AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000145.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000145.01.T01 MTR_1g022345 89.720 214 13 1 1 214 439 643 1.75e-96 294
MsG0180000145.01.T01 MTR_5g082570 71.689 219 48 2 1 214 439 648 5.49e-69 223
MsG0180000145.01.T01 MTR_3g108380 68.085 47 11 1 115 157 44 90 1.10e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000145.01.T01 AT3G28730 58.525 217 76 6 1 213 439 645 1.97e-40 146

Find 73 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTCTTTGGTTCCTTCT+TGG 0.242213 1:+1997174 None:intergenic
TTACCAAGCCTGGAAAATTT+AGG 0.253732 1:-1998410 None:intergenic
AGAATAAGAGTGGGAGGTTT+AGG 0.278835 1:+1998302 None:intergenic
GTCCTGCCCATGCAGTTCTA+AGG 0.292151 1:-1997945 MsG0180000145.01.T01:intron
TTAGAAGGCAAATCCTTCTT+TGG 0.294241 1:+1997163 None:intergenic
ATTCATTTCTCTGAATATTT+CGG 0.320481 1:+1998057 None:intergenic
CAACCCATGAATATTGATTC+AGG 0.326088 1:-1996634 MsG0180000145.01.T01:CDS
GGGAGAGTACTTGGAGAAAA+TGG 0.340807 1:-1996877 MsG0180000145.01.T01:CDS
TTCTTTGGTTCCTTCTTGGC+AGG 0.345422 1:+1997178 None:intergenic
TAATCCTGGAATTTCATTTA+CGG 0.345587 1:-1996904 MsG0180000145.01.T01:CDS
TCTTGGGCTTTGGCCTCATA+AGG 0.353348 1:+1996706 None:intergenic
GAAGAAACAGAAGAAGAAAA+AGG 0.353379 1:-1997086 MsG0180000145.01.T01:CDS
GATTTCTTCTTAGAAGTAGA+TGG 0.353735 1:+1997139 None:intergenic
AAACCAGACAGTGCCCTCTT+AGG 0.362568 1:+1997052 None:intergenic
AATGAATACCACAATTTGTA+TGG 0.365076 1:-1998041 MsG0180000145.01.T01:five_prime_UTR
ATTTCCTGAATCAATATTCA+TGG 0.371026 1:+1996630 None:intergenic
GGTTCTCCTACTGATGATTC+TGG 0.376502 1:-1997339 MsG0180000145.01.T01:CDS
TTAGAAGTAGATGGCTTAGA+AGG 0.377121 1:+1997148 None:intergenic
AGTGCCCTCTTAGGTGCATT+TGG 0.384070 1:+1997061 None:intergenic
TACGGACGTGGGAGAGTACT+TGG 0.413912 1:-1996886 MsG0180000145.01.T01:CDS
GGCCACACCAACAGTTGGTT+GGG 0.430545 1:+1997896 None:intergenic
TTTGTTCTCGACAAGGATGA+TGG 0.451598 1:-1997363 MsG0180000145.01.T01:CDS
AATCTAAAGAAAACTAATCC+TGG 0.464926 1:-1996918 MsG0180000145.01.T01:CDS
TGGAATTTCATTTACGGACG+TGG 0.483650 1:-1996898 MsG0180000145.01.T01:CDS
GAATCAATATTCATGGGTTG+AGG 0.486272 1:+1996637 None:intergenic
TGGCCACACCAACAGTTGGT+TGG 0.488815 1:+1997895 None:intergenic
GCGGAGGAAGGAACCTTATG+AGG 0.489378 1:-1996719 MsG0180000145.01.T01:CDS
CAGATTTGAGTCTGATAAGA+AGG 0.497842 1:+1998096 None:intergenic
CACTCTTATTCTTCATGAAG+AGG 0.498347 1:-1998291 MsG0180000145.01.T01:intron
GCACCTAAGAGGGCACTGTC+TGG 0.501489 1:-1997055 MsG0180000145.01.T01:CDS
AGGATCCAAATGCACCTAAG+AGG 0.505192 1:-1997066 MsG0180000145.01.T01:CDS
