AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023708.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023708.01.T01 MTR_8g099665 96.739 368 9 2 1 365 1 368 0.0 717
MsG0480023708.01.T01 MTR_1g090400 45.161 186 91 4 180 364 193 368 4.89e-46 161
MsG0480023708.01.T01 MTR_7g104720 43.373 166 83 3 201 364 248 404 3.48e-41 149
MsG0480023708.01.T01 MTR_7g106500 37.719 228 113 6 153 364 64 278 2.43e-40 144
MsG0480023708.01.T01 MTR_3g017490 44.937 158 76 4 210 364 111 260 4.57e-36 132
MsG0480023708.01.T01 MTR_5g083110 44.304 158 79 4 209 365 90 239 6.22e-36 131
MsG0480023708.01.T01 MTR_8g106900 45.181 166 81 3 204 364 113 273 6.10e-35 129
MsG0480023708.01.T01 MTR_7g090230 39.752 161 81 4 210 364 274 424 5.18e-32 125
MsG0480023708.01.T01 MTR_7g010090 30.476 315 156 10 88 364 142 431 9.89e-32 124
MsG0480023708.01.T01 MTR_8g038440 41.176 153 84 3 214 364 106 254 1.55e-30 117
MsG0480023708.01.T01 MTR_6g011640 37.129 202 105 6 180 364 200 396 3.55e-30 119
MsG0480023708.01.T01 MTR_1g051180 37.870 169 85 4 208 364 203 363 2.67e-29 116
MsG0480023708.01.T01 MTR_5g072400 41.139 158 82 4 210 365 106 254 5.41e-28 110
MsG0480023708.01.T01 MTR_3g465550 39.735 151 83 4 210 359 84 227 3.84e-27 107
MsG0480023708.01.T01 MTR_3g071510 35.714 154 90 4 213 365 90 235 6.77e-25 102
MsG0480023708.01.T01 MTR_3g030520 37.267 161 80 5 221 364 142 298 4.51e-21 92.4
MsG0480023708.01.T01 MTR_7g079015 38.542 96 51 4 254 345 1 92 8.77e-13 64.3
MsG0480023708.01.T01 MTR_2g026830 38.043 92 53 3 254 345 1 88 4.61e-12 62.4
MsG0480023708.01.T01 MTR_1g098230 39.286 84 44 3 266 345 12 92 1.53e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023708.01.T01 AT1G64500 43.117 385 180 13 1 365 1 366 9.21e-93 282
MsG0480023708.01.T01 AT5G06470 37.652 247 108 8 147 364 9 238 2.01e-41 145
MsG0480023708.01.T01 AT4G10630 42.424 198 101 5 179 364 137 333 3.45e-41 147
MsG0480023708.01.T01 AT5G03870 42.654 211 103 5 156 364 189 383 5.09e-40 145
MsG0480023708.01.T01 AT5G39865 33.333 291 156 7 88 364 122 388 1.63e-39 144
MsG0480023708.01.T01 AT5G01420 41.317 167 90 3 199 364 241 400 5.12e-37 138
MsG0480023708.01.T01 AT3G28850 41.011 178 80 3 212 364 249 426 7.37e-35 133
MsG0480023708.01.T01 AT3G57070 41.401 157 85 3 210 364 264 415 1.86e-34 131
MsG0480023708.01.T01 AT1G32760 46.784 171 84 3 199 364 145 313 3.99e-33 125
MsG0480023708.01.T01 AT5G13810 41.509 159 80 5 210 364 123 272 6.11e-32 121
MsG0480023708.01.T01 AT5G58530 39.752 161 87 4 210 364 109 265 1.03e-30 118
MsG0480023708.01.T01 AT2G41330 40.397 151 82 3 216 364 256 400 3.26e-30 119
MsG0480023708.01.T01 AT3G11773 42.000 150 77 3 216 364 9 149 1.18e-29 112
MsG0480023708.01.T01 AT3G11773 29.596 223 111 6 156 364 9 199 3.16e-17 79.7

