AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009462.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009462.01.T01 MTR_2g063620 96.360 467 16 1 21 487 121 586 0.0 938
MsG0280009462.01.T01 MTR_2g063813 89.149 470 47 1 21 486 168 637 0.0 877
MsG0280009462.01.T01 MTR_6g091960 88.936 470 47 2 21 486 184 652 0.0 870
MsG0280009462.01.T01 MTR_8g447090 80.983 468 89 0 21 488 172 639 0.0 815
MsG0280009462.01.T01 MTR_6g091930 97.211 251 7 0 21 271 121 371 0.0 521
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009462.01.T01 AT1G79350 75.161 467 115 1 21 486 211 677 0.0 751

Find 115 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTTGATGACTTTATTTC+TGG 0.103651 2:-52387966 MsG0280009462.01.T01:CDS
CGTCTTGGCCTTTGGGGAGC+TGG 0.175908 2:-52391249 MsG0280009462.01.T01:CDS
GGGACTTATTTCCCTGATTT+TGG 0.176235 2:-52391228 MsG0280009462.01.T01:CDS
TCCAAATCATTCTTAATCTT+TGG 0.202348 2:+52393340 None:intergenic
TTGGCAAGTCCTGACGTTTC+AGG 0.230133 2:-52387742 MsG0280009462.01.T01:CDS
GCTAGGGCTGGATTCTTTAT+TGG 0.268991 2:-52393151 MsG0280009462.01.T01:CDS
TATGGTTCGTCTTGGCCTTT+GGG 0.271428 2:-52391256 MsG0280009462.01.T01:CDS
GAACAGTCGCTGGGCTAATC+TGG 0.273931 2:-52393102 MsG0280009462.01.T01:CDS
ATATGGTTCGTCTTGGCCTT+TGG 0.288621 2:-52391257 MsG0280009462.01.T01:CDS
ACCTCGCAATATGGCTTATA+TGG 0.288944 2:-52391274 MsG0280009462.01.T01:CDS
ACTGGTGAACCAAGCATTAA+TGG 0.308031 2:-52388163 MsG0280009462.01.T01:CDS
GACAACTATGGCGATCATAT+TGG 0.315085 2:-52388352 MsG0280009462.01.T01:CDS
ATCCTAGCATGCGTATAAAA+AGG 0.320146 2:-52388450 MsG0280009462.01.T01:intron
TCCAAAGATTAAGAATGATT+TGG 0.339595 2:-52393341 MsG0280009462.01.T01:CDS
TGGTGTGGACCCGGGTTTGA+TGG 0.352904 2:-52391771 MsG0280009462.01.T01:CDS
GTTTGATGCCAGGAGAGATT+TGG 0.365633 2:-52392850 MsG0280009462.01.T01:CDS
ACAACTATGGCGATCATATT+GGG 0.367704 2:-52388351 MsG0280009462.01.T01:CDS
GATAAGAAGCCGACGAAAAC+TGG 0.367845 2:-52391467 MsG0280009462.01.T01:CDS
TACAAAGTCTGTTGGAGTTA+AGG 0.368005 2:-52391874 MsG0280009462.01.T01:CDS
CCTAGAAATTCACCAAAATC+AGG 0.368342 2:+52391216 None:intergenic
TGCATCTGAACCTCGCAATA+TGG 0.369367 2:-52391283 MsG0280009462.01.T01:CDS
TAGATACCGGGGAGAAGTTC+AGG 0.376761 2:+52387888 None:intergenic
GTCTTGGCCTTTGGGGAGCT+GGG 0.381785 2:-52391248 MsG0280009462.01.T01:CDS
CAATAAACAACCCGAGCTTC+AGG 0.393569 2:+52391318 None:intergenic
GACATTGGTTTATGCTTGTC+AGG 0.396018 2:-52393284 MsG0280009462.01.T01:intron
GCGACCATCCAAGCTATCTA+TGG 0.403697 2:-52393436 MsG0280009462.01.T01:CDS
TCAAGCAGTACTTGATATAC+AGG 0.404000 2:-52391444 MsG0280009462.01.T01:intron
GTTGTTTATTGCTCAGCTAC+TGG 0.405515 2:-52391306 MsG0280009462.01.T01:CDS
ACCATCATTCTATCATCTAA+TGG 0.407084 2:+52389184 None:intergenic
ATGGGTGCAAGTTGCATTGC+AGG 0.407812 2:-52392822 MsG0280009462.01.T01:intron
TTTGTATCAAGCTTAGTATA+AGG 0.411060 2:+52391891 None:intergenic
TTAATCTTTGGATCATAAGT+AGG 0.412192 2:+52393352 None:intergenic
GATGTCTCTACAATCGGATC+TGG 0.416759 2:+52393403 None:intergenic
GCTGGATTCTTTATTGGAGA+TGG 0.443607 2:-52393145 MsG0280009462.01.T01:CDS
AAATTAACACTAGACAACTA+TGG 0.446067 2:-52388364 MsG0280009462.01.T01:CDS
GAATCCAGCCCTAGCACCAC+TGG 0.449332 2:+52393159 None:intergenic
CTTGTGCAGTGGTGTGGACC+CGG 0.452342 2:-52391780 MsG0280009462.01.T01:CDS
TTACTCAGGTGGATTTCTGT+TGG 0.459758 2:-52392885 MsG0280009462.01.T01:intron
GGTAAAGGTCGAACAGTCGC+TGG 0.461327 2:-52393112 MsG0280009462.01.T01:CDS
CTGGGCTAATCTGGGAGAAC+TGG 0.463969 2:-52393093 MsG0280009462.01.T01:CDS
CAGACTTGAAGTTTGATGCC+AGG 0.469566 2:-52392860 MsG0280009462.01.T01:CDS
AAAGGCTACAGAAGTTTGGT+TGG 0.470763 2:-52388432 MsG0280009462.01.T01:CDS
GTCATAGGTCTGCAGAGTAC+GGG 0.471575 2:-52388126 MsG0280009462.01.T01:CDS
AGGCGGCTGCACTGCAGACA+AGG 0.471752 2:+52393378 None:intergenic
ATTCCCAGTGGTGCTAGGGC+TGG 0.472460 2:-52393163 MsG0280009462.01.T01:CDS
AATCCAGGTGCTCTTGAGAA+AGG 0.473794 2:-52389407 MsG0280009462.01.T01:intron
AGTTCCTACTGCAGTGAGAC+TGG 0.475341 2:-52388181 MsG0280009462.01.T01:CDS
GGCTCAACTACCTGAAGCTC+GGG 0.481543 2:-52391328 MsG0280009462.01.T01:CDS
GAATGATTTGGAACGTTCAA+AGG 0.487335 2:-52393329 MsG0280009462.01.T01:CDS
ACTTGTCTTCCATTAATGCT+TGG 0.489121 2:+52388154 None:intergenic
ATCCAGGTGCTCTTGAGAAA+GGG 0.489127 2:-52389406 MsG0280009462.01.T01:intron
TTCTTTATTGGAGATGGAGC+TGG 0.494171 2:-52393139 MsG0280009462.01.T01:CDS
ATCATATTGGGCAAGCCACC+AGG 0.494863 2:-52388339 MsG0280009462.01.T01:intron
GTGGAGATCCATAGATAGCT+TGG 0.498472 2:+52393428 None:intergenic
ATCACTAGGCGGCTGCAGCT+TGG 0.499907 2:+52387696 None:intergenic
AACACATTCCCAGTGGTGCT+AGG 0.505816 2:-52393168 MsG0280009462.01.T01:CDS
ATGGCTTATATGGTTCGTCT+TGG 0.508337 2:-52391264 MsG0280009462.01.T01:CDS
AGTCATAGGTCTGCAGAGTA+CGG 0.508677 2:-52388127 MsG0280009462.01.T01:CDS
AAGGAAGATGTCTCTACAAT+CGG 0.512380 2:+52393397 None:intergenic
GGGAGAACTGGCACCATGGA+AGG 0.515498 2:-52393081 MsG0280009462.01.T01:CDS
GAAGACAAGTGTGTAGTCAT+AGG 0.516577 2:-52388141 MsG0280009462.01.T01:CDS
CATGTCATCCAAATCTCTCC+TGG 0.518137 2:+52392842 None:intergenic
AACAGTCGCTGGGCTAATCT+GGG 0.519307 2:-52393101 MsG0280009462.01.T01:CDS
ACTGCACAAGCTGTTGCATA+CGG 0.520486 2:+52391793 None:intergenic
ATGTCGCACACTTAGCTACA+AGG 0.520883 2:-52389233 MsG0280009462.01.T01:CDS
CAGGAGAGATTTGGATGACA+TGG 0.523447 2:-52392841 MsG0280009462.01.T01:CDS
AAGCTTGATACAAAGTCTGT+TGG 0.524422 2:-52391882 MsG0280009462.01.T01:CDS
CACCACTGGGAATGTGTTGA+AGG 0.524618 2:+52393173 None:intergenic
CTCTGTCAGATGATGCTATG+AGG 0.527173 2:+52391823 None:intergenic
TAAAGGAGCTTCAAAGGAAG+AGG 0.532965 2:-52387768 MsG0280009462.01.T01:CDS