CTTCCAGAAACCTGCCAAGA+AGG 0.506566 1:-1997188 MsG0180000145.01.T01:intron
TGCCAAGAAGGAACCAAAGA+AGG 0.508120 1:-1997176 MsG0180000145.01.T01:CDS
TTTCTGATGCGCTCGAGATG+TGG 0.509278 1:+1997837 None:intergenic
CCTCTGTCTCACCACCACTT+TGG 0.510686 1:+1997295 None:intergenic
TCATCTTTGAAAGCTGAAGA+TGG 0.512966 1:-1998360 MsG0180000145.01.T01:five_prime_UTR
ACGTCCGTAAATGAAATTCC+AGG 0.513793 1:+1996900 None:intergenic
TTTCCTGAATCAATATTCAT+GGG 0.520202 1:+1996631 None:intergenic
TTCCTACTAGATTGACTATG+TGG 0.523757 1:-1998165 MsG0180000145.01.T01:intron
ACCAACTGTTGGTGTGGCCA+AGG 0.529642 1:-1997892 MsG0180000145.01.T01:CDS
AATGAATCTGACAGTGCCTA+AGG 0.531097 1:-1996610 None:intergenic
TGATAAAACCATACAAATTG+TGG 0.532500 1:+1998033 None:intergenic
GAATTTGAGCGACATGCTGC+TGG 0.545421 1:-1998143 MsG0180000145.01.T01:five_prime_UTR
AAATTTAGGAGTTGTCAAGA+TGG 0.550659 1:-1998396 MsG0180000145.01.T01:five_prime_UTR
GGATCCAAATGCACCTAAGA+GGG 0.559964 1:-1997065 MsG0180000145.01.T01:CDS
AGAAAGAAGAAGCTTCTCAA+GGG 0.562114 1:+1998326 None:intergenic
ACCTTGGCCACACCAACAGT+TGG 0.570641 1:+1997891 None:intergenic
GAGCGCATCAGAAATGAAGC+TGG 0.571748 1:-1997828 MsG0180000145.01.T01:CDS
ATCATCATTCTCAAGCACCT+TGG 0.580790 1:+1997875 None:intergenic
CAGAAAGAAGAAGCTTCTCA+AGG 0.583849 1:+1998325 None:intergenic
CTCTTCATGAAGAATAAGAG+TGG 0.590015 1:+1998292 None:intergenic
GTTCAATACACAGCGGAGGA+AGG 0.602589 1:-1996731 MsG0180000145.01.T01:CDS
CGCATCAGAAATGAAGCTGG+TGG 0.603857 1:-1997825 MsG0180000145.01.T01:CDS
GGAATTTCATTTACGGACGT+GGG 0.610219 1:-1996897 MsG0180000145.01.T01:CDS
TCAAAAGATGCTGATGACGA+AGG 0.621100 1:-1997118 MsG0180000145.01.T01:CDS
TCATGAAGAATAAGAGTGGG+AGG 0.627094 1:+1998296 None:intergenic
TTTGAGCGACATGCTGCTGG+TGG 0.628138 1:-1998140 MsG0180000145.01.T01:five_prime_UTR
GACTCTGATGCTAGCCAAAG+TGG 0.628895 1:-1997309 MsG0180000145.01.T01:CDS
TGCCCAACCAACTGTTGGTG+TGG 0.630617 1:-1997898 MsG0180000145.01.T01:CDS
GTTCTCGACAAGGATGATGG+AGG 0.634483 1:-1997360 MsG0180000145.01.T01:CDS
CCAAAGTGGTGGTGAGACAG+AGG 0.637450 1:-1997295 MsG0180000145.01.T01:intron
TCTTCATGAAGAATAAGAGT+GGG 0.642579 1:+1998293 None:intergenic
GCGCTCGAGATGTGGATCGA+CGG 0.648144 1:+1997845 None:intergenic
GCTGATGCCCAACCAACTGT+TGG 0.651825 1:-1997903 MsG0180000145.01.T01:CDS
GAAAGAAGAAGCTTCTCAAG+GGG 0.652302 1:+1998327 None:intergenic
GCATGTTCAATACACAGCGG+AGG 0.654139 1:-1996735 MsG0180000145.01.T01:CDS
AAAGATGCTGATGACGAAGG+AGG 0.658535 1:-1997115 MsG0180000145.01.T01:CDS
TCTGCACCAGAATCATCAGT+AGG 0.661015 1:+1997333 None:intergenic
CGTTACAAGGATGAGATGAG+TGG 0.662650 1:-1996673 MsG0180000145.01.T01:CDS
