAAAAGAAAGAATAGA+AGG 0.401420 1:+7018963 MsG0180000502.01.T01:CDS
GAGTGTGACGCGGTGGTGGC+GGG 0.403622 1:-7018190 None:intergenic
TAGTGAGAGTAATTGAGATC+AGG 0.412297 1:-7018471 None:intergenic
ACGGCAGAATAGTGTTGCTT+TGG 0.415438 1:-7018103 None:intergenic
CAGAGAAGAATGATTGTTGT+TGG 0.418301 1:-7018371 None:intergenic
TTCACTTCGATTAGAAAGAA+AGG 0.418594 1:+7019140 MsG0180000502.01.T01:three_prime_UTR
AGCTTCTGCTTCTTCGTTGG+TGG 0.421356 1:-7018409 None:intergenic
GGCTGTTGTTGTTGTGGTGG+TGG 0.426525 1:-7018350 None:intergenic
CCGTCTCTGTCGCCGTCGTT+TGG 0.426542 1:-7018877 None:intergenic
ACGCCATCTGCGGTGGTGCC+GGG 0.428709 1:-7018561 None:intergenic
AGAGTGTGACGCGGTGGTGG+CGG 0.429623 1:-7018191 None:intergenic
AACTTCATACATAGTTCAAC+AGG 0.431616 1:-7019119 None:intergenic
AGTGAGAGTAATTGAGATCA+GGG 0.433298 1:-7018470 None:intergenic
TCCGTCATCACGTTTCCGTC+TGG 0.440194 1:-7018836 None:intergenic
CGTTCGTGGCGGCGAGCTAG+TGG 0.441707 1:-7018309 None:intergenic
ATCGGAACCGCCGCCGTCAT+CGG 0.450282 1:-7018902 None:intergenic
CCGGAGCTTGTTCACAGACT+TGG 0.464846 1:-7018215 None:intergenic
TTAGGTATCTTCGCCGTCGA+TGG 0.464857 1:+7018799 MsG0180000502.01.T01:intron
TGGTGGTGGAAGGTGGTGAG+AGG 0.469506 1:-7018336 None:intergenic
TCTCTTTCCACCGCCGTCAT+CGG 0.470887 1:-7018920 None:intergenic
AGCAGCTTCTGCTTCTTCGT+TGG 0.474181 1:-7018412 None:intergenic
GCTTTGCAGGTGACGTGAGC+CGG 0.474575 1:-7018234 None:intergenic
GACGATTTCGTCACTGTCAA+CGG 0.491915 1:+7018510 MsG0180000502.01.T01:CDS
TTAATTGCAGAGGATGAATA+CGG 0.494889 1:+7019085 MsG0180000502.01.T01:CDS
TGAAGGAGTTTGGAGAAGCC+AGG 0.505414 1:-7018436 None:intergenic
GGCAGAGTGTGACGCGGTGG+TGG 0.506125 1:-7018194 None:intergenic
GTAGTGTTCGTGTTCGTGTT+CGG 0.509358 1:-7018616 None:intergenic
GACGGCGGCGGTTCCGATGA+CGG 0.509663 1:+7018907 MsG0180000502.01.T01:CDS
GTTGTTGTGGTGGTGGAAGG+TGG 0.511007 1:-7018343 None:intergenic
TGGTGAGAGGGACACGTTCG+TGG 0.516914 1:-7018323 None:intergenic
GTTGGCTGTTGTTGTTGTGG+TGG 0.517079 1:-7018353 None:intergenic
GGCGGTTCCGATGACGGCGG+TGG 0.522894 1:+7018913 MsG0180000502.01.T01:CDS
GGTATCTTCGCCGTCGATGG+AGG 0.526645 1:+7018802 MsG0180000502.01.T01:intron
TCACTTCGATTAGAAAGAAA+GGG 0.527132 1:+7019141 MsG0180000502.01.T01:three_prime_UTR
TGAGAGTGTTGTGAGTGTGT+TGG 0.533685 1:-7018003 None:intergenic
CCAAGTCTGTGAACAAGCTC+CGG 0.534270 1:+7018215 MsG0180000502.01.T01:CDS
AAATATGAATTTAATTGCAG+AGG 0.534945 1:+7019075 MsG0180000502.01.T01:CDS
TTCGTGTTCGTGTTCGGTGG+TGG 0.536195 1:-7018610 None:intergenic
AGTCCCGGCACCACCGCAGA+TGG 0.542153 1:+7018558 MsG0180000502.01.T01:CDS