Find 109 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTGAAGGGTAGGTATT+TGG 0.146439 4:+88825307 MsG0480023708.01.T01:CDS
TCGAGAGAATAGAAAGATTA+AGG 0.197504 4:+88825033 MsG0480023708.01.T01:CDS
CAACAAAGCAAGAGACTTAT+TGG 0.220866 4:+88825163 MsG0480023708.01.T01:CDS
GGGTTAGATTTGTTCCTTGT+TGG 0.297441 4:+88825441 MsG0480023708.01.T01:CDS
GGGTGGGTTGGATGAGTTGA+TGG 0.303606 4:+88825328 MsG0480023708.01.T01:CDS
TTATTATCGGAGGAAGAGTT+AGG 0.318401 4:+88825260 MsG0480023708.01.T01:CDS
GAGACTTATTGGAGAATCAT+AGG 0.318410 4:+88825174 MsG0480023708.01.T01:CDS
TTTGTGAAGGGTAGGTATTT+GGG 0.321727 4:+88825308 MsG0480023708.01.T01:CDS
AGTGAAGGAGTTGTTATTAT+CGG 0.324310 4:+88825247 MsG0480023708.01.T01:CDS
CGTCGGTGGTGGCTGGTATA+CGG 0.337782 4:-88824508 None:intergenic
AGTTGTAAGTTGGTTACTGC+TGG 0.359692 4:+88825476 MsG0480023708.01.T01:CDS
TTCTTGGGAGATGGTGTTGT+TGG 0.375160 4:-88824592 None:intergenic
ACTACGGCGTCGTTTCCATT+TGG 0.388509 4:-88825092 None:intergenic
GGTTAGATTTGTTCCTTGTT+GGG 0.389547 4:+88825442 MsG0480023708.01.T01:CDS
AAGGGTGTGGTGGATGTGGT+GGG 0.409163 4:+88825420 MsG0480023708.01.T01:CDS
CAAGGGTGTGGTGGATGTGG+TGG 0.419400 4:+88825419 MsG0480023708.01.T01:CDS
GGGTTGGTGTGGTCTTGCCA+AGG 0.424049 4:+88825282 MsG0480023708.01.T01:CDS
CTTAATGAAACGGGTCGACT+TGG 0.425286 4:+88825353 MsG0480023708.01.T01:CDS
GAAATAAATTAAAGACAAGT+AGG 0.431871 4:-88825548 None:intergenic
GAACAGCGGGTTTGAGTTGT+TGG 0.436431 4:-88824704 None:intergenic
GGTGATGGTGGTGTTGGTTG+AGG 0.438551 4:-88824735 None:intergenic
AGACAAGGGTGTGGTGGATG+TGG 0.440591 4:+88825416 MsG0480023708.01.T01:CDS
GAGCGTGACGTGGCACTTCA+TGG 0.441197 4:+88825209 MsG0480023708.01.T01:CDS
CTAACTTCATCCCATGATTG+AGG 0.443754 4:-88824672 None:intergenic
TTGTGGTGGGAGTTGTAAGT+TGG 0.448165 4:+88825466 MsG0480023708.01.T01:CDS
TTTCTGGATAGTTGCTTAGT+GGG 0.451141 4:-88825061 None:intergenic
GGGTAGGTATTTGGGTGGGT+TGG 0.455353 4:+88825316 MsG0480023708.01.T01:CDS
AGAATAGGAGGAGGTAGAGC+AGG 0.459393 4:-88824621 None:intergenic
GACGGTGGTGATGGTGGTGT+TGG 0.459996 4:-88824741 None:intergenic
ACGGCGTCGTTTCCATTTGG+TGG 0.460113 4:-88825089 None:intergenic
GTTGTAAGTTGGTTACTGCT+GGG 0.466872 4:+88825477 MsG0480023708.01.T01:CDS
TTTCAGTAGCTTCGAGGATG+TGG 0.473934 4:-88824644 None:intergenic
TTCCTTGTTGGGATTGTGGT+GGG 0.474378 4:+88825453 MsG0480023708.01.T01:CDS
TGCCCCAAGTGTAATGAGAA+TGG 0.478008 4:+88825512 MsG0480023708.01.T01:CDS
CGAAACTCGTCGGTGGTGGC+TGG 0.479813 4:-88824515 None:intergenic
GTTGATGGAGCTTAATGAAA+CGG 0.485172 4:+88825343 MsG0480023708.01.T01:CDS
GTTGGTTGAGATTGTGGTTG+TGG 0.490105 4:-88824882 None:intergenic
GCTTCGAGGATGTGGAGAAT+AGG 0.490320 4:-88824636 None:intergenic
TATTATCGGAGGAAGAGTTA+GGG 0.490482 4:+88825261 MsG0480023708.01.T01:CDS
TGGTGTTGTTGGTGTTGTTG+AGG 0.493565 4:-88824581 None:intergenic