TCTACAATCGGATCTGGGTG+TGG 0.536615 2:+52393409 None:intergenic
ACACATTCCCAGTGGTGCTA+GGG 0.537313 2:-52393167 MsG0280009462.01.T01:CDS
TATAGAAGATGACGGAGTAA+AGG 0.538474 2:-52387785 MsG0280009462.01.T01:intron
ACCATTAGATGATAGAATGA+TGG 0.541275 2:-52389185 MsG0280009462.01.T01:intron
TTGTGCAGTGGTGTGGACCC+GGG 0.541315 2:-52391779 MsG0280009462.01.T01:CDS
GATGGAGCTGGTGTAGGTAA+AGG 0.543859 2:-52393127 MsG0280009462.01.T01:CDS
TTTGGATCATAAGTAGGCTC+AGG 0.551276 2:+52393358 None:intergenic
ATTGGAGATGGAGCTGGTGT+AGG 0.552085 2:-52393133 MsG0280009462.01.T01:CDS
ATGCTTGCAGATCGAGACAT+TGG 0.557806 2:-52393299 MsG0280009462.01.T01:CDS
TGGTCTTATAATATTTGATG+AGG 0.562682 2:-52391751 MsG0280009462.01.T01:intron
CAAAAGCCTGAACTTCTCCC+CGG 0.562771 2:-52387894 MsG0280009462.01.T01:intron
ATGTCTCTACAATCGGATCT+GGG 0.563315 2:+52393404 None:intergenic
AGGCTCAACTACCTGAAGCT+CGG 0.563884 2:-52391329 MsG0280009462.01.T01:CDS
ACGGAGTAAAGGAGCTTCAA+AGG 0.564169 2:-52387774 MsG0280009462.01.T01:CDS
ATCTGGGAGAACTGGCACCA+TGG 0.566049 2:-52393085 MsG0280009462.01.T01:CDS
AGCTCTAGAACTAGTTGCAA+TGG 0.566723 2:-52389375 MsG0280009462.01.T01:CDS
CTAGAAATTCACCAAAATCA+GGG 0.568579 2:+52391217 None:intergenic
TATTATAAGACCATCAAACC+CGG 0.569946 2:+52391761 None:intergenic
GCTTCAAAGGAAGAGGCACT+TGG 0.572974 2:-52387761 MsG0280009462.01.T01:CDS
TCATCACTTTCAGAATCACT+AGG 0.574231 2:+52387682 None:intergenic
AAAGTCTGTTGGAGTTAAGG+AGG 0.580159 2:-52391871 MsG0280009462.01.T01:CDS
TCCAGGTGCTCTTGAGAAAG+GGG 0.585240 2:-52389405 MsG0280009462.01.T01:intron
ATGGTTCGTCTTGGCCTTTG+GGG 0.585893 2:-52391255 MsG0280009462.01.T01:CDS
CGCTGTATAACAAGAGACAT+TGG 0.587097 2:+52393456 None:intergenic
CTGCACAAGCTGTTGCATAC+GGG 0.592988 2:+52391794 None:intergenic
TTGCAATGGACTTGAAAGCA+AGG 0.604604 2:-52389361 MsG0280009462.01.T01:intron
GTAAAGGTCGAACAGTCGCT+GGG 0.604678 2:-52393111 MsG0280009462.01.T01:CDS
GGATCATAAGTAGGCTCAGG+CGG 0.614806 2:+52393361 None:intergenic
TCATAGGTCTGCAGAGTACG+GGG 0.615144 2:-52388125 MsG0280009462.01.T01:CDS
AATCCAGCCCTAGCACCACT+GGG 0.618049 2:+52393160 None:intergenic
AAGTCTGTTGGAGTTAAGGA+GGG 0.619652 2:-52391870 MsG0280009462.01.T01:CDS
AATAAGTCCCAGCTCCCCAA+AGG 0.624651 2:+52391241 None:intergenic
CAACAGCTTGTGCAGTGGTG+TGG 0.629138 2:-52391786 MsG0280009462.01.T01:CDS
AGATCCATAGATAGCTTGGA+TGG 0.629714 2:+52393432 None:intergenic
ACCATATAAGCCATATTGCG+AGG 0.660543 2:+52391273 None:intergenic
TGTCGCACACTTAGCTACAA+GGG 0.662496 2:-52389232 MsG0280009462.01.T01:CDS
ATTATAAGACCATCAAACCC+GGG 0.663045 2:+52391762 None:intergenic
CCAGGTGCTCTTGAGAAAGG+GGG 0.680102 2:-52389404 MsG0280009462.01.T01:intron
TTCACCAGTCTCACTGCAGT+AGG 0.681763 2:+52388177 None:intergenic
CTCATAGCATCATCTGACAG+AGG 0.696364 2:-52391822 MsG0280009462.01.T01:CDS
AGGAGAGATTTGGATGACAT+GGG 0.700194 2:-52392840 MsG0280009462.01.T01:CDS
CATAGGTCTGCAGAGTACGG+GGG 0.709323 2:-52388124 MsG0280009462.01.T01:CDS
GTATGCAACAGCTTGTGCAG+TGG 0.719708 2:-52391791 MsG0280009462.01.T01:CDS
CACCTTCAACACATTCCCAG+TGG 0.719890 2:-52393175 MsG0280009462.01.T01:CDS
TCACTTTCAGAATCACTAGG+CGG 0.729948 2:+52387685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATTAATATTAATATA+AGG + Chr2:52393279-52393298 None:intergenic 0.0%
!! TTATTTGGATTATTAAATAT+GGG - Chr2:52390565-52390584 MsG0280009462.01.T01:intron 10.0%
!!! AGTATATATTTTTTGAAATA+AGG + Chr2:52390013-52390032 None:intergenic 10.0%
!!! TCATAGTTATTATTTTAAAA+AGG + Chr2:52389958-52389977 None:intergenic 10.0%
!! AAAAAAAAAAACTCTAATCA+AGG + Chr2:52391059-52391078 None:intergenic 15.0%
!! ATACATTGATAGAATTAATA+AGG - Chr2:52388700-52388719 MsG0280009462.01.T01:intron 15.0%
!! ATATGAAAGATATGTTTATA+TGG + Chr2:52391112-52391131 None:intergenic 15.0%
!! ATTTAAAAAGGCTAATAAAA+AGG + Chr2:52389466-52389485 None:intergenic 15.0%
!! GATATAAAAGGATAATTAAT+GGG - Chr2:52390217-52390236 MsG0280009462.01.T01:intron 15.0%
!! GTTATTTGGATTATTAAATA+TGG - Chr2:52390564-52390583 MsG0280009462.01.T01:intron 15.0%
!! TACATTGATAGAATTAATAA+GGG - Chr2:52388701-52388720 MsG0280009462.01.T01:intron 15.0%
!! TACTATAGTAGTTTATATAT+TGG - Chr2:52392239-52392258 MsG0280009462.01.T01:intron 15.0%
!! TGATATAAAAGGATAATTAA+TGG - Chr2:52390216-52390235 MsG0280009462.01.T01:intron 15.0%
!! TTTAAAAAGGCTAATAAAAA+GGG + Chr2:52389465-52389484 None:intergenic 15.0%
!!! CATCAGATAAAATTATTTTT+TGG + Chr2:52389057-52389076 None:intergenic 15.0%
!!! TGGATATATAAATTGTTATT+TGG - Chr2:52390550-52390569 MsG0280009462.01.T01:intron 15.0%
!!! TTATATTTAAAATTTTCTCC+AGG - Chr2:52390316-52390335 MsG0280009462.01.T01:intron 15.0%
!!! TTATTATTTACTGAAGTTTT+TGG - Chr2:52392856-52392875 MsG0280009462.01.T01:CDS 15.0%
!!! TTTTTATTAGCCTTTTTAAA+TGG - Chr2:52389465-52389484 MsG0280009462.01.T01:intron 15.0%
!! AAAAGAAATGGTATTAATCA+CGG - Chr2:52388402-52388421 MsG0280009462.01.T01:CDS 20.0%
!! AACAAAAATCACAGATATTA+AGG - Chr2:52388572-52388591 MsG0280009462.01.T01:intron 20.0%
!! AATGAACTTTAAACAATTAC+AGG + Chr2:52391682-52391701 None:intergenic 20.0%
!! AATGATCTTATAATTAGTGA+CGG - Chr2:52388807-52388826 MsG0280009462.01.T01:intron 20.0%
!! ACAAAAGTTAATCATATCAT+AGG + Chr2:52388352-52388371 None:intergenic 20.0%
!! ACAAGAAAGCAAAAAATAAT+AGG + Chr2:52389013-52389032 None:intergenic 20.0%
!! ACATTGATAGAATTAATAAG+GGG - Chr2:52388702-52388721 MsG0280009462.01.T01:intron 20.0%
!! AGCATTTATAAATTTGTAGA+TGG - Chr2:52388749-52388768 MsG0280009462.01.T01:intron 20.0%
!! ATAAGGTATATAACAAAACA+CGG + Chr2:52393262-52393281 None:intergenic 20.0%
