AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000146.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000146.01.T01 MTR_1g022345 75.887 141 3 1 181 321 7 116 1.19e-62 210
MsG0180000146.01.T01 MTR_5g082570 70.213 141 11 1 181 321 7 116 2.36e-57 196
MsG0180000146.01.T01 MTR_1g022330 84.783 46 7 0 70 115 80 125 1.11e-18 81.3
MsG0180000146.01.T01 MTR_1g022330 67.308 52 14 1 80 128 45 96 8.14e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000146.01.T01 AT3G28730 52.817 142 36 1 180 321 6 116 2.35e-40 149

Find 101 sgRNAs with CRISPR-Local

Find 594 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTTGGATCAATCCTTTA+AGG 0.088934 1:-2006029 MsG0180000146.01.T01:CDS
ATAGACCCTCTTCACCTTAA+AGG 0.181938 1:+2006015 None:intergenic
TGATTCCTCATCTTCATCTT+TGG 0.254410 1:-2006044 MsG0180000146.01.T01:CDS
CTGACGAATCCTTGGCTGAT+TGG 0.280062 1:+2003865 None:intergenic
CCGTGATAAAATAATGTCTA+TGG 0.288359 1:-1999385 MsG0180000146.01.T01:three_prime_UTR
TTTCTGTTACTGGGCGCAAT+TGG 0.293918 1:-2000541 MsG0180000146.01.T01:CDS
TGAACTTGAACTTGAACTTT+TGG 0.301669 1:-2006101 MsG0180000146.01.T01:CDS
CAGTTACTCCGAAGGTGTTT+TGG 0.314648 1:+2000579 None:intergenic
GAGAAGCAACTTTCTGTTAC+TGG 0.317850 1:-2000551 MsG0180000146.01.T01:CDS
TTCTGTTACTGGGCGCAATT+GGG 0.318614 1:-2000540 MsG0180000146.01.T01:CDS
TATTATTGTGCTGCAGAATC+CGG 0.326173 1:-2001001 MsG0180000146.01.T01:CDS
ACACCAAGTTGATTCGTCTT+TGG 0.335862 1:+2000871 None:intergenic
ATCTCAGAAAGATTCTTTGA+TGG 0.362156 1:-1999564 MsG0180000146.01.T01:intron
GATCTTCATCACCAACAAAC+TGG 0.364930 1:+1999510 None:intergenic
TCTAACTCATCACTAGATTT+CGG 0.373012 1:+2008680 None:intergenic
TGACGAATCCTTGGCTGATT+GGG 0.374533 1:+2003866 None:intergenic
GATGCTGTTGTTACATTTGA+GGG 0.383536 1:-1999339 MsG0180000146.01.T01:three_prime_UTR
TGGTAAGAAATTTCTCTTCA+AGG 0.408675 1:-2006077 MsG0180000146.01.T01:CDS
GGCGAACCACACTGCTGTAC+TGG 0.410835 1:+1999101 None:intergenic
GTTGATAAGGCGGACATAAC+GGG 0.414369 1:-2000913 MsG0180000146.01.T01:CDS
ATCACCAACAAACTGGGTAT+TGG 0.417370 1:+1999517 None:intergenic
CAATACATTACCTTGGTGTA+AGG 0.418775 1:+1999307 None:intergenic
CGGTGCCGCCACGGCCGCCG+AGG 0.437836 1:+2002025 None:intergenic
AGTTCCAATACCCAGTTTGT+TGG 0.440167 1:-1999521 MsG0180000146.01.T01:three_prime_UTR
AGTTAGATGATTCATCTAAA+GGG 0.445851 1:-2008664 MsG0180000146.01.T01:CDS
CGTTGGCATGGTCTAGTCTC+CGG 0.446256 1:-2008706 MsG0180000146.01.T01:CDS
CATCACTAGATTTCGGAATC+CGG 0.446723 1:+2008687 None:intergenic
CTTGGTGTTCAGATCAAAGA+TGG 0.447302 1:-2000856 MsG0180000146.01.T01:CDS
ATCTAAAGGGATTCGAAACC+AGG 0.450514 1:-2008651 MsG0180000146.01.T01:CDS
TTGTACAGTGATCCGTCCTC+TGG 0.451298 1:+2003960 None:intergenic
AACATTACCCTCGGCGGCCG+TGG 0.454721 1:-2002033 MsG0180000146.01.T01:CDS
GTGCTTGGCTGACGAATCCT+TGG 0.457278 1:+2003857 None:intergenic
TAAGAAGGTCAAGACAAGAT+TGG 0.457565 1:-2006637 MsG0180000146.01.T01:intron
ACACCTTCGGAGTAACTGTT+GGG 0.460966 1:-2000574 MsG0180000146.01.T01:CDS
AGATGCTGTTGTTACATTTG+AGG 0.462575 1:-1999340 MsG0180000146.01.T01:three_prime_UTR
ATTATTGTGCTGCAGAATCC+GGG 0.463684 1:-2001000 MsG0180000146.01.T01:CDS
TGAAGATCGCCCTCCTGCTC+AGG 0.466330 1:-1999495 MsG0180000146.01.T01:intron
ATTTCAACTTAGATTGAAAA+CGG 0.468988 1:-2006139 MsG0180000146.01.T01:intron
GAGTTAGATGATTCATCTAA+AGG 0.470355 1:-2008665 MsG0180000146.01.T01:CDS
CCAAACCTGCTGTTCCTCCC+TGG 0.471750 1:+2008633 None:intergenic
TGTTGATAAGGCGGACATAA+CGG 0.474692 1:-2000914 MsG0180000146.01.T01:CDS
TGTCTCCCAAACAACCTTCA+AGG 0.475898 1:-1999819 MsG0180000146.01.T01:three_prime_UTR
TGGGGAGAAGTTGATCTAAA+CGG 0.476817 1:-2000521 MsG0180000146.01.T01:CDS
CAAATCAATTGATGTTGATA+AGG 0.479324 1:-2000926 MsG0180000146.01.T01:CDS
CGAAACCAGGGAGGAACAGC+AGG 0.480062 1:-2008638 MsG0180000146.01.T01:intron
ATCAATCCTTTAAGGTGAAG+AGG 0.480621 1:-2006021 MsG0180000146.01.T01:CDS
TTCACCGCCGATGCAAGCTC+TGG 0.489277 1:-2008737 MsG0180000146.01.T01:CDS
ACAGACAAACTCACCTGAGC+AGG 0.497300 1:+1999482 None:intergenic
AGTTTCTTCCAAAACACCTT+CGG 0.497818 1:-2000587 MsG0180000146.01.T01:CDS
TTTCACGTGGATGACACAAC+TGG 0.498298 1:-1999774 MsG0180000146.01.T01:three_prime_UTR
AAGGATTAGGAGATAAACTT+AGG 0.501349 1:+1999067 None:intergenic
AGAAGCAACTTTCTGTTACT+GGG 0.502319 1:-2000550 MsG0180000146.01.T01:CDS
TCTATGGCTGATGTTGGTGC+TGG 0.508943 1:-1999369 MsG0180000146.01.T01:three_prime_UTR
ACAAACTGGGTATTGGAACT+TGG 0.516545 1:+1999524 None:intergenic
GGGTATTGGAACTTGGTACA+TGG 0.520299 1:+1999531 None:intergenic
CTGGAACGTTTGCGTTGGCA+TGG 0.520888 1:-2008718 MsG0180000146.01.T01:CDS
ATTACCCTCGGCGGCCGTGG+CGG 0.524515 1:-2002030 MsG0180000146.01.T01:CDS
TGATGAATTAGAGATCATAA+AGG 0.527336 1:-2005993 MsG0180000146.01.T01:CDS
CGGACATAACGGGCGTAACA+TGG 0.530617 1:-2000903 MsG0180000146.01.T01:CDS
ATGGCTGATGTTGGTGCTGG+AGG 0.532027 1:-1999366 MsG0180000146.01.T01:three_prime_UTR
GGTGCCGCCACGGCCGCCGA+GGG 0.543217 1:+2002026 None:intergenic
AACACCTTCGGAGTAACTGT+TGG 0.545941 1:-2000575 MsG0180000146.01.T01:CDS
AGTTCAAGTTCAAGTTCAAG+AGG 0.546215 1:+2006106 None:intergenic
CAGTGATCCGTCCTCTGGAT+CGG 0.549042 1:+2003965 None:intergenic
ATCTTCATCACCAACAAACT+GGG 0.552179 1:+1999511 None:intergenic
CGTTCCAGAGCTTGCATCGG+CGG 0.564257 1:+2008733 None:intergenic
TCTCTTTCTCGCCACCATGA+CGG 0.565013 1:-2002072 MsG0180000146.01.T01:CDS
GTTCCAAAGACGAATCAACT+TGG 0.567452 1:-2000874 MsG0180000146.01.T01:CDS
GACAAACTCACCTGAGCAGG+AGG 0.567937 1:+1999485 None:intergenic
TGACACAACTGGAGCAAATG+AGG 0.569007 1:-1999763 MsG0180000146.01.T01:intron
TGGTTGCGATCATACTCCTA+AGG 0.582026 1:-2005957 MsG0180000146.01.T01:intron
TTGATCCAAAGATGAAGATG+AGG 0.585093 1:+2006039 None:intergenic
AACGGGCGTAACATGGATGA+AGG 0.587136 1:-2000896 MsG0180000146.01.T01:CDS
TCTGTTACTGGGCGCAATTG+GGG 0.591812 1:-2000539 MsG0180000146.01.T01:CDS
TCAGGATCCGATCCAGAGGA+CGG 0.595673 1:-2003972 MsG0180000146.01.T01:intron
AAGCTCTGGAACGTTTGCGT+TGG 0.596088 1:-2008723 MsG0180000146.01.T01:CDS
ATCAATTGATGTTGATAAGG+CGG 0.597783 1:-2000923 MsG0180000146.01.T01:CDS
TCAATCCTTTAAGGTGAAGA+GGG 0.600047 1:-2006020 MsG0180000146.01.T01:CDS
TCTCTTCACAACATTACCCT+CGG 0.607216 1:-2002042 MsG0180000146.01.T01:CDS
GTCTCCCAAACAACCTTCAA+GGG 0.607354 1:-1999818 MsG0180000146.01.T01:three_prime_UTR
TTATGGAAGAGACAGGGAGG+TGG 0.608219 1:-2000949 MsG0180000146.01.T01:CDS
GAGAAGTTGATCTAAACGGT+TGG 0.615087 1:-2000517 MsG0180000146.01.T01:intron
GAGAGCTTACGGTGCCGCCA+CGG 0.622395 1:+2002016 None:intergenic
TTGGTGTTCAGATCAAAGAT+GGG 0.623826 1:-2000855 MsG0180000146.01.T01:CDS
CTCCCCAACAGTTACTCCGA+AGG 0.624094 1:+2000571 None:intergenic
TTGTTGAACCCAATCAGCCA+AGG 0.632990 1:-2003874 MsG0180000146.01.T01:CDS
AAACGTTCCAGAGCTTGCAT+CGG 0.635690 1:+2008730 None:intergenic
GACGGAGAACTACCTGATCA+CGG 0.641013 1:+2000809 None:intergenic
ATAATGTCTATGGCTGATGT+TGG 0.645958 1:-1999375 MsG0180000146.01.T01:three_prime_UTR
GAAGAGATGACCGTCCGTCA+TGG 0.646156 1:+2002058 None:intergenic
TTTCTCGCCACCATGACGGA+CGG 0.646406 1:-2002068 MsG0180000146.01.T01:CDS
TTATTGTGCTGCAGAATCCG+GGG 0.667311 1:-2000999 MsG0180000146.01.T01:CDS
TCTAAAGGGATTCGAAACCA+GGG 0.671092 1:-2008650 MsG0180000146.01.T01:CDS
CACCTTCGGAGTAACTGTTG+GGG 0.674663 1:-2000573 MsG0180000146.01.T01:CDS
GAGATGACCGTCCGTCATGG+TGG 0.684087 1:+2002061 None:intergenic
ACAAACTCACCTGAGCAGGA+GGG 0.692093 1:+1999486 None:intergenic
CAAAATCCAGTACAGCAGTG+TGG 0.693832 1:-1999107 MsG0180000146.01.T01:three_prime_UTR