CGGCGGTGGAAAGAGAAGCT+AGG 0.543681 1:+7018927 MsG0180000502.01.T01:CDS
GTTCGTGGCGGCGAGCTAGT+GGG 0.545982 1:-7018308 None:intergenic
GTTGTTGGCTGTTGTTGTTG+TGG 0.546859 1:-7018356 None:intergenic
GGTGGTGGAAGGTGGTGAGA+GGG 0.548296 1:-7018335 None:intergenic
AGGCGAGTTTGTTGGCAGCA+TGG 0.549459 1:-7018167 None:intergenic
GACAGAGACGGCGCCGATGA+CGG 0.549460 1:+7018889 MsG0180000502.01.T01:CDS
AGAGTGGATGTCATGATCAC+AGG 0.550527 1:-7018280 None:intergenic
TCTTCGCCGTCGATGGAGGT+TGG 0.551535 1:+7018806 MsG0180000502.01.T01:CDS
ACGCCGGAGCAAAACAGTCC+CGG 0.553478 1:+7018543 MsG0180000502.01.T01:CDS
CGGAACGACGCCATCTGCGG+TGG 0.553872 1:-7018568 None:intergenic
GGCGGTGGAAAGAGAAGCTA+GGG 0.558883 1:+7018928 MsG0180000502.01.T01:CDS
GACGGCGCCGATGACGGCGG+CGG 0.560155 1:+7018895 MsG0180000502.01.T01:CDS
ACCAGACGGAAACGTGATGA+CGG 0.572547 1:+7018835 MsG0180000502.01.T01:CDS
TGATTGAAATTGTAAGTGAA+AGG 0.578430 1:-7018672 None:intergenic
TGTGACGCGGTGGTGGCGGG+AGG 0.581988 1:-7018187 None:intergenic
TTTGTTGGCAGCATGGATGT+TGG 0.587996 1:-7018160 None:intergenic
CACCGGAACGACGCCATCTG+CGG 0.589463 1:-7018571 None:intergenic
CCAAACGACGGCGACAGAGA+CGG 0.604022 1:+7018877 MsG0180000502.01.T01:CDS
TGGAATCACATGTGAGACAA+AGG 0.606070 1:-7018140 None:intergenic
GATACATAGAGCAGCTGCGT+CGG 0.618915 1:-7018256 None:intergenic
CTCGACCTAGAATTAAAGGA+AGG 0.631588 1:+7019032 MsG0180000502.01.T01:CDS
AAAGGAAAGCTGAATCAGAA+CGG 0.631900 1:-7018122 None:intergenic
ACAACTCCAACCTCCATCGA+CGG 0.637687 1:-7018812 None:intergenic
GTGTTCGTGTTCGTGTTCGG+TGG 0.637730 1:-7018613 None:intergenic
AGAGACGGCGCCGATGACGG+CGG 0.639729 1:+7018892 MsG0180000502.01.T01:CDS
GAGCTAGTGGGTTAGCAGAG+TGG 0.641063 1:-7018296 None:intergenic
TCATACATAGTTCAACAGGA+AGG 0.676360 1:-7019115 None:intergenic
GAGGTTGGAGTTGTACCAGA+CGG 0.695762 1:+7018821 MsG0180000502.01.T01:CDS
TGAGAGGGACACGTTCGTGG+CGG 0.705181 1:-7018320 None:intergenic
CAACGGTAAAACAGACACGC+CGG 0.705434 1:+7018527 MsG0180000502.01.T01:CDS
CTTGGCAGAGTGTGACGCGG+TGG 0.706255 1:-7018197 None:intergenic
AGACTTGGCAGAGTGTGACG+CGG 0.706454 1:-7018200 None:intergenic
TGACGAAATCGTCAATTTCG+GGG 0.717237 1:-7018500 None:intergenic
GGCGGCGGTTCCGATGACGG+CGG 0.762395 1:+7018910 MsG0180000502.01.T01:CDS
GTACTGCGGTTACCAAACGA+CGG 0.762753 1:+7018865 MsG0180000502.01.T01:CDS
ATGACGGAGATATCGTACTG+CGG 0.812252 1:+7018851 MsG0180000502.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTTAATATTAATTCAT+AGG - Chr1:7019246-7019265 None:intergenic 10.0%
!! GTATATGTTAATGATATATT+AGG + Chr1:7019329-7019348 MsG0180000502.01.T01:three_prime_UTR 15.0%