GGTGGTGATGACGGTGGTGA+TGG 0.493874 4:-88824750 None:intergenic
GCAACCTTACGTGGTGGTTG+TGG 0.496711 4:-88824783 None:intergenic
GGTTGGTGTGGTCTTGCCAA+GGG 0.497158 4:+88825283 MsG0480023708.01.T01:CDS
GCCCCAAGTGTAATGAGAAT+GGG 0.500482 4:+88825513 MsG0480023708.01.T01:CDS
GGTTGTGGTTGTTGCGATGG+TGG 0.504135 4:-88824768 None:intergenic
TTGATGGAGCTTAATGAAAC+GGG 0.505824 4:+88825344 MsG0480023708.01.T01:CDS
TGAGGAAGTTGTTGAACAGC+GGG 0.508452 4:-88824717 None:intergenic
TTCTTCGTTGGTTGAGATTG+TGG 0.509177 4:-88824888 None:intergenic
TAACCCATTCTCATTACACT+TGG 0.509664 4:-88825516 None:intergenic
TTGCCAAGGGTGTTTGTGAA+GGG 0.511271 4:+88825296 MsG0480023708.01.T01:CDS
TGGCTGGTATACGGCGGGTG+CGG 0.511794 4:-88824499 None:intergenic
AACCCATTCTCATTACACTT+GGG 0.515602 4:-88825515 None:intergenic
GGTGATGACGGTGGTGATGG+TGG 0.516672 4:-88824747 None:intergenic
CTTGCCAAGGGTGTTTGTGA+AGG 0.518157 4:+88825295 MsG0480023708.01.T01:CDS
GTGAAGGGTAGGTATTTGGG+TGG 0.520089 4:+88825311 MsG0480023708.01.T01:CDS
ACCGCGAAACTCGTCGGTGG+TGG 0.521658 4:-88824519 None:intergenic
TCGGAGGAAGAGTTAGGGGT+TGG 0.522640 4:+88825266 MsG0480023708.01.T01:CDS
GGTGGTTGTGGTTGTTGCGA+TGG 0.524805 4:-88824771 None:intergenic
TGAAGGGTAGGTATTTGGGT+GGG 0.529660 4:+88825312 MsG0480023708.01.T01:CDS
AGGGTGTGGTGGATGTGGTG+GGG 0.535711 4:+88825421 MsG0480023708.01.T01:CDS
AGGATGTGGAGAATAGGAGG+AGG 0.536843 4:-88824630 None:intergenic
GCCACCACCGACGAGTTTCG+CGG 0.538659 4:+88824518 MsG0480023708.01.T01:CDS
ACGAAGAACGTTGTTGATGT+TGG 0.540254 4:+88824903 MsG0480023708.01.T01:CDS
AGACATACTAGAGAAACAAA+AGG 0.541873 4:+88824992 MsG0480023708.01.T01:CDS
TTGTAAGTTGGTTACTGCTG+GGG 0.542030 4:+88825478 MsG0480023708.01.T01:CDS
GTTGGAAGACAAGGGTGTGG+TGG 0.542555 4:+88825410 MsG0480023708.01.T01:CDS
GGTGGTGGCTGGTATACGGC+GGG 0.546279 4:-88824504 None:intergenic
ACCCATTCTCATTACACTTG+GGG 0.546633 4:-88825514 None:intergenic
AGACTTATTGGAGAATCATA+GGG 0.547504 4:+88825175 MsG0480023708.01.T01:CDS
ACATCAACAACGTTCTTCGT+TGG 0.551192 4:-88824900 None:intergenic
TTTGTTCCTTGTTGGGATTG+TGG 0.552057 4:+88825449 MsG0480023708.01.T01:CDS
CTACCCTTCACAAACACCCT+TGG 0.555761 4:-88825299 None:intergenic
ACAACCACAACCACCACGTA+AGG 0.559602 4:+88824779 MsG0480023708.01.T01:CDS
TAACTCTTCGAGTGTGTGAA+AGG 0.560614 4:-88824808 None:intergenic
ATTAAAGACAAGTAGGGCAA+TGG 0.560759 4:-88825541 None:intergenic
TCGAGGATGTGGAGAATAGG+AGG 0.560778 4:-88824633 None:intergenic
GAGAGAGGTGTTGGAAGACA+AGG 0.562632 4:+88825401 MsG0480023708.01.T01:CDS
ACACGTGTGGAGAGAGGTGT+TGG 0.566087 4:+88825392 MsG0480023708.01.T01:CDS
CAAGGGTGTTTGTGAAGGGT+AGG 0.566480 4:+88825300 MsG0480023708.01.T01:CDS
TTAATGAAACGGGTCGACTT+GGG 0.568465 4:+88825354 MsG0480023708.01.T01:CDS
TTTGTCATCATCAAAACTGA+AGG 0.573178 4:+88824950 MsG0480023708.01.T01:CDS