TGTGATGTTGGAGTTTCACG+TGG 0.716384 1:-1999787 MsG0180000146.01.T01:three_prime_UTR
AAAGGGATTCGAAACCAGGG+AGG 0.746311 1:-2008647 MsG0180000146.01.T01:CDS
GTATTGCAATCCTTACACCA+AGG 0.765044 1:-1999317 MsG0180000146.01.T01:intron
CTTCACAACATTACCCTCGG+CGG 0.817382 1:-2002039 MsG0180000146.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAATATAATTTTTATA+TGG + Chr1:2000120-2000139 None:intergenic 0.0%
!!! ATAAATAATATTATTTTATA+TGG + Chr1:2000264-2000283 None:intergenic 0.0%
!! AACAAAATTGTTAAAAAAAA+TGG + Chr1:2004700-2004719 None:intergenic 10.0%
!! ACAAAATTGTTAAAAAAAAT+GGG + Chr1:2004699-2004718 None:intergenic 10.0%
!! ATTCTTAAACAAAAATTTAA+TGG + Chr1:2002966-2002985 None:intergenic 10.0%
!! TTCTTAAACAAAAATTTAAT+GGG + Chr1:2002965-2002984 None:intergenic 10.0%
!! TTTAATAAAAGAAAATTTGT+GGG - Chr1:2001042-2001061 MsG0180000146.01.T01:CDS 10.0%
!!! CTAATGAAAAATATTTTTAT+GGG + Chr1:2003647-2003666 None:intergenic 10.0%
!!! TCTAATGAAAAATATTTTTA+TGG + Chr1:2003648-2003667 None:intergenic 10.0%
!!! TTTTAATAAAAGAAAATTTG+TGG - Chr1:2001041-2001060 MsG0180000146.01.T01:CDS 10.0%
!!! TTTTCTTGTTAAAAATATAT+CGG - Chr1:2000673-2000692 MsG0180000146.01.T01:intron 10.0%
!! AAAAGTTTGATATCTTAATT+AGG + Chr1:2005360-2005379 None:intergenic 15.0%
!! AAAATAATAATGAAAAGATG+AGG - Chr1:2006720-2006739 MsG0180000146.01.T01:intron 15.0%
!! AGTAGATTTATTGAAAAAAA+TGG - Chr1:2006069-2006088 MsG0180000146.01.T01:CDS 15.0%
!! GTAGATTTATTGAAAAAAAT+GGG - Chr1:2006070-2006089 MsG0180000146.01.T01:CDS 15.0%
!! TAAATTGTCAGAAAAAAATA+TGG + Chr1:2005647-2005666 None:intergenic 15.0%
!! TATAATGTCTAAAAATTCAT+CGG - Chr1:2004798-2004817 MsG0180000146.01.T01:intron 15.0%
!! TCAAAACTATATGAAAAAAA+TGG - Chr1:2003898-2003917 MsG0180000146.01.T01:CDS 15.0%
!! TTAACAAAAGCAAAAAAAAA+TGG - Chr1:2000589-2000608 MsG0180000146.01.T01:CDS 15.0%
!! TTAACAAGAAAAATATTATG+CGG + Chr1:2000665-2000684 None:intergenic 15.0%
!! TTTATATGGTATCTATATTA+TGG + Chr1:2000393-2000412 None:intergenic 15.0%
!!! AAATATCTTTGAAAATAGTA+GGG + Chr1:2007492-2007511 None:intergenic 15.0%
!!! AATTTATTTGGTATTTTCAT+TGG + Chr1:2004129-2004148 None:intergenic 15.0%
!!! AATTTCTTCTTTTTTGAAAA+AGG + Chr1:2000036-2000055 None:intergenic 15.0%
!!! ATAATATGAAGTGTTATATT+TGG - Chr1:2004298-2004317 MsG0180000146.01.T01:intron 15.0%
!!! ATCCAATAATTTTAAAAGTA+AGG + Chr1:2003738-2003757 None:intergenic 15.0%
!!! ATTAGAATACAATTTGTTAA+GGG + Chr1:2004220-2004239 None:intergenic 15.0%
!!! CTATTTTTTTTTTTACACTT+TGG - Chr1:2005472-2005491 MsG0180000146.01.T01:intron 15.0%
!!! GATTTTCTTATTTTTGAAAA+AGG + Chr1:2000469-2000488 None:intergenic 15.0%
!!! TAAATATCTTTGAAAATAGT+AGG + Chr1:2007493-2007512 None:intergenic 15.0%
!!! TACTTTTAAAATTATTGGAT+CGG - Chr1:2003738-2003757 MsG0180000146.01.T01:intron 15.0%
!!! TAGATTTCTTTTTTTGAAAA+AGG + Chr1:2000182-2000201 None:intergenic 15.0%
!!! TATTAGAATACAATTTGTTA+AGG + Chr1:2004221-2004240 None:intergenic 15.0%
!!! TCCAATAATTTTAAAAGTAA+GGG + Chr1:2003737-2003756 None:intergenic 15.0%
!!! TTTGTTTATTTGCAATTTTT+GGG + Chr1:2001368-2001387 None:intergenic 15.0%
!!! TTTTGTTTATTTGCAATTTT+TGG + Chr1:2001369-2001388 None:intergenic 15.0%
!! AAAAAGGAATTACAAAAGTT+AGG + Chr1:2005901-2005920 None:intergenic 20.0%
!! AAAAGGAATTACAAAAGTTA+GGG + Chr1:2005900-2005919 None:intergenic 20.0%
!! AAACATGTAAATACATATTC+AGG + Chr1:2007034-2007053 None:intergenic 20.0%
!! AAATAGAACCAACTTAAAAA+TGG + Chr1:2007621-2007640 None:intergenic 20.0%
!! AACATGTAAATACATATTCA+GGG + Chr1:2007033-2007052 None:intergenic 20.0%
!! AATAGAACCAACTTAAAAAT+GGG + Chr1:2007620-2007639 None:intergenic 20.0%
!! AATCATGAGATTTATTAAAG+TGG - Chr1:2002983-2003002 MsG0180000146.01.T01:intron 20.0%
!! ATCAAACACATAAATTTACT+CGG + Chr1:2007393-2007412 None:intergenic 20.0%
!! ATTTCAACTTAGATTGAAAA+CGG - Chr1:2001676-2001695 MsG0180000146.01.T01:intron 20.0%
!! TAAAAATGGGTACAAAAAAA+TGG + Chr1:2007607-2007626 None:intergenic 20.0%
!! TAAACTTAGGAAGTAAAAAT+AGG + Chr1:2008738-2008757 None:intergenic 20.0%
!! TAACGAATAAAGAAGAAAAA+TGG + Chr1:2004165-2004184 None:intergenic 20.0%
!! TATAATTAATTGAACCTGTT+TGG - Chr1:2004183-2004202 MsG0180000146.01.T01:intron 20.0%
!! TGTCAGTTTGATAAAAATAA+AGG + Chr1:2003568-2003587 None:intergenic 20.0%
!! TTAAATATCCATCTAGTATT+AGG - Chr1:2006227-2006246 MsG0180000146.01.T01:intron 20.0%
!! TTATAGACAATATTTGTTCT+AGG - Chr1:2001471-2001490 MsG0180000146.01.T01:intron 20.0%
!! TTCCTTATAAAAAGAAACAT+CGG - Chr1:2007570-2007589 MsG0180000146.01.T01:intron 20.0%
!!! AATAATTTTAAAAGTAAGGG+GGG + Chr1:2003734-2003753 None:intergenic 20.0%
!!! ATAAGTTTTGTAAGACTATT+TGG + Chr1:2006598-2006617 None:intergenic 20.0%
!!! ATTGGGTAATTATTTTGAAT+TGG - Chr1:2001444-2001463 MsG0180000146.01.T01:intron 20.0%
!!! CAATAATTTTAAAAGTAAGG+GGG + Chr1:2003735-2003754 None:intergenic 20.0%
!!! CCAATAATTTTAAAAGTAAG+GGG + Chr1:2003736-2003755 None:intergenic 20.0%
!!! CGATTTTCAAATATTAGTTA+CGG + Chr1:2003029-2003048 None:intergenic 20.0%
!!! GAAAAACAATTTTATCTTGA+TGG + Chr1:2001121-2001140 None:intergenic 20.0%
!!! GATTTGTTTTCTTTTTAAGA+AGG - Chr1:2001163-2001182 MsG0180000146.01.T01:intron 20.0%
!!! TAAGTTGGTTCTATTTTTTT+GGG - Chr1:2007625-2007644 MsG0180000146.01.T01:intron 20.0%
!!! TCTAAGATATTACAAACAAA+AGG + Chr1:2003170-2003189 None:intergenic 20.0%
!!! TGACATTTGTAAAATCATTT+TGG - Chr1:2008396-2008415 MsG0180000146.01.T01:intron 20.0%
!!! TGATAAGAAATTTGTTGTTT+AGG - Chr1:1999780-1999799 MsG0180000146.01.T01:three_prime_UTR 20.0%
!!! TGTAAAATCATTTTGGTATT+AGG - Chr1:2008403-2008422 MsG0180000146.01.T01:intron 20.0%
!!! TTAAGTTGGTTCTATTTTTT+TGG - Chr1:2007624-2007643 MsG0180000146.01.T01:intron 20.0%
!!! TTGGGTAATTATTTTGAATT+GGG - Chr1:2001445-2001464 MsG0180000146.01.T01:intron 20.0%
!!! TTTATTTTATCAAACCGATA+CGG - Chr1:2003265-2003284 MsG0180000146.01.T01:intron 20.0%
!!! TTTTTTGAGTTGATACTTAT+CGG - Chr1:2001922-2001941 MsG0180000146.01.T01:intron 20.0%
! AAAAAAGACTAAAAGTGATG+TGG + Chr1:2002854-2002873 None:intergenic 25.0%
! AAAATTCATCGGTAAAAAAG+TGG - Chr1:2004809-2004828 MsG0180000146.01.T01:intron 25.0%
! AAATCATAAACCCTAATACT+AGG - Chr1:2005923-2005942 MsG0180000146.01.T01:intron 25.0%
! AAGGAATTCAATTGTTTGTT+TGG - Chr1:2007066-2007085 MsG0180000146.01.T01:intron 25.0%
! AATCATAAACCCTAATACTA+GGG - Chr1:2005924-2005943 MsG0180000146.01.T01:intron 25.0%
! ACACATTTAAAAAGTTGTAG+TGG + Chr1:2002929-2002948 None:intergenic 25.0%
! ACATGTAAATACATATTCAG+GGG + Chr1:2007032-2007051 None:intergenic 25.0%
! AGTTAGATGATTCATCTAAA+GGG - Chr1:1999151-1999170 MsG0180000146.01.T01:three_prime_UTR 25.0%
! ATACATGATACTACAACTAT+AGG - Chr1:2002293-2002312 MsG0180000146.01.T01:intron 25.0%
! ATCTTGTTACAGCAAATTAT+AGG - Chr1:2008369-2008388 MsG0180000146.01.T01:intron 25.0%
! ATGAACATAGTTTAGTTAGT+AGG + Chr1:2004878-2004897 None:intergenic 25.0%
! ATGAATGAACTAAATCACAT+CGG + Chr1:2005251-2005270 None:intergenic 25.0%
! ATGAGATGTTACAAACAAAT+AGG + Chr1:2003465-2003484 None:intergenic 25.0%
! ATGAGTTGTTGAAAATTAGT+GGG - Chr1:2000761-2000780 MsG0180000146.01.T01:intron 25.0%
! ATGTTTGACATCGTTTATAA+TGG - Chr1:2007420-2007439 MsG0180000146.01.T01:intron 25.0%
! ATTCATCTATAAACACTTCT+TGG - Chr1:2005182-2005201 MsG0180000146.01.T01:intron 25.0%
! ATTGATATAAATGCGAAGAA+GGG - Chr1:1999735-1999754 MsG0180000146.01.T01:intron 25.0%