!!! ATCGTAATTTTTTTGAATTT+TGG - Chr1:7018717-7018736 None:intergenic 15.0%
!! AAATATGAATTTAATTGCAG+AGG + Chr1:7019075-7019094 MsG0180000502.01.T01:CDS 20.0%
!! CAATTCAATAAACAACAAAA+TGG + Chr1:7018050-7018069 MsG0180000502.01.T01:exon 20.0%
!!! ATTTCTTTTTTGTGTTGTTT+AGG + Chr1:7018781-7018800 MsG0180000502.01.T01:intron 20.0%
!!! TGATGTAGTTATAGTTTTTT+TGG + Chr1:7019437-7019456 MsG0180000502.01.T01:three_prime_UTR 20.0%
! ACTTGAAAAACATTCAAACA+CGG - Chr1:7019168-7019187 None:intergenic 25.0%
! TGATTGAAATTGTAAGTGAA+AGG - Chr1:7018675-7018694 None:intergenic 25.0%
!!! TGAAGTTTTGTAATTGGATT+GGG - Chr1:7017983-7018002 None:intergenic 25.0%
AACTTCATACATAGTTCAAC+AGG - Chr1:7019122-7019141 None:intergenic 30.0%
AATTGAGATCAGGGAATTTA+GGG - Chr1:7018464-7018483 None:intergenic 30.0%
ATTCAGAGTTCAAATTGAAG+AGG - Chr1:7018755-7018774 None:intergenic 30.0%
GAGAGAAAAGAAAGAATAGA+AGG + Chr1:7018963-7018982 MsG0180000502.01.T01:CDS 30.0%
TAATTGAGATCAGGGAATTT+AGG - Chr1:7018465-7018484 None:intergenic 30.0%
TCACTTCGATTAGAAAGAAA+GGG + Chr1:7019141-7019160 MsG0180000502.01.T01:three_prime_UTR 30.0%
TTAATTGCAGAGGATGAATA+CGG + Chr1:7019085-7019104 MsG0180000502.01.T01:CDS 30.0%
TTCACTTCGATTAGAAAGAA+AGG + Chr1:7019140-7019159 MsG0180000502.01.T01:three_prime_UTR 30.0%
! TTTTGGATTTCTCGTTCTTA+CGG - Chr1:7018700-7018719 None:intergenic 30.0%
!! GTGAAGTTTTGTAATTGGAT+TGG - Chr1:7017984-7018003 None:intergenic 30.0%
!! TGTTGGTGAAGTTTTGTAAT+TGG - Chr1:7017989-7018008 None:intergenic 30.0%
AAAGGAAAGCTGAATCAGAA+CGG - Chr1:7018125-7018144 None:intergenic 35.0%
AGTGACGAAATCGTCAATTT+CGG - Chr1:7018505-7018524 None:intergenic 35.0%
AGTGAGAGTAATTGAGATCA+GGG - Chr1:7018473-7018492 None:intergenic 35.0%
CAGAGAAGAATGATTGTTGT+TGG - Chr1:7018374-7018393 None:intergenic 35.0%
GAAACTCGACCTAGAATTAA+AGG + Chr1:7019028-7019047 MsG0180000502.01.T01:CDS 35.0%
TAGTGAGAGTAATTGAGATC+AGG - Chr1:7018474-7018493 None:intergenic 35.0%
TCATACATAGTTCAACAGGA+AGG - Chr1:7019118-7019137 None:intergenic 35.0%
! AAAGAGAAGCTAGGGTTTTA+AGG + Chr1:7018936-7018955 MsG0180000502.01.T01:CDS 35.0%
! ATTTAGGGTTTGAAGGAGTT+TGG - Chr1:7018449-7018468 None:intergenic 35.0%
!!! GTAAGTGAAAGGTTTTGAGT+TGG - Chr1:7018664-7018683 None:intergenic 35.0%
CTCGACCTAGAATTAAAGGA+AGG + Chr1:7019032-7019051 MsG0180000502.01.T01:CDS 40.0%
GCGAACCTTCCTTTAATTCT+AGG - Chr1:7019040-7019059 None:intergenic 40.0%
GTGACGAAATCGTCAATTTC+GGG - Chr1:7018504-7018523 None:intergenic 40.0%
TGACGAAATCGTCAATTTCG+GGG - Chr1:7018503-7018522 None:intergenic 40.0%