!! ATGAACTTTAAACAATTACA+GGG + Chr2:52391681-52391700 None:intergenic 20.0%
!! ATTATCGATATTTAATCATG+TGG + Chr2:52387871-52387890 None:intergenic 20.0%
!! GATCATTGGAAAATTAAAAT+AGG + Chr2:52388215-52388234 None:intergenic 20.0%
!! TACTGTTAACATAAAAGAAA+TGG - Chr2:52388390-52388409 MsG0280009462.01.T01:CDS 20.0%
!! TATAAAAACCAGAATGAAAA+TGG + Chr2:52390301-52390320 None:intergenic 20.0%
!! TATATATTTCAGATACGTAA+AGG + Chr2:52391829-52391848 None:intergenic 20.0%
!! TTAATTCTATCAATGTATCT+TGG + Chr2:52388698-52388717 None:intergenic 20.0%
!! TTATTTACTACTATTGTGTT+GGG - Chr2:52393122-52393141 MsG0280009462.01.T01:CDS 20.0%
!! TTCTTACATTAAAATTTGAC+AGG - Chr2:52389771-52389790 MsG0280009462.01.T01:intron 20.0%
!! TTTATTTACTACTATTGTGT+TGG - Chr2:52393121-52393140 MsG0280009462.01.T01:CDS 20.0%
!!! AATTTTACTATAGAAGATGA+CGG - Chr2:52393327-52393346 MsG0280009462.01.T01:CDS 20.0%
!!! AATTTTATCTGATGTTTTGT+TGG - Chr2:52389063-52389082 MsG0280009462.01.T01:intron 20.0%
!!! ATAATATTTGATGAGGTATT+AGG - Chr2:52389376-52389395 MsG0280009462.01.T01:CDS 20.0%
!!! ATTTATTTTCCATTTTCAGT+TGG - Chr2:52390248-52390267 MsG0280009462.01.T01:intron 20.0%
!!! GTATATTGTTATTAGGTTAA+TGG - Chr2:52388835-52388854 MsG0280009462.01.T01:intron 20.0%
! AAAAAAAGACCAACTGAAAA+TGG + Chr2:52390260-52390279 None:intergenic 25.0%
! AAATTAACACTAGACAACTA+TGG - Chr2:52392756-52392775 MsG0280009462.01.T01:intron 25.0%
! AATATGGGTAATATATCTGT+TGG - Chr2:52390580-52390599 MsG0280009462.01.T01:intron 25.0%
! AATTGTGACTTAAACTTACA+AGG + Chr2:52388072-52388091 None:intergenic 25.0%
! ACTTGTTTGTAATTTCAACT+TGG - Chr2:52388173-52388192 MsG0280009462.01.T01:CDS 25.0%
! AGAAAGCAAAAAATAATAGG+AGG + Chr2:52389010-52389029 None:intergenic 25.0%
! AGATATTAAGGAAAACATGT+TGG - Chr2:52388584-52388603 MsG0280009462.01.T01:intron 25.0%
! ATATGGGTAATATATCTGTT+GGG - Chr2:52390581-52390600 MsG0280009462.01.T01:intron 25.0%
! ATTTGCTTCGTATTGTTAAA+AGG + Chr2:52391436-52391455 None:intergenic 25.0%
! CTGTTTGTGTTTGATATAAA+AGG - Chr2:52390205-52390224 MsG0280009462.01.T01:intron 25.0%
! GATATTAAGGAAAACATGTT+GGG - Chr2:52388585-52388604 MsG0280009462.01.T01:intron 25.0%
! GGAATGATTTCCATTTAAAA+AGG + Chr2:52389478-52389497 None:intergenic 25.0%
! GTGTCATAAAGCAAAAAATT+TGG - Chr2:52389619-52389638 MsG0280009462.01.T01:intron 25.0%
! GTTAGATAGTCCTATAAAAA+GGG + Chr2:52388555-52388574 None:intergenic 25.0%
! TCCAAAGATTAAGAATGATT+TGG - Chr2:52387779-52387798 MsG0280009462.01.T01:CDS 25.0%
! TCCAAATCATTCTTAATCTT+TGG + Chr2:52387783-52387802 None:intergenic 25.0%
! TGAATATATCTATACGCAAA+GGG + Chr2:52388657-52388676 None:intergenic 25.0%
! TGAGCTATATTTATGAAGAA+CGG + Chr2:52392311-52392330 None:intergenic 25.0%
! TGTTAGATAGTCCTATAAAA+AGG + Chr2:52388556-52388575 None:intergenic 25.0%
! TTAATCTTTGGATCATAAGT+AGG + Chr2:52387771-52387790 None:intergenic 25.0%
! TTATAGTTGATCATGTGATT+TGG - Chr2:52390052-52390071 MsG0280009462.01.T01:intron 25.0%
! TTGAATATATCTATACGCAA+AGG + Chr2:52388658-52388677 None:intergenic 25.0%
! TTGCATAAGGATTAAAAATC+AGG + Chr2:52390137-52390156 None:intergenic 25.0%
! TTTAAACAATTACAGGGTAA+GGG + Chr2:52391675-52391694 None:intergenic 25.0%
! TTTGTATCAAGCTTAGTATA+AGG + Chr2:52389232-52389251 None:intergenic 25.0%
!! AAATAACTCCATTTTCATTC+TGG - Chr2:52390290-52390309 MsG0280009462.01.T01:intron 25.0%
!! ATTAAGTCTAAGTTGTTTCA+TGG - Chr2:52392805-52392824 MsG0280009462.01.T01:intron 25.0%
!! CTTTTATATCAAACACAAAC+AGG + Chr2:52390207-52390226 None:intergenic 25.0%
!! GAATTTGATGACTTTATTTC+TGG - Chr2:52393154-52393173 MsG0280009462.01.T01:CDS 25.0%
!! TATTAGGCTTTTTAAATGGT+GGG - Chr2:52389392-52389411 MsG0280009462.01.T01:CDS 25.0%
!! TTAAGGAAAGAGTTTAAAGT+TGG - Chr2:52388449-52388468 MsG0280009462.01.T01:intron 25.0%
!! TTTCAGTTGTATTTTCTTCA+TGG - Chr2:52390476-52390495 MsG0280009462.01.T01:intron 25.0%
!! TTTTAACAATACGAAGCAAA+TGG - Chr2:52391435-52391454 MsG0280009462.01.T01:intron 25.0%
!!! ACAAGTCTTGTTTGAATAAA+AGG - Chr2:52390648-52390667 MsG0280009462.01.T01:intron 25.0%
!!! AGAATCTCTACAGTTTTAAA+AGG + Chr2:52392894-52392913 None:intergenic 25.0%
!!! CTACAGTTTTAAAAGGAAAA+GGG + Chr2:52392887-52392906 None:intergenic 25.0%
!!! CTTCTACAATTTTGAAAACA+AGG - Chr2:52390360-52390379 MsG0280009462.01.T01:intron 25.0%
!!! CTTGTTTTCAAAATTGTAGA+AGG + Chr2:52390362-52390381 None:intergenic 25.0%
!!! GTAATAGAATTTTGACATCA+TGG - Chr2:52392552-52392571 MsG0280009462.01.T01:intron 25.0%
!!! TCTACAGTTTTAAAAGGAAA+AGG + Chr2:52392888-52392907 None:intergenic 25.0%
!!! TGGTCTTATAATATTTGATG+AGG - Chr2:52389369-52389388 MsG0280009462.01.T01:CDS 25.0%
!!! TGTAGATGGTCTTATATTTA+GGG - Chr2:52388763-52388782 MsG0280009462.01.T01:intron 25.0%
!!! TTGTAGATGGTCTTATATTT+AGG - Chr2:52388762-52388781 MsG0280009462.01.T01:intron 25.0%
AACAACTTAGACTTAATACC+TGG + Chr2:52392802-52392821 None:intergenic 30.0%
AAGATGAAGTGAAAAGTCTT+GGG - Chr2:52388486-52388505 MsG0280009462.01.T01:intron 30.0%
AATACTTGAATCCCTATCAA+AGG + Chr2:52392458-52392477 None:intergenic 30.0%
ACAATTTGTGCATGTAATCA+TGG - Chr2:52388086-52388105 MsG0280009462.01.T01:intron 30.0%
ACCATCATTCTATCATCTAA+TGG + Chr2:52391939-52391958 None:intergenic 30.0%
ACCATTAGATGATAGAATGA+TGG - Chr2:52391935-52391954 MsG0280009462.01.T01:intron 30.0%
ATAAAAAGGCTACAGAAGTT+TGG - Chr2:52392684-52392703 MsG0280009462.01.T01:intron 30.0%
ATATTTATGAAGAACGGAGA+AGG + Chr2:52392305-52392324 None:intergenic 30.0%
ATGTAGCATAACAATTGAAG+TGG + Chr2:52388521-52388540 None:intergenic 30.0%
ATTGTCGTAATTTATATGCC+AGG + Chr2:52390081-52390100 None:intergenic 30.0%