! CAAATCAATTGATGTTGATA+AGG - Chr1:2006889-2006908 MsG0180000146.01.T01:intron 25.0%
! CAGATAAAAATATATTCTGG+AGG - Chr1:2006839-2006858 MsG0180000146.01.T01:intron 25.0%
! CGTACAAAAGATTATAATGA+TGG + Chr1:2004551-2004570 None:intergenic 25.0%
! CTAGAAAAAAAGAAGTTATC+TGG + Chr1:2001966-2001985 None:intergenic 25.0%
! CTCTTATGATAGTTTAATTG+AGG - Chr1:2001886-2001905 MsG0180000146.01.T01:intron 25.0%
! GAAATGGAAATAGAAACATA+AGG + Chr1:2007916-2007935 None:intergenic 25.0%
! GAGTAAATTTATGTGTTTGA+TGG - Chr1:2007392-2007411 MsG0180000146.01.T01:intron 25.0%
! TAAAAAACGCAATTCCAAAA+TGG + Chr1:2008207-2008226 None:intergenic 25.0%
! TAAAAAATATATGTGCAGTC+TGG - Chr1:2000831-2000850 MsG0180000146.01.T01:CDS 25.0%
! TATGAGTTGTTGAAAATTAG+TGG - Chr1:2000760-2000779 MsG0180000146.01.T01:intron 25.0%
! TCATGCACATATAAAAATCA+TGG + Chr1:2000810-2000829 None:intergenic 25.0%
! TCCTTATAAAAAGAAACATC+GGG - Chr1:2007571-2007590 MsG0180000146.01.T01:intron 25.0%
! TCTAATGAATTGATACAGTT+TGG - Chr1:2008102-2008121 MsG0180000146.01.T01:intron 25.0%
! TGAAAACAACTTATGAACAA+TGG - Chr1:2006417-2006436 MsG0180000146.01.T01:intron 25.0%
! TGATGAATTAGAGATCATAA+AGG - Chr1:2001822-2001841 MsG0180000146.01.T01:intron 25.0%
! TGCAAGGATATCAATTTATT+TGG + Chr1:2004141-2004160 None:intergenic 25.0%
! TTCTTCGCATTTATATCAAT+GGG + Chr1:1999735-1999754 None:intergenic 25.0%
!! AATCACACTTTACACATTTT+TGG + Chr1:2006154-2006173 None:intergenic 25.0%
!! AATTACCCTGAATTTTACAA+AGG + Chr1:2007551-2007570 None:intergenic 25.0%
!! AGATCAATCTTTTTCTTGAA+AGG + Chr1:2008601-2008620 None:intergenic 25.0%
!! ATAGTTAAGTGTGTTTTTCT+TGG + Chr1:2005101-2005120 None:intergenic 25.0%
!! ATATTGCTCATTTAAAGTCA+TGG + Chr1:2001088-2001107 None:intergenic 25.0%
!! ATCAACTAACGTAAGTTTTT+GGG + Chr1:2006454-2006473 None:intergenic 25.0%
!! CAATATTTGTTCTAGGTTTA+AGG - Chr1:2001478-2001497 MsG0180000146.01.T01:intron 25.0%
!! GTTTTTCTTGGAGTAATATT+TGG + Chr1:2005089-2005108 None:intergenic 25.0%
!! TATCAACTAACGTAAGTTTT+TGG + Chr1:2006455-2006474 None:intergenic 25.0%
!! TATGTTTCTATTTCCATTTC+AGG - Chr1:2007916-2007935 MsG0180000146.01.T01:intron 25.0%
!! TCTAACACAATCTTGATTTT+TGG - Chr1:2005586-2005605 MsG0180000146.01.T01:intron 25.0%
!! TTAGATTGTTGATGAATCTA+AGG - Chr1:2001584-2001603 MsG0180000146.01.T01:intron 25.0%
!! TTATTTGGTATTTTCATTGG+TGG + Chr1:2004126-2004145 None:intergenic 25.0%
!!! AATTACACTTGTCATTTTTG+CGG - Chr1:2008662-2008681 MsG0180000146.01.T01:CDS 25.0%
!!! ACGTTTTATACTTATTTTGC+AGG - Chr1:2007188-2007207 MsG0180000146.01.T01:intron 25.0%
!!! ACTTCTTTTTTTCTAGATTG+TGG - Chr1:2001970-2001989 MsG0180000146.01.T01:intron 25.0%
!!! AGAAAGGTTTGCATTTTAAT+GGG + Chr1:2002267-2002286 None:intergenic 25.0%
!!! AGCCTCGTATTTTAAATAAA+AGG - Chr1:2003682-2003701 MsG0180000146.01.T01:intron 25.0%
!!! AGGGTTTATGATTTTGAAAA+AGG + Chr1:2005917-2005936 None:intergenic 25.0%
!!! ATAAAGGCTTTTGTTGATTA+TGG - Chr1:2001838-2001857 MsG0180000146.01.T01:intron 25.0%
!!! ATAAATGTGTTGAGTTTTGA+AGG + Chr1:2003240-2003259 None:intergenic 25.0%
!!! ATGACGTTCACTTTTTTATT+GGG - Chr1:2001552-2001571 MsG0180000146.01.T01:intron 25.0%
!!! CATGTTTTTGATGTTGAAAA+AGG - Chr1:2007047-2007066 MsG0180000146.01.T01:intron 25.0%
!!! CCATAGACATTATTTTATCA+CGG + Chr1:2008433-2008452 None:intergenic 25.0%
!!! CCCCTTACTTTTAAAATTAT+TGG - Chr1:2003733-2003752 MsG0180000146.01.T01:intron 25.0%
!!! TATATTCTGGAGGAATTTTA+TGG - Chr1:2006849-2006868 MsG0180000146.01.T01:intron 25.0%
!!! TATGACGTTCACTTTTTTAT+TGG - Chr1:2001551-2001570 MsG0180000146.01.T01:intron 25.0%
!!! TTATTTTGTCTTAGATGAAG+TGG + Chr1:2000962-2000981 None:intergenic 25.0%
!!! TTTTGGAATTGCGTTTTTTA+TGG - Chr1:2008207-2008226 MsG0180000146.01.T01:intron 25.0%
!!! TTTTGTACCCATTTTTAAGT+TGG - Chr1:2007610-2007629 MsG0180000146.01.T01:intron 25.0%
AAAGAAGAAAAATGGTTGCA+AGG + Chr1:2004157-2004176 None:intergenic 30.0%
AAAGCAAGGTTGAATATATG+AGG + Chr1:2003708-2003727 None:intergenic 30.0%
AAAGTGAGAAGTTGTTAAGA+TGG - Chr1:2007717-2007736 MsG0180000146.01.T01:intron 30.0%
AAATTTACTCGGAGTATAGT+AGG + Chr1:2007382-2007401 None:intergenic 30.0%
AAGTTGTTAAGATGGAAATG+TGG - Chr1:2007725-2007744 MsG0180000146.01.T01:intron 30.0%
AATCAACACATTTCATGCTT+GGG - Chr1:2002536-2002555 MsG0180000146.01.T01:intron 30.0%
AATTTGCCTCCTAAAATTGT+AGG - Chr1:2001327-2001346 MsG0180000146.01.T01:intron 30.0%
ACAAATTGCACACAATAACT+AGG + Chr1:2006208-2006227 None:intergenic 30.0%
ACAATGTAAGATGGTATAGA+TGG + Chr1:2004450-2004469 None:intergenic 30.0%
ACACTATGTCCCATATAAAT+AGG + Chr1:1999861-1999880 None:intergenic 30.0%
ACTATGAAGTTCTCATATGT+TGG - Chr1:2005116-2005135 MsG0180000146.01.T01:intron 30.0%
ACTTCAGAAGTAAAAGTTCA+CGG + Chr1:2003326-2003345 None:intergenic 30.0%
AGCTGTTTATGTATGCTATA+TGG - Chr1:2006375-2006394 MsG0180000146.01.T01:intron 30.0%
AGGAATATTGTGATATGCAA+AGG + Chr1:2004858-2004877 None:intergenic 30.0%
AGTTAGGGTTATTCAAAAAG+AGG + Chr1:2005885-2005904 None:intergenic 30.0%
AGTTGTTAAGATGGAAATGT+GGG - Chr1:2007726-2007745 MsG0180000146.01.T01:intron 30.0%
ATAAGCTGATTATCCAAACA+GGG + Chr1:2006253-2006272 None:intergenic 30.0%
ATATGAAGTGAAACTTTGTC+TGG - Chr1:2004252-2004271 MsG0180000146.01.T01:intron 30.0%
ATCAAAAAGATCCACCATAA+AGG + Chr1:2007847-2007866 None:intergenic 30.0%
ATCTCAGAAAGATTCTTTGA+TGG - Chr1:2008251-2008270 MsG0180000146.01.T01:intron 30.0%
ATCTTTGGATCAATCCTTTA+AGG - Chr1:2001786-2001805 MsG0180000146.01.T01:intron 30.0%
ATGCCTTAAAATCTTAAGTC+TGG + Chr1:2002136-2002155 None:intergenic 30.0%
ATTGTCCAATATGACAAACT+TGG + Chr1:2004383-2004402 None:intergenic 30.0%
ATTTGCCTCCTAAAATTGTA+GGG - Chr1:2001328-2001347 MsG0180000146.01.T01:intron 30.0%
CAAATCATCAACGTTTAGAT+TGG + Chr1:2007126-2007145 None:intergenic 30.0%
CAAATCCAAGTTTGTCATAT+TGG - Chr1:2004375-2004394 MsG0180000146.01.T01:intron 30.0%
CACTCAAAATACAAACTGAA+TGG + Chr1:2007523-2007542 None:intergenic 30.0%
CATGTAAATACATATTCAGG+GGG + Chr1:2007031-2007050 None:intergenic 30.0%
CATTGATATAAATGCGAAGA+AGG - Chr1:1999734-1999753 MsG0180000146.01.T01:intron 30.0%
CCAATTTGACAAAAACATGA+AGG - Chr1:2003504-2003523 MsG0180000146.01.T01:intron 30.0%
CCGTGATAAAATAATGTCTA+TGG - Chr1:2008430-2008449 MsG0180000146.01.T01:intron 30.0%
CTATGAAGTTCTCATATGTT+GGG - Chr1:2005117-2005136 MsG0180000146.01.T01:intron 30.0%
CTTCTTCGCATTTATATCAA+TGG + Chr1:1999736-1999755 None:intergenic 30.0%
GAAAAAAAGATGCATCTTGT+TGG - Chr1:2005145-2005164 MsG0180000146.01.T01:intron 30.0%
GAGAAATCATAAGGATGTAT+AGG + Chr1:2005223-2005242 None:intergenic 30.0%
GAGTTAGATGATTCATCTAA+AGG - Chr1:1999150-1999169 MsG0180000146.01.T01:three_prime_UTR 30.0%
GGGCAGATAAAAATATATTC+TGG - Chr1:2006836-2006855 MsG0180000146.01.T01:intron 30.0%
GGTTATTCAAAAAGAGGAAA+TGG + Chr1:2005879-2005898 None:intergenic 30.0%
TAAGCGCATATCATGATAAA+TGG + Chr1:2006294-2006313 None:intergenic 30.0%
TAAGTATAAAACGTCAACAC+AGG + Chr1:2007182-2007201 None:intergenic 30.0%
TAATCAACACATTTCATGCT+TGG - Chr1:2002535-2002554 MsG0180000146.01.T01:intron 30.0%
TATCATAAGAGCAATACCTT+AGG + Chr1:2001877-2001896 None:intergenic 30.0%
TATGAAAAAAATGGCACACA+TGG - Chr1:2003907-2003926 MsG0180000146.01.T01:CDS 30.0%
TATGAGTTCACAATGTAAGA+TGG + Chr1:2004459-2004478 None:intergenic 30.0%
TATTACGTACAGATTATGCA+GGG - Chr1:2002873-2002892 MsG0180000146.01.T01:intron 30.0%
TCAAAAAGATCCACCATAAA+GGG + Chr1:2007846-2007865 None:intergenic 30.0%