TGGAATCACATGTGAGACAA+AGG - Chr1:7018143-7018162 None:intergenic 40.0%
! TCAGGGAATTTAGGGTTTGA+AGG - Chr1:7018456-7018475 None:intergenic 40.0%
AGAGTGGATGTCATGATCAC+AGG - Chr1:7018283-7018302 None:intergenic 45.0%
GACGATTTCGTCACTGTCAA+CGG + Chr1:7018510-7018529 MsG0180000502.01.T01:CDS 45.0%
GTAGTGTTCGTGTTCGTGTT+CGG - Chr1:7018619-7018638 None:intergenic 45.0%
TTTGTTGGCAGCATGGATGT+TGG - Chr1:7018163-7018182 None:intergenic 45.0%
! ATGACGGAGATATCGTACTG+CGG + Chr1:7018851-7018870 MsG0180000502.01.T01:CDS 45.0%
! GTTGTTGGCTGTTGTTGTTG+TGG - Chr1:7018359-7018378 None:intergenic 45.0%
!! ACGGCAGAATAGTGTTGCTT+TGG - Chr1:7018106-7018125 None:intergenic 45.0%
!! TGAGAGTGTTGTGAGTGTGT+TGG - Chr1:7018006-7018025 None:intergenic 45.0%
!! TGTTGCTTTGGATGACTTGC+AGG - Chr1:7018094-7018113 None:intergenic 45.0%
AAGAAGCAGAAGCTGCTTCC+TGG + Chr1:7018418-7018437 MsG0180000502.01.T01:CDS 50.0%
ACAACTCCAACCTCCATCGA+CGG - Chr1:7018815-7018834 None:intergenic 50.0%
ACCAGACGGAAACGTGATGA+CGG + Chr1:7018835-7018854 MsG0180000502.01.T01:CDS 50.0%
AGCAGCTTCTGCTTCTTCGT+TGG - Chr1:7018415-7018434 None:intergenic 50.0%
AGCTTCTGCTTCTTCGTTGG+TGG - Chr1:7018412-7018431 None:intergenic 50.0%
CAACGGTAAAACAGACACGC+CGG + Chr1:7018527-7018546 MsG0180000502.01.T01:CDS 50.0%
CCAAGTCTGTGAACAAGCTC+CGG + Chr1:7018215-7018234 MsG0180000502.01.T01:CDS 50.0%
GAGGTTGGAGTTGTACCAGA+CGG + Chr1:7018821-7018840 MsG0180000502.01.T01:CDS 50.0%
GATACATAGAGCAGCTGCGT+CGG - Chr1:7018259-7018278 None:intergenic 50.0%
GTACTGCGGTTACCAAACGA+CGG + Chr1:7018865-7018884 MsG0180000502.01.T01:CDS 50.0%
TGAAGGAGTTTGGAGAAGCC+AGG - Chr1:7018439-7018458 None:intergenic 50.0%
TTAGGTATCTTCGCCGTCGA+TGG + Chr1:7018799-7018818 MsG0180000502.01.T01:intron 50.0%
! GTTGGCTGTTGTTGTTGTGG+TGG - Chr1:7018356-7018375 None:intergenic 50.0%
!! GTTGTTGTTGTGGTGGTGGA+AGG - Chr1:7018349-7018368 None:intergenic 50.0%
!!! GTTTTGCTCTGAGACTGCAC+CGG - Chr1:7018591-7018610 None:intergenic 50.0%
AGACTTGGCAGAGTGTGACG+CGG - Chr1:7018203-7018222 None:intergenic 55.0%
GGCGGTGGAAAGAGAAGCTA+GGG + Chr1:7018928-7018947 MsG0180000502.01.T01:CDS 55.0%
GTGTTCGTGTTCGTGTTCGG+TGG - Chr1:7018616-7018635 None:intergenic 55.0%
TCCGTCATCACGTTTCCGTC+TGG - Chr1:7018839-7018858 None:intergenic 55.0%
TCTCTTTCCACCGCCGTCAT+CGG - Chr1:7018923-7018942 None:intergenic 55.0%
! CCGGAGCTTGTTCACAGACT+TGG - Chr1:7018218-7018237 None:intergenic 55.0%
! GGCTGTTGTTGTTGTGGTGG+TGG - Chr1:7018353-7018372 None:intergenic 55.0%
! TTCGTGTTCGTGTTCGGTGG+TGG - Chr1:7018613-7018632 None:intergenic 55.0%
