AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018088.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018088.01.T01 MTR_4g005070 98.438 64 0 1 56 119 285 347 6.02e-37 132
MsG0480018088.01.T01 MTR_4g005070 94.915 59 3 0 1 59 143 201 5.29e-31 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018088.01.T01 AT1G16720 68.235 85 26 1 35 119 273 356 2.55e-30 113
MsG0480018088.01.T01 AT1G16720 81.356 59 11 0 1 59 152 210 7.11e-27 103
MsG0480018088.01.T01 AT1G16720 68.235 85 26 1 35 119 273 356 2.73e-30 113
MsG0480018088.01.T01 AT1G16720 81.356 59 11 0 1 59 152 210 7.18e-27 103
MsG0480018088.01.T01 AT1G16720 68.235 85 26 1 35 119 273 356 2.91e-30 113
MsG0480018088.01.T01 AT1G16720 81.356 59 11 0 1 59 152 210 6.99e-27 103

Find 70 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACAACACTTTCACTTTC+AGG 0.166841 4:+96377 MsG0480018088.01.T01:five_prime_UTR
ATTCTCAGTGAACTCAAATT+TGG 0.188350 4:-97561 None:intergenic
GTTTGTTGTCGTCGTCGTTT+TGG 0.235444 4:-96529 None:intergenic
GTCTTGCCATCCCTGGTGTT+TGG 0.311659 4:-96492 None:intergenic
AACCCCTGAGCATGAGTTTA+CGG 0.337945 4:-96813 None:intergenic
AGGAGCGGGTATGCTGCTTT+TGG 0.386792 4:-96437 None:intergenic
AAATTTGAGTTCACTGAGAA+TGG 0.390202 4:+97563 MsG0480018088.01.T01:CDS
GGACAACAATTCGACCTATA+CGG 0.404869 4:-96792 None:intergenic
TGTCAACTTCAAATCTGAAC+TGG 0.405031 4:-96172 None:intergenic
GACTGACAACTGACAGGAAT+CGG 0.414139 4:-96150 None:intergenic
TCTTGCTGTCTTGCCATCCC+TGG 0.424250 4:-96499 None:intergenic
AATACTACTGTACTTGTTGT+TGG 0.426072 4:+96760 MsG0480018088.01.T01:CDS
CTGGACTGGGTCAGATCTCT+AGG 0.427807 4:+96650 MsG0480018088.01.T01:five_prime_UTR
GTTGGTGCTACTAGCCGTAT+AGG 0.435219 4:+96778 MsG0480018088.01.T01:CDS
TTAGGGTATGTCTTCAATAG+AGG 0.440898 4:+97697 MsG0480018088.01.T01:intron
TTGTCCGTAAACTCATGCTC+AGG 0.442258 4:+96809 MsG0480018088.01.T01:CDS
TTGGAGAAAATTCTCTGGAC+TGG 0.448352 4:+96636 MsG0480018088.01.T01:five_prime_UTR
CGACGTCAACCCGTGGGACT+TGG 0.451584 4:+96584 MsG0480018088.01.T01:five_prime_UTR
GTGTTTGGAGCAGCGGCTAT+AGG 0.454033 4:-96477 None:intergenic
ATGTGTGAGTTTGCCATCCC+TGG 0.462288 4:+96730 MsG0480018088.01.T01:CDS
TGAGGTTGGAGAAAATTCTC+TGG 0.473847 4:+96631 MsG0480018088.01.T01:five_prime_UTR
ATCCCTGGTGTTTGGAGCAG+CGG 0.491895 4:-96484 None:intergenic
GATCGCTCGCAATTGCCAAT+TGG 0.504803 4:-96203 None:intergenic
TAGCCGCTGCTCCAAACACC+AGG 0.507877 4:+96481 MsG0480018088.01.T01:five_prime_UTR