TCCAAATCCAAACCATATTA+GGG + Chr1:2001257-2001276 None:intergenic 30.0%
TCTAACTCATCACTAGATTT+CGG + Chr1:1999138-1999157 None:intergenic 30.0%
TGAACTTCCACGAAAATATA+AGG + Chr1:2002607-2002626 None:intergenic 30.0%
TGAATAGGAAAGTTGTATAG+TGG + Chr1:2003398-2003417 None:intergenic 30.0%
TGCCTTAAAATCTTAAGTCT+GGG + Chr1:2002135-2002154 None:intergenic 30.0%
TGGTAAGAAATTTCTCTTCA+AGG - Chr1:2001738-2001757 MsG0180000146.01.T01:intron 30.0%
TGTAATGAATGTTTAGTTGG+TGG - Chr1:2005610-2005629 MsG0180000146.01.T01:intron 30.0%
TGTTGTACAATACATTACCT+TGG + Chr1:2008518-2008537 None:intergenic 30.0%
TTATTACGTACAGATTATGC+AGG - Chr1:2002872-2002891 MsG0180000146.01.T01:intron 30.0%
TTCCAAATCCAAACCATATT+AGG + Chr1:2001258-2001277 None:intergenic 30.0%
TTGACACAAAACTGATTGTA+TGG - Chr1:2004092-2004111 MsG0180000146.01.T01:intron 30.0%
TTTCGCACAATTTATCTTGA+CGG + Chr1:2001010-2001029 None:intergenic 30.0%
! AAATTTGCTTTATTGTGCAG+AGG - Chr1:2008625-2008644 MsG0180000146.01.T01:intron 30.0%
! AGTCCATACAAAATTTTCCA+AGG + Chr1:2002354-2002373 None:intergenic 30.0%
! AGTGTTTTCATTAGCTATCT+TGG - Chr1:2006506-2006525 MsG0180000146.01.T01:intron 30.0%
! ATCAATTGATGTTGATAAGG+CGG - Chr1:2006892-2006911 MsG0180000146.01.T01:intron 30.0%
! CAGAAAGGTTTGCATTTTAA+TGG + Chr1:2002268-2002287 None:intergenic 30.0%
! TATTATGCGGACAACTTTTT+CGG + Chr1:2000652-2000671 None:intergenic 30.0%
! TCATGCTCAAATTTGAAATG+AGG - Chr1:2004324-2004343 MsG0180000146.01.T01:intron 30.0%
! TGAACTTGAACTTGAACTTT+TGG - Chr1:2001714-2001733 MsG0180000146.01.T01:intron 30.0%
! TGTCCTTGGAAAATTTTGTA+TGG - Chr1:2002348-2002367 MsG0180000146.01.T01:intron 30.0%
! TTATATTTTCGTGGAAGTTC+AGG - Chr1:2002606-2002625 MsG0180000146.01.T01:intron 30.0%
! TTGGTCAAAGTGTTAATCAA+AGG + Chr1:2007107-2007126 None:intergenic 30.0%
!! AAACGTTGATGATTTGGATT+TGG - Chr1:2007130-2007149 MsG0180000146.01.T01:intron 30.0%
!! AAATTTGTTGTTTAGGCCTT+AGG - Chr1:1999787-1999806 MsG0180000146.01.T01:three_prime_UTR 30.0%
!! AATTTGTTGTTTAGGCCTTA+GGG - Chr1:1999788-1999807 MsG0180000146.01.T01:three_prime_UTR 30.0%
!! ACAAATGAGTTGAGTTTTTG+AGG + Chr1:2003542-2003561 None:intergenic 30.0%
!! ATTCTGTTAACTTGTGTCAT+TGG - Chr1:2001426-2001445 MsG0180000146.01.T01:intron 30.0%
!! CAATCTAAACGTTGATGATT+TGG - Chr1:2007124-2007143 MsG0180000146.01.T01:intron 30.0%
!! CCTTCATGTTTTTGTCAAAT+TGG + Chr1:2003507-2003526 None:intergenic 30.0%
!! GAATATATTTTTATCTGCCC+CGG + Chr1:2006836-2006855 None:intergenic 30.0%
!! GGCCTTTTATTTAAAATACG+AGG + Chr1:2003687-2003706 None:intergenic 30.0%
!! GTTTTCTTGGCAATTTGTTT+AGG + Chr1:2002002-2002021 None:intergenic 30.0%
!! TTCTGTTAACTTGTGTCATT+GGG - Chr1:2001427-2001446 MsG0180000146.01.T01:intron 30.0%
!!! AATGTGGGTTCTTTTTTTTC+AGG - Chr1:2007741-2007760 MsG0180000146.01.T01:intron 30.0%
!!! AGGGTTTTCTTCTTTTTTGA+AGG - Chr1:1999754-1999773 MsG0180000146.01.T01:intron 30.0%
!!! ATGTGGGTTCTTTTTTTTCA+GGG - Chr1:2007742-2007761 MsG0180000146.01.T01:intron 30.0%
!!! GGAAGCATTTTACTTTGAAA+CGG - Chr1:1999635-1999654 MsG0180000146.01.T01:intron 30.0%
!!! GTTGTTATTTGGACATTTTC+AGG - Chr1:2003825-2003844 MsG0180000146.01.T01:intron 30.0%
!!! TGTTTAGTTGGTGGTTTTTA+TGG - Chr1:2005619-2005638 MsG0180000146.01.T01:intron 30.0%
!!! TTTATGGTGGATCTTTTTGA+TGG - Chr1:2007846-2007865 MsG0180000146.01.T01:intron 30.0%
AAATGCAGTCTTTCCCTTTA+TGG - Chr1:2007830-2007849 MsG0180000146.01.T01:intron 35.0%
AAATTTACCTGCTGATGAAG+AGG + Chr1:2002732-2002751 None:intergenic 35.0%
AACCAACATGTATTACCTAC+CGG - Chr1:2004938-2004957 MsG0180000146.01.T01:intron 35.0%
AATACCAAAGCTCCCTAATA+TGG - Chr1:2001242-2001261 MsG0180000146.01.T01:intron 35.0%
ACTATCACACATGTGATTGT+CGG + Chr1:2005328-2005347 None:intergenic 35.0%
AGAAGCAACTTTCTGTTACT+GGG - Chr1:2007265-2007284 MsG0180000146.01.T01:intron 35.0%
AGAGAGAAAACCCTAGTATT+AGG + Chr1:2005937-2005956 None:intergenic 35.0%
AGATGCTGTTGTTACATTTG+AGG - Chr1:2008475-2008494 MsG0180000146.01.T01:intron 35.0%
AGCATTGCTGCCTATTTATA+TGG - Chr1:1999848-1999867 MsG0180000146.01.T01:intron 35.0%
AGGGAAAAATGATGTGATGT+TGG - Chr1:2008016-2008035 MsG0180000146.01.T01:intron 35.0%
AGTTTCTTCCAAAACACCTT+CGG - Chr1:2007228-2007247 MsG0180000146.01.T01:intron 35.0%
ATAATGTCTATGGCTGATGT+TGG - Chr1:2008440-2008459 MsG0180000146.01.T01:intron 35.0%
ATACTATTCAAGCCCAAGTT+TGG + Chr1:2008164-2008183 None:intergenic 35.0%
ATATTGTGATATGCAAAGGC+TGG + Chr1:2004854-2004873 None:intergenic 35.0%
ATCAACACATTTCATGCTTG+GGG - Chr1:2002537-2002556 MsG0180000146.01.T01:intron 35.0%
ATCTTCATCACCAACAAACT+GGG + Chr1:2008307-2008326 None:intergenic 35.0%
ATTGTGACATGAGTCGATAT+TGG - Chr1:2004896-2004915 MsG0180000146.01.T01:intron 35.0%
CAATCGAGAATTCTATCGAT+AGG + Chr1:2004423-2004442 None:intergenic 35.0%
CTATCGATAGAATTCTCGAT+TGG - Chr1:2004421-2004440 MsG0180000146.01.T01:intron 35.0%
GAGAGAAAACCCTAGTATTA+GGG + Chr1:2005936-2005955 None:intergenic 35.0%
GATAAGCTGATTATCCAAAC+AGG + Chr1:2006254-2006273 None:intergenic 35.0%
GATGAGTGACATATGATAGA+TGG - Chr1:2003063-2003082 MsG0180000146.01.T01:intron 35.0%
GATGCTGTTGTTACATTTGA+GGG - Chr1:2008476-2008495 MsG0180000146.01.T01:intron 35.0%
GCAATGTTAAGCCTTCATTA+CGG - Chr1:2004483-2004502 MsG0180000146.01.T01:intron 35.0%
GCATTGCTGCCTATTTATAT+GGG - Chr1:1999849-1999868 MsG0180000146.01.T01:intron 35.0%
GCCTAAAATCATACCAAAAG+CGG - Chr1:2005280-2005299 MsG0180000146.01.T01:intron 35.0%
GGCTGTAATGAATGTTTAGT+TGG - Chr1:2005607-2005626 MsG0180000146.01.T01:intron 35.0%
TAAATACATATTCAGGGGGA+CGG + Chr1:2007027-2007046 None:intergenic 35.0%
TAAGAAGGTCAAGACAAGAT+TGG - Chr1:2001178-2001197 MsG0180000146.01.T01:intron 35.0%
TATCATGTATCAACGCAGAA+AGG + Chr1:2002283-2002302 None:intergenic 35.0%
TATTATTGTGCTGCAGAATC+CGG - Chr1:2006814-2006833 MsG0180000146.01.T01:intron 35.0%
TATTGTAGGCTGCAGTTAAT+AGG - Chr1:2008181-2008200 MsG0180000146.01.T01:intron 35.0%
TATTGTGATATGCAAAGGCT+GGG + Chr1:2004853-2004872 None:intergenic 35.0%
TATTTGGATATGTGACCTTC+TGG + Chr1:2005073-2005092 None:intergenic 35.0%
TCAAAAAGAGGAAATGGTGA+AGG + Chr1:2005873-2005892 None:intergenic 35.0%
TCATTAGCTGTTATGTGTCA+AGG - Chr1:2006666-2006685 MsG0180000146.01.T01:intron 35.0%
TCCTATTCAAGAATGTCTCA+AGG - Chr1:2003409-2003428 MsG0180000146.01.T01:intron 35.0%
TCCTTGAGACATTCTTGAAT+AGG + Chr1:2003413-2003432 None:intergenic 35.0%
TCGGAATGAGAGAAATCATA+AGG + Chr1:2005232-2005251 None:intergenic 35.0%
TGATGTAACAACCAGATTGA+AGG + Chr1:2007686-2007705 None:intergenic 35.0%
TGATTCCTCATCTTCATCTT+TGG - Chr1:2001771-2001790 MsG0180000146.01.T01:intron 35.0%
TGTGAGGAATATGCTACAAA+GGG + Chr1:2004731-2004750 None:intergenic 35.0%
TTCCATTTCAGGAAATATGC+TGG - Chr1:2007927-2007946 MsG0180000146.01.T01:intron 35.0%
TTGAATTACGTCGAGCAAAT+TGG - Chr1:2001401-2001420 MsG0180000146.01.T01:intron 35.0%
TTGAGGAAAGAAGATCGAAA+TGG + Chr1:2005850-2005869 None:intergenic 35.0%
TTGATCCAAAGATGAAGATG+AGG + Chr1:2001779-2001798 None:intergenic 35.0%
TTGGGCTTGAATAGTATTGT+AGG - Chr1:2008167-2008186 MsG0180000146.01.T01:intron 35.0%
TTGTGAGGAATATGCTACAA+AGG + Chr1:2004732-2004751 None:intergenic 35.0%
TTTGCCTCCTAAAATTGTAG+GGG - Chr1:2001329-2001348 MsG0180000146.01.T01:intron 35.0%
! ACAATAACTAGGTTTGAAGC+TGG + Chr1:2006197-2006216 None:intergenic 35.0%
! AGCCCAGACTTAAGATTTTA+AGG - Chr1:2002130-2002149 MsG0180000146.01.T01:intron 35.0%
! AGGAATTTTATGGAAGAGAC+AGG - Chr1:2006859-2006878 MsG0180000146.01.T01:intron 35.0%