TGGTGGAGATGAAAGTGACG+AGG 0.704697 1:-1997808 MsG0180000145.01.T01:CDS
TCTGATGCTAGCCAAAGTGG+TGG 0.752107 1:-1997306 MsG0180000145.01.T01:CDS
TGGAGATGAAAGTGACGAGG+AGG 0.754949 1:-1997805 MsG0180000145.01.T01:intron
TTTGCATGTTCAATACACAG+CGG 0.764453 1:-1996738 MsG0180000145.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTAGAGTTTTTTTTA+TGG - Chr1:1996817-1996836 MsG0180000145.01.T01:intron 10.0%
!! AATATAATAGGCTAAAATTA+TGG + Chr1:1998227-1998246 None:intergenic 15.0%
!!! TGCTTTTGTATATATTAAAT+TGG - Chr1:1997603-1997622 MsG0180000145.01.T01:intron 15.0%
!! ACAAATATGTGTGATAAATT+TGG + Chr1:1997025-1997044 None:intergenic 20.0%
!! ATTCATTTCTCTGAATATTT+CGG + Chr1:1996960-1996979 None:intergenic 20.0%
!! CACAAACACAAAAATATAAT+AGG + Chr1:1998239-1998258 None:intergenic 20.0%
! AATCTAAAGAAAACTAATCC+TGG - Chr1:1998096-1998115 MsG0180000145.01.T01:five_prime_UTR 25.0%
! AATGAATACCACAATTTGTA+TGG - Chr1:1996973-1996992 MsG0180000145.01.T01:intron 25.0%
! ATTTCCTGAATCAATATTCA+TGG + Chr1:1998387-1998406 None:intergenic 25.0%
! TAATCCTGGAATTTCATTTA+CGG - Chr1:1998110-1998129 MsG0180000145.01.T01:five_prime_UTR 25.0%
! TAGATATATTCAAATGAGGT+TGG + Chr1:1997352-1997371 None:intergenic 25.0%
! TGATAAAACCATACAAATTG+TGG + Chr1:1996984-1997003 None:intergenic 25.0%
! TGCTTAGATATATTCAAATG+AGG + Chr1:1997356-1997375 None:intergenic 25.0%
! TGTTCTAATTTAAGTGATTG+AGG - Chr1:1997307-1997326 MsG0180000145.01.T01:CDS 25.0%
! TTTCCTGAATCAATATTCAT+GGG + Chr1:1998386-1998405 None:intergenic 25.0%
!! AAATACCAAATGTTAGTTTC+TGG - Chr1:1996775-1996794 MsG0180000145.01.T01:intron 25.0%
!! GAAACTAACATTTGGTATTT+TGG + Chr1:1996775-1996794 None:intergenic 25.0%
AAATTTAGGAGTTGTCAAGA+TGG - Chr1:1996618-1996637 MsG0180000145.01.T01:CDS 30.0%
AATTGGTGTAAAATGTCTAC+AGG - Chr1:1997620-1997639 MsG0180000145.01.T01:intron 30.0%
ACCAAAGATTTAAAGAGTAG+AGG + Chr1:1997780-1997799 None:intergenic 30.0%
ACCTCTACTCTTTAAATCTT+TGG - Chr1:1997776-1997795 MsG0180000145.01.T01:intron 30.0%
AGAAAATGGAAAAATCTGTC+GGG - Chr1:1998151-1998170 MsG0180000145.01.T01:five_prime_UTR 30.0%
AGTCTACTTACATTTCAGTT+TGG - Chr1:1997406-1997425 MsG0180000145.01.T01:intron 30.0%
ATAGTCAATCTAGTAGGAAA+TGG + Chr1:1996848-1996867 None:intergenic 30.0%
ATCAACCAGAAACTAACATT+TGG + Chr1:1996783-1996802 None:intergenic 30.0%
ATGCAAAGAAACAGAAAACT+TGG + Chr1:1998263-1998282 None:intergenic 30.0%
ATGGAACTGCAATGAAATAA+TGG + Chr1:1998188-1998207 None:intergenic 30.0%
GAAGAAACAGAAGAAGAAAA+AGG - Chr1:1997928-1997947 MsG0180000145.01.T01:exon 30.0%