CGCTCGCAATTGCCAATTGG+AGG 0.507964 4:-96200 None:intergenic
CTGCAATGAAGGCTTTGGTA+AGG 0.516682 4:+97179 MsG0480018088.01.T01:intron
CTTTGGGTAGTACTCTTGAC+AGG 0.517774 4:+97755 MsG0480018088.01.T01:CDS
TGGAGAAAATTCTCTGGACT+GGG 0.524318 4:+96637 MsG0480018088.01.T01:five_prime_UTR
CAGTCGTTGTACAGAGGAGC+GGG 0.528087 4:-96451 None:intergenic
CTGAATCTTCACTAGATGGA+TGG 0.530354 4:+97475 MsG0480018088.01.T01:intron
GTAGTTACCTCAAAATATGA+TGG 0.532512 4:+97527 MsG0480018088.01.T01:CDS
GTTGACACAAGTCCTCCAAT+TGG 0.538762 4:+96188 MsG0480018088.01.T01:five_prime_UTR
TGTCCGTAAACTCATGCTCA+GGG 0.540648 4:+96810 MsG0480018088.01.T01:CDS
ACAGTAGTATTCTGAGCACC+AGG 0.541242 4:-96748 None:intergenic
CGATCTTCGACCAAGTCCCA+CGG 0.544015 4:-96594 None:intergenic
AAGGAAGGCAGATGAAGAGG+TGG 0.546607 4:+97198 MsG0480018088.01.T01:CDS
GAACTGGACTGACAACTGAC+AGG 0.548123 4:-96156 None:intergenic
CGGCAGATATTCGATGAGGT+TGG 0.548353 4:+96617 MsG0480018088.01.T01:five_prime_UTR
AGGTGGTAGAGCTGCTTCCA+AGG 0.555546 4:+97215 MsG0480018088.01.T01:CDS
GGAAAGTAGTGTGATTTGTG+AGG 0.562087 4:-96405 None:intergenic
GCTCAGGGGTTACTCTGTCA+AGG 0.566034 4:+96825 MsG0480018088.01.T01:CDS
GATGCTCTTCTTGTTCGTGA+AGG 0.569216 4:+96703 MsG0480018088.01.T01:five_prime_UTR
CTCAAAATATGATGGAGGGA+TGG 0.571128 4:+97535 MsG0480018088.01.T01:CDS
GCTGCTCCAAACACCAGGGA+TGG 0.572532 4:+96486 MsG0480018088.01.T01:five_prime_UTR
TTTGGAGCAGCGGCTATAGG+AGG 0.582108 4:-96474 None:intergenic
GTCTCGACGACGTCAACCCG+TGG 0.588795 4:+96577 MsG0480018088.01.T01:five_prime_UTR
GGGTATGTCTTCAATAGAGG+TGG 0.590645 4:+97700 MsG0480018088.01.T01:intron
GACTATACGTAATGATGATG+TGG 0.593280 4:+96672 MsG0480018088.01.T01:five_prime_UTR
GTTACCTCAAAATATGATGG+AGG 0.594354 4:+97530 MsG0480018088.01.T01:CDS
GGTAAGGAAGGCAGATGAAG+AGG 0.596194 4:+97195 MsG0480018088.01.T01:CDS
AATGAAGGCTTTGGTAAGGA+AGG 0.596671 4:+97183 MsG0480018088.01.T01:intron
GGGATGGCAAACTCACACAT+AGG 0.598239 4:-96727 None:intergenic
GATCTTCGACCAAGTCCCAC+GGG 0.598634 4:-96593 None:intergenic
GCAGCAATTGTTGTTGCTGA+AGG 0.611171 4:-96320 None:intergenic
TGGGACTTGGTCGAAGATCG+CGG 0.621311 4:+96597 MsG0480018088.01.T01:five_prime_UTR
AAGTAGTGTGATTTGTGAGG+AGG 0.630811 4:-96402 None:intergenic
AGTATTCTGAGCACCAGGGA+TGG 0.632012 4:-96743 None:intergenic
TTACCTCAAAATATGATGGA+GGG 0.640633 4:+97531 MsG0480018088.01.T01:CDS
