AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009756.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009756.01.T01 MTR_2g070060 97.260 219 6 0 1 219 1 219 1.57e-160 442
MsG0280009756.01.T01 MTR_2g070070 85.388 219 32 0 1 219 1 219 4.81e-134 375
MsG0280009756.01.T01 MTR_2g070110 84.018 219 34 1 1 219 1 218 3.65e-132 370
MsG0280009756.01.T01 MTR_2g070180 64.651 215 76 0 1 215 1 215 7.14e-109 311
MsG0280009756.01.T01 MTR_2g070150 66.667 204 68 0 1 204 1 204 1.10e-105 303
MsG0280009756.01.T01 MTR_2g070140 65.025 203 71 0 17 219 1 203 3.48e-103 296
MsG0280009756.01.T01 MTR_2g070130 60.731 219 86 0 1 219 1 219 3.97e-102 295
MsG0280009756.01.T01 MTR_8g056940 63.927 219 79 0 1 219 1 219 7.01e-102 294
MsG0280009756.01.T01 MTR_2g070210 59.276 221 88 1 1 219 1 221 1.29e-97 283
MsG0280009756.01.T01 MTR_2g070200 60.000 220 86 2 1 218 1 220 1.36e-95 278
MsG0280009756.01.T01 MTR_3g467420 58.140 215 90 0 5 219 10 224 3.34e-94 275
MsG0280009756.01.T01 MTR_4g124130 59.091 220 89 1 1 219 1 220 2.89e-92 270
MsG0280009756.01.T01 MTR_3g467430 56.604 212 92 0 3 214 8 219 4.20e-90 264
MsG0280009756.01.T01 MTR_2g070120 54.067 209 96 0 1 209 1 209 3.91e-82 244
MsG0280009756.01.T01 MTR_5g076900 49.315 219 109 2 2 219 4 221 1.19e-73 223
MsG0280009756.01.T01 MTR_0186s0030 66.667 141 47 0 1 141 1 141 2.73e-63 193
MsG0280009756.01.T01 MTR_5g040430 36.323 223 132 3 2 217 5 224 8.51e-50 162
MsG0280009756.01.T01 MTR_5g037380 39.910 223 125 4 3 216 4 226 2.67e-47 155
MsG0280009756.01.T01 MTR_1g090060 40.952 210 119 3 4 209 3 211 1.58e-44 148
MsG0280009756.01.T01 MTR_8g087425 39.130 207 121 4 2 205 3 207 5.85e-44 147
MsG0280009756.01.T01 MTR_2g072120 91.549 71 6 0 47 117 1 71 1.40e-43 141
MsG0280009756.01.T01 MTR_4g019780 37.981 208 124 4 4 208 8 213 3.89e-42 142
MsG0280009756.01.T01 MTR_8g087410 39.320 206 119 5 1 202 2 205 5.98e-42 142
MsG0280009756.01.T01 MTR_4g019790 39.810 211 122 4 4 211 7 215 1.49e-41 140
MsG0280009756.01.T01 MTR_3g099757 37.963 216 131 3 3 216 4 218 7.52e-41 139
MsG0280009756.01.T01 MTR_4g059730 37.900 219 125 5 1 212 1 215 2.06e-40 137
MsG0280009756.01.T01 MTR_1g090070 38.462 221 127 6 4 217 9 227 2.52e-40 138
MsG0280009756.01.T01 MTR_6g080440 37.321 209 126 4 3 208 2 208 7.08e-40 136
MsG0280009756.01.T01 MTR_7g065750 39.189 222 122 6 4 214 7 226 9.83e-40 136
MsG0280009756.01.T01 MTR_7g065720 36.321 212 123 5 4 208 7 213 1.08e-39 136
MsG0280009756.01.T01 MTR_7g065660 37.681 207 124 4 5 208 8 212 3.37e-39 135
MsG0280009756.01.T01 MTR_1g090100 41.089 202 114 3 11 208 9 209 4.09e-39 134
