Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009758.01.T01 | XP_013464344.1 | 89.756 | 205 | 13 | 1 | 1 | 197 | 14 | 218 | 9.66E-121 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009758.01.T01 | P46417 | 76.355 | 203 | 39 | 1 | 1 | 194 | 14 | 216 | 1.11E-102 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009758.01.T01 | A0A072V8Q8 | 89.756 | 205 | 13 | 1 | 1 | 197 | 14 | 218 | 4.62e-121 | 350 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880047767.01 | MsG0280009758.01 | PPI |
| MsG0280009757.01 | MsG0280009758.01 | PPI |
| MsG0880047767.01 | MsG0280009758.01 | PPI |
| MsG0180004881.01 | MsG0280009758.01 | PPI |
| MsG0880047766.01 | MsG0280009758.01 | PPI |
| MsG0280009756.01 | MsG0280009758.01 | PPI |
| MsG0280009758.01 | MsG0880047766.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009758.01.T01 | MTR_2g070110 | 89.756 | 205 | 13 | 1 | 1 | 197 | 14 | 218 | 1.17e-124 | 350 |
| MsG0280009758.01.T01 | MTR_2g070060 | 83.495 | 206 | 25 | 1 | 1 | 197 | 14 | 219 | 7.08e-124 | 348 |
| MsG0280009758.01.T01 | MTR_2g070070 | 85.437 | 206 | 21 | 1 | 1 | 197 | 14 | 219 | 8.43e-121 | 341 |
| MsG0280009758.01.T01 | MTR_2g070180 | 63.500 | 200 | 64 | 1 | 2 | 192 | 15 | 214 | 2.45e-95 | 276 |
| MsG0280009758.01.T01 | MTR_2g070140 | 62.069 | 203 | 68 | 1 | 4 | 197 | 1 | 203 | 1.01e-94 | 274 |
| MsG0280009758.01.T01 | MTR_2g070150 | 64.737 | 190 | 58 | 1 | 2 | 182 | 15 | 204 | 3.71e-92 | 268 |
| MsG0280009758.01.T01 | MTR_8g056940 | 63.107 | 206 | 67 | 1 | 1 | 197 | 14 | 219 | 5.32e-91 | 265 |
| MsG0280009758.01.T01 | MTR_2g070130 | 58.537 | 205 | 76 | 1 | 2 | 197 | 15 | 219 | 2.40e-89 | 261 |
| MsG0280009758.01.T01 | MTR_4g124130 | 59.903 | 207 | 73 | 2 | 1 | 197 | 14 | 220 | 1.02e-86 | 254 |
| MsG0280009758.01.T01 | MTR_3g467420 | 57.073 | 205 | 79 | 1 | 2 | 197 | 20 | 224 | 1.87e-85 | 251 |
| MsG0280009758.01.T01 | MTR_2g070210 | 57.971 | 207 | 76 | 2 | 2 | 197 | 15 | 221 | 5.63e-85 | 250 |
| MsG0280009758.01.T01 | MTR_2g070200 | 57.282 | 206 | 77 | 2 | 2 | 196 | 15 | 220 | 5.75e-85 | 250 |
| MsG0280009758.01.T01 | MTR_3g467430 | 58.209 | 201 | 75 | 2 | 1 | 192 | 19 | 219 | 1.81e-82 | 244 |
| MsG0280009758.01.T01 | MTR_2g070120 | 56.021 | 191 | 75 | 1 | 2 | 183 | 15 | 205 | 7.01e-76 | 227 |
| MsG0280009758.01.T01 | MTR_5g076900 | 47.087 | 206 | 98 | 3 | 2 | 197 | 17 | 221 | 1.05e-60 | 189 |
| MsG0280009758.01.T01 | MTR_0186s0030 | 64.062 | 128 | 37 | 1 | 1 | 119 | 14 | 141 | 5.03e-52 | 164 |
| MsG0280009758.01.T01 | MTR_5g037380 | 40.758 | 211 | 107 | 3 | 2 | 194 | 16 | 226 | 1.18e-45 | 150 |