AGGAGGCAGTCGTTGTACAG+AGG 0.649342 4:-96457 None:intergenic
ATAATGAATTGAAAATGCAG+TGG 0.657643 4:-96240 None:intergenic
GCAGTCGTTGTACAGAGGAG+CGG 0.662658 4:-96452 None:intergenic
TATACGTAATGATGATGTGG+AGG 0.671233 4:+96675 MsG0480018088.01.T01:five_prime_UTR
AATTGTTGTTGCTGAAGGTG+AGG 0.678588 4:-96315 None:intergenic
AGATGGATGGAAGTTCGTCA+AGG 0.679359 4:+97488 MsG0480018088.01.T01:intron
TCTCGACGACGTCAACCCGT+GGG 0.680875 4:+96578 MsG0480018088.01.T01:five_prime_UTR
CTGTCAAGAGTACTACCCAA+AGG 0.683886 4:-97754 None:intergenic
GTCCGTAAACTCATGCTCAG+GGG 0.688942 4:+96811 MsG0480018088.01.T01:CDS
AGCCGCTGCTCCAAACACCA+GGG 0.697507 4:+96482 MsG0480018088.01.T01:five_prime_UTR
CAGTAGTATTCTGAGCACCA+GGG 0.701255 4:-96747 None:intergenic
ATCGCGGCAGATATTCGATG+AGG 0.710196 4:+96613 MsG0480018088.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAAATAAAATATA+GGG - Chr4:97679-97698 None:intergenic 0.0%
!! TAAAATTAAAAATAAAATAT+AGG - Chr4:97680-97699 None:intergenic 0.0%
!!! ATATTTTATTTTTAATTTTA+GGG + Chr4:97680-97699 MsG0480018088.01.T01:intron 0.0%
!!! TATATTTTATTTTTAATTTT+AGG + Chr4:97679-97698 MsG0480018088.01.T01:intron 0.0%
!! AATTAAAAATAAAATATAGG+GGG - Chr4:97677-97696 None:intergenic 10.0%
!! ATAGTATGTATAAAATAAAA+TGG + Chr4:97018-97037 MsG0480018088.01.T01:intron 10.0%
!! TAATATCCAATAACATAATT+AGG - Chr4:97072-97091 None:intergenic 15.0%
!! AATAAAATGGTTAATTTCCT+TGG + Chr4:97031-97050 MsG0480018088.01.T01:intron 20.0%
!! AATAATCTTGCAAAAAATGT+TGG - Chr4:97632-97651 None:intergenic 20.0%
!! AATTCACCTAATTATGTTAT+TGG + Chr4:97063-97082 MsG0480018088.01.T01:intron 20.0%
! ATAATGAATTGAAAATGCAG+TGG - Chr4:96243-96262 None:intergenic 25.0%
! GAATGTGAAATTGCTAAATA+TGG - Chr4:96984-97003 None:intergenic 25.0%
! TTAGTTTCTAAATCAATCTG+GGG + Chr4:96910-96929 MsG0480018088.01.T01:intron 25.0%
!! AGATTGATTTAGAAACTAAC+TGG - Chr4:96909-96928 None:intergenic 25.0%
!! AGTTAGTTTCTAAATCAATC+TGG + Chr4:96908-96927 MsG0480018088.01.T01:intron 25.0%
!! GTTAGTTTCTAAATCAATCT+GGG + Chr4:96909-96928 MsG0480018088.01.T01:intron 25.0%
!! TAATCTATCTAAAGCATTTC+AGG + Chr4:97379-97398 MsG0480018088.01.T01:intron 25.0%
!! TTTGATTGGCTAAAAAACAT+GGG - Chr4:96956-96975 None:intergenic 25.0%
AAAAAAGCTTTCTCTACCTT+TGG + Chr4:97738-97757 MsG0480018088.01.T01:CDS 30.0%
AAAAAGCTTTCTCTACCTTT+GGG + Chr4:97739-97758 MsG0480018088.01.T01:CDS 30.0%
AAATCTGAATCTTCACTAGA+TGG + Chr4:97471-97490 MsG0480018088.01.T01:intron 30.0%