TGTTGCGATGGTGGTGATGA+CGG 0.575646 4:-88824759 None:intergenic
AAATAAATTAAAGACAAGTA+GGG 0.576677 4:-88825547 None:intergenic
ATTATCGGAGGAAGAGTTAG+GGG 0.578446 4:+88825262 MsG0480023708.01.T01:CDS
CGGTGGTGGCTGGTATACGG+CGG 0.578466 4:-88824505 None:intergenic
GTTCCTTGTTGGGATTGTGG+TGG 0.579622 4:+88825452 MsG0480023708.01.T01:CDS
CGATGTTGTATATATTACTA+CGG 0.583173 4:-88825108 None:intergenic
GAGAATAGAAAGATTAAGGA+GGG 0.583465 4:+88825037 MsG0480023708.01.T01:CDS
GGTTGAGATTGTGGTTGTGG+TGG 0.587118 4:-88824879 None:intergenic
GAAGGAGTTGTTATTATCGG+AGG 0.597320 4:+88825250 MsG0480023708.01.T01:CDS
TGTAAGTTGGTTACTGCTGG+GGG 0.598859 4:+88825479 MsG0480023708.01.T01:CDS
GGTGTTGGAAGACAAGGGTG+TGG 0.601057 4:+88825407 MsG0480023708.01.T01:CDS
AGAGAGGTGTTGGAAGACAA+GGG 0.609103 4:+88825402 MsG0480023708.01.T01:CDS
GGAAGAGTTAGGGGTTGGTG+TGG 0.612906 4:+88825271 MsG0480023708.01.T01:CDS
AGAGAATAGAAAGATTAAGG+AGG 0.613300 4:+88825036 MsG0480023708.01.T01:CDS
ATGAAACGGGTCGACTTGGG+AGG 0.616823 4:+88825357 MsG0480023708.01.T01:CDS
GATATTGAATGCGACACGTG+TGG 0.626654 4:+88825379 MsG0480023708.01.T01:CDS
CTCCCACCACAATCCCAACA+AGG 0.638521 4:-88825455 None:intergenic
TAAACGCCATCGAAGAGCCA+TGG 0.640163 4:+88824550 MsG0480023708.01.T01:CDS
TTGAGGAAGTTGTTGAACAG+CGG 0.650382 4:-88824718 None:intergenic
TGTGTTTGATGAGCGTGACG+TGG 0.654924 4:+88825199 MsG0480023708.01.T01:CDS
TCGAACACCGCGAAACTCGT+CGG 0.663637 4:-88824525 None:intergenic
ATATATACAACATCGTTGAG+AGG 0.672095 4:+88825116 MsG0480023708.01.T01:CDS
AATGCGACACGTGTGGAGAG+AGG 0.678434 4:+88825386 MsG0480023708.01.T01:CDS
AACACCGCGAAACTCGTCGG+TGG 0.682439 4:-88824522 None:intergenic
TGAAAGGAAGCAACCTTACG+TGG 0.693400 4:-88824792 None:intergenic
AAGGAAGCAACCTTACGTGG+TGG 0.725083 4:-88824789 None:intergenic
TTGTTGATGTTGGTTCAGTG+AGG 0.729785 4:+88824913 MsG0480023708.01.T01:CDS
TGCGATGGTGGTGATGACGG+TGG 0.737769 4:-88824756 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CGATGTTGTATATATTACTA+CGG - Chr4:88825111-88825130 None:intergenic 25.0%
AGACATACTAGAGAAACAAA+AGG + Chr4:88824992-88825011 MsG0480023708.01.T01:CDS 30.0%
AGACTTATTGGAGAATCATA+GGG + Chr4:88825175-88825194 MsG0480023708.01.T01:CDS 30.0%
AGAGAATAGAAAGATTAAGG+AGG + Chr4:88825036-88825055 MsG0480023708.01.T01:CDS 30.0%
ATATATACAACATCGTTGAG+AGG + Chr4:88825116-88825135 MsG0480023708.01.T01:CDS 30.0%
GAGAATAGAAAGATTAAGGA+GGG + Chr4:88825037-88825056 MsG0480023708.01.T01:CDS 30.0%
TCGAGAGAATAGAAAGATTA+AGG + Chr4:88825033-88825052 MsG0480023708.01.T01:CDS 30.0%
TGAAAAATCTCCTCAATCAT+GGG + Chr4:88824662-88824681 MsG0480023708.01.T01:CDS 30.0%
TTTGTCATCATCAAAACTGA+AGG + Chr4:88824950-88824969 MsG0480023708.01.T01:CDS 30.0%
! ACTTCATGGAGAGTTTTTAA+AGG + Chr4:88825223-88825242 MsG0480023708.01.T01:CDS 30.0%