| MsG0280009758.01.T01 | MTR_5g040430 | 37.143 | 210 | 113 | 5 | 2 | 195 | 18 | 224 | 7.47e-42 | 140 |
| MsG0280009758.01.T01 | MTR_8g087410 | 41.026 | 195 | 101 | 4 | 3 | 184 | 18 | 211 | 3.54e-41 | 139 |
| MsG0280009758.01.T01 | MTR_1g090060 | 40.102 | 197 | 100 | 5 | 2 | 183 | 14 | 207 | 2.27e-40 | 137 |
| MsG0280009758.01.T01 | MTR_7g065750 | 38.863 | 211 | 107 | 6 | 2 | 192 | 18 | 226 | 7.28e-39 | 133 |
| MsG0280009758.01.T01 | MTR_7g065720 | 37.245 | 196 | 108 | 5 | 2 | 184 | 18 | 211 | 9.68e-39 | 133 |
| MsG0280009758.01.T01 | MTR_1g090070 | 39.698 | 199 | 97 | 5 | 2 | 182 | 20 | 213 | 5.66e-38 | 131 |
| MsG0280009758.01.T01 | MTR_8g087425 | 37.438 | 203 | 115 | 3 | 2 | 193 | 16 | 217 | 7.88e-38 | 130 |
| MsG0280009758.01.T01 | MTR_4g059730 | 40.513 | 195 | 102 | 5 | 2 | 183 | 15 | 208 | 8.70e-38 | 130 |
| MsG0280009758.01.T01 | MTR_8g061950 | 39.535 | 215 | 100 | 6 | 2 | 194 | 16 | 222 | 1.01e-37 | 130 |
| MsG0280009758.01.T01 | MTR_7g065660 | 38.462 | 195 | 106 | 5 | 2 | 184 | 18 | 210 | 2.85e-37 | 129 |
| MsG0280009758.01.T01 | MTR_1g090100 | 40.704 | 199 | 96 | 5 | 2 | 183 | 13 | 206 | 3.59e-37 | 129 |
| MsG0280009758.01.T01 | MTR_4g019780 | 36.082 | 194 | 112 | 3 | 2 | 184 | 19 | 211 | 4.24e-37 | 128 |
| MsG0280009758.01.T01 | MTR_6g080440 | 37.500 | 192 | 108 | 3 | 5 | 185 | 17 | 207 | 4.69e-37 | 128 |
| MsG0280009758.01.T01 | MTR_7g065630 | 37.436 | 195 | 104 | 5 | 2 | 184 | 36 | 224 | 1.85e-36 | 127 |
| MsG0280009758.01.T01 | MTR_3g099757 | 39.706 | 204 | 111 | 5 | 2 | 194 | 16 | 218 | 2.54e-36 | 126 |
| MsG0280009758.01.T01 | MTR_1g090150 | 40.741 | 189 | 99 | 4 | 2 | 178 | 14 | 201 | 4.23e-36 | 126 |
| MsG0280009758.01.T01 | MTR_4g019790 | 41.270 | 189 | 97 | 5 | 2 | 178 | 18 | 204 | 5.62e-36 | 125 |
| MsG0280009758.01.T01 | MTR_7g065740 | 37.441 | 211 | 110 | 7 | 2 | 192 | 18 | 226 | 2.12e-35 | 124 |
| MsG0280009758.01.T01 | MTR_7g065710 | 36.923 | 195 | 105 | 5 | 2 | 184 | 15 | 203 | 4.35e-35 | 123 |
| MsG0280009758.01.T01 | MTR_7g065265 | 40.212 | 189 | 99 | 5 | 2 | 178 | 18 | 204 | 1.17e-34 | 122 |
| MsG0280009758.01.T01 | MTR_1g090090 | 38.974 | 195 | 105 | 5 | 2 | 183 | 14 | 207 | 3.06e-34 | 121 |
| MsG0280009758.01.T01 | MTR_2g072120 | 88.333 | 60 | 7 | 0 | 34 | 93 | 1 | 60 | 3.31e-34 | 116 |
| MsG0280009758.01.T01 | MTR_7g065590 | 38.095 | 189 | 103 | 4 | 2 | 178 | 18 | 204 | 6.33e-34 | 120 |
| MsG0280009758.01.T01 | MTR_7g065640 | 36.702 | 188 | 101 | 5 | 2 | 184 | 18 | 192 | 2.33e-32 | 116 |
| MsG0280009758.01.T01 | MTR_7g065270 | 37.566 | 189 | 104 | 4 | 2 | 178 | 18 | 204 | 5.09e-32 | 115 |