AACTAACTGGTCATCAATTA+TGG - Chr4:96896-96915 None:intergenic 30.0%
AATACAACACTTTCACTTTC+AGG + Chr4:96377-96396 MsG0480018088.01.T01:five_prime_UTR 30.0%
ATTCTCAGTGAACTCAAATT+TGG - Chr4:97564-97583 None:intergenic 30.0%
GTAGTTACCTCAAAATATGA+TGG + Chr4:97527-97546 MsG0480018088.01.T01:CDS 30.0%
GTCAAATCATTCTGACAAAT+CGG - Chr4:97116-97135 None:intergenic 30.0%
TGACAGTTCAAAACATAAAC+TGG + Chr4:97132-97151 MsG0480018088.01.T01:intron 30.0%
TGTGAAATTGCTAAATATGG+TGG - Chr4:96981-97000 None:intergenic 30.0%
! AAATTTGAGTTCACTGAGAA+TGG + Chr4:97563-97582 MsG0480018088.01.T01:CDS 30.0%
! GTTTGATTGGCTAAAAAACA+TGG - Chr4:96957-96976 None:intergenic 30.0%
! TAAATATGGTGGTGTTTGAT+TGG - Chr4:96970-96989 None:intergenic 30.0%
! TTACCTCAAAATATGATGGA+GGG + Chr4:97531-97550 MsG0480018088.01.T01:CDS 30.0%
!! AATACTACTGTACTTGTTGT+TGG + Chr4:96760-96779 MsG0480018088.01.T01:CDS 30.0%
!! ATCAACTTTTTCTGCAATGA+AGG + Chr4:97168-97187 MsG0480018088.01.T01:intron 30.0%
GTTACCTCAAAATATGATGG+AGG + Chr4:97530-97549 MsG0480018088.01.T01:CDS 35.0%
TAGTACTCTTGACAGGTATT+AGG + Chr4:97762-97781 MsG0480018088.01.T01:CDS 35.0%
TGTCAACTTCAAATCTGAAC+TGG - Chr4:96175-96194 None:intergenic 35.0%
TTAGGGTATGTCTTCAATAG+AGG + Chr4:97697-97716 MsG0480018088.01.T01:intron 35.0%
TTCAGGATCACAACAATCAA+TGG + Chr4:97396-97415 MsG0480018088.01.T01:intron 35.0%
! ATCAATCTGGGGTACAAAAA+AGG + Chr4:96921-96940 MsG0480018088.01.T01:intron 35.0%
! GACTATACGTAATGATGATG+TGG + Chr4:96672-96691 MsG0480018088.01.T01:five_prime_UTR 35.0%
! TATACGTAATGATGATGTGG+AGG + Chr4:96675-96694 MsG0480018088.01.T01:five_prime_UTR 35.0%
! TTTTTCTGCAATGAAGGCTT+TGG + Chr4:97174-97193 MsG0480018088.01.T01:intron 35.0%
ACTATCACTGGTGATCTCTT+CGG + Chr4:97336-97355 MsG0480018088.01.T01:intron 40.0%
AGGGGGTAAAATCAGATTTC+AGG - Chr4:97660-97679 None:intergenic 40.0%
AGGTCAGTAGAGATAGTGAT+TGG + Chr4:97235-97254 MsG0480018088.01.T01:intron 40.0%
ATCACTATCTCTACTGACCT+TGG - Chr4:97235-97254 None:intergenic 40.0%
CTGAATCTTCACTAGATGGA+TGG + Chr4:97475-97494 MsG0480018088.01.T01:intron 40.0%
GAGATAGTGATTGGGATGTT+TGG + Chr4:97244-97263 MsG0480018088.01.T01:intron 40.0%
GGACAACAATTCGACCTATA+CGG - Chr4:96795-96814 None:intergenic 40.0%
GGTCAGTAGAGATAGTGATT+GGG + Chr4:97236-97255 MsG0480018088.01.T01:intron 40.0%
GGTGAATTGTCTTCTAACCA+AGG - Chr4:97051-97070 None:intergenic 40.0%