! AGTGAAGGAGTTGTTATTAT+CGG + Chr4:88825247-88825266 MsG0480023708.01.T01:CDS 30.0%
!! AGAGTTTTTAAAGGAAGTGA+AGG + Chr4:88825232-88825251 MsG0480023708.01.T01:CDS 30.0%
!!! AGTTTTGATGATGACAAAGA+TGG - Chr4:88824948-88824967 None:intergenic 30.0%
AACCCATTCTCATTACACTT+GGG - Chr4:88825518-88825537 None:intergenic 35.0%
CAACAAAGCAAGAGACTTAT+TGG + Chr4:88825163-88825182 MsG0480023708.01.T01:CDS 35.0%
CTGAAAAATCTCCTCAATCA+TGG + Chr4:88824661-88824680 MsG0480023708.01.T01:CDS 35.0%
GAGACTTATTGGAGAATCAT+AGG + Chr4:88825174-88825193 MsG0480023708.01.T01:CDS 35.0%
TAACCCATTCTCATTACACT+TGG - Chr4:88825519-88825538 None:intergenic 35.0%
TATTATCGGAGGAAGAGTTA+GGG + Chr4:88825261-88825280 MsG0480023708.01.T01:CDS 35.0%
TTATTATCGGAGGAAGAGTT+AGG + Chr4:88825260-88825279 MsG0480023708.01.T01:CDS 35.0%
TTGATGGAGCTTAATGAAAC+GGG + Chr4:88825344-88825363 MsG0480023708.01.T01:CDS 35.0%
TTTCTGGATAGTTGCTTAGT+GGG - Chr4:88825064-88825083 None:intergenic 35.0%
TTTGTGAAGGGTAGGTATTT+GGG + Chr4:88825308-88825327 MsG0480023708.01.T01:CDS 35.0%
! GGTTAGATTTGTTCCTTGTT+GGG + Chr4:88825442-88825461 MsG0480023708.01.T01:CDS 35.0%
! GTTGATGGAGCTTAATGAAA+CGG + Chr4:88825343-88825362 MsG0480023708.01.T01:CDS 35.0%
! TAGAGCAGGTTTTTCTTCTT+GGG - Chr4:88824610-88824629 None:intergenic 35.0%
! TTTTCTGGATAGTTGCTTAG+TGG - Chr4:88825065-88825084 None:intergenic 35.0%
ACATCAACAACGTTCTTCGT+TGG - Chr4:88824903-88824922 None:intergenic 40.0%
ACCCATTCTCATTACACTTG+GGG - Chr4:88825517-88825536 None:intergenic 40.0%
ACGAAGAACGTTGTTGATGT+TGG + Chr4:88824903-88824922 MsG0480023708.01.T01:CDS 40.0%
ATTATCGGAGGAAGAGTTAG+GGG + Chr4:88825262-88825281 MsG0480023708.01.T01:CDS 40.0%
CCAGAAAAATGTCCACCAAA+TGG + Chr4:88825077-88825096 MsG0480023708.01.T01:CDS 40.0%
CTAACTTCATCCCATGATTG+AGG - Chr4:88824675-88824694 None:intergenic 40.0%
GTTTGTGAAGGGTAGGTATT+TGG + Chr4:88825307-88825326 MsG0480023708.01.T01:CDS 40.0%
TAACTCTTCGAGTGTGTGAA+AGG - Chr4:88824811-88824830 None:intergenic 40.0%
TTGAGGAAGTTGTTGAACAG+CGG - Chr4:88824721-88824740 None:intergenic 40.0%
TTTGTTCCTTGTTGGGATTG+TGG + Chr4:88825449-88825468 MsG0480023708.01.T01:CDS 40.0%
! AGGTTTTTCTTCTTGGGAGA+TGG - Chr4:88824604-88824623 None:intergenic 40.0%
! GAAGGAGTTGTTATTATCGG+AGG + Chr4:88825250-88825269 MsG0480023708.01.T01:CDS 40.0%
! GGGTTAGATTTGTTCCTTGT+TGG + Chr4:88825441-88825460 MsG0480023708.01.T01:CDS 40.0%
! GTAGAGCAGGTTTTTCTTCT+TGG - Chr4:88824611-88824630 None:intergenic 40.0%
! TTAATGAAACGGGTCGACTT+GGG + Chr4:88825354-88825373 MsG0480023708.01.T01:CDS 40.0%
! TTCTTCGTTGGTTGAGATTG+TGG - Chr4:88824891-88824910 None:intergenic 40.0%
!! AGTTGTAAGTTGGTTACTGC+TGG + Chr4:88825476-88825495 MsG0480023708.01.T01:CDS 40.0%
!! CCATTTGGTGGACATTTTTC+TGG - Chr4:88825080-88825099 None:intergenic 40.0%
!! GAGATTTTTCAGTAGCTTCG+AGG - Chr4:88824653-88824672 None:intergenic 40.0%
!! GGGACTCGTTTTTCTTCTTT+GGG - Chr4:88824848-88824867 None:intergenic 40.0%
!! GTTGTAAGTTGGTTACTGCT+GGG + Chr4:88825477-88825496 MsG0480023708.01.T01:CDS 40.0%
!! TGGGACTCGTTTTTCTTCTT+TGG - Chr4:88824849-88824868 None:intergenic 40.0%
!! TTGTAAGTTGGTTACTGCTG+GGG + Chr4:88825478-88825497 MsG0480023708.01.T01:CDS 40.0%
!! TTGTTGATGTTGGTTCAGTG+AGG + Chr4:88824913-88824932 MsG0480023708.01.T01:CDS 40.0%
!!! TTGTGGTGGTTTTAGTGACT+GGG - Chr4:88824868-88824887 None:intergenic 40.0%
!!! TTGTTGAGGTGTTTTAGCCA+TGG - Chr4:88824570-88824589 None:intergenic 40.0%
CTTAATGAAACGGGTCGACT+TGG + Chr4:88825353-88825372 MsG0480023708.01.T01:CDS 45.0%
GATATTGAATGCGACACGTG+TGG + Chr4:88825379-88825398 MsG0480023708.01.T01:CDS 45.0%
GCCCCAAGTGTAATGAGAAT+GGG + Chr4:88825513-88825532 MsG0480023708.01.T01:CDS 45.0%
GTTGGTTGAGATTGTGGTTG+TGG - Chr4:88824885-88824904 None:intergenic 45.0%
TGAAAGGAAGCAACCTTACG+TGG - Chr4:88824795-88824814 None:intergenic 45.0%
TGAAGGGTAGGTATTTGGGT+GGG + Chr4:88825312-88825331 MsG0480023708.01.T01:CDS 45.0%
TGAGGAAGTTGTTGAACAGC+GGG - Chr4:88824720-88824739 None:intergenic 45.0%
TGCCCCAAGTGTAATGAGAA+TGG + Chr4:88825512-88825531 MsG0480023708.01.T01:CDS 45.0%
TTACTGCTGGGGGTGAAATA+AGG + Chr4:88825489-88825508 MsG0480023708.01.T01:CDS 45.0%
TTCCTTGTTGGGATTGTGGT+GGG + Chr4:88825453-88825472 MsG0480023708.01.T01:CDS 45.0%
TTTCAGTAGCTTCGAGGATG+TGG - Chr4:88824647-88824666 None:intergenic 45.0%
! TTGTGGTGGGAGTTGTAAGT+TGG + Chr4:88825466-88825485 MsG0480023708.01.T01:CDS 45.0%
! TTTTAGCCATGGCTCTTCGA+TGG - Chr4:88824559-88824578 None:intergenic 45.0%
!! AGAGAGGTGTTGGAAGACAA+GGG + Chr4:88825402-88825421 MsG0480023708.01.T01:CDS 45.0%
!! TGGTGTTGTTGGTGTTGTTG+AGG - Chr4:88824584-88824603 None:intergenic 45.0%
!! TGTAAGTTGGTTACTGCTGG+GGG + Chr4:88825479-88825498 MsG0480023708.01.T01:CDS 45.0%
!! TTCTTGGGAGATGGTGTTGT+TGG - Chr4:88824595-88824614 None:intergenic 45.0%
!! TTGCCAAGGGTGTTTGTGAA+GGG + Chr4:88825296-88825315 MsG0480023708.01.T01:CDS 45.0%
!!! GTTGTGGTGGTTTTAGTGAC+TGG - Chr4:88824869-88824888 None:intergenic 45.0%
AAGGAAGCAACCTTACGTGG+TGG - Chr4:88824792-88824811 None:intergenic 50.0%
ACAACCACAACCACCACGTA+AGG + Chr4:88824779-88824798 MsG0480023708.01.T01:CDS 50.0%
ACTACGGCGTCGTTTCCATT+TGG - Chr4:88825095-88825114 None:intergenic 50.0%
AGAATAGGAGGAGGTAGAGC+AGG - Chr4:88824624-88824643 None:intergenic 50.0%
AGGATGTGGAGAATAGGAGG+AGG - Chr4:88824633-88824652 None:intergenic 50.0%
CTACCCTTCACAAACACCCT+TGG - Chr4:88825302-88825321 None:intergenic 50.0%
GCTTCGAGGATGTGGAGAAT+AGG - Chr4:88824639-88824658 None:intergenic 50.0%
GGTTGAGATTGTGGTTGTGG+TGG - Chr4:88824882-88824901 None:intergenic 50.0%
GTGAAGGGTAGGTATTTGGG+TGG + Chr4:88825311-88825330 MsG0480023708.01.T01:CDS 50.0%
GTTCCTTGTTGGGATTGTGG+TGG + Chr4:88825452-88825471 MsG0480023708.01.T01:CDS 50.0%
TAAACGCCATCGAAGAGCCA+TGG + Chr4:88824550-88824569 MsG0480023708.01.T01:CDS 50.0%
TCGAGGATGTGGAGAATAGG+AGG - Chr4:88824636-88824655 None:intergenic 50.0%
TGTGTTTGATGAGCGTGACG+TGG + Chr4:88825199-88825218 MsG0480023708.01.T01:CDS 50.0%
! TGTTGCGATGGTGGTGATGA+CGG - Chr4:88824762-88824781 None:intergenic 50.0%
!! CAAGGGTGTTTGTGAAGGGT+AGG + Chr4:88825300-88825319 MsG0480023708.01.T01:CDS 50.0%
!! CTTGCCAAGGGTGTTTGTGA+AGG + Chr4:88825295-88825314 MsG0480023708.01.T01:CDS 50.0%
!! GAACAGCGGGTTTGAGTTGT+TGG - Chr4:88824707-88824726 None:intergenic 50.0%
!! GAGAGAGGTGTTGGAAGACA+AGG + Chr4:88825401-88825420 MsG0480023708.01.T01:CDS 50.0%
AATGCGACACGTGTGGAGAG+AGG + Chr4:88825386-88825405 MsG0480023708.01.T01:CDS 55.0%
ACGGCGTCGTTTCCATTTGG+TGG - Chr4:88825092-88825111 None:intergenic 55.0%
CTCCCACCACAATCCCAACA+AGG - Chr4:88825458-88825477 None:intergenic 55.0%
GCAACCTTACGTGGTGGTTG+TGG - Chr4:88824786-88824805 None:intergenic 55.0%
GGGTAGGTATTTGGGTGGGT+TGG + Chr4:88825316-88825335 MsG0480023708.01.T01:CDS 55.0%
GGTGGTTGTGGTTGTTGCGA+TGG - Chr4:88824774-88824793 None:intergenic 55.0%
GGTTGTGGTTGTTGCGATGG+TGG - Chr4:88824771-88824790 None:intergenic 55.0%
TCGAACACCGCGAAACTCGT+CGG - Chr4:88824528-88824547 None:intergenic 55.0%
TCGGAGGAAGAGTTAGGGGT+TGG + Chr4:88825266-88825285 MsG0480023708.01.T01:CDS 55.0%
! ACACGTGTGGAGAGAGGTGT+TGG + Chr4:88825392-88825411 MsG0480023708.01.T01:CDS 55.0%
! GGTGTTGGAAGACAAGGGTG+TGG + Chr4:88825407-88825426 MsG0480023708.01.T01:CDS 55.0%
! GGTTGGTGTGGTCTTGCCAA+GGG + Chr4:88825283-88825302 MsG0480023708.01.T01:CDS 55.0%
! GTTGGAAGACAAGGGTGTGG+TGG + Chr4:88825410-88825429 MsG0480023708.01.T01:CDS 55.0%
!! AAGGGTGTGGTGGATGTGGT+GGG + Chr4:88825420-88825439 MsG0480023708.01.T01:CDS 55.0%
!! AGACAAGGGTGTGGTGGATG+TGG + Chr4:88825416-88825435 MsG0480023708.01.T01:CDS 55.0%
!! ATGAAACGGGTCGACTTGGG+AGG + Chr4:88825357-88825376 MsG0480023708.01.T01:CDS 55.0%
!! GGAAGAGTTAGGGGTTGGTG+TGG + Chr4:88825271-88825290 MsG0480023708.01.T01:CDS 55.0%
!! GGGTGGGTTGGATGAGTTGA+TGG + Chr4:88825328-88825347 MsG0480023708.01.T01:CDS 55.0%
!! GGTGATGGTGGTGTTGGTTG+AGG - Chr4:88824738-88824757 None:intergenic 55.0%
AACACCGCGAAACTCGTCGG+TGG - Chr4:88824525-88824544 None:intergenic 60.0%
GAGCGTGACGTGGCACTTCA+TGG + Chr4:88825209-88825228 MsG0480023708.01.T01:CDS 60.0%
! CGTCGGTGGTGGCTGGTATA+CGG - Chr4:88824511-88824530 None:intergenic 60.0%
!! AGGGTGTGGTGGATGTGGTG+GGG + Chr4:88825421-88825440 MsG0480023708.01.T01:CDS 60.0%
!! CAAGGGTGTGGTGGATGTGG+TGG + Chr4:88825419-88825438 MsG0480023708.01.T01:CDS 60.0%
!! GACGGTGGTGATGGTGGTGT+TGG - Chr4:88824744-88824763 None:intergenic 60.0%
!! GGGTTGGTGTGGTCTTGCCA+AGG + Chr4:88825282-88825301 MsG0480023708.01.T01:CDS 60.0%
!! GGTGATGACGGTGGTGATGG+TGG - Chr4:88824750-88824769 None:intergenic 60.0%
!! GGTGGTGATGACGGTGGTGA+TGG - Chr4:88824753-88824772 None:intergenic 60.0%
!! TGCGATGGTGGTGATGACGG+TGG - Chr4:88824759-88824778 None:intergenic 60.0%
ACCGCGAAACTCGTCGGTGG+TGG - Chr4:88824522-88824541 None:intergenic 65.0%
GCCACCACCGACGAGTTTCG+CGG + Chr4:88824518-88824537 MsG0480023708.01.T01:CDS 65.0%
TGGCTGGTATACGGCGGGTG+CGG - Chr4:88824502-88824521 None:intergenic 65.0%
! CGAAACTCGTCGGTGGTGGC+TGG - Chr4:88824518-88824537 None:intergenic 65.0%
! CGGTGGTGGCTGGTATACGG+CGG - Chr4:88824508-88824527 None:intergenic 65.0%
! GGTGGTGGCTGGTATACGGC+GGG - Chr4:88824507-88824526 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 88824465 88825562 88824465 ID=MsG0480023708.01;Name=MsG0480023708.01
Chr4 mRNA 88824465 88825562 88824465 ID=MsG0480023708.01.T01;Parent=MsG0480023708.01;Name=MsG0480023708.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|365
Chr4 exon 88824465 88825562 88824465 ID=MsG0480023708.01.T01:exon:13000;Parent=MsG0480023708.01.T01
Chr4 CDS 88824465 88825562 88824465 ID=MsG0480023708.01.T01:cds;Parent=MsG0480023708.01.T01
Gene Sequence

>MsG0480023708.01.T01

ATGGGGTGTGCTAACTCTAAACGTATAGAAGCAACCGCACCCGCCGTATACCAGCCACCACCGACGAGTTTCGCGGTGTTCGACATAAACGCCATCGAAGAGCCATGGCTAAAACACCTCAACAACACCAACAACACCATCTCCCAAGAAGAAAAACCTGCTCTACCTCCTCCTATTCTCCACATCCTCGAAGCTACTGAAAAATCTCCTCAATCATGGGATGAAGTTAGCAAAACACTCCAACAACTCAAACCCGCTGTTCAACAACTTCCTCAACCAACACCACCATCACCACCGTCATCACCACCATCGCAACAACCACAACCACCACGTAAGGTTGCTTCCTTTCACACACTCGAAGAGTTAGATGCAAAGTCAAGCCCAAAGAAGAAAAACGAGTCCCAGTCACTAAAACCACCACAACCACAATCTCAACCAACGAAGAACGTTGTTGATGTTGGTTCAGTGAGGACATTAAAACCATCTTTGTCATCATCAAAACTGAAGGATAACATATTCATACAACGAGACATACTAGAGAAACAAAAGGAAGAGAAAGAATCGAATTTCGAGAGAATAGAAAGATTAAGGAGGGACCCACTAAGCAACTATCCAGAAAAATGTCCACCAAATGGAAACGACGCCGTAGTAATATATACAACATCGTTGAGAGGTGTAAGAAAGACGTTTGATAACTGCAACAAAGCAAGAGACTTATTGGAGAATCATAGGGTTGTGTTTGATGAGCGTGACGTGGCACTTCATGGAGAGTTTTTAAAGGAAGTGAAGGAGTTGTTATTATCGGAGGAAGAGTTAGGGGTTGGTGTGGTCTTGCCAAGGGTGTTTGTGAAGGGTAGGTATTTGGGTGGGTTGGATGAGTTGATGGAGCTTAATGAAACGGGTCGACTTGGGAGGATATTGAATGCGACACGTGTGGAGAGAGGTGTTGGAAGACAAGGGTGTGGTGGATGTGGTGGGGTTAGATTTGTTCCTTGTTGGGATTGTGGTGGGAGTTGTAAGTTGGTTACTGCTGGGGGTGAAATAAGGTGCCCCAAGTGTAATGAGAATGGGTTAGTCCATTGCCCTACTTGTCTTTAA

Protein sequence

>MsG0480023708.01.T01

MGCANSKRIEATAPAVYQPPPTSFAVFDINAIEEPWLKHLNNTNNTISQEEKPALPPPILHILEATEKSPQSWDEVSKTLQQLKPAVQQLPQPTPPSPPSSPPSQQPQPPRKVASFHTLEELDAKSSPKKKNESQSLKPPQPQSQPTKNVVDVGSVRTLKPSLSSSKLKDNIFIQRDILEKQKEEKESNFERIERLRRDPLSNYPEKCPPNGNDAVVIYTTSLRGVRKTFDNCNKARDLLENHRVVFDERDVALHGEFLKEVKELLLSEEELGVGVVLPRVFVKGRYLGGLDELMELNETGRLGRILNATRVERGVGRQGCGGCGGVRFVPCWDCGGSCKLVTAGGEIRCPKCNENGLVHCPTCL*