CAATTTGTGCATGTAATCAT+GGG - Chr2:52388087-52388106 MsG0280009462.01.T01:intron 30.0%
CGGAAATATGAATTGACAAT+AGG + Chr2:52389499-52389518 None:intergenic 30.0%
CTAGAAATTCACCAAAATCA+GGG + Chr2:52389906-52389925 None:intergenic 30.0%
CTATTATGACATGAAGTTTC+TGG + Chr2:52392273-52392292 None:intergenic 30.0%
CTTTAAACAATTACAGGGTA+AGG + Chr2:52391676-52391695 None:intergenic 30.0%
GAACTTAAATATTGCATGTG+TGG + Chr2:52391335-52391354 None:intergenic 30.0%
TATATCCATCCAGTTCTTAT+TGG + Chr2:52390538-52390557 None:intergenic 30.0%
TATTATAAGACCATCAAACC+CGG + Chr2:52389362-52389381 None:intergenic 30.0%
TGAAGACTCTTAATTAACCA+AGG + Chr2:52389092-52389111 None:intergenic 30.0%
TTATTATTGAAGTGTGAGTG+TGG - Chr2:52389586-52389605 MsG0280009462.01.T01:intron 30.0%
TTGCTTCACTTCTAATTTCA+GGG - Chr2:52391854-52391873 MsG0280009462.01.T01:CDS 30.0%
TTGTAATTTCAACTTGGAGT+GGG - Chr2:52388179-52388198 MsG0280009462.01.T01:CDS 30.0%
TTTAACAAGTACGAAGCAAA+TGG - Chr2:52391196-52391215 MsG0280009462.01.T01:intron 30.0%
TTTGCTTCACTTCTAATTTC+AGG - Chr2:52391853-52391872 MsG0280009462.01.T01:CDS 30.0%
TTTGTAATTTCAACTTGGAG+TGG - Chr2:52388178-52388197 MsG0280009462.01.T01:CDS 30.0%
! AAAAAATTTGGTTCCCGAAA+AGG - Chr2:52389631-52389650 MsG0280009462.01.T01:intron 30.0%
! ACTCATCTTTTTGTATCAAC+TGG - Chr2:52390179-52390198 MsG0280009462.01.T01:intron 30.0%
! ATGTATTGACCAATAAGAAC+TGG - Chr2:52390526-52390545 MsG0280009462.01.T01:intron 30.0%
! ATTTTCCAATGATCTTACTC+AGG - Chr2:52388221-52388240 MsG0280009462.01.T01:intron 30.0%
! GGAGTGAGTATATTGTTATT+AGG - Chr2:52388828-52388847 MsG0280009462.01.T01:intron 30.0%
! GTATTAGGCTTTTTAAATGG+TGG - Chr2:52389391-52389410 MsG0280009462.01.T01:CDS 30.0%
! TACATCAGTCTTGTGTATTA+AGG - Chr2:52392521-52392540 MsG0280009462.01.T01:intron 30.0%
! TATACTGCTATCGAAGTTTT+GGG + Chr2:52390848-52390867 None:intergenic 30.0%
! TGAGGGATATTGTTATTAAG+TGG - Chr2:52389530-52389549 MsG0280009462.01.T01:intron 30.0%
! TTAAAATTTTCTCCAGGAAG+TGG - Chr2:52390322-52390341 MsG0280009462.01.T01:intron 30.0%
! TTGCTTCGTACTTGTTAAAA+AGG + Chr2:52391195-52391214 None:intergenic 30.0%
!! GAGGTATTAGGCTTTTTAAA+TGG - Chr2:52389388-52389407 MsG0280009462.01.T01:CDS 30.0%
!! TGAAATGAAAGAGCATCTAA+TGG + Chr2:52392049-52392068 None:intergenic 30.0%
AACTTAGACTTAATACCTGG+TGG + Chr2:52392799-52392818 None:intergenic 35.0%
AAGCTTGATACAAAGTCTGT+TGG - Chr2:52389238-52389257 MsG0280009462.01.T01:CDS 35.0%
AAGGAAGATGTCTCTACAAT+CGG + Chr2:52387726-52387745 None:intergenic 35.0%
AATTTCTTCGGGCATATTGA+TGG - Chr2:52391969-52391988 MsG0280009462.01.T01:intron 35.0%
ACAACTATGGCGATCATATT+GGG - Chr2:52392769-52392788 MsG0280009462.01.T01:intron 35.0%
ACTCGCTTACAAACTTAGAA+TGG + Chr2:52390769-52390788 None:intergenic 35.0%
ACTTGTCTTCCATTAATGCT+TGG + Chr2:52392969-52392988 None:intergenic 35.0%
AGTTTATTCAAAGCATGCAC+TGG + Chr2:52389208-52389227 None:intergenic 35.0%
ATATGCCCGAAGAAATTAGT+CGG + Chr2:52391966-52391985 None:intergenic 35.0%
ATCCTAGCATGCGTATAAAA+AGG - Chr2:52392670-52392689 MsG0280009462.01.T01:intron 35.0%
ATTATAAGACCATCAAACCC+GGG + Chr2:52389361-52389380 None:intergenic 35.0%
ATTGACCAATAAGAACTGGA+TGG - Chr2:52390530-52390549 MsG0280009462.01.T01:intron 35.0%
ATTTACAGCACTCCTTAATC+TGG - Chr2:52390729-52390748 MsG0280009462.01.T01:intron 35.0%
CAATACATGCAAAATGCGAT+AGG + Chr2:52390514-52390533 None:intergenic 35.0%
CCTAGAAATTCACCAAAATC+AGG + Chr2:52389907-52389926 None:intergenic 35.0%
CTGATGTAAATACACAAGAC+TGG + Chr2:52392509-52392528 None:intergenic 35.0%
GAAGATGAAGTGAAAAGTCT+TGG - Chr2:52388485-52388504 MsG0280009462.01.T01:intron 35.0%
GATAGTCCTATAAAAAGGGA+CGG + Chr2:52388551-52388570 None:intergenic 35.0%
GGTATTAATCACGGATAGAA+GGG - Chr2:52388411-52388430 MsG0280009462.01.T01:CDS 35.0%
GTATGACCGACTAATTTCTT+CGG - Chr2:52391957-52391976 MsG0280009462.01.T01:intron 35.0%
GTATTAATCACGGATAGAAG+GGG - Chr2:52388412-52388431 MsG0280009462.01.T01:CDS 35.0%
GTGTGTGTCAATCTTCAAAA+AGG + Chr2:52388863-52388882 None:intergenic 35.0%
TACAAAGTCTGTTGGAGTTA+AGG - Chr2:52389246-52389265 MsG0280009462.01.T01:CDS 35.0%
TACTACTATTGTGTTGGGTA+GGG - Chr2:52393127-52393146 MsG0280009462.01.T01:CDS 35.0%
TATCCCTCAAAATTCAACAG+CGG + Chr2:52389519-52389538 None:intergenic 35.0%
TATGACCGACTAATTTCTTC+GGG - Chr2:52391958-52391977 MsG0280009462.01.T01:intron 35.0%
TCAAGCAGTACTTGATATAC+AGG - Chr2:52389676-52389695 MsG0280009462.01.T01:intron 35.0%
TCATCACTTTCAGAATCACT+AGG + Chr2:52393441-52393460 None:intergenic 35.0%
TCTATACGCAAAGGGTAATT+TGG + Chr2:52388649-52388668 None:intergenic 35.0%
TGCTTCACTTCTAATTTCAG+GGG - Chr2:52391855-52391874 MsG0280009462.01.T01:CDS 35.0%
TGCTTCGTATTGTTAAAAGG+AGG + Chr2:52391433-52391452 None:intergenic 35.0%
TGGTATTAATCACGGATAGA+AGG - Chr2:52388410-52388429 MsG0280009462.01.T01:CDS 35.0%
TTACTACTATTGTGTTGGGT+AGG - Chr2:52393126-52393145 MsG0280009462.01.T01:CDS 35.0%
TTCTAAGTTTGTAAGCGAGT+TGG - Chr2:52390769-52390788 MsG0280009462.01.T01:intron 35.0%
! ATACTGCTATCGAAGTTTTG+GGG + Chr2:52390847-52390866 None:intergenic 35.0%
! ATGACATGAAGTTTCTGGAT+TGG + Chr2:52392268-52392287 None:intergenic 35.0%
! ATTTCCGCTGTTGAATTTTG+AGG - Chr2:52389512-52389531 MsG0280009462.01.T01:intron 35.0%
! CTATACTGCTATCGAAGTTT+TGG + Chr2:52390849-52390868 None:intergenic 35.0%
! CTTCGTACTTGTTAAAAAGG+CGG + Chr2:52391192-52391211 None:intergenic 35.0%
! GAATGATTTGGAACGTTCAA+AGG - Chr2:52387791-52387810 MsG0280009462.01.T01:intron 35.0%
! GATTGCTATTCACCAGATTA+AGG + Chr2:52390744-52390763 None:intergenic 35.0%