TGAGGTTGGAGAAAATTCTC+TGG + Chr4:96631-96650 MsG0480018088.01.T01:five_prime_UTR 40.0%
TGGAGAAAATTCTCTGGACT+GGG + Chr4:96637-96656 MsG0480018088.01.T01:five_prime_UTR 40.0%
TTGGAGAAAATTCTCTGGAC+TGG + Chr4:96636-96655 MsG0480018088.01.T01:five_prime_UTR 40.0%
TTGGCTAAAAAACATGGGAC+TGG - Chr4:96951-96970 None:intergenic 40.0%
! AAGTAGTGTGATTTGTGAGG+AGG - Chr4:96405-96424 None:intergenic 40.0%
! AATGAAGGCTTTGGTAAGGA+AGG + Chr4:97183-97202 MsG0480018088.01.T01:intron 40.0%
! AATTGTTGTTGCTGAAGGTG+AGG - Chr4:96318-96337 None:intergenic 40.0%
! CATCCCTCCATCATATTTTG+AGG - Chr4:97537-97556 None:intergenic 40.0%
! CTCAAAATATGATGGAGGGA+TGG + Chr4:97535-97554 MsG0480018088.01.T01:CDS 40.0%
! GGAAAGTAGTGTGATTTGTG+AGG - Chr4:96408-96427 None:intergenic 40.0%
! GTTTTCTCAGGTATATGGAG+AGG + Chr4:97593-97612 MsG0480018088.01.T01:intron 40.0%
!! TTTGTTGTCGTCGTCGTTTT+GGG - Chr4:96531-96550 None:intergenic 40.0%
!!! CTGCTGTTTTCTCAGGTATA+TGG + Chr4:97588-97607 MsG0480018088.01.T01:intron 40.0%
AACCCCTGAGCATGAGTTTA+CGG - Chr4:96816-96835 None:intergenic 45.0%
ACAGTAGTATTCTGAGCACC+AGG - Chr4:96751-96770 None:intergenic 45.0%
AGATGGATGGAAGTTCGTCA+AGG + Chr4:97488-97507 MsG0480018088.01.T01:intron 45.0%
ATCACCAGTGATAGTTGAGC+GGG - Chr4:97331-97350 None:intergenic 45.0%
CAGTAGTATTCTGAGCACCA+GGG - Chr4:96750-96769 None:intergenic 45.0%
CTATCACTGGTGATCTCTTC+GGG + Chr4:97337-97356 MsG0480018088.01.T01:intron 45.0%
CTTTGGGTAGTACTCTTGAC+AGG + Chr4:97755-97774 MsG0480018088.01.T01:CDS 45.0%
GATCACCAGTGATAGTTGAG+CGG - Chr4:97332-97351 None:intergenic 45.0%
GATGCTCTTCTTGTTCGTGA+AGG + Chr4:96703-96722 MsG0480018088.01.T01:five_prime_UTR 45.0%
GGGTATGTCTTCAATAGAGG+TGG + Chr4:97700-97719 MsG0480018088.01.T01:intron 45.0%
GTTGACACAAGTCCTCCAAT+TGG + Chr4:96188-96207 MsG0480018088.01.T01:five_prime_UTR 45.0%
TGGTGATCCAAACACAGTCA+AGG + Chr4:97264-97283 MsG0480018088.01.T01:intron 45.0%
TGTCCGTAAACTCATGCTCA+GGG + Chr4:96810-96829 MsG0480018088.01.T01:CDS 45.0%
TTGTCCGTAAACTCATGCTC+AGG + Chr4:96809-96828 MsG0480018088.01.T01:CDS 45.0%
! CTGCAATGAAGGCTTTGGTA+AGG + Chr4:97179-97198 MsG0480018088.01.T01:intron 45.0%
! GCAGCAATTGTTGTTGCTGA+AGG - Chr4:96323-96342 None:intergenic 45.0%
!! CTGTCAAGAGTACTACCCAA+AGG - Chr4:97757-97776 None:intergenic 45.0%
!!! AATGGAGCTGCTGTTTTCTC+AGG + Chr4:97581-97600 MsG0480018088.01.T01:CDS 45.0%
!!! GTTTGTTGTCGTCGTCGTTT+TGG - Chr4:96532-96551 None:intergenic 45.0%