! AGGTAATACATGTTGGTTGT+GGG + Chr1:2004936-2004955 None:intergenic 35.0%
! AGTATTCGACGTTGTTCTTT+TGG - Chr1:2003343-2003362 MsG0180000146.01.T01:intron 35.0%
! AGTTCAAGTTCAAGTTCAAG+AGG + Chr1:2001712-2001731 None:intergenic 35.0%
! CAATACATTACCTTGGTGTA+AGG + Chr1:2008511-2008530 None:intergenic 35.0%
! CTTGAACTTGAACTTTTGGT+TGG - Chr1:2001718-2001737 MsG0180000146.01.T01:intron 35.0%
! GCCCGATGTTTCTTTTTATA+AGG + Chr1:2007575-2007594 None:intergenic 35.0%
! GGAATTTTATGGAAGAGACA+GGG - Chr1:2006860-2006879 MsG0180000146.01.T01:intron 35.0%
! TACCCTGAATTTTACAAAGG+CGG + Chr1:2007548-2007567 None:intergenic 35.0%
! TAGGTAATACATGTTGGTTG+TGG + Chr1:2004937-2004956 None:intergenic 35.0%
! TCCCTAATATGGTTTGGATT+TGG - Chr1:2001253-2001272 MsG0180000146.01.T01:intron 35.0%
! TGACTAACCCCTACAATTTT+AGG + Chr1:2001339-2001358 None:intergenic 35.0%
! TGTCGTGAGTTTAATTTCAG+TGG - Chr1:2000932-2000951 MsG0180000146.01.T01:CDS 35.0%
! TTGGTGTTCAGATCAAAGAT+GGG - Chr1:2006960-2006979 MsG0180000146.01.T01:intron 35.0%
! TTTTCCCTTGAAGGTTGTTT+GGG + Chr1:2008004-2008023 None:intergenic 35.0%
! TTTTTCCCTTGAAGGTTGTT+TGG + Chr1:2008005-2008024 None:intergenic 35.0%
!! ATCAATCCTTTAAGGTGAAG+AGG - Chr1:2001794-2001813 MsG0180000146.01.T01:intron 35.0%
!! ATCGACTCATAGCAAAGTTT+TGG + Chr1:2004761-2004780 None:intergenic 35.0%
!! CTGACTTGACTGCTTTTATA+CGG - Chr1:2007871-2007890 MsG0180000146.01.T01:intron 35.0%
!! GCATTTTAATGGGAGATTGT+TGG + Chr1:2002257-2002276 None:intergenic 35.0%
!! TCAATCCTTTAAGGTGAAGA+GGG - Chr1:2001795-2001814 MsG0180000146.01.T01:intron 35.0%
!! TCACATCATTTTTCCCTTGA+AGG + Chr1:2008013-2008032 None:intergenic 35.0%
!!! AAAGACTCGTGTTGATTTTG+CGG + Chr1:2005007-2005026 None:intergenic 35.0%
!!! AAGTTTTGGAGGAAATTGTG+AGG + Chr1:2004747-2004766 None:intergenic 35.0%
!!! ACTTTGAAACGGTCTGTTTT+TGG - Chr1:1999646-1999665 MsG0180000146.01.T01:intron 35.0%
!!! CTTTGAAACGGTCTGTTTTT+GGG - Chr1:1999647-1999666 MsG0180000146.01.T01:intron 35.0%
AAACAGGGCCTAATACTAGA+TGG + Chr1:2006238-2006257 None:intergenic 40.0%
AAACCTTCCTCATCCAAACT+TGG - Chr1:2008148-2008167 MsG0180000146.01.T01:intron 40.0%
AAACTGACAGATCACCTTCT+AGG - Chr1:2003579-2003598 MsG0180000146.01.T01:intron 40.0%
AAAGTGGATGACACCATAGA+TGG - Chr1:2002999-2003018 MsG0180000146.01.T01:intron 40.0%
AAATGCCGAAATTGCAAGGT+CGG - Chr1:2000873-2000892 MsG0180000146.01.T01:CDS 40.0%
AACAACCAGATTGAAGGTAG+TGG + Chr1:2007680-2007699 None:intergenic 40.0%
AACCTTCCTCATCCAAACTT+GGG - Chr1:2008149-2008168 MsG0180000146.01.T01:intron 40.0%
AACTGACAGATCACCTTCTA+GGG - Chr1:2003580-2003599 MsG0180000146.01.T01:intron 40.0%
AGAAACATAAGGACATCCAC+TGG + Chr1:2007905-2007924 None:intergenic 40.0%
AGAAATGGAAGGGGAATATG+GGG - Chr1:1999453-1999472 MsG0180000146.01.T01:intron 40.0%
AGAGAAATGGAAGGGGAATA+TGG - Chr1:1999451-1999470 MsG0180000146.01.T01:intron 40.0%
AGCCAGCATATTTCCTGAAA+TGG + Chr1:2007932-2007951 None:intergenic 40.0%
AGCGTGAATTAGATTTCCAG+TGG - Chr1:1999519-1999538 MsG0180000146.01.T01:three_prime_UTR 40.0%
AGTTCCAATACCCAGTTTGT+TGG - Chr1:2008294-2008313 MsG0180000146.01.T01:intron 40.0%
ATAATACGATGTGGTCGTGT+TGG + Chr1:2004973-2004992 None:intergenic 40.0%
ATAGACCCTCTTCACCTTAA+AGG + Chr1:2001803-2001822 None:intergenic 40.0%
ATCACCAACAAACTGGGTAT+TGG + Chr1:2008301-2008320 None:intergenic 40.0%
ATCAGTGAGCTAACAAGCAA+AGG + Chr1:2002770-2002789 None:intergenic 40.0%
ATCTAAAGGGATTCGAAACC+AGG - Chr1:1999164-1999183 MsG0180000146.01.T01:three_prime_UTR 40.0%
ATCTAGTATTAGGCCCTGTT+TGG - Chr1:2006237-2006256 MsG0180000146.01.T01:intron 40.0%
ATTATTGTGCTGCAGAATCC+GGG - Chr1:2006815-2006834 MsG0180000146.01.T01:intron 40.0%
CAAACCATATTAGGGAGCTT+TGG + Chr1:2001249-2001268 None:intergenic 40.0%
CAAAGCTCCCTAATATGGTT+TGG - Chr1:2001247-2001266 MsG0180000146.01.T01:intron 40.0%
CACCGCCTTTGTAAAATTCA+GGG - Chr1:2007543-2007562 MsG0180000146.01.T01:intron 40.0%
CAGATTTCGATTGTGCGATT+TGG - Chr1:2004672-2004691 MsG0180000146.01.T01:intron 40.0%
CATCACTAGATTTCGGAATC+CGG + Chr1:1999131-1999150 None:intergenic 40.0%
CCAAGGACATGCACATATAT+GGG + Chr1:2002337-2002356 None:intergenic 40.0%
CTCATTCATGCTTTCTTCTC+TGG - Chr1:2007801-2007820 MsG0180000146.01.T01:intron 40.0%
GAATTAGATTTCCAGTGGAG+AGG - Chr1:1999524-1999543 MsG0180000146.01.T01:three_prime_UTR 40.0%
GACTGTCTATGAGACAAGAT+TGG - Chr1:2002448-2002467 MsG0180000146.01.T01:intron 40.0%
GAGAAATGGAAGGGGAATAT+GGG - Chr1:1999452-1999471 MsG0180000146.01.T01:intron 40.0%
GAGAAGCAACTTTCTGTTAC+TGG - Chr1:2007264-2007283 MsG0180000146.01.T01:intron 40.0%
GATCTTCATCACCAACAAAC+TGG + Chr1:2008308-2008327 None:intergenic 40.0%
GCACATATATGGGACATCAT+AGG + Chr1:2002327-2002346 None:intergenic 40.0%
GCGACAAAAGTAGAAATTCG+CGG + Chr1:2003797-2003816 None:intergenic 40.0%
GCTTTAACTGGAGCTGAATT+TGG - Chr1:2002665-2002684 MsG0180000146.01.T01:intron 40.0%
GGTAGTGACATAATCCGTAT+CGG + Chr1:2003282-2003301 None:intergenic 40.0%
GTATTGCAATCCTTACACCA+AGG - Chr1:2008498-2008517 MsG0180000146.01.T01:intron 40.0%
GTGAGGAATATGCTACAAAG+GGG + Chr1:2004730-2004749 None:intergenic 40.0%
GTTCCAAAGACGAATCAACT+TGG - Chr1:2006941-2006960 MsG0180000146.01.T01:intron 40.0%
TAGCAAATGCCGAAATTGCA+AGG - Chr1:2000869-2000888 MsG0180000146.01.T01:CDS 40.0%
TAGTTACGGTAGACCATCTA+TGG + Chr1:2003015-2003034 None:intergenic 40.0%
TCATCAGCAGGTAAATTTGC+TGG - Chr1:2002734-2002753 MsG0180000146.01.T01:intron 40.0%
TCCAAGGACATGCACATATA+TGG + Chr1:2002338-2002357 None:intergenic 40.0%
TCTAAAGGGATTCGAAACCA+GGG - Chr1:1999165-1999184 MsG0180000146.01.T01:three_prime_UTR 40.0%
TCTCTTCACAACATTACCCT+CGG - Chr1:2005773-2005792 MsG0180000146.01.T01:intron 40.0%
TGTTGTTACTGTGGTAAGCT+TGG - Chr1:1999811-1999830 MsG0180000146.01.T01:three_prime_UTR 40.0%
TTAAACTCACGACAACTGTG+AGG + Chr1:2000926-2000945 None:intergenic 40.0%
TTATACGGCTATACTACCAG+TGG - Chr1:2007886-2007905 MsG0180000146.01.T01:intron 40.0%
TTCCTGAAAAACTTGCCAGA+AGG - Chr1:2005055-2005074 MsG0180000146.01.T01:intron 40.0%
! ACAGTGACATGTCATTTCAG+TGG + Chr1:2005423-2005442 None:intergenic 40.0%
! ATTCACTGTTTTCCGTGATC+AGG - Chr1:2006994-2007013 MsG0180000146.01.T01:intron 40.0%
! ATTTACGTACTGATCCACGA+TGG - Chr1:2003371-2003390 MsG0180000146.01.T01:intron 40.0%
! ATTTTATGGAAGAGACAGGG+AGG - Chr1:2006863-2006882 MsG0180000146.01.T01:intron 40.0%
! CAGTGACATGTCATTTCAGT+GGG + Chr1:2005422-2005441 None:intergenic 40.0%
! CGCATGATGACGTTGTTATT+TGG - Chr1:2003814-2003833 MsG0180000146.01.T01:intron 40.0%
! CTAACCCCTACAATTTTAGG+AGG + Chr1:2001336-2001355 None:intergenic 40.0%
! CTGCAGTTAATAGGCCATTT+TGG - Chr1:2008190-2008209 MsG0180000146.01.T01:intron 40.0%
! GAGAAGTTGATCTAAACGGT+TGG - Chr1:2007298-2007317 MsG0180000146.01.T01:intron 40.0%
! GATGGTGCCTTATATTTTCG+TGG - Chr1:2002597-2002616 MsG0180000146.01.T01:intron 40.0%
! TCCAGTTAAAGCACCAAAGT+TGG + Chr1:2002657-2002676 None:intergenic 40.0%
! TGAAACACTCAGAGCTTGTT+TGG + Chr1:2006649-2006668 None:intergenic 40.0%
! TGGGGAGAAGTTGATCTAAA+CGG - Chr1:2007294-2007313 MsG0180000146.01.T01:intron 40.0%
! TGGTTCAAAGCAAGCTTTTG+AGG - Chr1:2007960-2007979 MsG0180000146.01.T01:intron 40.0%
! TGTTGATAAGGCGGACATAA+CGG - Chr1:2006901-2006920 MsG0180000146.01.T01:intron 40.0%
!! AATATGCTGGCTTTCATGGT+TGG - Chr1:2007940-2007959 MsG0180000146.01.T01:intron 40.0%
!! ACAAACTGGGTATTGGAACT+TGG + Chr1:2008294-2008313 None:intergenic 40.0%