! GTTGTCGTGTTTGAAGTAAT+TGG + Chr2:52390700-52390719 None:intergenic 35.0%
! TCCAATTGATGATACTGCAA+GGG - Chr2:52388907-52388926 MsG0280009462.01.T01:intron 35.0%
! TTCCAATTGATGATACTGCA+AGG - Chr2:52388906-52388925 MsG0280009462.01.T01:intron 35.0%
! TTTCCGCTGTTGAATTTTGA+GGG - Chr2:52389513-52389532 MsG0280009462.01.T01:intron 35.0%
!! CAATTCTAAAATGAGCCACA+AGG - Chr2:52392404-52392423 MsG0280009462.01.T01:intron 35.0%
!! CCTGATTTTGGTGAATTTCT+AGG - Chr2:52389904-52389923 MsG0280009462.01.T01:intron 35.0%
!! TATAGAAGATGACGGAGTAA+AGG - Chr2:52393335-52393354 MsG0280009462.01.T01:CDS 35.0%
!!! GTGTTTTAGTCTAAAAGCCA+TGG + Chr2:52392385-52392404 None:intergenic 35.0%
AAAAAGATGGACCACACTGA+AGG - Chr2:52391253-52391272 MsG0280009462.01.T01:CDS 40.0%
AAAACACGGCATGTAGATAC+CGG + Chr2:52393248-52393267 None:intergenic 40.0%
AAAGGCTACAGAAGTTTGGT+TGG - Chr2:52392688-52392707 MsG0280009462.01.T01:intron 40.0%
AAAGTCTGTTGGAGTTAAGG+AGG - Chr2:52389249-52389268 MsG0280009462.01.T01:intron 40.0%
AAATTCCATCACCAACCTAG+CGG - Chr2:52392105-52392124 MsG0280009462.01.T01:intron 40.0%
AACCTTCATGCTTGTTTCCA+TGG - Chr2:52387916-52387935 MsG0280009462.01.T01:CDS 40.0%
AAGTCTGTTGGAGTTAAGGA+GGG - Chr2:52389250-52389269 MsG0280009462.01.T01:intron 40.0%
AATTACAGGGTAAGGGTCAA+TGG + Chr2:52391668-52391687 None:intergenic 40.0%
ACACTGAAGGTGGTAAAAAG+GGG - Chr2:52391505-52391524 MsG0280009462.01.T01:intron 40.0%
ACCATATAAGCCATATTGCG+AGG + Chr2:52389850-52389869 None:intergenic 40.0%
ACCTCGCAATATGGCTTATA+TGG - Chr2:52389846-52389865 MsG0280009462.01.T01:intron 40.0%
ACTGGTGAACCAAGCATTAA+TGG - Chr2:52392957-52392976 MsG0280009462.01.T01:intron 40.0%
AGATCCATAGATAGCTTGGA+TGG + Chr2:52387691-52387710 None:intergenic 40.0%
AGGAGAGATTTGGATGACAT+GGG - Chr2:52388280-52388299 MsG0280009462.01.T01:intron 40.0%
AGGTTGTCCATTCATGATAG+CGG - Chr2:52390807-52390826 MsG0280009462.01.T01:intron 40.0%
ATACATTCCGCCACAAACAT+TGG + Chr2:52392174-52392193 None:intergenic 40.0%
ATCCACCTGAGTAAGATCAT+TGG + Chr2:52388229-52388248 None:intergenic 40.0%
ATGGCTTATATGGTTCGTCT+TGG - Chr2:52389856-52389875 MsG0280009462.01.T01:intron 40.0%
ATGTCTCTACAATCGGATCT+GGG + Chr2:52387719-52387738 None:intergenic 40.0%
CACACTGAAGGTGGTAAAAA+AGG - Chr2:52391265-52391284 MsG0280009462.01.T01:CDS 40.0%
CACACTGAAGGTGGTAAAAA+GGG - Chr2:52391265-52391284 MsG0280009462.01.T01:CDS 40.0%
CATTAACGAGTGATGAATCC+AGG - Chr2:52391698-52391717 MsG0280009462.01.T01:intron 40.0%
CGCTGTATAACAAGAGACAT+TGG + Chr2:52387667-52387686 None:intergenic 40.0%
CGCTTACAAACTTAGAATGG+TGG + Chr2:52390766-52390785 None:intergenic 40.0%
CTGCAAAAAGGCCAAAAAGA+TGG - Chr2:52391240-52391259 MsG0280009462.01.T01:CDS 40.0%
CTTCAGTTTACAGACCCAAA+AGG + Chr2:52388328-52388347 None:intergenic 40.0%
GAAGACAAGTGTGTAGTCAT+AGG - Chr2:52392979-52392998 MsG0280009462.01.T01:intron 40.0%
GAATCCCTATCAAAGGCTTA+GGG + Chr2:52392451-52392470 None:intergenic 40.0%
GACAACTATGGCGATCATAT+TGG - Chr2:52392768-52392787 MsG0280009462.01.T01:intron 40.0%
GACACACACATTGTCATTCT+AGG - Chr2:52388874-52388893 MsG0280009462.01.T01:intron 40.0%
GCTGGATTCTTTATTGGAGA+TGG - Chr2:52387975-52387994 MsG0280009462.01.T01:CDS 40.0%
GCTTCACTTCTAATTTCAGG+GGG - Chr2:52391856-52391875 MsG0280009462.01.T01:CDS 40.0%
GGGTTCAGTTTCAGTTGTTA+AGG - Chr2:52388432-52388451 MsG0280009462.01.T01:CDS 40.0%
GTGGTCGCATTTGTAGTTAT+AGG + Chr2:52391316-52391335 None:intergenic 40.0%
GTTGTTTATTGCTCAGCTAC+TGG - Chr2:52389814-52389833 MsG0280009462.01.T01:intron 40.0%
GTTTCACCAACCACAAGAAT+GGG - Chr2:52392342-52392361 MsG0280009462.01.T01:intron 40.0%
TAAAGGAGCTTCAAAGGAAG+AGG - Chr2:52393352-52393371 MsG0280009462.01.T01:CDS 40.0%
TACATTCCGCCACAAACATT+GGG + Chr2:52392173-52392192 None:intergenic 40.0%
TACCATGGAAACAAGCATGA+AGG + Chr2:52387921-52387940 None:intergenic 40.0%
TCACTTTCAGAATCACTAGG+CGG + Chr2:52393438-52393457 None:intergenic 40.0%
TCCCTTGCAGTATCATCAAT+TGG + Chr2:52388911-52388930 None:intergenic 40.0%
TGAATCCCTATCAAAGGCTT+AGG + Chr2:52392452-52392471 None:intergenic 40.0%
TGTTTCACCAACCACAAGAA+TGG - Chr2:52392341-52392360 MsG0280009462.01.T01:intron 40.0%
TTCCAATGATCTTACTCAGG+TGG - Chr2:52388224-52388243 MsG0280009462.01.T01:intron 40.0%
TTCTTTATTGGAGATGGAGC+TGG - Chr2:52387981-52388000 MsG0280009462.01.T01:intron 40.0%
TTTGGATCATAAGTAGGCTC+AGG + Chr2:52387765-52387784 None:intergenic 40.0%
! AGCCTTTTTATACGCATGCT+AGG + Chr2:52392675-52392694 None:intergenic 40.0%
! CAGATACGTAAAGGTGCATA+TGG + Chr2:52391820-52391839 None:intergenic 40.0%
! GGGACTTATTTCCCTGATTT+TGG - Chr2:52389892-52389911 MsG0280009462.01.T01:intron 40.0%
! TTACTCAGGTGGATTTCTGT+TGG - Chr2:52388235-52388254 MsG0280009462.01.T01:intron 40.0%
! TTCAGTGTGGTCCATCTTTT+TGG + Chr2:52391254-52391273 None:intergenic 40.0%
! TTGATGATACTGCAAGGGAT+TGG - Chr2:52388912-52388931 MsG0280009462.01.T01:intron 40.0%
! TTGCAATGGACTTGAAAGCA+AGG - Chr2:52391759-52391778 MsG0280009462.01.T01:CDS 40.0%
! TTGTGGCGGAATGTATTTGT+GGG - Chr2:52392178-52392197 MsG0280009462.01.T01:intron 40.0%
! TTTGTGGCGGAATGTATTTG+TGG - Chr2:52392177-52392196 MsG0280009462.01.T01:intron 40.0%
!! AATTTTAGCAGCAACTCACG+AGG + Chr2:52393181-52393200 None:intergenic 40.0%
!! AGCTCTAGAACTAGTTGCAA+TGG - Chr2:52391745-52391764 MsG0280009462.01.T01:intron 40.0%
!! CTGCATCACATAGAGCATTT+TGG - Chr2:52391605-52391624 MsG0280009462.01.T01:intron 40.0%
!! GACATTGGTTTATGCTTGTC+AGG - Chr2:52387836-52387855 MsG0280009462.01.T01:intron 40.0%
!! GTGGTTGGTGAAACAAAATC+AGG + Chr2:52392336-52392355 None:intergenic 40.0%
!!! CTTTTTTACCACCTTCAGTG+TGG + Chr2:52391267-52391286 None:intergenic 40.0%
