AlfalfaGEDB | MsG0380016589.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016589.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016589.01.T01	XP_024634007.1	73.077	182	0	1	1	133	236	417	1.09E-79	262

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016589.01.T01	G7J884	73.077	182	0	1	1	133	236	417	5.21e-80	262

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047793.01	MsG0380016589.01	0.818745	1.670032e-52	1.260692e-49
MsG0080048374.01	MsG0380016589.01	0.902818	6.570072e-79	9.472590e-75
MsG0080048602.01	MsG0380016589.01	0.841604	4.295459e-58	6.344915e-55
MsG0180000146.01	MsG0380016589.01	0.861720	8.410978e-64	2.401952e-60
MsG0180000741.01	MsG0380016589.01	0.807574	4.729941e-50	2.643668e-47
MsG0180001315.01	MsG0380016589.01	0.802559	5.297259e-49	2.602771e-46
MsG0180002074.01	MsG0380016589.01	0.802448	5.583852e-49	2.735932e-46
MsG0180003303.01	MsG0380016589.01	0.844370	7.884225e-59	1.270052e-55
MsG0180003799.01	MsG0380016589.01	0.847069	1.459823e-59	2.564374e-56
MsG0180003937.01	MsG0380016589.01	0.804060	2.589366e-49	1.322238e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016589.01.T01	MTR_3g092250	73.077	182	1	1	133	236	417	1.32e-83	262
MsG0380016589.01.T01	MTR_3g092250	73.077	182	1	1	133	234	415	1.42e-83	262
MsG0380016589.01.T01	MTR_3g092250	73.077	182	1	1	133	234	415	1.42e-83	262

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016589.01.T01	AT5G53620	35.417	192	74	4	1	145	224	412	1.31e-30	116
MsG0380016589.01.T01	AT5G53620	35.417	192	74	4	1	145	224	412	1.31e-30	116
MsG0380016589.01.T01	AT5G53620	35.417	192	74	4	1	145	224	412	1.31e-30	116