!! AGGCGAGTTTGTTGGCAGCA+TGG - Chr1:7018170-7018189 None:intergenic 55.0%
!! GAGCTAGTGGGTTAGCAGAG+TGG - Chr1:7018299-7018318 None:intergenic 55.0%
!! GTTGTTGTGGTGGTGGAAGG+TGG - Chr1:7018346-7018365 None:intergenic 55.0%
ACGCCGGAGCAAAACAGTCC+CGG + Chr1:7018543-7018562 MsG0180000502.01.T01:CDS 60.0%
CCAAACGACGGCGACAGAGA+CGG + Chr1:7018877-7018896 MsG0180000502.01.T01:CDS 60.0%
CGGCGGTGGAAAGAGAAGCT+AGG + Chr1:7018927-7018946 MsG0180000502.01.T01:CDS 60.0%
GCTTTGCAGGTGACGTGAGC+CGG - Chr1:7018237-7018256 None:intergenic 60.0%
GGTATCTTCGCCGTCGATGG+AGG + Chr1:7018802-7018821 MsG0180000502.01.T01:intron 60.0%
TCTTCGCCGTCGATGGAGGT+TGG + Chr1:7018806-7018825 MsG0180000502.01.T01:CDS 60.0%
TGAGAGGGACACGTTCGTGG+CGG - Chr1:7018323-7018342 None:intergenic 60.0%
TGGTGAGAGGGACACGTTCG+TGG - Chr1:7018326-7018345 None:intergenic 60.0%
! GTGCCGGGACTGTTTTGCTC+CGG - Chr1:7018549-7018568 None:intergenic 60.0%
!! GGTGGTGGAAGGTGGTGAGA+GGG - Chr1:7018338-7018357 None:intergenic 60.0%
!! TGGTGGTGGAAGGTGGTGAG+AGG - Chr1:7018339-7018358 None:intergenic 60.0%
ATCGGAACCGCCGCCGTCAT+CGG - Chr1:7018905-7018924 None:intergenic 65.0%
CACCGCAGATGGCGTCGTTC+CGG + Chr1:7018569-7018588 MsG0180000502.01.T01:CDS 65.0%
CACCGGAACGACGCCATCTG+CGG - Chr1:7018574-7018593 None:intergenic 65.0%
CCGTCTCTGTCGCCGTCGTT+TGG - Chr1:7018880-7018899 None:intergenic 65.0%
CTTGGCAGAGTGTGACGCGG+TGG - Chr1:7018200-7018219 None:intergenic 65.0%
GTTCGTGGCGGCGAGCTAGT+GGG - Chr1:7018311-7018330 None:intergenic 65.0%
! AGAGTGTGACGCGGTGGTGG+CGG - Chr1:7018194-7018213 None:intergenic 65.0%
! GTGGCGGGAGGCGAGTTTGT+TGG - Chr1:7018178-7018197 None:intergenic 65.0%
!! AGCAGCTGCGTCGGCTTTGC+AGG - Chr1:7018250-7018269 None:intergenic 65.0%
!! GACAGAGACGGCGCCGATGA+CGG + Chr1:7018889-7018908 MsG0180000502.01.T01:CDS 65.0%
ACGCCATCTGCGGTGGTGCC+GGG - Chr1:7018564-7018583 None:intergenic 70.0%
AGTCCCGGCACCACCGCAGA+TGG + Chr1:7018558-7018577 MsG0180000502.01.T01:CDS 70.0%
CGGAACGACGCCATCTGCGG+TGG - Chr1:7018571-7018590 None:intergenic 70.0%
CGTTCGTGGCGGCGAGCTAG+TGG - Chr1:7018312-7018331 None:intergenic 70.0%
GACGCCATCTGCGGTGGTGC+CGG - Chr1:7018565-7018584 None:intergenic 70.0%
GACGGCGGCGGTTCCGATGA+CGG + Chr1:7018907-7018926 MsG0180000502.01.T01:CDS 70.0%
GGCAGAGTGTGACGCGGTGG+TGG - Chr1:7018197-7018216 None:intergenic 70.0%
! GAGTGTGACGCGGTGGTGGC+GGG - Chr1:7018193-7018212 None:intergenic 70.0%
!! AGAGACGGCGCCGATGACGG+CGG + Chr1:7018892-7018911 MsG0180000502.01.T01:CDS 70.0%
! GGCGGCGGTTCCGATGACGG+CGG + Chr1:7018910-7018929 MsG0180000502.01.T01:CDS 75.0%