GAGAAAATGGAAAAATCTGT+CGG - Chr1:1998150-1998169 MsG0180000145.01.T01:five_prime_UTR 30.0%
GATTTCTTCTTAGAAGTAGA+TGG + Chr1:1997878-1997897 None:intergenic 30.0%
TCTTCATGAAGAATAAGAGT+GGG + Chr1:1996724-1996743 None:intergenic 30.0%
! CTTTATTCATGAGTAGCTTT+TGG - Chr1:1997276-1997295 MsG0180000145.01.T01:intron 30.0%
! TTTCATGTTCTTTTCTCAGA+TGG - Chr1:1997982-1998001 MsG0180000145.01.T01:intron 30.0%
!! AGAAGATAAAAAGCGTTACA+AGG - Chr1:1998328-1998347 MsG0180000145.01.T01:five_prime_UTR 30.0%
!! GTAACGCTTTTTATCTTCTT+GGG + Chr1:1998327-1998346 None:intergenic 30.0%
!! TGTAACGCTTTTTATCTTCT+TGG + Chr1:1998328-1998347 None:intergenic 30.0%
AGAAAGAAGAAGCTTCTCAA+GGG + Chr1:1996691-1996710 None:intergenic 35.0%
AGATTTAAAGAGTAGAGGTG+AGG + Chr1:1997775-1997794 None:intergenic 35.0%
CAAGTAGTCAAGTACAGATT+AGG + Chr1:1997237-1997256 None:intergenic 35.0%
CACTCTTATTCTTCATGAAG+AGG - Chr1:1996723-1996742 MsG0180000145.01.T01:CDS 35.0%
CAGATTTGAGTCTGATAAGA+AGG + Chr1:1996921-1996940 None:intergenic 35.0%
CTCTTCATGAAGAATAAGAG+TGG + Chr1:1996725-1996744 None:intergenic 35.0%
GCTACTCATGAATAAAGAAG+AGG + Chr1:1997273-1997292 None:intergenic 35.0%
TTAGAAGGCAAATCCTTCTT+TGG + Chr1:1997854-1997873 None:intergenic 35.0%
TTAGAAGTAGATGGCTTAGA+AGG + Chr1:1997869-1997888 None:intergenic 35.0%
TTCCACATAGTCAATCTAGT+AGG + Chr1:1996854-1996873 None:intergenic 35.0%
TTCCTACTAGATTGACTATG+TGG - Chr1:1996849-1996868 MsG0180000145.01.T01:intron 35.0%
TTTGCATGTTCAATACACAG+CGG - Chr1:1998276-1998295 MsG0180000145.01.T01:intron 35.0%
! CTTTTTATCTTCTTGGGCTT+TGG + Chr1:1998321-1998340 None:intergenic 35.0%
! GAATCAATATTCATGGGTTG+AGG + Chr1:1998380-1998399 None:intergenic 35.0%
! TCATCTTTGAAAGCTGAAGA+TGG - Chr1:1996654-1996673 MsG0180000145.01.T01:CDS 35.0%
! TGACAACTCCTAAATTTTCC+AGG + Chr1:1996615-1996634 None:intergenic 35.0%
! TGGTCATCATTAAGGTGTTA+GGG + Chr1:1997805-1997824 None:intergenic 35.0%
! TTCAGATTTTGTTCTCGACA+AGG - Chr1:1997644-1997663 MsG0180000145.01.T01:intron 35.0%
! TTGGTCATCATTAAGGTGTT+AGG + Chr1:1997806-1997825 None:intergenic 35.0%
!! CAACCCATGAATATTGATTC+AGG - Chr1:1998380-1998399 MsG0180000145.01.T01:five_prime_UTR 35.0%
AAAGGGATAGATGGACAAAC+AGG + Chr1:1997477-1997496 None:intergenic 40.0%
ACGTCCGTAAATGAAATTCC+AGG + Chr1:1998117-1998136 None:intergenic 40.0%
AGAATAAGAGTGGGAGGTTT+AGG + Chr1:1996715-1996734 None:intergenic 40.0%
ATCATCATTCTCAAGCACCT+TGG + Chr1:1997142-1997161 None:intergenic 40.0%
CAGAAAGAAGAAGCTTCTCA+AGG + Chr1:1996692-1996711 None:intergenic 40.0%
GAAAGAAGAAGCTTCTCAAG+GGG + Chr1:1996690-1996709 None:intergenic 40.0%