| MsG0280009758.01.T01 | MTR_7g065290 | 38.095 | 189 | 103 | 4 | 2 | 178 | 18 | 204 | 6.65e-32 | 115 |
| MsG0280009758.01.T01 | MTR_1g115195 | 36.041 | 197 | 109 | 5 | 2 | 183 | 14 | 208 | 8.99e-32 | 115 |
| MsG0280009758.01.T01 | MTR_7g065600 | 37.563 | 197 | 102 | 6 | 1 | 178 | 10 | 204 | 6.57e-31 | 112 |
| MsG0280009758.01.T01 | MTR_7g065680 | 36.410 | 195 | 106 | 5 | 2 | 184 | 18 | 206 | 6.87e-31 | 112 |
| MsG0280009758.01.T01 | MTR_7g065230 | 39.894 | 188 | 96 | 6 | 2 | 178 | 18 | 199 | 1.02e-30 | 112 |
| MsG0280009758.01.T01 | MTR_7g065700 | 36.269 | 193 | 105 | 5 | 2 | 182 | 18 | 204 | 2.09e-28 | 106 |
| MsG0280009758.01.T01 | MTR_7g065260 | 36.548 | 197 | 104 | 6 | 1 | 178 | 17 | 211 | 6.39e-27 | 102 |
| MsG0280009758.01.T01 | MTR_4g043640 | 62.500 | 40 | 15 | 0 | 128 | 167 | 46 | 85 | 2.87e-13 | 63.2 |
| MsG0280009758.01.T01 | MTR_5g037390 | 40.476 | 84 | 48 | 1 | 15 | 96 | 11 | 94 | 9.25e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009758.01.T01 | AT1G17180 | 58.738 | 206 | 76 | 1 | 1 | 197 | 14 | 219 | 4.34e-89 | 261 |
| MsG0280009758.01.T01 | AT1G78380 | 61.194 | 201 | 69 | 1 | 1 | 192 | 14 | 214 | 3.06e-87 | 256 |
| MsG0280009758.01.T01 | AT1G78370 | 60.938 | 192 | 66 | 1 | 1 | 183 | 14 | 205 | 1.52e-85 | 251 |
| MsG0280009758.01.T01 | AT1G17170 | 57.767 | 206 | 77 | 2 | 1 | 197 | 14 | 218 | 1.34e-84 | 249 |
| MsG0280009758.01.T01 | AT1G78360 | 59.903 | 207 | 73 | 2 | 1 | 197 | 14 | 220 | 1.67e-84 | 249 |
| MsG0280009758.01.T01 | AT1G78340 | 59.686 | 191 | 68 | 1 | 2 | 183 | 15 | 205 | 1.35e-82 | 244 |
| MsG0280009758.01.T01 | AT1G78320 | 58.454 | 207 | 76 | 2 | 1 | 197 | 14 | 220 | 1.94e-82 | 244 |
| MsG0280009758.01.T01 | AT1G17190 | 55.882 | 204 | 81 | 1 | 1 | 195 | 15 | 218 | 9.09e-81 | 239 |
| MsG0280009758.01.T01 | AT1G53680 | 53.623 | 207 | 85 | 1 | 2 | 197 | 18 | 224 | 1.73e-80 | 239 |
| MsG0280009758.01.T01 | AT3G43800 | 50.239 | 209 | 91 | 4 | 1 | 196 | 15 | 223 | 1.80e-69 | 211 |
| MsG0280009758.01.T01 | AT1G78320 | 50.242 | 207 | 66 | 3 | 1 | 197 | 14 | 193 | 2.09e-63 | 194 |
| MsG0280009758.01.T01 | AT1G10360 | 41.500 | 200 | 100 | 5 | 1 | 183 | 15 | 214 | 2.02e-45 | 150 |
| MsG0280009758.01.T01 | AT3G09270 | 41.294 | 201 | 106 | 4 | 2 | 190 | 17 | 217 | 4.16e-43 | 144 |
| MsG0280009758.01.T01 | AT2G29420 | 40.526 | 190 | 101 | 4 | 2 | 180 | 20 | 208 | 1.62e-41 | 140 |
| MsG0280009758.01.T01 | AT1G10370 | 41.791 | 201 | 96 | 6 | 2 | 183 | 16 | 214 | 3.44e-41 | 139 |
| MsG0280009758.01.T01 | AT1G59700 | 40.099 | 202 | 103 | 4 | 2 | 185 | 17 | 218 | 2.19e-40 | 137 |