!! ACACCAAGTTGATTCGTCTT+TGG + Chr1:2006947-2006966 None:intergenic 40.0%
!! ACCAACAAAAGCACCAAAGT+TGG + Chr1:2002693-2002712 None:intergenic 40.0%
!! AGGAAATATGCTGGCTTTCA+TGG - Chr1:2007936-2007955 MsG0180000146.01.T01:intron 40.0%
!! CTTGGTGTTCAGATCAAAGA+TGG - Chr1:2006959-2006978 MsG0180000146.01.T01:intron 40.0%
!! GACTCATAGCAAAGTTTTGG+AGG + Chr1:2004758-2004777 None:intergenic 40.0%
!! TAAGCTTGGTGTGTCTATAG+AGG - Chr1:1999825-1999844 MsG0180000146.01.T01:intron 40.0%
!!! AAGACTCGTGTTGATTTTGC+GGG + Chr1:2005006-2005025 None:intergenic 40.0%
!!! GCCGCTTTTGGTATGATTTT+AGG + Chr1:2005284-2005303 None:intergenic 40.0%
!!! GGGTTCTTTTTTTTCAGGGT+GGG - Chr1:2007746-2007765 MsG0180000146.01.T01:intron 40.0%
!!! GGTCTGTTTTTGGGTTAGTT+CGG - Chr1:1999656-1999675 MsG0180000146.01.T01:intron 40.0%
!!! GGTTCTTTTTTTTCAGGGTG+GGG - Chr1:2007747-2007766 MsG0180000146.01.T01:intron 40.0%
!!! TGGGTTCTTTTTTTTCAGGG+TGG - Chr1:2007745-2007764 MsG0180000146.01.T01:intron 40.0%
!!! TTGTCATTTTTGCGGCTTCA+GGG - Chr1:2008670-2008689 MsG0180000146.01.T01:CDS 40.0%
!!! TTTTTTTTCAGGGTGGGGAT+GGG - Chr1:2007752-2007771 MsG0180000146.01.T01:intron 40.0%
AAACGTTCCAGAGCTTGCAT+CGG + Chr1:1999088-1999107 None:intergenic 45.0%
AACACCTTCGGAGTAACTGT+TGG - Chr1:2007240-2007259 MsG0180000146.01.T01:intron 45.0%
AACGAAACACAAGCCGAAAC+CGG + Chr1:1999711-1999730 None:intergenic 45.0%
AACTAACTCGAACCCGGTTT+CGG - Chr1:1999695-1999714 MsG0180000146.01.T01:intron 45.0%
AAGCACCACTACCTTCAATC+TGG - Chr1:2007672-2007691 MsG0180000146.01.T01:intron 45.0%
ACACCTTCGGAGTAACTGTT+GGG - Chr1:2007241-2007260 MsG0180000146.01.T01:intron 45.0%
ACCACAGTAACAACACCCTA+AGG + Chr1:1999806-1999825 None:intergenic 45.0%
AGAGAGAGAGAGAGAGCTTA+CGG + Chr1:2005813-2005832 None:intergenic 45.0%
AGAGGAAATGGTGAAGGTTG+AGG + Chr1:2005867-2005886 None:intergenic 45.0%
AGTAAAATGCTTCCACCACG+TGG + Chr1:1999629-1999648 None:intergenic 45.0%
AGTCAGCAAAGCCGTAATGA+AGG + Chr1:2004497-2004516 None:intergenic 45.0%
AGTTGTATAGTGGTCCATCG+TGG + Chr1:2003388-2003407 None:intergenic 45.0%
ATGGCAGCATCATGAAGACA+TGG - Chr1:2007439-2007458 MsG0180000146.01.T01:intron 45.0%
ATGTCACTACCTTAGTCGTG+AGG - Chr1:2003291-2003310 MsG0180000146.01.T01:intron 45.0%
ATGTCTTCCTCTTCATCAGC+AGG - Chr1:2002722-2002741 MsG0180000146.01.T01:intron 45.0%
CAAAATCCAGTACAGCAGTG+TGG - Chr1:2008708-2008727 MsG0180000146.01.T01:CDS 45.0%
CATGTGATTGTCGGTGAACA+TGG + Chr1:2005319-2005338 None:intergenic 45.0%
CCCATATATGTGCATGTCCT+TGG - Chr1:2002334-2002353 MsG0180000146.01.T01:intron 45.0%
CTTCGTTTCTCTCAAGGACT+TGG + Chr1:1999574-1999593 None:intergenic 45.0%
CTTGCTGAAGTTCGTCTCTT+CGG + Chr1:1999242-1999261 None:intergenic 45.0%
GACACAATCGAACAGAAGCA+TGG + Chr1:2008579-2008598 None:intergenic 45.0%
GCACCGCCTTTGTAAAATTC+AGG - Chr1:2007542-2007561 MsG0180000146.01.T01:intron 45.0%
GGGTGTTTCTTCAACCAAAC+AGG + Chr1:2004200-2004219 None:intergenic 45.0%
GTCTCCCAAACAACCTTCAA+GGG - Chr1:2007997-2008016 MsG0180000146.01.T01:intron 45.0%
TAGATTTCCAGTGGAGAGGT+CGG - Chr1:1999528-1999547 MsG0180000146.01.T01:three_prime_UTR 45.0%
TCCTTGAGAGAAACGAAGTG+CGG - Chr1:1999576-1999595 MsG0180000146.01.T01:intron 45.0%
TGACACAACTGGAGCAAATG+AGG - Chr1:2008052-2008071 MsG0180000146.01.T01:intron 45.0%
TGACGAATCCTTGGCTGATT+GGG + Chr1:2003952-2003971 None:intergenic 45.0%
TGCAGTCTTTCCCTTTATGG+TGG - Chr1:2007833-2007852 MsG0180000146.01.T01:intron 45.0%
TGCTTTAGCTGGAGCTGAAT+TGG - Chr1:2002629-2002648 MsG0180000146.01.T01:intron 45.0%
TGGTGTAGCATCACTTGTGA+TGG + Chr1:2004531-2004550 None:intergenic 45.0%
TGGTTGCGATCATACTCCTA+AGG - Chr1:2001858-2001877 MsG0180000146.01.T01:intron 45.0%
TGTCTCCCAAACAACCTTCA+AGG - Chr1:2007996-2008015 MsG0180000146.01.T01:intron 45.0%
TGTGATGTTGGAGTTTCACG+TGG - Chr1:2008028-2008047 MsG0180000146.01.T01:intron 45.0%
TTATTGTGCTGCAGAATCCG+GGG - Chr1:2006816-2006835 MsG0180000146.01.T01:intron 45.0%
TTCAAGCCCAAGTTTGGATG+AGG + Chr1:2008158-2008177 None:intergenic 45.0%
TTCTGTTACTGGGCGCAATT+GGG - Chr1:2007275-2007294 MsG0180000146.01.T01:intron 45.0%
TTCTTCCCACATCTCGAGAT+AGG - Chr1:2002104-2002123 MsG0180000146.01.T01:CDS 45.0%
TTGTTGAACCCAATCAGCCA+AGG - Chr1:2003941-2003960 MsG0180000146.01.T01:CDS 45.0%
TTTATGGGAGCCTAAAGCGA+GGG + Chr1:2003632-2003651 None:intergenic 45.0%
TTTCACGTGGATGACACAAC+TGG - Chr1:2008041-2008060 MsG0180000146.01.T01:intron 45.0%
TTTCTGTTACTGGGCGCAAT+TGG - Chr1:2007274-2007293 MsG0180000146.01.T01:intron 45.0%
TTTGTCTCTGCACACTGAGA+GGG + Chr1:2005696-2005715 None:intergenic 45.0%
! AAACCGGGTTCGAGTTAGTT+GGG + Chr1:1999695-1999714 None:intergenic 45.0%
! ATGGGGTTTGCTTCTCAAAC+AGG - Chr1:2007770-2007789 MsG0180000146.01.T01:intron 45.0%
! CACTCAGAGCTTGTTTGGAT+TGG + Chr1:2006644-2006663 None:intergenic 45.0%
! GACCTTCTGGCAAGTTTTTC+AGG + Chr1:2005060-2005079 None:intergenic 45.0%
! GATGATGCTCAGAGTGCTTT+AGG + Chr1:2004012-2004031 None:intergenic 45.0%
! GTTGATAAGGCGGACATAAC+GGG - Chr1:2006902-2006921 MsG0180000146.01.T01:intron 45.0%
! TACATGTTGGTTGTGGGAGT+AGG + Chr1:2004930-2004949 None:intergenic 45.0%
! TTTTATGGGAGCCTAAAGCG+AGG + Chr1:2003633-2003652 None:intergenic 45.0%
!! AGCTGAATTGGTGCCAACTT+TGG - Chr1:2002641-2002660 MsG0180000146.01.T01:intron 45.0%
!! ATTTTCAGGATCCGATCCAG+AGG - Chr1:2003839-2003858 MsG0180000146.01.T01:intron 45.0%
!! GCCAACTTTGGTGCTTTAAC+TGG - Chr1:2002653-2002672 MsG0180000146.01.T01:intron 45.0%
!! GCTGAATTTGGTGCCAACTT+TGG - Chr1:2002677-2002696 MsG0180000146.01.T01:intron 45.0%
!! GGGTATTGGAACTTGGTACA+TGG + Chr1:2008287-2008306 None:intergenic 45.0%
!! TCAGCAGGTAAATTTGCTGG+TGG - Chr1:2002737-2002756 MsG0180000146.01.T01:intron 45.0%
!!! AGACTCGTGTTGATTTTGCG+GGG + Chr1:2005005-2005024 None:intergenic 45.0%
!!! CAGTTACTCCGAAGGTGTTT+TGG + Chr1:2007239-2007258 None:intergenic 45.0%
!!! CTTGTCATTTTTGCGGCTTC+AGG - Chr1:2008669-2008688 MsG0180000146.01.T01:CDS 45.0%
!!! CTTTTTTTTCAGGGTGGGGA+TGG - Chr1:2007751-2007770 MsG0180000146.01.T01:intron 45.0%
!!! GCCAACTTTGGTGCTTTTGT+TGG - Chr1:2002689-2002708 MsG0180000146.01.T01:intron 45.0%
!!! GGGCGCGATTTTTGTTTTCT+TGG + Chr1:2002015-2002034 None:intergenic 45.0%
!!! TTTTTTTCAGGGTGGGGATG+GGG - Chr1:2007753-2007772 MsG0180000146.01.T01:intron 45.0%
!! TAATTACAATAATAAAAATA+GGG + Chr1:2005986-2006005 None:intergenic 5.0%
!! TTAATTACAATAATAAAAAT+AGG + Chr1:2005987-2006006 None:intergenic 5.0%
!!! AAAACAATATAATTTTTATA+TGG + Chr1:1999975-1999994 None:intergenic 5.0%
!!! AAATAATATGTATTTTTATA+TGG + Chr1:2000552-2000571 None:intergenic 5.0%
!!! ATTTTTAAATAATAGTTTTA+CGG + Chr1:2003093-2003112 None:intergenic 5.0%
!!! TATATATATATATATAGTTT+TGG - Chr1:2008075-2008094 MsG0180000146.01.T01:intron 5.0%
!!! TTATTTTATTTAATCAATTA+TGG + Chr1:2002229-2002248 None:intergenic 5.0%
!!! TTATTTTTTTAATACAAAAA+GGG + Chr1:2005498-2005517 None:intergenic 5.0%
!!! TTTATTTTTTTAATACAAAA+AGG + Chr1:2005499-2005518 None:intergenic 5.0%
AAAGGGATTCGAAACCAGGG+AGG - Chr1:1999168-1999187 MsG0180000146.01.T01:three_prime_UTR 50.0%
AACGGGCGTAACATGGATGA+AGG - Chr1:2006919-2006938 MsG0180000146.01.T01:intron 50.0%
AAGGCCGTGTGAAGCACAAA+GGG - Chr1:1999376-1999395 MsG0180000146.01.T01:three_prime_UTR 50.0%
AATGGAAGGGGAATATGGGG+CGG - Chr1:1999456-1999475 MsG0180000146.01.T01:intron 50.0%
ACAAACTCACCTGAGCAGGA+GGG + Chr1:2008332-2008351 None:intergenic 50.0%
ACAGACAAACTCACCTGAGC+AGG + Chr1:2008336-2008355 None:intergenic 50.0%