GACAAACTGAAAGGGATAGA+TGG + Chr1:1997486-1997505 None:intergenic 40.0%
GGAATTTCATTTACGGACGT+GGG - Chr1:1998117-1998136 MsG0180000145.01.T01:five_prime_UTR 40.0%
GTCATATGCGTATGTCTTGT+GGG - Chr1:1997543-1997562 MsG0180000145.01.T01:intron 40.0%
TCATGAAGAATAAGAGTGGG+AGG + Chr1:1996721-1996740 None:intergenic 40.0%
TCTCTGTATTGCTTACTGTG+TGG - Chr1:1997510-1997529 MsG0180000145.01.T01:intron 40.0%
TGGAATTTCATTTACGGACG+TGG - Chr1:1998116-1998135 MsG0180000145.01.T01:five_prime_UTR 40.0%
TGGTCACAAATGACACTAGA+TGG + Chr1:1998207-1998226 None:intergenic 40.0%
TGGTTATCAGCAAAAGCAAC+TGG + Chr1:1996755-1996774 None:intergenic 40.0%
TGTCATATGCGTATGTCTTG+TGG - Chr1:1997542-1997561 MsG0180000145.01.T01:intron 40.0%
TTCAAGCCTTAGAACTGCAT+GGG + Chr1:1997078-1997097 None:intergenic 40.0%
TTTCAAGCCTTAGAACTGCA+TGG + Chr1:1997079-1997098 None:intergenic 40.0%
TTTGTTCTCGACAAGGATGA+TGG - Chr1:1997651-1997670 MsG0180000145.01.T01:intron 40.0%
! AGAGAGCATGACAAACTGAA+AGG + Chr1:1997495-1997514 None:intergenic 40.0%
! ATCCTTCTTTGGTTCCTTCT+TGG + Chr1:1997843-1997862 None:intergenic 40.0%
! CTGGAAGTTGGTCATCATTA+AGG + Chr1:1997813-1997832 None:intergenic 40.0%
! CTTTTCTCAGATGGAAAGAG+AGG - Chr1:1997991-1998010 MsG0180000145.01.T01:intron 40.0%
! GAGAGCATGACAAACTGAAA+GGG + Chr1:1997494-1997513 None:intergenic 40.0%
! TCAAAAGATGCTGATGACGA+AGG - Chr1:1997896-1997915 MsG0180000145.01.T01:CDS 40.0%
AGGATCCAAATGCACCTAAG+AGG - Chr1:1997948-1997967 MsG0180000145.01.T01:intron 45.0%
ATATGCGTATGTCTTGTGGG+AGG - Chr1:1997546-1997565 MsG0180000145.01.T01:intron 45.0%
CGTTACAAGGATGAGATGAG+TGG - Chr1:1998341-1998360 MsG0180000145.01.T01:five_prime_UTR 45.0%
GAAAAATCTGTCGGGTATGC+TGG - Chr1:1998159-1998178 MsG0180000145.01.T01:intron 45.0%
GGATCCAAATGCACCTAAGA+GGG - Chr1:1997949-1997968 MsG0180000145.01.T01:intron 45.0%
GGTTCTCCTACTGATGATTC+TGG - Chr1:1997675-1997694 MsG0180000145.01.T01:intron 45.0%
TCTGCACCAGAATCATCAGT+AGG + Chr1:1997684-1997703 None:intergenic 45.0%
TGCCAAGAAGGAACCAAAGA+AGG - Chr1:1997838-1997857 MsG0180000145.01.T01:CDS 45.0%
! AAAGATGCTGATGACGAAGG+AGG - Chr1:1997899-1997918 MsG0180000145.01.T01:CDS 45.0%
! TTCTTTGGTTCCTTCTTGGC+AGG + Chr1:1997839-1997858 None:intergenic 45.0%
!! GGGAGAGTACTTGGAGAAAA+TGG - Chr1:1998137-1998156 MsG0180000145.01.T01:five_prime_UTR 45.0%
AAACCAGACAGTGCCCTCTT+AGG + Chr1:1997965-1997984 None:intergenic 50.0%
AGTGCCCTCTTAGGTGCATT+TGG + Chr1:1997956-1997975 None:intergenic 50.0%
CGCATCAGAAATGAAGCTGG+TGG - Chr1:1997189-1997208 MsG0180000145.01.T01:intron 50.0%
CTTCCAGAAACCTGCCAAGA+AGG - Chr1:1997826-1997845 MsG0180000145.01.T01:CDS 50.0%