| MsG0280009758.01.T01 | AT1G27140 | 41.463 | 205 | 101 | 5 | 2 | 187 | 17 | 221 | 3.41e-40 | 137 |
| MsG0280009758.01.T01 | AT1G27130 | 40.000 | 200 | 102 | 5 | 2 | 183 | 17 | 216 | 4.10e-39 | 134 |
| MsG0280009758.01.T01 | AT2G29490 | 37.561 | 205 | 115 | 4 | 2 | 194 | 18 | 221 | 3.92e-38 | 131 |
| MsG0280009758.01.T01 | AT2G29480 | 38.835 | 206 | 108 | 7 | 2 | 194 | 18 | 218 | 6.98e-38 | 130 |
| MsG0280009758.01.T01 | AT1G74590 | 39.344 | 183 | 96 | 4 | 2 | 169 | 18 | 200 | 1.26e-37 | 130 |
| MsG0280009758.01.T01 | AT1G59670 | 41.414 | 198 | 98 | 5 | 4 | 183 | 19 | 216 | 1.75e-37 | 130 |
| MsG0280009758.01.T01 | AT2G29440 | 40.488 | 205 | 101 | 7 | 2 | 190 | 17 | 216 | 6.29e-37 | 128 |
| MsG0280009758.01.T01 | AT2G29450 | 41.624 | 197 | 87 | 8 | 2 | 178 | 17 | 205 | 1.29e-35 | 125 |
| MsG0280009758.01.T01 | AT2G29460 | 37.379 | 206 | 111 | 7 | 2 | 194 | 18 | 218 | 1.81e-35 | 124 |
| MsG0280009758.01.T01 | AT1G69930 | 38.384 | 198 | 106 | 4 | 2 | 183 | 23 | 220 | 3.20e-35 | 124 |
| MsG0280009758.01.T01 | AT1G69920 | 38.071 | 197 | 100 | 5 | 2 | 178 | 45 | 239 | 3.30e-35 | 124 |
| MsG0280009758.01.T01 | AT2G29470 | 37.019 | 208 | 112 | 8 | 2 | 195 | 18 | 220 | 3.94e-34 | 121 |
| MsG0280009758.01.T01 | AT5G62480 | 33.491 | 212 | 116 | 7 | 2 | 193 | 19 | 225 | 5.17e-32 | 116 |
| MsG0280009758.01.T01 | AT5G62480 | 27.830 | 212 | 102 | 8 | 2 | 193 | 19 | 199 | 2.00e-16 | 74.7 |
| MsG0280009758.01.T01 | AT5G62480 | 27.830 | 212 | 101 | 8 | 2 | 193 | 19 | 198 | 2.32e-16 | 74.3 |
Find 34 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTAAAACCAGCTGTAAAA+AGG | 0.236430 | 2:-57662687 | None:intergenic |
| GCTTGATTATATTGACAAAA+AGG | 0.245841 | 2:+57662029 | MsG0280009758.01.T01:CDS |
| ACGTTTGGATTTCTTGATAT+TGG | 0.276844 | 2:+57662657 | MsG0280009758.01.T01:CDS |
| CTGGGATCTTCTTGTGAATT+GGG | 0.295027 | 2:-57661879 | None:intergenic |
| ACTGGGATCTTCTTGTGAAT+TGG | 0.304684 | 2:-57661880 | None:intergenic |
| TGCAGTACATAGATGAAGTT+TGG | 0.332448 | 2:+57661947 | MsG0280009758.01.T01:CDS |
| GATACATGGTTTAGCATGTT+TGG | 0.342998 | 2:+57661760 | None:intergenic |
| GCATGTTTGGTATGAGGGTT+AGG | 0.343737 | 2:+57661773 | None:intergenic |
| TTGACCCAAGTCATGAGTTT+AGG | 0.351167 | 2:-57662750 | None:intergenic |
| TTTCCATTGTGGATAAGAAC+TGG | 0.366518 | 2:-57661898 | None:intergenic |
| AACGTAGCACCGCCATAAAA+AGG | 0.386993 | 2:-57662639 | None:intergenic |
| GGTTTAGCATGTTTGGTATG+AGG | 0.387485 | 2:+57661767 | None:intergenic |
| TCATACACCTTCTTCTCATC+AGG | 0.397779 | 2:-57662810 | None:intergenic |
| AGAGAGCTCAAGCTAGATTC+TGG | 0.444664 | 2:+57662007 | MsG0280009758.01.T01:CDS |