! GGCGGTTCCGATGACGGCGG+TGG + Chr1:7018913-7018932 MsG0180000502.01.T01:CDS 75.0%
!! TGTGACGCGGTGGTGGCGGG+AGG - Chr1:7018190-7018209 None:intergenic 75.0%
!!! GACGGCGCCGATGACGGCGG+CGG + Chr1:7018895-7018914 MsG0180000502.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 7017977 7019484 7017977 ID=MsG0180000502.01;Name=MsG0180000502.01
Chr1 mRNA 7017977 7019484 7017977 ID=MsG0180000502.01.T01;Parent=MsG0180000502.01;Name=MsG0180000502.01.T01;_AED=0.36;_eAED=0.36;_QI=92|1|1|1|1|1|2|358|317
Chr1 exon 7018803 7019484 7018803 ID=MsG0180000502.01.T01:exon:2313;Parent=MsG0180000502.01.T01
Chr1 exon 7017977 7018698 7017977 ID=MsG0180000502.01.T01:exon:2312;Parent=MsG0180000502.01.T01
Chr1 five_prime_UTR 7017977 7018068 7017977 ID=MsG0180000502.01.T01:five_prime_utr;Parent=MsG0180000502.01.T01
Chr1 CDS 7018069 7018698 7018069 ID=MsG0180000502.01.T01:cds;Parent=MsG0180000502.01.T01
Chr1 CDS 7018803 7019126 7018803 ID=MsG0180000502.01.T01:cds;Parent=MsG0180000502.01.T01
Chr1 three_prime_UTR 7019127 7019484 7019127 ID=MsG0180000502.01.T01:three_prime_utr;Parent=MsG0180000502.01.T01
Gene Sequence

>MsG0180000502.01.T01

ATGGCTACTAAGCTATGTGATTCCTGCAAGTCATCCAAAGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTTTGTCTCACATGTGATTCCAACATCCATGCTGCCAACAAACTCGCCTCCCGCCACCACCGCGTCACACTCTGCCAAGTCTGTGAACAAGCTCCGGCTCACGTCACCTGCAAAGCCGACGCAGCTGCTCTATGTATCTCCTGTGATCATGACATCCACTCTGCTAACCCACTAGCTCGCCGCCACGAACGTGTCCCTCTCACCACCTTCCACCACCACAACAACAACAGCCAACAACAATCATTCTTCTCTGAAAATGATCACGATGCCACCAACGAAGAAGCAGAAGCTGCTTCCTGGCTTCTCCAAACTCCTTCAAACCCTAAATTCCCTGATCTCAATTACTCTCACTACTCGTACCCCGAAATTGACGATTTCGTCACTGTCAACGGTAAAACAGACACGCCGGAGCAAAACAGTCCCGGCACCACCGCAGATGGCGTCGTTCCGGTGCAGTCTCAGAGCAAAACCACCACCGAACACGAACACGAACACTACTCAGATATCAACATCGATTTCTCCAACTCAAAACCTTTCACTTACAATTTCAATCACACCGTATCTTCGCCGTCGATGGAGGTTGGAGTTGTACCAGACGGAAACGTGATGACGGAGATATCGTACTGCGGTTACCAAACGACGGCGACAGAGACGGCGCCGATGACGGCGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTTTAAGGTACAGAGAGAAAAGAAAGAATAGAAGGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCTTATGCAGAAACTCGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCAGATTTAAATATGAATTTAATTGCAGAGGATGAATACGGCGTCGTTCCTTCCTGTTGA

Protein sequence

>MsG0180000502.01.T01

MATKLCDSCKSSKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAAALCISCDHDIHSANPLARRHERVPLTTFHHHNNNSQQQSFFSENDHDATNEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDFVTVNGKTDTPEQNSPGTTADGVVPVQSQSKTTTEHEHEHYSDINIDFSNSKPFTYNFNHTVSSPSMEVGVVPDGNVMTEISYCGYQTTATETAPMTAAVPMTAVEREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNLIAEDEYGVVPSC*