AlfalfaGEDB | MsG0280008733.01

M. sativa cultivar ZhongmuNo.1 / MsG0280008733.01

KEGG: -
GO: GO:0004553 GO:0005515 GO:0005975
PFAM: PF00722 PF01535

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008733.01.T01	XP_003595547.1	93.701	127	8	0	248	374	157	283	4.02E-82	262

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008733.01.T01	Q9LR69	40.805	174	68	4	1	148	309	473	1.40E-28	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008733.01.T01	G7IIT4	93.701	127	8	0	248	374	157	283	1.92e-82	262

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048461.01	MsG0280008733.01	0.814884	1.227534e-51	8.335877e-49
MsG0080048462.01	MsG0280008733.01	0.817368	3.419423e-52	2.485438e-49
MsG0080048785.01	MsG0280008733.01	0.807177	5.740331e-50	3.175673e-47
MsG0080048856.01	MsG0280008733.01	0.811843	5.714940e-51	3.575641e-48
MsG0080048926.01	MsG0280008733.01	0.805713	1.168636e-49	6.226942e-47
MsG0080049148.01	MsG0280008733.01	0.805235	1.472508e-49	7.749718e-47
MsG0180000145.01	MsG0280008733.01	0.830266	3.234658e-55	3.391151e-52
MsG0180000334.01	MsG0280008733.01	0.819805	9.576726e-53	7.445830e-50
MsG0180000335.01	MsG0280008733.01	0.826941	2.057057e-54	1.957322e-51
MsG0180000470.01	MsG0280008733.01	0.855329	6.787961e-62	1.561644e-58

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008733.01.T01	MTR_2g049130	93.701	127	8	0	248	374	157	283	4.86e-86	262
MsG0280008733.01.T01	MTR_2g048855	66.286	175	25	4	1	149	301	467	2.89e-63	213
MsG0280008733.01.T01	MTR_2g048855	38.813	219	110	8	1	215	399	597	4.10e-29	119
MsG0280008733.01.T01	MTR_2g049030	67.460	126	41	0	248	373	156	281	3.12e-58	191
MsG0280008733.01.T01	MTR_7g056090	43.548	124	68	2	248	369	159	282	1.64e-30	118
MsG0280008733.01.T01	MTR_8g013055	42.609	115	63	2	248	359	158	272	1.59e-27	110
MsG0280008733.01.T01	MTR_6g033085	43.077	130	64	8	248	368	159	287	9.30e-20	89.0
MsG0280008733.01.T01	MTR_6g033055	42.735	117	61	6	248	359	159	274	5.46e-18	84.0
MsG0280008733.01.T01	MTR_2g089140	34.839	155	88	6	218	360	58	211	1.00e-17	81.6
MsG0280008733.01.T01	MTR_2g089140	34.839	155	88	6	218	360	121	274	1.37e-17	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008733.01.T01	AT1G03540	40.805	174	68	4	1	148	309	473	1.42e-29	120
MsG0280008733.01.T01	AT1G03540	32.240	183	103	6	1	178	406	572	4.86e-18	86.3
MsG0280008733.01.T01	AT4G13090	43.802	121	63	3	248	363	159	279	2.32e-27	110
MsG0280008733.01.T01	AT4G13080	42.373	118	64	3	248	362	165	281	1.25e-25	105
MsG0280008733.01.T01	AT3G25050	36.129	155	91	5	215	364	130	281	1.02e-24	102
MsG0280008733.01.T01	AT5G13870	37.063	143	84	6	225	362	136	277	1.75e-19	88.2
MsG0280008733.01.T01	AT5G13870	37.063	143	84	6	225	362	136	277	1.75e-19	88.2
MsG0280008733.01.T01	AT5G13870	37.063	143	84	6	225	362	136	277	1.75e-19	88.2
MsG0280008733.01.T01	AT2G06850	36.242	149	90	5	218	362	73	220	1.13e-18	84.7
MsG0280008733.01.T01	AT4G37800	35.915	142	86	5	225	362	139	279	1.72e-18	85.5

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Find 106 sgRNAs with CRISPR-Local

Find 539 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATATGGTATGGCCCAT+GGG	0.458749	2:+37419304	MsG0280008733.01.T01:CDS
AAGAATACCACAGATAAAGG+AGG	0.673325	2:+37419248	MsG0280008733.01.T01:CDS
AAGGGAAGGAAGGATTAGAA+TGG	0.572953	2:+37413339	MsG0280008733.01.T01:CDS
AATGTAATTCCTTTAGGTAT+TGG	0.362719	2:+37419429	MsG0280008733.01.T01:CDS
AATGTTGTGCAGATATGTCT+CGG	0.688475	2:+37416551	MsG0280008733.01.T01:intron
AATTACATTGTTCGATATTA+GGG	0.261145	2:-37419415	None:intergenic
ACAATATGGTATGGCCCATG+GGG	0.669059	2:+37419305	MsG0280008733.01.T01:CDS
ACATAACTCAAATGGAAGTC+AGG	0.454182	2:-37412410	None:intergenic
ACGTTATCATTGAGTCTGCA+TGG	0.588454	2:+37411919	MsG0280008733.01.T01:CDS
AGAAGATACACACTCAAAAT+TGG	0.315970	2:+37413392	MsG0280008733.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACTATGCTCCTCTAT+GGG	+	Chr2:37418237-37418256	MsG0280008733.01.T01:intron	30.0%
AAATAGAGGGGTTAAGAAAA+TGG	+	Chr2:37412501-37412520	MsG0280008733.01.T01:intron	30.0%
AAATGAAGCGTAAAAATGGA+AGG	-	Chr2:37414469-37414488	None:intergenic	30.0%
AATATTCCTTATGAAGATGG+CGG	+	Chr2:37416722-37416741	MsG0280008733.01.T01:intron	30.0%
AATCTCAATCTGCTTTCAAA+AGG	-	Chr2:37415089-37415108	None:intergenic	30.0%
AATTGCATGATTGATCTGTT+GGG	+	Chr2:37412233-37412252	MsG0280008733.01.T01:intron	30.0%
AGAAGATACACACTCAAAAT+TGG	+	Chr2:37413392-37413411	MsG0280008733.01.T01:CDS	30.0%
AGAGGTAACACCTATTAAAA+TGG	+	Chr2:37415504-37415523	MsG0280008733.01.T01:intron	30.0%
AGGAATAATATGTGACAAGA+CGG	+	Chr2:37417599-37417618	MsG0280008733.01.T01:intron	30.0%
AGGTAACACCTATTAAAATG+GGG	+	Chr2:37415506-37415525	MsG0280008733.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	37411654	37419589	37411654	ID=MsG0280008733.01;Name=MsG0280008733.01
Chr2	mRNA	37411654	37419589	37411654	ID=MsG0280008733.01.T01;Parent=MsG0280008733.01;Name=MsG0280008733.01.T01;_AED=0.43;_eAED=0.44;_QI=0\|0\|0\|0.66\|1\|1\|6\|0\|374
Chr2	exon	37411654	37411962	37411654	ID=MsG0280008733.01.T01:exon:62000;Parent=MsG0280008733.01.T01
Chr2	exon	37412039	37412133	37412039	ID=MsG0280008733.01.T01:exon:62001;Parent=MsG0280008733.01.T01
Chr2	exon	37412310	37412456	37412310	ID=MsG0280008733.01.T01:exon:62002;Parent=MsG0280008733.01.T01
Chr2	exon	37413271	37413413	37413271	ID=MsG0280008733.01.T01:exon:62003;Parent=MsG0280008733.01.T01
Chr2	exon	37416563	37416617	37416563	ID=MsG0280008733.01.T01:exon:62004;Parent=MsG0280008733.01.T01
Chr2	exon	37419214	37419589	37419214	ID=MsG0280008733.01.T01:exon:62005;Parent=MsG0280008733.01.T01
Chr2	CDS	37411654	37411962	37411654	ID=MsG0280008733.01.T01:cds;Parent=MsG0280008733.01.T01
Chr2	CDS	37412039	37412133	37412039	ID=MsG0280008733.01.T01:cds;Parent=MsG0280008733.01.T01
Chr2	CDS	37412310	37412456	37412310	ID=MsG0280008733.01.T01:cds;Parent=MsG0280008733.01.T01
Chr2	CDS	37413271	37413413	37413271	ID=MsG0280008733.01.T01:cds;Parent=MsG0280008733.01.T01
Chr2	CDS	37416563	37416617	37416563	ID=MsG0280008733.01.T01:cds;Parent=MsG0280008733.01.T01
Chr2	CDS	37419214	37419589	37419214	ID=MsG0280008733.01.T01:cds;Parent=MsG0280008733.01.T01

Gene Sequence

>MsG0280008733.01.T01

ATGTATGGGAAATGTGGGTGTGTTAGACATTCTAGGATTGTGTTTGATAGGTTGAGTGATGAGAAGAATCATGTTTCTTGGACTGCGATGCTTGGTGTGTATTGTCAGAATAAGGAGTATCAGAATGTGCTTGATCTTGTTAGGGAGAGGGGGGGTTTGGATTTTTATGCGTTTGGGATTGTTCTTCGTGCATGTTCGGGGTTGGCTGCGGTGAATCATGGGAAGGAGGTTCATTGTATGTATGTGAGGAAAGGTGGCTGGAAAGACGTTATCATTGAGTCTGCATGGTTGATTTGTATGCTAAATGTGTGGGTTCGCACAGATGGAAGAGGGGTTGAGGCGTTGGCGTTGTTTGAAGATATGATTAAGGAAGGGATTATACTGATTCCATCACTTTTGTTGCGATACGATAAATCACTTTGGGCAGCTCTTCTTGGAGCTTGTACTAAGTGTTCCGATTATATAACTGCTGAACGCGTTGCAAAGAAGATGATTGAATTGGAGCCTGACTTCCATTTGAGTTATGTTCTGCTTATAACATCTATAGAGAAGGTTGAGTTAGGACAGCTTGATGATGCAAAGAGCCTCATAGCAGTCCCTCAGCCGCGGTGGACAAGGAAAGGGAAGGAAGGATTAGAATGGCTGCTTCTGGGAATGGGAAGGAAGTACATGAGAAGATACACACTCAAAATTGATATGTCTCGGAGGAAAATGTCTCAAATGCTTGAGGAGAGGAGTGACAGACTTAGATTTTTTGTGGATAACATCCCAATCAGAGTGTTCAAGAATACCACAGATAAAGGAGGCATCTATCCGACACAAGCAATGAAGATTTATGCAACAATATGGTATGGCCCATGGGGCTCTGGTGGAGTTCCAATCAATTGGAATGAAGCACCCTTTGAAGCTCACTATCGAGGATTTGGCATCAATGCTTGCCAATCCCAAAGCCCTAATATCGAACAATGTAATTCCTTTAGGTATTGGTGGAATACTGAAAATTATTGGGAGCTAAACTTTGATCAAAAGCAAGCTTACAATAATGTGCGAAGCAAGTATTTAATATATGATTATTGTGCTAAACAGCCAGAAAATCTTGAGTGTCAAGGTTTACATCTAAACTAA

Protein sequence

>MsG0280008733.01.T01

MYGKCGCVRHSRIVFDRLSDEKNHVSWTAMLGVYCQNKEYQNVLDLVRERGGLDFYAFGIVLRACSGLAAVNHGKEVHCMYVRKGGWKDVIIESAWLICMLNVWVRTDGRGVEALALFEDMIKEGIILIPSLLLRYDKSLWAALLGACTKCSDYITAERVAKKMIELEPDFHLSYVLLITSIEKVELGQLDDAKSLIAVPQPRWTRKGKEGLEWLLLGMGRKYMRRYTLKIDMSRRKMSQMLEERSDRLRFFVDNIPIRVFKNTTDKGGIYPTQAMKIYATIWYGPWGSGGVPINWNEAPFEAHYRGFGINACQSQSPNIEQCNSFRYWWNTENYWELNFDQKQAYNNVRSKYLIYDYCAKQPENLECQGLHLN*