| GTTTAGCATGTTTGGTATGA+GGG | 0.448271 | 2:+57661768 | None:intergenic |
| AGGACAATGTAGCTTTCAAA+AGG | 0.449548 | 2:+57662543 | MsG0280009758.01.T01:intron |
| AACTCTTCCTGATGAGAAGA+AGG | 0.458010 | 2:+57662803 | MsG0280009758.01.T01:CDS |
| CTAGCTTGAGCTCTCTCATA+AGG | 0.462092 | 2:-57662000 | None:intergenic |
| TGGCAACTTTAAATTTGAAG+TGG | 0.517103 | 2:+57662722 | MsG0280009758.01.T01:CDS |
| GGAGCATGAGGAAAGAAAGA+AGG | 0.533036 | 2:+57662569 | MsG0280009758.01.T01:CDS |
| GGACAATGTAGCTTTCAAAA+GGG | 0.544680 | 2:+57662544 | MsG0280009758.01.T01:intron |
| AGTGTCCTAAACTCATGACT+TGG | 0.544683 | 2:+57662745 | MsG0280009758.01.T01:CDS |
| CAAGACACTAGAAGAAACCT+TGG | 0.557125 | 2:+57662608 | MsG0280009758.01.T01:CDS |
| TTCCATTGTGGATAAGAACT+GGG | 0.563471 | 2:-57661897 | None:intergenic |
| AAGACACTAGAAGAAACCTT+GGG | 0.566763 | 2:+57662609 | MsG0280009758.01.T01:CDS |
| AGCTCTCTCATAAGGATCAG+AGG | 0.588678 | 2:-57661992 | None:intergenic |
| GACAATGTAGCTTTCAAAAG+GGG | 0.605449 | 2:+57662545 | MsG0280009758.01.T01:intron |
| ATCCCAGTTCTTATCCACAA+TGG | 0.607984 | 2:+57661895 | MsG0280009758.01.T01:CDS |
| TTCAAAAGGGGAGGAGCATG+AGG | 0.609682 | 2:+57662557 | MsG0280009758.01.T01:CDS |
| GTGTCCTAAACTCATGACTT+GGG | 0.610120 | 2:+57662746 | MsG0280009758.01.T01:CDS |
| GCTCTCTCATAAGGATCAGA+GGG | 0.618631 | 2:-57661991 | None:intergenic |
| GTGAGCATGAAGAAAGCACT+TGG | 0.630117 | 2:+57662840 | MsG0280009758.01.T01:CDS |
| GACTTGGGTCAAGAGATGCA+TGG | 0.639170 | 2:+57662761 | MsG0280009758.01.T01:CDS |
| AATGTAGCTTTCAAAAGGGG+AGG | 0.641248 | 2:+57662548 | MsG0280009758.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAGGATGAAAATTAT+AGG | - | Chr2:57662075-57662094 | None:intergenic | 15.0% |
| !!! | ATAATTTTCATCCTTAATTT+TGG | + | Chr2:57662075-57662094 | MsG0280009758.01.T01:intron | 15.0% |
| !! | TTAAGCTGTTTATCAAAATA+AGG | + | Chr2:57662452-57662471 | MsG0280009758.01.T01:intron | 20.0% |
| !!! | CTATTATCAATTTTTTACTC+TGG | + | Chr2:57662147-57662166 | MsG0280009758.01.T01:intron | 20.0% |
| !!! | GAATTTTGAGATTGATTTTT+AGG | + | Chr2:57662111-57662130 | MsG0280009758.01.T01:intron | 20.0% |
| ! | CATTTACTTGTGAGATTATT+TGG | + | Chr2:57662239-57662258 | MsG0280009758.01.T01:intron | 25.0% |
| ! | GCTTGATTATATTGACAAAA+AGG | + | Chr2:57662029-57662048 | MsG0280009758.01.T01:CDS | 25.0% |
| !! | ATTTTCATCCTTAATTTTGG+TGG | + | Chr2:57662078-57662097 | MsG0280009758.01.T01:intron | 25.0% |
| !!! | TTTTACACTTTTGAGACTTA+TGG | + | Chr2:57662702-57662721 | MsG0280009758.01.T01:CDS | 25.0% |
| !!! | TTTTCATCCTTAATTTTGGT+GGG | + | Chr2:57662079-57662098 | MsG0280009758.01.T01:intron | 25.0% |