GAATTTGAGCGACATGCTGC+TGG - Chr1:1996871-1996890 MsG0180000145.01.T01:CDS 50.0%
GACTCTGATGCTAGCCAAAG+TGG - Chr1:1997705-1997724 MsG0180000145.01.T01:intron 50.0%
GAGCGCATCAGAAATGAAGC+TGG - Chr1:1997186-1997205 MsG0180000145.01.T01:intron 50.0%
GCATGTTCAATACACAGCGG+AGG - Chr1:1998279-1998298 MsG0180000145.01.T01:intron 50.0%
GTTCAATACACAGCGGAGGA+AGG - Chr1:1998283-1998302 MsG0180000145.01.T01:intron 50.0%
GTTCCTTCTTGGCAGGTTTC+TGG + Chr1:1997832-1997851 None:intergenic 50.0%
TCTGATGCTAGCCAAAGTGG+TGG - Chr1:1997708-1997727 MsG0180000145.01.T01:intron 50.0%
TGGAGATGAAAGTGACGAGG+AGG - Chr1:1997209-1997228 MsG0180000145.01.T01:intron 50.0%
TGGTGGAGATGAAAGTGACG+AGG - Chr1:1997206-1997225 MsG0180000145.01.T01:intron 50.0%
TTTCTGATGCGCTCGAGATG+TGG + Chr1:1997180-1997199 None:intergenic 50.0%
! CTTGGCAGGTTTCTGGAAGT+TGG + Chr1:1997825-1997844 None:intergenic 50.0%
! GTTCTCGACAAGGATGATGG+AGG - Chr1:1997654-1997673 MsG0180000145.01.T01:intron 50.0%
! TCTTGGGCTTTGGCCTCATA+AGG + Chr1:1998311-1998330 None:intergenic 50.0%
ACCAACTGTTGGTGTGGCCA+AGG - Chr1:1997122-1997141 MsG0180000145.01.T01:CDS 55.0%
ACCTTGGCCACACCAACAGT+TGG + Chr1:1997126-1997145 None:intergenic 55.0%
AGCCTTAGAACTGCATGGGC+AGG + Chr1:1997074-1997093 None:intergenic 55.0%
CCTCTGTCTCACCACCACTT+TGG + Chr1:1997722-1997741 None:intergenic 55.0%
GCGGAGGAAGGAACCTTATG+AGG - Chr1:1998295-1998314 MsG0180000145.01.T01:five_prime_UTR 55.0%
GCTGATGCCCAACCAACTGT+TGG - Chr1:1997111-1997130 MsG0180000145.01.T01:CDS 55.0%
GGCCACACCAACAGTTGGTT+GGG + Chr1:1997121-1997140 None:intergenic 55.0%
GTCCTGCCCATGCAGTTCTA+AGG - Chr1:1997069-1997088 MsG0180000145.01.T01:CDS 55.0%
TGCCCAACCAACTGTTGGTG+TGG - Chr1:1997116-1997135 MsG0180000145.01.T01:CDS 55.0%
TGGCCACACCAACAGTTGGT+TGG + Chr1:1997122-1997141 None:intergenic 55.0%
TTTGAGCGACATGCTGCTGG+TGG - Chr1:1996874-1996893 MsG0180000145.01.T01:CDS 55.0%
! CCAAAGTGGTGGTGAGACAG+AGG - Chr1:1997719-1997738 MsG0180000145.01.T01:intron 55.0%
!! TACGGACGTGGGAGAGTACT+TGG - Chr1:1998128-1998147 MsG0180000145.01.T01:five_prime_UTR 55.0%
GCGCTCGAGATGTGGATCGA+CGG + Chr1:1997172-1997191 None:intergenic 60.0%
GTCTTGTGGGAGGCTGCATG+TGG - Chr1:1997556-1997575 MsG0180000145.01.T01:intron 60.0%
!! GCACCTAAGAGGGCACTGTC+TGG - Chr1:1997959-1997978 MsG0180000145.01.T01:intron 60.0%
TGTGGGAGGCTGCATGTGGC+AGG - Chr1:1997560-1997579 MsG0180000145.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 1996612 1998424 1996612 ID=MsG0180000145.01;Name=MsG0180000145.01