!!! TGCTGCTTTTGGTGTATGAG+AGG - Chr4:96429-96448 None:intergenic 45.0%
!! AAATTAAAAATAAAATATAG+GGG - Chr4:97678-97697 None:intergenic 5.0%
AAGGAAGGCAGATGAAGAGG+TGG + Chr4:97198-97217 MsG0480018088.01.T01:CDS 50.0%
ACAGCAGCCTTGACTGTGTT+TGG - Chr4:97274-97293 None:intergenic 50.0%
ACAGTCAAGGCTGCTGTAGA+AGG + Chr4:97277-97296 MsG0480018088.01.T01:intron 50.0%
AGTATTCTGAGCACCAGGGA+TGG - Chr4:96746-96765 None:intergenic 50.0%
ATCGCGGCAGATATTCGATG+AGG + Chr4:96613-96632 MsG0480018088.01.T01:five_prime_UTR 50.0%
ATGTGTGAGTTTGCCATCCC+TGG + Chr4:96730-96749 MsG0480018088.01.T01:CDS 50.0%
CGGCAGATATTCGATGAGGT+TGG + Chr4:96617-96636 MsG0480018088.01.T01:five_prime_UTR 50.0%
GAACTGGACTGACAACTGAC+AGG - Chr4:96159-96178 None:intergenic 50.0%
GATCGCTCGCAATTGCCAAT+TGG - Chr4:96206-96225 None:intergenic 50.0%
GGGATGGCAAACTCACACAT+AGG - Chr4:96730-96749 None:intergenic 50.0%
GGTAAGGAAGGCAGATGAAG+AGG + Chr4:97195-97214 MsG0480018088.01.T01:CDS 50.0%
GTCCGTAAACTCATGCTCAG+GGG + Chr4:96811-96830 MsG0480018088.01.T01:CDS 50.0%
!! GTTGGTGCTACTAGCCGTAT+AGG + Chr4:96778-96797 MsG0480018088.01.T01:CDS 50.0%
!! TCTCTTCGGGTTGATCAGCA+AGG + Chr4:97350-97369 MsG0480018088.01.T01:intron 50.0%
ACTGCCCGCTCAACTATCAC+TGG + Chr4:97324-97343 MsG0480018088.01.T01:intron 55.0%
AGGAGGCAGTCGTTGTACAG+AGG - Chr4:96460-96479 None:intergenic 55.0%
AGGTGGTAGAGCTGCTTCCA+AGG + Chr4:97215-97234 MsG0480018088.01.T01:CDS 55.0%
AGTGATAGTTGAGCGGGCAG+TGG - Chr4:97325-97344 None:intergenic 55.0%
CAGTCGTTGTACAGAGGAGC+GGG - Chr4:96454-96473 None:intergenic 55.0%
CGATCTTCGACCAAGTCCCA+CGG - Chr4:96597-96616 None:intergenic 55.0%
CGCTCGCAATTGCCAATTGG+AGG - Chr4:96203-96222 None:intergenic 55.0%
GATCTTCGACCAAGTCCCAC+GGG - Chr4:96596-96615 None:intergenic 55.0%
GCAGTCGTTGTACAGAGGAG+CGG - Chr4:96455-96474 None:intergenic 55.0%
GCTCAGGGGTTACTCTGTCA+AGG + Chr4:96825-96844 MsG0480018088.01.T01:CDS 55.0%
GTCTTGCCATCCCTGGTGTT+TGG - Chr4:96495-96514 None:intergenic 55.0%
! ATCCCTGGTGTTTGGAGCAG+CGG - Chr4:96487-96506 None:intergenic 55.0%
! CTGGACTGGGTCAGATCTCT+AGG + Chr4:96650-96669 MsG0480018088.01.T01:five_prime_UTR 55.0%
! GTGTTTGGAGCAGCGGCTAT+AGG - Chr4:96480-96499 None:intergenic 55.0%
! TCTTGCTGTCTTGCCATCCC+TGG - Chr4:96502-96521 None:intergenic 55.0%
! TGGGACTTGGTCGAAGATCG+CGG + Chr4:96597-96616 MsG0480018088.01.T01:five_prime_UTR 55.0%
! TTTGGAGCAGCGGCTATAGG+AGG - Chr4:96477-96496 None:intergenic 55.0%