| ACGTTTGGATTTCTTGATAT+TGG | + | Chr2:57662657-57662676 | MsG0280009758.01.T01:CDS | 30.0% | |
| ATAAGCTGAAAGCAACTTAT+CGG | - | Chr2:57662294-57662313 | None:intergenic | 30.0% | |
| GATGTTTCCATAAACTATCT+TGG | - | Chr2:57662330-57662349 | None:intergenic | 30.0% | |
| TGGCAACTTTAAATTTGAAG+TGG | + | Chr2:57662722-57662741 | MsG0280009758.01.T01:CDS | 30.0% | |
| TGTAAAACCAGCTGTAAAAA+GGG | - | Chr2:57662689-57662708 | None:intergenic | 30.0% | |
| ! | CACAAATAGATTTTCCATTG+TGG | - | Chr2:57661912-57661931 | None:intergenic | 30.0% |
| ! | TTTACTCTGGATTAGAAGAT+TGG | + | Chr2:57662160-57662179 | MsG0280009758.01.T01:intron | 30.0% |
| AACACAACCCACCAAAATTA+AGG | - | Chr2:57662089-57662108 | None:intergenic | 35.0% | |
| AAGACACTAGAAGAAACCTT+GGG | + | Chr2:57662609-57662628 | MsG0280009758.01.T01:CDS | 35.0% | |
| AAGCTCTCCAAGATAGTTTA+TGG | + | Chr2:57662320-57662339 | MsG0280009758.01.T01:intron | 35.0% | |
| AGGACAATGTAGCTTTCAAA+AGG | + | Chr2:57662543-57662562 | MsG0280009758.01.T01:intron | 35.0% | |
| GACAATGTAGCTTTCAAAAG+GGG | + | Chr2:57662545-57662564 | MsG0280009758.01.T01:intron | 35.0% | |
| GGACAATGTAGCTTTCAAAA+GGG | + | Chr2:57662544-57662563 | MsG0280009758.01.T01:intron | 35.0% | |
| GTGTAAAACCAGCTGTAAAA+AGG | - | Chr2:57662690-57662709 | None:intergenic | 35.0% | |
| TGCAGTACATAGATGAAGTT+TGG | + | Chr2:57661947-57661966 | MsG0280009758.01.T01:CDS | 35.0% | |
| TTACAGTCAAATACGACTAC+CGG | + | Chr2:57662494-57662513 | MsG0280009758.01.T01:intron | 35.0% | |
| TTCCATTGTGGATAAGAACT+GGG | - | Chr2:57661900-57661919 | None:intergenic | 35.0% | |
| TTTCCATTGTGGATAAGAAC+TGG | - | Chr2:57661901-57661920 | None:intergenic | 35.0% | |
| AACTCTTCCTGATGAGAAGA+AGG | + | Chr2:57662803-57662822 | MsG0280009758.01.T01:CDS | 40.0% | |
| AATGTAGCTTTCAAAAGGGG+AGG | + | Chr2:57662548-57662567 | MsG0280009758.01.T01:intron | 40.0% | |
| ACTGGGATCTTCTTGTGAAT+TGG | - | Chr2:57661883-57661902 | None:intergenic | 40.0% | |
| AGTGTCCTAAACTCATGACT+TGG | + | Chr2:57662745-57662764 | MsG0280009758.01.T01:CDS | 40.0% | |
| ATAAAAAGGCTTGTCACCCA+AGG | - | Chr2:57662628-57662647 | None:intergenic | 40.0% | |
| ATCCCAGTTCTTATCCACAA+TGG | + | Chr2:57661895-57661914 | MsG0280009758.01.T01:CDS | 40.0% | |
| CAAGACACTAGAAGAAACCT+TGG | + | Chr2:57662608-57662627 | MsG0280009758.01.T01:CDS | 40.0% | |
| CTGGGATCTTCTTGTGAATT+GGG | - | Chr2:57661882-57661901 | None:intergenic | 40.0% | |
| GAATGTAGGTGTATGCTACT+TGG | + | Chr2:57662520-57662539 | MsG0280009758.01.T01:intron | 40.0% | |
| GTGTCCTAAACTCATGACTT+GGG | + | Chr2:57662746-57662765 | MsG0280009758.01.T01:CDS | 40.0% | |