ACCGCACTTCGTTTCTCTCA+AGG + Chr1:1999580-1999599 None:intergenic 50.0%
ACGAAACACAAGCCGAAACC+GGG + Chr1:1999710-1999729 None:intergenic 50.0%
ACGTCTTCTCTTGTGACGTG+GGG + Chr1:2002041-2002060 None:intergenic 50.0%
AGAGAAACGAAGTGCGGTGT+TGG - Chr1:1999582-1999601 MsG0180000146.01.T01:intron 50.0%
AGCCCAAGTTTGGATGAGGA+AGG + Chr1:2008154-2008173 None:intergenic 50.0%
AGGAAGGCGAGAGAGAGAAA+TGG - Chr1:1999438-1999457 MsG0180000146.01.T01:intron 50.0%
AGGCGAGAGAGAGAAATGGA+AGG - Chr1:1999442-1999461 MsG0180000146.01.T01:intron 50.0%
AGGTCGGATTTAGCGACGAT+TGG - Chr1:1999544-1999563 MsG0180000146.01.T01:three_prime_UTR 50.0%
CACCTTCGGAGTAACTGTTG+GGG - Chr1:2007242-2007261 MsG0180000146.01.T01:intron 50.0%
CACGTCTTCTCTTGTGACGT+GGG + Chr1:2002042-2002061 None:intergenic 50.0%
CTCACGATGTGGGAGCTAAA+AGG + Chr1:2002082-2002101 None:intergenic 50.0%
CTCTGCCTATCTCGAGATGT+GGG + Chr1:2002112-2002131 None:intergenic 50.0%
CTGACGAATCCTTGGCTGAT+TGG + Chr1:2003953-2003972 None:intergenic 50.0%
CTTCACAACATTACCCTCGG+CGG - Chr1:2005776-2005795 MsG0180000146.01.T01:intron 50.0%
CTTTGTCTCTGCACACTGAG+AGG + Chr1:2005697-2005716 None:intergenic 50.0%
GAACCCAACTAACTCGAACC+CGG - Chr1:1999689-1999708 MsG0180000146.01.T01:intron 50.0%
GAAGAGGAAATTGAGGTCGC+CGG - Chr1:1999480-1999499 MsG0180000146.01.T01:intron 50.0%
GAAGCACAAAGGGAAGCAAG+TGG - Chr1:1999386-1999405 MsG0180000146.01.T01:three_prime_UTR 50.0%
GACGGAGAACTACCTGATCA+CGG + Chr1:2007009-2007028 None:intergenic 50.0%
GACGTCCGACCTTGCAATTT+CGG + Chr1:2000881-2000900 None:intergenic 50.0%
GCATTGGGAGAATGTGCTTG+AGG - Chr1:2002567-2002586 MsG0180000146.01.T01:intron 50.0%
GCCACTAAAACCCTCGCTTT+AGG - Chr1:2003619-2003638 MsG0180000146.01.T01:intron 50.0%
GCGAGAGAGAGAAATGGAAG+GGG - Chr1:1999444-1999463 MsG0180000146.01.T01:intron 50.0%
GCTTCCCTTTGTGCTTCACA+CGG + Chr1:1999383-1999402 None:intergenic 50.0%
GGAAGTTCAGGTGCTTTAGC+TGG - Chr1:2002618-2002637 MsG0180000146.01.T01:intron 50.0%
GGCCGGTAGGTAATACATGT+TGG + Chr1:2004943-2004962 None:intergenic 50.0%
GGCGAGAGAGAGAAATGGAA+GGG - Chr1:1999443-1999462 MsG0180000146.01.T01:intron 50.0%
GGGAAGAAAGCTCACGATGT+GGG + Chr1:2002092-2002111 None:intergenic 50.0%
GGTCGGTCGATAATACGATG+TGG + Chr1:2004982-2005001 None:intergenic 50.0%
GTCTCATTCGTGAGGTCAAG+AGG - Chr1:2003770-2003789 MsG0180000146.01.T01:intron 50.0%
TAGGAGAGCTTCTGTCCAAC+AGG + Chr1:2003993-2004012 None:intergenic 50.0%
TCACGACAACTGTGAGGTCT+CGG + Chr1:2000920-2000939 None:intergenic 50.0%
TCACGTCTTCTCTTGTGACG+TGG + Chr1:2002043-2002062 None:intergenic 50.0%
TCTATGGCTGATGTTGGTGC+TGG - Chr1:2008446-2008465 MsG0180000146.01.T01:intron 50.0%
TCTCTTTCTCGCCACCATGA+CGG - Chr1:2005743-2005762 MsG0180000146.01.T01:intron 50.0%
TCTGTTACTGGGCGCAATTG+GGG - Chr1:2007276-2007295 MsG0180000146.01.T01:intron 50.0%
TCTTCTCGTCCTCACGACTA+AGG + Chr1:2003303-2003322 None:intergenic 50.0%
TGGGAAGAAAGCTCACGATG+TGG + Chr1:2002093-2002112 None:intergenic 50.0%
TTATGGAAGAGACAGGGAGG+TGG - Chr1:2006866-2006885 MsG0180000146.01.T01:intron 50.0%
TTCACGGTCAGCGTAAACCA+CGG + Chr1:1999311-1999330 None:intergenic 50.0%
TTGACCTCACGAATGAGACG+TGG + Chr1:2003769-2003788 None:intergenic 50.0%
TTGTACAGTGATCCGTCCTC+TGG + Chr1:2003858-2003877 None:intergenic 50.0%
! AGTAAGGGGGGCATAAAGCA+AGG + Chr1:2003722-2003741 None:intergenic 50.0%
! ATTTTTGCGGCTTCAGGGAC+AGG - Chr1:2008675-2008694 MsG0180000146.01.T01:CDS 50.0%
! GAAACCGGGTTCGAGTTAGT+TGG + Chr1:1999696-1999715 None:intergenic 50.0%
!! AAGCTCTGGAACGTTTGCGT+TGG - Chr1:1999092-1999111 MsG0180000146.01.T01:three_prime_UTR 50.0%
!! ATCGTCGACTTCAACTGCGA+TGG - Chr1:1999343-1999362 MsG0180000146.01.T01:three_prime_UTR 50.0%
!! GCCTAAAGCGAGGGTTTTAG+TGG + Chr1:2003623-2003642 None:intergenic 50.0%
!! GCCTTAGGGTGTTGTTACTG+TGG - Chr1:1999802-1999821 MsG0180000146.01.T01:three_prime_UTR 50.0%
!! GGTTTTAGTGGCCTTACCCT+CGG + Chr1:2003611-2003630 None:intergenic 50.0%
!! GTTTTAGTGGCCTTACCCTC+GGG + Chr1:2003610-2003629 None:intergenic 50.0%
!! TACGTGCAATGAGCCGCTTT+TGG + Chr1:2005296-2005315 None:intergenic 50.0%
!! TGTGGTCGTGTTGGTTCATG+AGG + Chr1:2004964-2004983 None:intergenic 50.0%
!!! ACTCGTGTTGATTTTGCGGG+GGG + Chr1:2005003-2005022 None:intergenic 50.0%
!!! GACTCGTGTTGATTTTGCGG+GGG + Chr1:2005004-2005023 None:intergenic 50.0%
AGAACGACGGGAGGAGATGA+TGG - Chr1:1999278-1999297 MsG0180000146.01.T01:intron 55.0%
AGCAAGTGGAGGCAGAGAAG+TGG - Chr1:1999400-1999419 MsG0180000146.01.T01:intron 55.0%
AGGCAGAGAAGTGGGAATGG+AGG - Chr1:1999409-1999428 MsG0180000146.01.T01:intron 55.0%
CAAGGCCGTGTGAAGCACAA+AGG - Chr1:1999375-1999394 MsG0180000146.01.T01:three_prime_UTR 55.0%
CACGACAACTGTGAGGTCTC+GGG + Chr1:2000919-2000938 None:intergenic 55.0%
CAGAGAAGTGGGAATGGAGG+CGG - Chr1:1999412-1999431 MsG0180000146.01.T01:intron 55.0%
CAGTGATCCGTCCTCTGGAT+CGG + Chr1:2003853-2003872 None:intergenic 55.0%
CCTCCCGTCGTTCTCGAAAA+CGG + Chr1:1999272-1999291 None:intergenic 55.0%
CGATGCAGAACTCGCCTTCA+CGG + Chr1:1999327-1999346 None:intergenic 55.0%
CGTTGGCATGGTCTAGTCTC+CGG - Chr1:1999109-1999128 MsG0180000146.01.T01:three_prime_UTR 55.0%
CTCACGAATGAGACGTGGCA+GGG + Chr1:2003764-2003783 None:intergenic 55.0%
CTCCCCAACAGTTACTCCGA+AGG + Chr1:2007247-2007266 None:intergenic 55.0%
GAAGAGATGACCGTCCGTCA+TGG + Chr1:2005760-2005779 None:intergenic 55.0%
GACAAACTCACCTGAGCAGG+AGG + Chr1:2008333-2008352 None:intergenic 55.0%
GCAAGTGGAGGCAGAGAAGT+GGG - Chr1:1999401-1999420 MsG0180000146.01.T01:intron 55.0%
GCACAAAGGGAAGCAAGTGG+AGG - Chr1:1999389-1999408 MsG0180000146.01.T01:three_prime_UTR 55.0%
GCTAAATCCGACCTCTCCAC+TGG + Chr1:1999538-1999557 None:intergenic 55.0%
GCTCTGCCTATCTCGAGATG+TGG + Chr1:2002113-2002132 None:intergenic 55.0%
GCTTCCACCACGTGGAATTC+TGG + Chr1:1999621-1999640 None:intergenic 55.0%
GCTTGGGGAGATGCTGCATT+GGG - Chr1:2002552-2002571 MsG0180000146.01.T01:intron 55.0%
GGAGAATGTGCTTGAGGTGC+AGG - Chr1:2002573-2002592 MsG0180000146.01.T01:intron 55.0%
GGGCGGAGAAGAGGAAATTG+AGG - Chr1:1999473-1999492 MsG0180000146.01.T01:intron 55.0%
GTGCTTGGCTGACGAATCCT+TGG + Chr1:2003961-2003980 None:intergenic 55.0%
GTGGTTTACGCTGACCGTGA+AGG - Chr1:1999310-1999329 MsG0180000146.01.T01:intron 55.0%
TCAGGATCCGATCCAGAGGA+CGG - Chr1:2003843-2003862 MsG0180000146.01.T01:intron 55.0%
TCTGTCCAACAGGCTGCTGA+GGG + Chr1:2003983-2004002 None:intergenic 55.0%
TGCACCAGAATTCCACGTGG+TGG - Chr1:1999614-1999633 MsG0180000146.01.T01:intron 55.0%
TGCTTGGGGAGATGCTGCAT+TGG - Chr1:2002551-2002570 MsG0180000146.01.T01:intron 55.0%
TGGAGGCAGAGAAGTGGGAA+TGG - Chr1:1999406-1999425 MsG0180000146.01.T01:intron 55.0%
TGTGCTTGAGGTGCAGGTGA+TGG - Chr1:2002579-2002598 MsG0180000146.01.T01:intron 55.0%
TTCAACTGCGATGGCGCGAA+CGG - Chr1:1999352-1999371 MsG0180000146.01.T01:three_prime_UTR 55.0%
TTCTGTCCAACAGGCTGCTG+AGG + Chr1:2003984-2004003 None:intergenic 55.0%
! CTGGAACGTTTGCGTTGGCA+TGG - Chr1:1999097-1999116 MsG0180000146.01.T01:three_prime_UTR 55.0%
! TTTCTCGCCACCATGACGGA+CGG - Chr1:2005747-2005766 MsG0180000146.01.T01:intron 55.0%
!! AAGTGCGGTGTTGGTTGCGT+CGG - Chr1:1999591-1999610 MsG0180000146.01.T01:intron 55.0%
!! ACGCCGTTTTCGAGAACGAC+GGG - Chr1:1999266-1999285 MsG0180000146.01.T01:intron 55.0%
!! ATGGCTGATGTTGGTGCTGG+AGG - Chr1:2008449-2008468 MsG0180000146.01.T01:intron 55.0%
!! CGGACATAACGGGCGTAACA+TGG - Chr1:2006912-2006931 MsG0180000146.01.T01:intron 55.0%
