AlfalfaGEDB | MsG0080048462.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048462.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468
PFAM: PF00069

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048462.01.T01	GAU31871.1	95.783	166	7	0	1	166	399	564	4.54E-110	334

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048462.01.T01	Q9SAH3	77.778	162	31	4	1	160	533	691	1.06E-81	257

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048462.01.T01	A0A2Z6MJP9	95.783	166	7	0	1	166	399	564	2.17e-110	334

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0080048462.01	0.805516	1.285486e-49	6.814334e-47
MsG0080047869.01	MsG0080048462.01	0.840973	6.296448e-58	9.118738e-55
MsG0080047944.01	MsG0080048462.01	0.841885	3.622952e-58	5.398166e-55
MsG0080047957.01	MsG0080048462.01	0.829933	3.901537e-55	4.051111e-52
MsG0080047959.01	MsG0080048462.01	0.829121	6.145892e-55	6.231817e-52
MsG0080047962.01	MsG0080048462.01	0.803284	3.751973e-49	1.877929e-46
MsG0080048461.01	MsG0080048462.01	0.919199	6.062463e-87	1.922936e-82
MsG0080048462.01	MsG0080048463.01	0.812964	3.252649e-51	2.096871e-48
MsG0080048462.01	MsG0080048464.01	0.802621	5.143162e-49	2.531143e-46
MsG0080048462.01	MsG0080048618.01	0.801785	7.644486e-49	3.682855e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048462.01.T01	MTR_2g105260	97.590	166	4	0	1	166	561	726	7.72e-114	339
MsG0080048462.01.T01	MTR_8g035560	58.170	153	59	3	11	162	537	685	2.46e-50	171
MsG0080048462.01.T01	MTR_0007s0390	52.147	163	72	4	3	163	528	686	6.52e-46	159
MsG0080048462.01.T01	MTR_1g102360	51.250	160	59	6	3	148	390	544	1.94e-34	126
MsG0080048462.01.T01	MTR_2g073540	41.600	125	67	3	14	138	585	703	2.60e-23	95.9
MsG0080048462.01.T01	MTR_2g073520	41.600	125	67	3	14	138	691	809	2.81e-23	95.9
MsG0080048462.01.T01	MTR_2g073630	43.443	122	63	3	14	135	787	902	1.42e-22	94.0
MsG0080048462.01.T01	MTR_8g059615	39.231	130	73	4	15	144	803	926	2.52e-22	93.2
MsG0080048462.01.T01	MTR_8g059605	34.641	153	94	4	14	166	624	770	1.03e-21	91.3
MsG0080048462.01.T01	MTR_8g059605	34.641	153	94	4	14	166	819	965	1.20e-21	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048462.01.T01	AT1G80870	77.778	162	31	4	1	160	533	691	1.08e-82	257
MsG0080048462.01.T01	AT2G45590	57.516	153	60	3	11	162	535	683	1.18e-47	164
MsG0080048462.01.T01	AT4G25390	50.658	152	66	4	11	159	506	651	4.77e-43	151
MsG0080048462.01.T01	AT5G51770	54.194	155	62	5	11	161	503	652	2.46e-40	144
MsG0080048462.01.T01	AT1G29720	39.844	128	71	3	14	141	830	951	1.74e-21	90.9
MsG0080048462.01.T01	AT1G07650	38.281	128	73	3	14	141	625	746	5.02e-20	86.7
MsG0080048462.01.T01	AT1G07650	38.281	128	73	3	14	141	812	933	5.97e-20	86.3
MsG0080048462.01.T01	AT1G07650	38.281	128	73	3	14	141	838	959	6.72e-20	86.3
MsG0080048462.01.T01	AT1G07650	38.281	128	73	3	14	141	844	965	6.79e-20	86.3
MsG0080048462.01.T01	AT1G53420	39.200	125	64	4	14	135	783	898	1.50e-18	82.4