MsG0280009756.01.T01 MTR_7g065630 37.981 208 118 6 4 206 25 226 1.54e-38 133
MsG0280009756.01.T01 MTR_8g061950 35.849 212 127 3 3 205 4 215 8.93e-38 131
MsG0280009756.01.T01 MTR_7g065590 37.500 208 125 4 4 208 7 212 1.31e-37 130
MsG0280009756.01.T01 MTR_7g065740 35.885 209 128 4 4 208 7 213 1.95e-37 130
MsG0280009756.01.T01 MTR_1g090090 39.713 209 121 4 4 208 3 210 4.69e-37 129
MsG0280009756.01.T01 MTR_7g065710 35.545 211 127 5 1 208 1 205 9.96e-37 128
MsG0280009756.01.T01 MTR_1g090150 35.945 217 133 4 4 216 3 217 1.19e-36 128
MsG0280009756.01.T01 MTR_7g065230 37.500 208 120 5 4 208 7 207 2.37e-35 125
MsG0280009756.01.T01 MTR_7g065265 36.538 208 127 4 4 208 7 212 2.35e-34 122
MsG0280009756.01.T01 MTR_7g065270 36.058 208 128 4 4 208 7 212 7.40e-34 121
MsG0280009756.01.T01 MTR_7g065680 35.577 208 125 5 4 208 7 208 9.46e-34 120
MsG0280009756.01.T01 MTR_1g115195 34.615 208 128 4 4 205 3 208 2.88e-33 119
MsG0280009756.01.T01 MTR_7g065700 35.545 211 127 5 1 208 4 208 3.56e-33 119
MsG0280009756.01.T01 MTR_7g065600 36.634 202 123 4 5 203 8 207 4.52e-33 119
MsG0280009756.01.T01 MTR_7g065290 36.058 208 128 4 4 208 7 212 1.29e-32 118
MsG0280009756.01.T01 MTR_7g065640 32.683 205 119 4 5 208 8 194 3.07e-30 111
MsG0280009756.01.T01 MTR_7g065260 37.129 202 122 4 4 202 14 213 7.20e-30 111
MsG0280009756.01.T01 MTR_4g043640 57.143 42 18 0 148 189 44 85 5.17e-13 62.8
MsG0280009756.01.T01 MTR_5g037390 41.860 86 48 1 30 113 13 98 1.06e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009756.01.T01 AT1G78380 64.953 214 75 0 1 214 1 214 3.63e-104 300
MsG0280009756.01.T01 AT1G17180 62.100 219 83 0 1 219 1 219 6.15e-104 299
MsG0280009756.01.T01 AT1G78370 61.682 214 82 0 1 214 1 214 8.31e-98 284
MsG0280009756.01.T01 AT1G17170 60.274 219 86 1 1 219 1 218 2.18e-97 283
MsG0280009756.01.T01 AT1G78360 61.364 220 84 1 1 219 1 220 4.65e-97 282
MsG0280009756.01.T01 AT1G78340 60.465 215 85 0 1 215 1 215 1.37e-96 281
MsG0280009756.01.T01 AT1G78320 60.000 220 87 1 1 219 1 220 7.95e-95 276
MsG0280009756.01.T01 AT1G17190 57.798 218 91 1 1 217 1 218 5.11e-90 264
MsG0280009756.01.T01 AT1G53680 54.338 219 98 2 3 219 6 224 1.36e-88 261
MsG0280009756.01.T01 AT3G43800 52.055 219 101 3 4 218 5 223 4.41e-79 236
MsG0280009756.01.T01 AT1G78320 52.273 220 77 2 1 219 1 193 1.22e-75 226
MsG0280009756.01.T01 AT1G10360 41.743 218 118 5 1 209 1 218 7.86e-50 162
MsG0280009756.01.T01 AT3G09270 41.667 216 120 3 5 217 7 219 7.16e-49 159
MsG0280009756.01.T01 AT1G59700 41.284 218 113 5 4 209 6 220 2.85e-46 153
MsG0280009756.01.T01 AT1G59670 44.037 218 107 5 4 209 6 220 1.09e-45 152
MsG0280009756.01.T01 AT2G29420 40.394 203 118 2 2 202 7 208 1.71e-45 151
MsG0280009756.01.T01 AT1G10370 39.189 222 121 4 2 212 3 221 4.87e-44 147
MsG0280009756.01.T01 AT1G74590 40.513 195 110 4 3 191 6 200 1.20e-42 144
MsG0280009756.01.T01 AT1G27130 36.697 218 123 4 3 208 5 219 4.34e-42 142
MsG0280009756.01.T01 AT2G29490 36.744 215 132 2 5 216 8 221 6.05e-41 139
MsG0280009756.01.T01 AT1G27140 39.512 205 114 5 15 209 17 221 1.75e-40 139
MsG0280009756.01.T01 AT2G29470 37.089 213 127 5 5 212 8 218 2.10e-40 138
MsG0280009756.01.T01 AT2G29480 40.488 205 114 6 5 204 8 209 1.04e-39 136
MsG0280009756.01.T01 AT2G29450 39.234 209 114 6 4 204 6 209 3.33e-39 135
MsG0280009756.01.T01 AT2G29440 40.191 209 111 6 4 204 6 208 5.32e-39 134
MsG0280009756.01.T01 AT2G29460 38.647 207 119 6 3 204 6 209 2.24e-38 132
MsG0280009756.01.T01 AT1G69920 35.714 224 115 5 5 209 35 248 5.42e-38 132
MsG0280009756.01.T01 AT1G69930 35.849 212 129 3 5 209 13 224 7.34e-38 132
MsG0280009756.01.T01 AT5G62480 32.444 225 142 2 1 215 5 229 2.91e-37 130
MsG0280009756.01.T01 AT5G62480 27.556 225 127 4 1 215 5 203 2.22e-21 88.6
MsG0280009756.01.T01 AT5G62480 27.111 225 127 3 1 215 5 202 2.54e-21 88.2

Find 45 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGCTCAAGCTAGATTT+TGG 0.158333 2:+57653149 MsG0280009756.01.T01:CDS
GACCTTATTACAATCATATT+TGG 0.180627 2:-57655356 None:intergenic
CACAAATGGATTTACCATTA+TGG 0.237873 2:-57653051 None:intergenic
ACATTTGGGTTTCTTGATAT+TGG 0.275190 2:+57655031 MsG0280009756.01.T01:CDS
ACTGGAATCTTCTTATGAAT+TGG 0.280289 2:-57653022 None:intergenic
GGTTGATTATAGTGACAAAA+AGG 0.317820 2:+57653171 MsG0280009756.01.T01:CDS
AGCCTTTGATTAATGTACTA+TGG 0.323415 2:+57655404 MsG0280009756.01.T01:three_prime_UTR
GCATAAAACCAGCTATAAAA+AGG 0.324151 2:-57655061 None:intergenic
TTTATGGTGGTGACACATTT+GGG 0.324656 2:+57655017 MsG0280009756.01.T01:CDS
GACATATGGCAACTTCAAAA+TGG 0.325407 2:+57655090 MsG0280009756.01.T01:CDS
TTTAAATATTTATGTTTAGT+AGG 0.329338 2:+57655269 MsG0280009756.01.T01:three_prime_UTR
TGCAGTACATAGATGAAGTT+TGG 0.332448 2:+57653089 MsG0280009756.01.T01:CDS
GATACATGGGCTAGCATGTT+TGG 0.368138 2:+57652902 MsG0280009756.01.T01:CDS
ATTCCAGTTCTTATCCATAA+TGG 0.369994 2:+57653037 MsG0280009756.01.T01:CDS
TTGGTCCAAGCCATTAGTTT+AGG 0.371833 2:-57655124 None:intergenic
GCTTTGATTAATATATCATA+TGG 0.392396 2:+57655291 MsG0280009756.01.T01:three_prime_UTR
TCATACACTTTCTTCTGATC+AGG 0.396880 2:-57655184 None:intergenic
ATCTCTCTCCATGCATCTCT+TGG 0.408511 2:-57655143 None:intergenic