!! GACGCCGTTTTCGAGAACGA+CGG - Chr1:1999265-1999284 MsG0180000146.01.T01:intron 55.0%
!! GAGATGATGGAAGTGCACCG+TGG - Chr1:1999291-1999310 MsG0180000146.01.T01:intron 55.0%
!! GTCGTGTTGGTTCATGAGGC+CGG + Chr1:2004960-2004979 None:intergenic 55.0%
!! TGTTGGTTCATGAGGCCGGT+AGG + Chr1:2004956-2004975 None:intergenic 55.0%
!!! GTGTTGATTTTGCGGGGGGT+CGG + Chr1:2004999-2005018 None:intergenic 55.0%
AAGCACCCTCAGCAGCCTGT+TGG - Chr1:2003975-2003994 MsG0180000146.01.T01:intron 60.0%
AGTGGGAATGGAGGCGGTTG+AGG - Chr1:1999418-1999437 MsG0180000146.01.T01:intron 60.0%
CCAAACCTGCTGTTCCTCCC+TGG + Chr1:1999185-1999204 None:intergenic 60.0%
CCAGGGAGGAACAGCAGGTT+TGG - Chr1:1999182-1999201 MsG0180000146.01.T01:intron 60.0%
CCTCACGAATGAGACGTGGC+AGG + Chr1:2003765-2003784 None:intergenic 60.0%
CCTGCCACGTCTCATTCGTG+AGG - Chr1:2003762-2003781 MsG0180000146.01.T01:intron 60.0%
CGAAACCAGGGAGGAACAGC+AGG - Chr1:1999177-1999196 MsG0180000146.01.T01:intron 60.0%
CGGTGCACCAGAATTCCACG+TGG - Chr1:1999611-1999630 MsG0180000146.01.T01:intron 60.0%
CGTTCCAGAGCTTGCATCGG+CGG + Chr1:1999085-1999104 None:intergenic 60.0%
GAGATGACCGTCCGTCATGG+TGG + Chr1:2005757-2005776 None:intergenic 60.0%
GCTTCCTATCTCCTCCGCTC+CGG + Chr1:1999502-1999521 None:intergenic 60.0%
GGAAATTGAGGTCGCCGGAG+CGG - Chr1:1999485-1999504 MsG0180000146.01.T01:intron 60.0%
GGAATGGAGGCGGTTGAGGA+AGG - Chr1:1999422-1999441 MsG0180000146.01.T01:intron 60.0%
GGCGAACCACACTGCTGTAC+TGG + Chr1:2008717-2008736 None:intergenic 60.0%
GGGAATATGGGGCGGAGAAG+AGG - Chr1:1999464-1999483 MsG0180000146.01.T01:intron 60.0%
GTGAGGTCTCGGGTTCGAAC+CGG + Chr1:2000909-2000928 None:intergenic 60.0%
TCTCTTGTGACGTGGGGCGA+GGG + Chr1:2002035-2002054 None:intergenic 60.0%
TGAAGATCGCCCTCCTGCTC+AGG - Chr1:2008320-2008339 MsG0180000146.01.T01:intron 60.0%
TGAGGTCTCGGGTTCGAACC+GGG + Chr1:2000908-2000927 None:intergenic 60.0%
TTCACCGCCGATGCAAGCTC+TGG - Chr1:1999078-1999097 MsG0180000146.01.T01:three_prime_UTR 60.0%
TTCTCTTGTGACGTGGGGCG+AGG + Chr1:2002036-2002055 None:intergenic 60.0%
! TTAGTGGCCTTACCCTCGGG+CGG + Chr1:2003607-2003626 None:intergenic 60.0%
!! AACAGGCTGCTGAGGGTGCT+TGG + Chr1:2003976-2003995 None:intergenic 60.0%
!! CCGTTTTCGAGAACGACGGG+AGG - Chr1:1999269-1999288 MsG0180000146.01.T01:intron 60.0%
AACATTACCCTCGGCGGCCG+TGG - Chr1:2005782-2005801 MsG0180000146.01.T01:intron 65.0%
AATTGAGGTCGCCGGAGCGG+AGG - Chr1:1999488-1999507 MsG0180000146.01.T01:intron 65.0%
CAAGGTCGGACGTCGTGACC+CGG - Chr1:2000887-2000906 MsG0180000146.01.T01:CDS 65.0%
! TAGTGGCCTTACCCTCGGGC+GGG + Chr1:2003606-2003625 None:intergenic 65.0%
!! GAGAGCTTACGGTGCCGCCA+CGG + Chr1:2005802-2005821 None:intergenic 65.0%
ATTACCCTCGGCGGCCGTGG+CGG - Chr1:2005785-2005804 MsG0180000146.01.T01:intron 70.0%
CTGCGATGGCGCGAACGGCA+AGG - Chr1:1999357-1999376 MsG0180000146.01.T01:three_prime_UTR 70.0%
GTCGCCGGAGCGGAGGAGAT+AGG - Chr1:1999495-1999514 MsG0180000146.01.T01:intron 70.0%
!! ACCTTCTAGGGCCCGCCCGA+GGG - Chr1:2003592-2003611 MsG0180000146.01.T01:intron 70.0%
ACCCTCGGGCGGGCCCTAGA+AGG + Chr1:2003596-2003615 None:intergenic 75.0%
CTAGGGCCCGCCCGAGGGTA+AGG - Chr1:2003597-2003616 MsG0180000146.01.T01:intron 75.0%
!! CACCTTCTAGGGCCCGCCCG+AGG - Chr1:2003591-2003610 MsG0180000146.01.T01:intron 75.0%
!! GGTGCCGCCACGGCCGCCGA+GGG + Chr1:2005792-2005811 None:intergenic 85.0%
!!! CGGTGCCGCCACGGCCGCCG+AGG + Chr1:2005793-2005812 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
Chr1 gene 1999072 2008765 1999072 ID=MsG0180000146.01;Name=MsG0180000146.01
Chr1 mRNA 1999072 2008765 1999072 ID=MsG0180000146.01.T01;Parent=MsG0180000146.01;Name=MsG0180000146.01.T01;_AED=0.71;_eAED=0.86;_QI=0|0|0|0.63|0.6|0.63|11|378|321
Chr1 exon 2008639 2008765 2008639 ID=MsG0180000146.01.T01:exon:6865;Parent=MsG0180000146.01.T01
Chr1 exon 2006630 2006655 2006630 ID=MsG0180000146.01.T01:exon:6866;Parent=MsG0180000146.01.T01
Chr1 exon 2005958 2006149 2005958 ID=MsG0180000146.01.T01:exon:6867;Parent=MsG0180000146.01.T01
Chr1 exon 2003870 2003990 2003870 ID=MsG0180000146.01.T01:exon:6868;Parent=MsG0180000146.01.T01
Chr1 exon 2002026 2002135 2002026 ID=MsG0180000146.01.T01:exon:6869;Parent=MsG0180000146.01.T01
Chr1 exon 2000822 2001100 2000822 ID=MsG0180000146.01.T01:exon:6870;Parent=MsG0180000146.01.T01
Chr1 exon 2000518 2000627 2000518 ID=MsG0180000146.01.T01:exon:6871;Parent=MsG0180000146.01.T01
Chr1 exon 1999764 1999842 1999764 ID=MsG0180000146.01.T01:exon:6872;Parent=MsG0180000146.01.T01
Chr1 exon 1999496 1999579 1999496 ID=MsG0180000146.01.T01:exon:6873;Parent=MsG0180000146.01.T01
Chr1 exon 1999318 1999412 1999318 ID=MsG0180000146.01.T01:exon:6874;Parent=MsG0180000146.01.T01
Chr1 exon 1999072 1999192 1999072 ID=MsG0180000146.01.T01:exon:6875;Parent=MsG0180000146.01.T01
Chr1 CDS 2008639 2008765 2008639 ID=MsG0180000146.01.T01:cds;Parent=MsG0180000146.01.T01
Chr1 CDS 2006630 2006655 2006630 ID=MsG0180000146.01.T01:cds;Parent=MsG0180000146.01.T01
Chr1 CDS 2005958 2006149 2005958 ID=MsG0180000146.01.T01:cds;Parent=MsG0180000146.01.T01
Chr1 CDS 2003870 2003990 2003870 ID=MsG0180000146.01.T01:cds;Parent=MsG0180000146.01.T01
Chr1 CDS 2002026 2002135 2002026 ID=MsG0180000146.01.T01:cds;Parent=MsG0180000146.01.T01
Chr1 CDS 2000822 2001100 2000822 ID=MsG0180000146.01.T01:cds;Parent=MsG0180000146.01.T01
Chr1 CDS 2000518 2000627 2000518 ID=MsG0180000146.01.T01:cds;Parent=MsG0180000146.01.T01
Chr1 CDS 1999842 1999842 1999842 ID=MsG0180000146.01.T01:cds;Parent=MsG0180000146.01.T01
Chr1 three_prime_UTR 1999764 1999841 1999764 ID=MsG0180000146.01.T01:three_prime_utr;Parent=MsG0180000146.01.T01
Chr1 three_prime_UTR 1999496 1999579 1999496 ID=MsG0180000146.01.T01:three_prime_utr;Parent=MsG0180000146.01.T01
Chr1 three_prime_UTR 1999318 1999412 1999318 ID=MsG0180000146.01.T01:three_prime_utr;Parent=MsG0180000146.01.T01
Chr1 three_prime_UTR 1999072 1999192 1999072 ID=MsG0180000146.01.T01:three_prime_utr;Parent=MsG0180000146.01.T01
Gene Sequence

>MsG0180000146.01.T01

ATGTACTTCACCGCCGATGCAAGCTCTGGAACGTTTGCGTTGGCATGGTCTAGTCTCCGGATTCCGAAATCTAGTGATGAGTTAGATGATTCATCTAAAGGGATTCGAAACCAGGGAGGAACAGCAGAAGGTCAAGACAAGATTGGTGAACACATTGAAAACGGTGTTTCTTATCCTCTTGAACTTGAACTTGAACTTTTGGTTGGTAAGAAATTTCTCTTCAAGGTTGAAAAGAGTGATTCCTCATCTTCATCTTTGGATCAATCCTTTAAGGTGAAGAGGGTCTATGATGAATTAGAGATCATAAAGGCTTTTGTTGATTATGGTTGCGATCATACTCCTAAGGATCCGATCCAGAGGACGGATCACTGTACAACTTTTCTATTCAAGAATGTCTCAAAACTATATGAAAAAAATGGCACACATGGTCTTACTCTGCTTGTTGAACCCAATCAGCCAAGGATTCTGTGCAGAGACAAAGACAAAGTGTGTTTCGTAGCATCGTTCTCTCTTTCTCGCCACCATGACGGACGGTCATCTCTTCACAACATTACCCTCGGCGGCCGTGGCGGCACCATGAGGAAAATGAGATTTTCTAGTAAATTTGTGAGCGAGACTGAAATAGTAATTGTCATGTATTACACTTATATTTGTATTATTGTGCTGCAGAATCCGGGGCAGATAAAAATATATTCTGGAGGAATTTTATGGAAGAGACAGGGAGGTGGCAAATCAATTGATGTTGATAAGGCGGACATAACGGGCGTAACATGGATGAAGGTTCCAAAGACGAATCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGTTTTCCGTGATCAGGATGTTGTAAGCTTGACAAGTTTCTTCCAAAACACCTTCGGAGTAACTGTTGGGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGATCTAAACGGTTGA

Protein sequence

>MsG0180000146.01.T01

MYFTADASSGTFALAWSSLRIPKSSDELDDSSKGIRNQGGTAEGQDKIGEHIENGVSYPLELELELLVGKKFLFKVEKSDSSSSSLDQSFKVKRVYDELEIIKAFVDYGCDHTPKDPIQRTDHCTTFLFKNVSKLYEKNGTHGLTLLVEPNQPRILCRDKDKVCFVASFSLSRHHDGRSSLHNITLGGRGGTMRKMRFSSKFVSETEIVIVMYYTYICIIVLQNPGQIKIYSGGILWKRQGGGKSIDVDKADITGVTWMKVPKTNQLGVQIKDGLFYKFTVFRDQDVVSLTSFFQNTFGVTVGEKQLSVTGRNWGEVDLNG*