!!! AGGAGCGGGTATGCTGCTTT+TGG - Chr4:96440-96459 None:intergenic 55.0%
AGCCGCTGCTCCAAACACCA+GGG + Chr4:96482-96501 MsG0480018088.01.T01:five_prime_UTR 60.0%
CAATGGCTCAGTTGCGCGCT+GGG + Chr4:97413-97432 MsG0480018088.01.T01:intron 60.0%
GCTGCTCCAAACACCAGGGA+TGG + Chr4:96486-96505 MsG0480018088.01.T01:five_prime_UTR 60.0%
TAGCCGCTGCTCCAAACACC+AGG + Chr4:96481-96500 MsG0480018088.01.T01:five_prime_UTR 60.0%
TCAATGGCTCAGTTGCGCGC+TGG + Chr4:97412-97431 MsG0480018088.01.T01:intron 60.0%
TCTCGACGACGTCAACCCGT+GGG + Chr4:96578-96597 MsG0480018088.01.T01:five_prime_UTR 60.0%
CGACGTCAACCCGTGGGACT+TGG + Chr4:96584-96603 MsG0480018088.01.T01:five_prime_UTR 65.0%
GTCTCGACGACGTCAACCCG+TGG + Chr4:96577-96596 MsG0480018088.01.T01:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 96152 97783 96152 ID=MsG0480018088.01;Name=MsG0480018088.01
Chr4 mRNA 96152 97783 96152 ID=MsG0480018088.01.T01;Parent=MsG0480018088.01;Name=MsG0480018088.01.T01;_AED=0.48;_eAED=0.48;_QI=578|0.66|0.25|1|1|1|4|0|119
Chr4 exon 96152 96846 96152 ID=MsG0480018088.01.T01:exon:390;Parent=MsG0480018088.01.T01
Chr4 exon 97190 97236 97190 ID=MsG0480018088.01.T01:exon:391;Parent=MsG0480018088.01.T01
Chr4 exon 97490 97602 97490 ID=MsG0480018088.01.T01:exon:392;Parent=MsG0480018088.01.T01
Chr4 exon 97701 97783 97701 ID=MsG0480018088.01.T01:exon:393;Parent=MsG0480018088.01.T01
Chr4 five_prime_UTR 96152 96729 96152 ID=MsG0480018088.01.T01:five_prime_utr;Parent=MsG0480018088.01.T01
Chr4 CDS 96730 96846 96730 ID=MsG0480018088.01.T01:cds;Parent=MsG0480018088.01.T01
Chr4 CDS 97190 97236 97190 ID=MsG0480018088.01.T01:cds;Parent=MsG0480018088.01.T01
Chr4 CDS 97490 97602 97490 ID=MsG0480018088.01.T01:cds;Parent=MsG0480018088.01.T01
Chr4 CDS 97701 97783 97701 ID=MsG0480018088.01.T01:cds;Parent=MsG0480018088.01.T01
Gene Sequence

>MsG0480018088.01.T01

ATGTGTGAGTTTGCCATCCCTGGTGCTCAGAATACTACTGTACTTGTTGTTGGTGCTACTAGCCGTATAGGTCGAATTGTTGTCCGTAAACTCATGCTCAGGGGTTACTCTGTCAAGGCTTTGGTAAGGAAGGCAGATGAAGAGGTGGTAGAGCTGCTTCCAAGATGGATGGAAGTTCGTCAAGGAACTTACTTCGAAGATGTAGTTACCTCAAAATATGATGGAGGGATGGATGCCAAATTTGAGTTCACTGAGAATGGAGCTGCTGTTTTCTCAGGGTATGTCTTCAATAGAGGTGGCTATGTAGAACTGTCAAAAAAGCTTTCTCTACCTTTGGGTAGTACTCTTGACAGGTATTAG

Protein sequence

>MsG0480018088.01.T01

MCEFAIPGAQNTTVLVVGATSRIGRIVVRKLMLRGYSVKALVRKADEEVVELLPRWMEVRQGTYFEDVVTSKYDGGMDAKFEFTENGAAVFSGYVFNRGGYVELSKKLSLPLGSTLDRY*