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Find 100 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAACTTGGGCAAT+CGG	0.452222	3:+85409193	MsG0380016589.01.T01:five_prime_UTR
AAACATCCATCTCACGAACA+CGG	0.597650	3:-85410481	None:intergenic
AAATCAGTACCTCATCGTCA+GGG	0.668873	3:-85408501	None:intergenic
AAATGTCCAACATGAGACTG+AGG	0.680087	3:-85412432	None:intergenic
AACAACAAACCAGTCATTAC+AGG	0.401306	3:+85410511	MsG0380016589.01.T01:CDS
AACATCCATCTCACGAACAC+GGG	0.585933	3:-85410480	None:intergenic
AAGCACTGCACCTGAATTGA+CGG	0.472312	3:-85411125	None:intergenic
AAGGCGTGAAATACTTCAGA+TGG	0.547959	3:+85409421	MsG0380016589.01.T01:five_prime_UTR
AATCAATTTGACTTGAATGG+AGG	0.575465	3:+85411023	MsG0380016589.01.T01:CDS
AATGCAGTAACTTGACCAGG+TGG	0.756788	3:-85412355	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGAGACACAAATACAA+AGG	-	Chr3:85410661-85410680	None:intergenic	30.0%
AAAGGACATACAATATAGTG+GGG	-	Chr3:85410643-85410662	None:intergenic	30.0%
AACCACAACAGTATTGTAAA+TGG	-	Chr3:85412264-85412283	None:intergenic	30.0%
ACAAAGGACATACAATATAG+TGG	-	Chr3:85410645-85410664	None:intergenic	30.0%
ACAAATGAGAACTCAGATAA+TGG	+	Chr3:85411077-85411096	MsG0380016589.01.T01:CDS	30.0%
ACAGTAAAGAGATTATCTTC+GGG	-	Chr3:85409288-85409307	None:intergenic	30.0%
ACCACAACAGTATTGTAAAT+GGG	-	Chr3:85412263-85412282	None:intergenic	30.0%
ACCGAAATAAGATAGTTAAG+AGG	-	Chr3:85409995-85410014	None:intergenic	30.0%
AGAGAACTATATATGAGGTA+AGG	+	Chr3:85409219-85409238	MsG0380016589.01.T01:intron	30.0%
CAAAGGACATACAATATAGT+GGG	-	Chr3:85410644-85410663	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	85408205	85412510	85408205	ID=MsG0380016589.01;Name=MsG0380016589.01
Chr3	mRNA	85408205	85412510	85408205	ID=MsG0380016589.01.T01;Parent=MsG0380016589.01;Name=MsG0380016589.01.T01;_AED=0.49;_eAED=0.49;_QI=875\|0.87\|0.77\|1\|0.25\|0.22\|9\|0\|165
Chr3	exon	85408205	85408513	85408205	ID=MsG0380016589.01.T01:exon:11307;Parent=MsG0380016589.01.T01
Chr3	exon	85409186	85409235	85409186	ID=MsG0380016589.01.T01:exon:11308;Parent=MsG0380016589.01.T01
Chr3	exon	85409322	85409549	85409322	ID=MsG0380016589.01.T01:exon:11309;Parent=MsG0380016589.01.T01
Chr3	exon	85409881	85409979	85409881	ID=MsG0380016589.01.T01:exon:11310;Parent=MsG0380016589.01.T01
Chr3	exon	85410072	85410125	85410072	ID=MsG0380016589.01.T01:exon:11311;Parent=MsG0380016589.01.T01
Chr3	exon	85410214	85410325	85410214	ID=MsG0380016589.01.T01:exon:11312;Parent=MsG0380016589.01.T01
Chr3	exon	85410414	85410592	85410414	ID=MsG0380016589.01.T01:exon:11313;Parent=MsG0380016589.01.T01
Chr3	exon	85411014	85411136	85411014	ID=MsG0380016589.01.T01:exon:11314;Parent=MsG0380016589.01.T01
Chr3	exon	85412292	85412510	85412292	ID=MsG0380016589.01.T01:exon:11315;Parent=MsG0380016589.01.T01
Chr3	five_prime_UTR	85408205	85408513	85408205	ID=MsG0380016589.01.T01:five_prime_utr;Parent=MsG0380016589.01.T01
Chr3	five_prime_UTR	85409186	85409235	85409186	ID=MsG0380016589.01.T01:five_prime_utr;Parent=MsG0380016589.01.T01
Chr3	five_prime_UTR	85409322	85409549	85409322	ID=MsG0380016589.01.T01:five_prime_utr;Parent=MsG0380016589.01.T01
Chr3	five_prime_UTR	85409881	85409979	85409881	ID=MsG0380016589.01.T01:five_prime_utr;Parent=MsG0380016589.01.T01
Chr3	five_prime_UTR	85410072	85410125	85410072	ID=MsG0380016589.01.T01:five_prime_utr;Parent=MsG0380016589.01.T01
Chr3	five_prime_UTR	85410214	85410325	85410214	ID=MsG0380016589.01.T01:five_prime_utr;Parent=MsG0380016589.01.T01
Chr3	five_prime_UTR	85410414	85410436	85410414	ID=MsG0380016589.01.T01:five_prime_utr;Parent=MsG0380016589.01.T01
Chr3	CDS	85410437	85410592	85410437	ID=MsG0380016589.01.T01:cds;Parent=MsG0380016589.01.T01
Chr3	CDS	85411014	85411136	85411014	ID=MsG0380016589.01.T01:cds;Parent=MsG0380016589.01.T01
Chr3	CDS	85412292	85412510	85412292	ID=MsG0380016589.01.T01:cds;Parent=MsG0380016589.01.T01

Gene Sequence

>MsG0380016589.01.T01

ATGTTTAAAGAGGAACAGATTAGAGAGGCTCAAGCATGGATAACCCGTGTTCGTGAGATGGATGTTTTCCAATCAACAACAAACCAGTCATTACAGGCTGAATTGCGAGAGCGCACGGAACAATATAATCAGCTATGGATGAATGTACAGAGACAGGAAAATGGAAATCAATTTGACTTGAATGGAGGCAATGCTTCAGGTGGAAATACTGGTCTCCTTACAAATGAGAACTCAGATAATGGTCCTCCATTTTCAACTTCTGGCAATCCGTCAATTCAGACTGATCATACTCATGGTGTCGCTATTGCTCCATCATCTCTGATTGTCCCCCACCCGTACCTTCCACCTGGTCAAGTTACTGCATTGCATCCATTTGTTATGCATCAACAAGGAGTGCCAATTCTGTTGCATCACATGTCCCTCAGTCTCATGTTGGACATTTTCATCCAGTGCCCACAATGTCAACTATGCAACAGTGGCAAAATCAACAGTATCTAG

Protein sequence

>MsG0380016589.01.T01

MFKEEQIREAQAWITRVREMDVFQSTTNQSLQAELRERTEQYNQLWMNVQRQENGNQFDLNGGNASGGNTGLLTNENSDNGPPFSTSGNPSIQTDHTHGVAIAPSSLIVPHPYLPPGQVTALHPFVMHQQGVPILLHHMSLSLMLDIFIQCPQCQLCNSGKINSI*