!!! GTGTTTTTTTCACCACTTCC+TGG + Chr2:52390337-52390356 None:intergenic 40.0%
!!! TGATGTTTTGTTGGCTTCCT+TGG - Chr2:52389072-52389091 MsG0280009462.01.T01:intron 40.0%
AAACACGGCATGTAGATACC+GGG + Chr2:52393247-52393266 None:intergenic 45.0%
AATAGTTGCTGGCATGGAGT+GGG - Chr2:52392130-52392149 MsG0280009462.01.T01:intron 45.0%
AATCCAGGTGCTCTTGAGAA+AGG - Chr2:52391713-52391732 MsG0280009462.01.T01:intron 45.0%
ACATTCCGCCACAAACATTG+GGG + Chr2:52392172-52392191 None:intergenic 45.0%
ACGGAGTAAAGGAGCTTCAA+AGG - Chr2:52393346-52393365 MsG0280009462.01.T01:CDS 45.0%
ACTGCACAAGCTGTTGCATA+CGG + Chr2:52389330-52389349 None:intergenic 45.0%
AGAATGGGCACTTGAACATG+AGG - Chr2:52392357-52392376 MsG0280009462.01.T01:intron 45.0%
AGCCATACTCAGTGCAACTA+TGG + Chr2:52392212-52392231 None:intergenic 45.0%
AGCGGTGAAAATTGTCCTTG+TGG + Chr2:52392422-52392441 None:intergenic 45.0%
AGTCATAGGTCTGCAGAGTA+CGG - Chr2:52392993-52393012 MsG0280009462.01.T01:intron 45.0%
AGTGAAAAGTCTTGGGTGTG+CGG - Chr2:52388493-52388512 MsG0280009462.01.T01:intron 45.0%
ATCCAGGTGCTCTTGAGAAA+GGG - Chr2:52391714-52391733 MsG0280009462.01.T01:intron 45.0%
ATGCTTGCAGATCGAGACAT+TGG - Chr2:52387821-52387840 MsG0280009462.01.T01:intron 45.0%
ATGTCGCACACTTAGCTACA+AGG - Chr2:52391887-52391906 MsG0280009462.01.T01:CDS 45.0%
CAATAAACAACCCGAGCTTC+AGG + Chr2:52389805-52389824 None:intergenic 45.0%
CAGACTTGAAGTTTGATGCC+AGG - Chr2:52388260-52388279 MsG0280009462.01.T01:intron 45.0%
CAGGAGAGATTTGGATGACA+TGG - Chr2:52388279-52388298 MsG0280009462.01.T01:intron 45.0%
CATGTCATCCAAATCTCTCC+TGG + Chr2:52388281-52388300 None:intergenic 45.0%
CCACACTGAAGGTGGTAAAA+AGG - Chr2:52391264-52391283 MsG0280009462.01.T01:CDS 45.0%
CCTTCCCTAAGCCTTTGATA+GGG - Chr2:52392444-52392463 MsG0280009462.01.T01:intron 45.0%
CTCATAGCATCATCTGACAG+AGG - Chr2:52389298-52389317 MsG0280009462.01.T01:intron 45.0%
CTCTGTCAGATGATGCTATG+AGG + Chr2:52389300-52389319 None:intergenic 45.0%
GAAGCAAATGGACACTCTGA+AGG - Chr2:52391208-52391227 MsG0280009462.01.T01:intron 45.0%
GATAAGAAGCCGACGAAAAC+TGG - Chr2:52389653-52389672 MsG0280009462.01.T01:intron 45.0%
GATGTCTCTACAATCGGATC+TGG + Chr2:52387720-52387739 None:intergenic 45.0%
GCTAGGGCTGGATTCTTTAT+TGG - Chr2:52387969-52387988 MsG0280009462.01.T01:CDS 45.0%
GTCCTATAAAAAGGGACGGA+TGG + Chr2:52388547-52388566 None:intergenic 45.0%
GTGGAGATCCATAGATAGCT+TGG + Chr2:52387695-52387714 None:intergenic 45.0%
GTTGGCTGTACTGTTATGCT+AGG - Chr2:52390787-52390806 MsG0280009462.01.T01:intron 45.0%
GTTTGATGCCAGGAGAGATT+TGG - Chr2:52388270-52388289 MsG0280009462.01.T01:intron 45.0%
TCTCAACTCCCCAATGTTTG+TGG - Chr2:52392161-52392180 MsG0280009462.01.T01:intron 45.0%
TGCATCTGAACCTCGCAATA+TGG - Chr2:52389837-52389856 MsG0280009462.01.T01:intron 45.0%
TGCCATAGTTGCACTGAGTA+TGG - Chr2:52392207-52392226 MsG0280009462.01.T01:intron 45.0%
TGTCGCACACTTAGCTACAA+GGG - Chr2:52391888-52391907 MsG0280009462.01.T01:CDS 45.0%
TGTTCAAGTGCCCATTCTTG+TGG + Chr2:52392355-52392374 None:intergenic 45.0%
! ACAAGGCTTTTCTCCTTCCA+TGG + Chr2:52388055-52388074 None:intergenic 45.0%
! ACTGCTTGACCAGTTTTCGT+CGG + Chr2:52389665-52389684 None:intergenic 45.0%
! AGTTCAGGCTTTTGTGGCAA+TGG + Chr2:52393220-52393239 None:intergenic 45.0%
! ATATGGTTCGTCTTGGCCTT+TGG - Chr2:52389863-52389882 MsG0280009462.01.T01:intron 45.0%
! CCTTTTTACCACCTTCAGTG+TGG + Chr2:52391506-52391525 None:intergenic 45.0%
! CGAGATTTTCCTGAAACGTC+AGG + Chr2:52393390-52393409 None:intergenic 45.0%
! CTCCATCCGTCCCTTTTTAT+AGG - Chr2:52388542-52388561 MsG0280009462.01.T01:intron 45.0%
! GCATTGCAGGTATGCCTTTT+GGG - Chr2:52388311-52388330 MsG0280009462.01.T01:intron 45.0%
! GTTCAGGCTTTTGTGGCAAT+GGG + Chr2:52393219-52393238 None:intergenic 45.0%
! TATGGTTCGTCTTGGCCTTT+GGG - Chr2:52389864-52389883 MsG0280009462.01.T01:intron 45.0%
! TGCATTGCAGGTATGCCTTT+TGG - Chr2:52388310-52388329 MsG0280009462.01.T01:intron 45.0%
! TGTGGCGGAATGTATTTGTG+GGG - Chr2:52392179-52392198 MsG0280009462.01.T01:intron 45.0%
!! GATCATGTGATTTGGTCACC+TGG - Chr2:52390060-52390079 MsG0280009462.01.T01:intron 45.0%
!! GTCGGCTTCTTATCCTTTTC+GGG + Chr2:52389647-52389666 None:intergenic 45.0%
!! TGTTGAAGGTGTCTCTACCA+TGG + Chr2:52387936-52387955 None:intergenic 45.0%
!! TTTGGCCTTTTTGCAGCCAT+TGG + Chr2:52391236-52391255 None:intergenic 45.0%
!!! CGTCGGCTTCTTATCCTTTT+CGG + Chr2:52389648-52389667 None:intergenic 45.0%
AAAGGCTTAGGGAAGGCAAG+CGG + Chr2:52392440-52392459 None:intergenic 50.0%
AACACATTCCCAGTGGTGCT+AGG - Chr2:52387952-52387971 MsG0280009462.01.T01:CDS 50.0%
AACACGGCATGTAGATACCG+GGG + Chr2:52393246-52393265 None:intergenic 50.0%
AACAGTCGCTGGGCTAATCT+GGG - Chr2:52388019-52388038 MsG0280009462.01.T01:intron 50.0%
AAGATGGACCACACTGAAGG+TGG - Chr2:52391256-52391275 MsG0280009462.01.T01:CDS 50.0%
AAGGTGCATATGGCTGAGAG+TGG + Chr2:52391810-52391829 None:intergenic 50.0%
AATAAGTCCCAGCTCCCCAA+AGG + Chr2:52389882-52389901 None:intergenic 50.0%
ACCTAGCGGTCAATAGTTGC+TGG - Chr2:52392119-52392138 MsG0280009462.01.T01:intron 50.0%
AGGCTCAACTACCTGAAGCT+CGG - Chr2:52389791-52389810 MsG0280009462.01.T01:intron 50.0%
AGGTGCCAATGGCTGCAAAA+AGG - Chr2:52391228-52391247 MsG0280009462.01.T01:CDS 50.0%
AGTTCCTACTGCAGTGAGAC+TGG - Chr2:52392939-52392958 MsG0280009462.01.T01:intron 50.0%
ATAGTTGCTGGCATGGAGTG+GGG - Chr2:52392131-52392150 MsG0280009462.01.T01:intron 50.0%
ATCATATTGGGCAAGCCACC+AGG - Chr2:52392781-52392800 MsG0280009462.01.T01:intron 50.0%
ATGGGTGCAAGTTGCATTGC+AGG - Chr2:52388298-52388317 MsG0280009462.01.T01:intron 50.0%