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Find 36 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGATATATACAGTTT+AGG	0.391308	contig326end:+26458	MsG0080048462.01.T01:CDS
AATAAGCTGGTGTAGACACT+TGG	0.543697	contig326end:+26562	MsG0080048462.01.T01:CDS
AATCCACACCCTCCATATTC+TGG	0.347982	contig326end:-26425	None:intergenic
ACAAAAGGGCAATGCAGAAT+AGG	0.451033	contig326end:+26829	MsG0080048462.01.T01:CDS
AGAAAGCTAATTTAATAAGC+TGG	0.474195	contig326end:+26549	MsG0080048462.01.T01:CDS
AGACACTTGGCTCAGGCTGG+TGG	0.612331	contig326end:+26575	MsG0080048462.01.T01:CDS
AGATCAAGGAGAAAACAAAA+GGG	0.583870	contig326end:+26815	MsG0080048462.01.T01:CDS
AGCAGCACAACTAGCATGAG+AGG	0.622335	contig326end:+26383	MsG0080048462.01.T01:CDS
ATGTGGCACCAGAATATGGA+GGG	0.719785	contig326end:+26417	MsG0080048462.01.T01:CDS
ATTGGAAGTGATATGTGGAG+TGG	0.731031	contig326end:+26338	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATCAAGGAGAAAACAAAA+GGG	+	contig326end:26815-26834	MsG0080048462.01.T01:CDS	30.0%
TTGATTCTTGTAATTGTGTC+AGG	+	contig326end:26485-26504	MsG0080048462.01.T01:CDS	30.0%
CAGATCAAGGAGAAAACAAA+AGG	+	contig326end:26814-26833	MsG0080048462.01.T01:CDS	35.0%
TACAGAAAATTCCTGAGTTG+AGG	+	contig326end:26693-26712	MsG0080048462.01.T01:CDS	35.0%
AATAAGCTGGTGTAGACACT+TGG	+	contig326end:26562-26581	MsG0080048462.01.T01:CDS	40.0%
CCAGATTATACAGCAGATCA+AGG	+	contig326end:26801-26820	MsG0080048462.01.T01:CDS	40.0%
CCTTGATCTGCTGTATAATC+TGG	-	contig326end:26804-26823	None:intergenic	40.0%
GATCTGCTGTATAATCTGGA+AGG	-	contig326end:26800-26819	None:intergenic	40.0%
GGAGATGCAAGAACATGTAA+TGG	-	contig326end:26518-26537	None:intergenic	40.0%
TATAATCTGGAAGGTGGAGA+AGG	-	contig326end:26791-26810	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
contig326end	gene	26350	26850	26350	ID=MsG0080048462.01;Name=MsG0080048462.01
contig326end	mRNA	26350	26850	26350	ID=MsG0080048462.01.T01;Parent=MsG0080048462.01;Name=MsG0080048462.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|166
contig326end	exon	26350	26850	26350	ID=MsG0080048462.01.T01:exon:22709;Parent=MsG0080048462.01.T01
contig326end	CDS	26350	26850	26350	ID=MsG0080048462.01.T01:cds;Parent=MsG0080048462.01.T01

Gene Sequence

>MsG0080048462.01.T01

ATGTGGAGTGGCGATCTTTTCAGCCGCGAACTCAGCAGCACAACTAGCATGAGAGGTACACTGTGTTATGTGGCACCAGAATATGGAGGGTGTGGATTCTTAATGGAGAAAGCTGATATATACAGTTTAGGAGTTTTGATTCTTGTAATTGTGTCAGGTAGAAGACCATTACATGTTCTTGCATCTCCTATGAAGCTAGAGAAAGCTAATTTAATAAGCTGGTGTAGACACTTGGCTCAGGCTGGTGGTAACAACATCTTGGAACTAGTTGATGAGAAATTGAAAGAAGATGATTACAATAAGGAACAAGCAAGCTTGTGTATCAACTTAGCACTCACTTGCTTACAGAAAATTCCTGAGTTGAGGCCAGATATTGGAGATATTGTTAAGATTTTGAAGGGGGAGATGGAGCTTCCACCACTTCCATTTGAGTTCTCACCTTCTCCACCTTCCAGATTATACAGCAGATCAAGGAGAAAACAAAAGGGCAATGCAGAATAG

Protein sequence

>MsG0080048462.01.T01

MWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSLGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGGNNILELVDEKLKEDDYNKEQASLCINLALTCLQKIPELRPDIGDIVKILKGEMELPPLPFEFSPSPPSRLYSRSRRKQKGNAE*