Chr1 mRNA 1996612 1998424 1996612 ID=MsG0180000145.01.T01;Parent=MsG0180000145.01;Name=MsG0180000145.01.T01;_AED=0.46;_eAED=0.48;_QI=297|0.83|0.85|1|0.66|0.57|7|0|214
Chr1 exon 1998292 1998424 1998292 ID=MsG0180000145.01.T01:exon:6876;Parent=MsG0180000145.01.T01
Chr1 exon 1998032 1998177 1998032 ID=MsG0180000145.01.T01:exon:6877;Parent=MsG0180000145.01.T01
Chr1 exon 1997806 1997952 1997806 ID=MsG0180000145.01.T01:exon:6878;Parent=MsG0180000145.01.T01
Chr1 exon 1997296 1997394 1997296 ID=MsG0180000145.01.T01:exon:6879;Parent=MsG0180000145.01.T01
Chr1 exon 1997024 1997203 1997024 ID=MsG0180000145.01.T01:exon:6880;Parent=MsG0180000145.01.T01
Chr1 exon 1996864 1996940 1996864 ID=MsG0180000145.01.T01:exon:6881;Parent=MsG0180000145.01.T01
Chr1 exon 1996612 1996771 1996612 ID=MsG0180000145.01.T01:exon:6882;Parent=MsG0180000145.01.T01
Chr1 five_prime_UTR 1998292 1998424 1998292 ID=MsG0180000145.01.T01:five_prime_utr;Parent=MsG0180000145.01.T01
Chr1 five_prime_UTR 1998032 1998177 1998032 ID=MsG0180000145.01.T01:five_prime_utr;Parent=MsG0180000145.01.T01
Chr1 five_prime_UTR 1997935 1997952 1997935 ID=MsG0180000145.01.T01:five_prime_utr;Parent=MsG0180000145.01.T01
Chr1 CDS 1997806 1997934 1997806 ID=MsG0180000145.01.T01:cds;Parent=MsG0180000145.01.T01
Chr1 CDS 1997296 1997394 1997296 ID=MsG0180000145.01.T01:cds;Parent=MsG0180000145.01.T01
Chr1 CDS 1997024 1997203 1997024 ID=MsG0180000145.01.T01:cds;Parent=MsG0180000145.01.T01
Chr1 CDS 1996864 1996940 1996864 ID=MsG0180000145.01.T01:cds;Parent=MsG0180000145.01.T01
Chr1 CDS 1996612 1996771 1996612 ID=MsG0180000145.01.T01:cds;Parent=MsG0180000145.01.T01
Gene Sequence

>MsG0180000145.01.T01

ATGAATTTAGCTGATGCCCAACCAACTGTTGGTGTGGCCAAGGTGCTTGAGAATGATGATGATGATGCCGTCGATCCACATCTCGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTCTCGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGACTCTGATGCTAGCCAAAGTGGTGGTGAGACAGAGAAACCTGCCAAGAAGGAACCAAAGAAGGATTTGCCTTCTAAGCCATCTACTTCTAAGAAGAAATCAAAAGATGCTGATGACGAAGGAGGAGTGAAGAAGAAACAGAAGAAGAAAAAGGATCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAGATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACGTGGGAGAGTACTTGGAGAAAATGGAAAAATCTGTCGGTTTTCTGTTTCTTTGCATGTTCAATACACAGCGGAGGAAGGAACCTTATGAGGCCAAAGCCCAAGAAGATAAAAAGCGTTACAAGGATGAGATGAGTGGTTACAACAAGAATCCTCAACCCATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA

Protein sequence

>MsG0180000145.01.T01

MNLADAQPTVGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVLDKDDGGSPTDDSGADDSDASQSGGETEKPAKKEPKKDLPSKPSTSKKKSKDADDEGGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGEYLEKMEKSVGFLFLCMFNTQRRKEPYEAKAQEDKKRYKDEMSGYNKNPQPMNIDSGNESDSA*