ATTGGAGATGGAGCTGGTGT+AGG - Chr2:52387987-52388006 MsG0280009462.01.T01:intron 50.0%
CAAAAGCCTGAACTTCTCCC+CGG - Chr2:52393226-52393245 MsG0280009462.01.T01:intron 50.0%
CAACTCCCCAATGTTTGTGG+CGG - Chr2:52392164-52392183 MsG0280009462.01.T01:intron 50.0%
CAAGTGCCCATTCTTGTGGT+TGG + Chr2:52392351-52392370 None:intergenic 50.0%
CAATAGTTGCTGGCATGGAG+TGG - Chr2:52392129-52392148 MsG0280009462.01.T01:intron 50.0%
CACCACTGGGAATGTGTTGA+AGG + Chr2:52387950-52387969 None:intergenic 50.0%
CACCTTCAACACATTCCCAG+TGG - Chr2:52387945-52387964 MsG0280009462.01.T01:CDS 50.0%
CACGTGCAGCATGTTGCATA+AGG + Chr2:52390150-52390169 None:intergenic 50.0%
CACTTGAACATGAGGAGCCA+TGG - Chr2:52392365-52392384 MsG0280009462.01.T01:intron 50.0%
CCCTATCAAAGGCTTAGGGA+AGG + Chr2:52392447-52392466 None:intergenic 50.0%
CTGCACAAGCTGTTGCATAC+GGG + Chr2:52389329-52389348 None:intergenic 50.0%
CTTATGCAACATGCTGCACG+TGG - Chr2:52390148-52390167 MsG0280009462.01.T01:intron 50.0%
GAAGCAAATGGACACGCTGA+AGG - Chr2:52391447-52391466 MsG0280009462.01.T01:CDS 50.0%
GATGGAGCTGGTGTAGGTAA+AGG - Chr2:52387993-52388012 MsG0280009462.01.T01:intron 50.0%
GCAACTATTGACCGCTAGGT+TGG + Chr2:52392119-52392138 None:intergenic 50.0%
GCCTTCCCTAAGCCTTTGAT+AGG - Chr2:52392443-52392462 MsG0280009462.01.T01:intron 50.0%
GCGACCATCCAAGCTATCTA+TGG - Chr2:52387684-52387703 MsG0280009462.01.T01:CDS 50.0%
GGATCATAAGTAGGCTCAGG+CGG + Chr2:52387762-52387781 None:intergenic 50.0%
GTAAAGGTCGAACAGTCGCT+GGG - Chr2:52388009-52388028 MsG0280009462.01.T01:intron 50.0%
GTATGCAACAGCTTGTGCAG+TGG - Chr2:52389329-52389348 MsG0280009462.01.T01:intron 50.0%
GTCATAGGTCTGCAGAGTAC+GGG - Chr2:52392994-52393013 MsG0280009462.01.T01:intron 50.0%
TAGATACCGGGGAGAAGTTC+AGG + Chr2:52393235-52393254 None:intergenic 50.0%
TCATAGGTCTGCAGAGTACG+GGG - Chr2:52392995-52393014 MsG0280009462.01.T01:intron 50.0%
TCCAGGTGCTCTTGAGAAAG+GGG - Chr2:52391715-52391734 MsG0280009462.01.T01:intron 50.0%
TCTACAATCGGATCTGGGTG+TGG + Chr2:52387714-52387733 None:intergenic 50.0%
TTCACCAGTCTCACTGCAGT+AGG + Chr2:52392946-52392965 None:intergenic 50.0%
TTGGCAAGTCCTGACGTTTC+AGG - Chr2:52393378-52393397 MsG0280009462.01.T01:CDS 50.0%
! ACACATTCCCAGTGGTGCTA+GGG - Chr2:52387953-52387972 MsG0280009462.01.T01:CDS 50.0%
! ATGGTTCGTCTTGGCCTTTG+GGG - Chr2:52389865-52389884 MsG0280009462.01.T01:intron 50.0%
! CTCTGTGCCGCTATCATGAA+TGG + Chr2:52390817-52390836 None:intergenic 50.0%
! GGGAGAAGTTCAGGCTTTTG+TGG + Chr2:52393226-52393245 None:intergenic 50.0%
!! ATTGACCGCTAGGTTGGTGA+TGG + Chr2:52392113-52392132 None:intergenic 50.0%
!! GCTTCAAAGGAAGAGGCACT+TGG - Chr2:52393359-52393378 MsG0280009462.01.T01:CDS 50.0%
!! TTTGGCCTTTTTGCAGCCCT+TGG + Chr2:52391475-52391494 None:intergenic 50.0%
AATCCAGCCCTAGCACCACT+GGG + Chr2:52387963-52387982 None:intergenic 55.0%
AGGTGCCAAGGGCTGCAAAA+AGG - Chr2:52391467-52391486 MsG0280009462.01.T01:CDS 55.0%
ATCTGGGAGAACTGGCACCA+TGG - Chr2:52388035-52388054 MsG0280009462.01.T01:intron 55.0%
CAACAGCTTGTGCAGTGGTG+TGG - Chr2:52389334-52389353 MsG0280009462.01.T01:intron 55.0%
CATAGGTCTGCAGAGTACGG+GGG - Chr2:52392996-52393015 MsG0280009462.01.T01:intron 55.0%
CCAGGTGCTCTTGAGAAAGG+GGG - Chr2:52391716-52391735 MsG0280009462.01.T01:intron 55.0%
CTGGGCTAATCTGGGAGAAC+TGG - Chr2:52388027-52388046 MsG0280009462.01.T01:intron 55.0%
GAACAGTCGCTGGGCTAATC+TGG - Chr2:52388018-52388037 MsG0280009462.01.T01:intron 55.0%
GCCAGCAACTATTGACCGCT+AGG + Chr2:52392123-52392142 None:intergenic 55.0%
GCGGTCAATAGTTGCTGGCA+TGG - Chr2:52392124-52392143 MsG0280009462.01.T01:intron 55.0%
GGCTCAACTACCTGAAGCTC+GGG - Chr2:52389792-52389811 MsG0280009462.01.T01:intron 55.0%
GGGTCAATGGCCACATGTAC+AGG + Chr2:52391655-52391674 None:intergenic 55.0%
GGTAAAGGTCGAACAGTCGC+TGG - Chr2:52388008-52388027 MsG0280009462.01.T01:intron 55.0%
! GCTCTTGAGAAAGGGGGTGT+TGG - Chr2:52391722-52391741 MsG0280009462.01.T01:intron 55.0%
! TAAATGGTGGGACCCCTTCC+CGG - Chr2:52389404-52389423 MsG0280009462.01.T01:intron 55.0%
! TATGCGGGAGCTCTAGTGCA+CGG - Chr2:52389435-52389454 MsG0280009462.01.T01:intron 55.0%
!! GGACACTCTGAAGGTGCCAA+TGG - Chr2:52391217-52391236 MsG0280009462.01.T01:CDS 55.0%
ACTAGAGCTCCCGCATACGC+AGG + Chr2:52389432-52389451 None:intergenic 60.0%
ATCACTAGGCGGCTGCAGCT+TGG + Chr2:52393427-52393446 None:intergenic 60.0%
CTAGAGCTCCCGCATACGCA+GGG + Chr2:52389431-52389450 None:intergenic 60.0%
CTTGTGCAGTGGTGTGGACC+CGG - Chr2:52389340-52389359 MsG0280009462.01.T01:intron 60.0%
GAATCCAGCCCTAGCACCAC+TGG + Chr2:52387964-52387983 None:intergenic 60.0%
GAGTACGGGGGAAGCAAGGA+CGG - Chr2:52393008-52393027 MsG0280009462.01.T01:intron 60.0%
GGGAGAACTGGCACCATGGA+AGG - Chr2:52388039-52388058 MsG0280009462.01.T01:intron 60.0%
TGCAGAGTACGGGGGAAGCA+AGG - Chr2:52393004-52393023 MsG0280009462.01.T01:intron 60.0%
TGGTGTGGACCCGGGTTTGA+TGG - Chr2:52389349-52389368 MsG0280009462.01.T01:intron 60.0%
TTGTGCAGTGGTGTGGACCC+GGG - Chr2:52389341-52389360 MsG0280009462.01.T01:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+GGG - Chr2:52389436-52389455 MsG0280009462.01.T01:intron 60.0%
! ATTCCCAGTGGTGCTAGGGC+TGG - Chr2:52387957-52387976 MsG0280009462.01.T01:CDS 60.0%
! GTCTTGGCCTTTGGGGAGCT+GGG - Chr2:52389872-52389891 MsG0280009462.01.T01:intron 60.0%
!! CCCCCTTTCTCAAGAGCACC+TGG + Chr2:52391719-52391738 None:intergenic 60.0%
!! GGACACGCTGAAGGTGCCAA+GGG - Chr2:52391456-52391475 MsG0280009462.01.T01:CDS 60.0%
!! TGGACACGCTGAAGGTGCCA+AGG - Chr2:52391455-52391474 MsG0280009462.01.T01:CDS 60.0%