| TCATACACCTTCTTCTCATC+AGG | - | Chr2:57662813-57662832 | None:intergenic | 40.0% | |
| TTGACCCAAGTCATGAGTTT+AGG | - | Chr2:57662753-57662772 | None:intergenic | 40.0% | |
| ! | CGGCATCTCATAAGTTGTTT+TGG | - | Chr2:57662274-57662293 | None:intergenic | 40.0% |
| ! | GTTTGATCCCTTTTTACAGC+TGG | + | Chr2:57662679-57662698 | MsG0280009758.01.T01:CDS | 40.0% |
| ! | TTGGGTGACAAGCCTTTTTA+TGG | + | Chr2:57662627-57662646 | MsG0280009758.01.T01:CDS | 40.0% |
| AACGTAGCACCGCCATAAAA+AGG | - | Chr2:57662642-57662661 | None:intergenic | 45.0% | |
| AGAGAGCTCAAGCTAGATTC+TGG | + | Chr2:57662007-57662026 | MsG0280009758.01.T01:CDS | 45.0% | |
| AGCTCTCTCATAAGGATCAG+AGG | - | Chr2:57661995-57662014 | None:intergenic | 45.0% | |
| CTAGCTTGAGCTCTCTCATA+AGG | - | Chr2:57662003-57662022 | None:intergenic | 45.0% | |
| GCATACACCTACATTCAAGC+CGG | - | Chr2:57662516-57662535 | None:intergenic | 45.0% | |
| GCTCTCTCATAAGGATCAGA+GGG | - | Chr2:57661994-57662013 | None:intergenic | 45.0% | |
| GGAGCATGAGGAAAGAAAGA+AGG | + | Chr2:57662569-57662588 | MsG0280009758.01.T01:CDS | 45.0% | |
| ! | GGTGACAAGCCTTTTTATGG+CGG | + | Chr2:57662630-57662649 | MsG0280009758.01.T01:CDS | 45.0% |
| ! | TGTAGGTGTATGCTACTTGG+AGG | + | Chr2:57662523-57662542 | MsG0280009758.01.T01:intron | 45.0% |
| !! | GTGAGCATGAAGAAAGCACT+TGG | + | Chr2:57662840-57662859 | MsG0280009758.01.T01:CDS | 45.0% |
| !!! | TTTTATGGCGGTGCTACGTT+TGG | + | Chr2:57662642-57662661 | MsG0280009758.01.T01:CDS | 45.0% |
| GACTTGGGTCAAGAGATGCA+TGG | + | Chr2:57662761-57662780 | MsG0280009758.01.T01:CDS | 50.0% | |
| ! | TTCAAAAGGGGAGGAGCATG+AGG | + | Chr2:57662557-57662576 | MsG0280009758.01.T01:CDS | 50.0% |
| !! | ACGACTACCGGCTTGAATGT+AGG | + | Chr2:57662506-57662525 | MsG0280009758.01.T01:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 57661775 | 57662872 | 57661775 | ID=MsG0280009758.01;Name=MsG0280009758.01 |
| Chr2 | mRNA | 57661775 | 57662872 | 57661775 | ID=MsG0280009758.01.T01;Parent=MsG0280009758.01;Name=MsG0280009758.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|197 |
| Chr2 | exon | 57661775 | 57662050 | 57661775 | ID=MsG0280009758.01.T01:exon:6111;Parent=MsG0280009758.01.T01 |
| Chr2 | exon | 57662555 | 57662872 | 57662555 | ID=MsG0280009758.01.T01:exon:6112;Parent=MsG0280009758.01.T01 |
| Chr2 | CDS | 57661775 | 57662050 | 57661775 | ID=MsG0280009758.01.T01:cds;Parent=MsG0280009758.01.T01 |
| Chr2 | CDS | 57662555 | 57662872 | 57662555 | ID=MsG0280009758.01.T01:cds;Parent=MsG0280009758.01.T01 |
| Gene Sequence |
| Protein sequence |