AGGCGGCTGCACTGCAGACA+AGG + Chr2:52387745-52387764 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + Chr2:52389419-52389438 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - Chr2:52389419-52389438 MsG0280009462.01.T01:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG + Chr2:52389420-52389439 None:intergenic 65.0%
GCTGGCATGGAGTGGGGCAA+AGG - Chr2:52392137-52392156 MsG0280009462.01.T01:intron 65.0%
TACGGGGGAAGCAAGGACGG+AGG - Chr2:52393011-52393030 MsG0280009462.01.T01:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - Chr2:52389420-52389439 MsG0280009462.01.T01:intron 65.0%
! CGTCTTGGCCTTTGGGGAGC+TGG - Chr2:52389871-52389890 MsG0280009462.01.T01:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + Chr2:52389421-52389440 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + Chr2:52389425-52389444 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + Chr2:52389426-52389445 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 52387645 52393497 52387645 ID=MsG0280009462.01;Name=MsG0280009462.01
Chr2 mRNA 52387645 52393497 52387645 ID=MsG0280009462.01.T01;Parent=MsG0280009462.01;Name=MsG0280009462.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0|1|1|1|12|0|494
Chr2 exon 52393285 52393497 52393285 ID=MsG0280009462.01.T01:exon:24169;Parent=MsG0280009462.01.T01
Chr2 exon 52393070 52393200 52393070 ID=MsG0280009462.01.T01:exon:24168;Parent=MsG0280009462.01.T01
Chr2 exon 52392823 52392899 52392823 ID=MsG0280009462.01.T01:exon:24167;Parent=MsG0280009462.01.T01
Chr2 exon 52391752 52391933 52391752 ID=MsG0280009462.01.T01:exon:24166;Parent=MsG0280009462.01.T01
Chr2 exon 52391445 52391522 52391445 ID=MsG0280009462.01.T01:exon:24165;Parent=MsG0280009462.01.T01
Chr2 exon 52391217 52391349 52391217 ID=MsG0280009462.01.T01:exon:24164;Parent=MsG0280009462.01.T01
Chr2 exon 52389362 52389422 52389362 ID=MsG0280009462.01.T01:exon:24163;Parent=MsG0280009462.01.T01
Chr2 exon 52389186 52389267 52389186 ID=MsG0280009462.01.T01:exon:24162;Parent=MsG0280009462.01.T01
Chr2 exon 52388340 52388465 52388340 ID=MsG0280009462.01.T01:exon:24161;Parent=MsG0280009462.01.T01
Chr2 exon 52388092 52388235 52388092 ID=MsG0280009462.01.T01:exon:24160;Parent=MsG0280009462.01.T01
Chr2 exon 52387895 52387994 52387895 ID=MsG0280009462.01.T01:exon:24159;Parent=MsG0280009462.01.T01
Chr2 exon 52387645 52387802 52387645 ID=MsG0280009462.01.T01:exon:24158;Parent=MsG0280009462.01.T01
Chr2 CDS 52393285 52393497 52393285 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52393070 52393200 52393070 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52392823 52392899 52392823 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52391752 52391933 52391752 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52391445 52391522 52391445 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52391217 52391349 52391217 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52389362 52389422 52389362 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52389186 52389267 52389186 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52388340 52388465 52388340 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52388092 52388235 52388092 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52387895 52387994 52387895 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Chr2 CDS 52387645 52387802 52387645 ID=MsG0280009462.01.T01:cds;Parent=MsG0280009462.01.T01
Gene Sequence

>MsG0280009462.01.T01

ATGGTACATTTTACTGATACCAATGTCTCTTGTTATACAGCGACCATCCAAGCTATCTATGGATCTCCACACCCAGATCCGATTGTAGAGACATCTTCCTTGTCTGCAGTGCAGCCGCCTGAGCCTACTTATGATCCAAAGATTAAGAATGATTTGGAACGTTCAAAGGCATTGTCATGCTTGCAGATCGAGACATTGGTTTATGCTTGTCAGAGACACCTTCAACACATTCCCAGTGGTGCTAGGGCTGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACAGTCGCTGGGCTAATCTGGGAGAACTGGCACCATGGAAGGAGAAAAGCCTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGGAGAGATTTGGATGACATGGGTGCAAGTTGCATTGCAGTGCATGCTTTGAATAAACTGCCTTATACTAAGCTTGATACAAAGTCTGTTGGAGTTAAGGAGGGAGTTATTTTCTCGACATACAGTAGCCTCATAGCATCATCTGACAGAGGTCGTACCCGTATGCAACAGCTTGTGCAGTGGTGTGGACCCGGGTTTGATGGTCTTATAATATTTGATGAGTGTCATAAAGCAAAAAATTTGGTTCCCGAAAAGGATAAGAAGCCGACGAAAACTGGTCAAGCAGTACTTGATATACAGGCTCAACTACCTGAAGCTCGGGTTGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGTCTTGGCCTTTGGGGAGCTGGGACTTATTTCCCTGATTTTGGTGAATTTCTAGGTGCTCTTGAGAAAGGGGGTGTTGGAGCTCTAGAACTAGTTGCAATGGACTTGAAAGCAAGGGGGATGTATTTATGTCGCACACTTAGCTACAAGGGTGCTGAGTTTGAAATTATTGACGCACCATTAGATGATAGAATGATGCATGCGTATAAAAAGGCTACAGAAGTTTGGTTGGATTTGCGTAAGAAGTTGCAGTTTGTCATTGAGTTAATATCTGACAAAATTAACACTAGACAACTATGGCGATCATATTGGGCAAGCCACCAGAGATTCTTCAGACATATGTGTATGTCTGCTAAAGTTCCTACTGCAGTGAGACTGGTGAACCAAGCATTAATGGAAGACAAGTGTGTAGTCATAGGTCTGCAGAGTACGGGGGAAGCAAGGACGGAGGAAGCTGTTTCAAAATACGGCTCTGAATTTGATGACTTTATTTCTGGACCTCGTGAGTTGCTGCTAAAATTTGTTGAAGACAATTTCCCATTGCCACAAAAGCCTGAACTTCTCCCCGAAGATGACGGAGTAAAGGAGCTTCAAAGGAAGAGGCACTTGGCAAGTCCTGACGTTTCAGGAAAATCTCGAGTCAGAAAAGTAGCCAAGCTGCAGCCGCCTAGTGATTCTGAAAGTGATGAAGAATCTGAAAGTGAGCTTCAAGCAAATTTTTATTAA
Protein sequence

>MsG0280009462.01.T01

MVHFTDTNVSCYTATIQAIYGSPHPDPIVETSSLSAVQPPEPTYDPKIKNDLERSKALSCLQIETLVYACQRHLQHIPSGARAGFFIGDGAGVGKGRTVAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDMGASCIAVHALNKLPYTKLDTKSVGVKEGVIFSTYSSLIASSDRGRTRMQQLVQWCGPGFDGLIIFDECHKAKNLVPEKDKKPTKTGQAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGAGTYFPDFGEFLGALEKGGVGALELVAMDLKARGMYLCRTLSYKGAEFEIIDAPLDDRMMHAYKKATEVWLDLRKKLQFVIELISDKINTRQLWRSYWASHQRFFRHMCMSAKVPTAVRLVNQALMEDKCVVIGLQSTGEARTEEAVSKYGSEFDDFISGPRELLLKFVEDNFPLPQKPELLPEDDGVKELQRKRHLASPDVSGKSRVRKVAKLQPPSDSESDEESESELQANFY*