AACCAAATATGATTGTAATA+AGG 0.408786 2:+57655354 MsG0280009756.01.T01:three_prime_UTR
GCTCTCTCATAAGGATTAGA+AGG 0.410231 2:-57653133 None:intergenic
TGTGTCTACAATATTGCATT+TGG 0.414745 2:+57655331 MsG0280009756.01.T01:three_prime_UTR
TTACCATTATGGATAAGAAC+TGG 0.430578 2:-57653040 None:intergenic
AAGAAAATGTGGCTTTCAAA+AGG 0.435917 2:+57654917 MsG0280009756.01.T01:CDS
AGAATATGAGGAAGGGAAGA+TGG 0.442414 2:+57654943 MsG0280009756.01.T01:CDS
ATTGTGTCTAGTATTACATC+TGG 0.448003 2:+57655442 MsG0280009756.01.T01:three_prime_UTR
AACGGAGTGTCCTAAACTAA+TGG 0.448765 2:+57655114 MsG0280009756.01.T01:CDS
ATGATTGTCATTTGTTGCTA+TGG 0.457522 2:+57655484 MsG0280009756.01.T01:three_prime_UTR
CTAGCTTGAGCTCTCTCATA+AGG 0.462092 2:-57653142 None:intergenic
GTGAGCATTAAGAAAGTACT+TGG 0.462381 2:+57655214 MsG0280009756.01.T01:CDS
AATAATTGCAGATTCACAAA+TGG 0.471536 2:-57653065 None:intergenic
CAGTTCTCACTAGACAACTT+AGG 0.484506 2:+57652843 None:intergenic
AAAGGAGAAGAATATGAGGA+AGG 0.489666 2:+57654935 MsG0280009756.01.T01:CDS
TTCAAAAGGAGAAGAATATG+AGG 0.519962 2:+57654931 MsG0280009756.01.T01:CDS
TGGCAACTTCAAAATGGAAA+CGG 0.530941 2:+57655096 MsG0280009756.01.T01:CDS
GGATTCATCTGAAGAAGTAA+AGG 0.531810 2:-57653001 None:intergenic
ATGACACTTGGAAGAAAATG+TGG 0.537717 2:+57654906 MsG0280009756.01.T01:CDS
AGGTAATTCTGTTAGATACA+TGG 0.538022 2:+57652888 MsG0280009756.01.T01:CDS
AAGGAGAAGAATATGAGGAA+GGG 0.539682 2:+57654936 MsG0280009756.01.T01:CDS
ATATGTAGGTTTATGACACT+TGG 0.541669 2:+57654894 MsG0280009756.01.T01:intron
AGTGTCCTAAACTAATGGCT+TGG 0.548948 2:+57655119 MsG0280009756.01.T01:CDS
AACCATAGTACATTAATCAA+AGG 0.562869 2:-57655406 None:intergenic
GGTAATTCTGTTAGATACAT+GGG 0.584405 2:+57652889 MsG0280009756.01.T01:CDS
CTCTATCTTTAAGACACTAG+AGG 0.601570 2:+57654973 MsG0280009756.01.T01:CDS
TCTATCTTTAAGACACTAGA+GGG 0.610752 2:+57654974 MsG0280009756.01.T01:CDS
GGCTTGGACCAAGAGATGCA+TGG 0.654997 2:+57655135 MsG0280009756.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGATTATAAAATTAAG+AGG - Chr2:57653221-57653240 None:intergenic 10.0%
!! ACAAAATTATCAATATATAT+AGG - Chr2:57653597-57653616 None:intergenic 10.0%
!! CAAAATTATCAATATATATA+GGG - Chr2:57653596-57653615 None:intergenic 10.0%
!! TAAAAAAATATTATCCATAA+AGG + Chr2:57654431-57654450 MsG0280009756.01.T01:intron 10.0%
!! TTTAAATATTTATGTTTAGT+AGG + Chr2:57655269-57655288 MsG0280009756.01.T01:three_prime_UTR 10.0%
!!! CTTAATTTTATAATCAATTT+TGG + Chr2:57653221-57653240 MsG0280009756.01.T01:intron 10.0%
!! AAATAAATCCACAAAAATAA+AGG - Chr2:57654642-57654661 None:intergenic 15.0%
!! AACATTATTAAAAACAAACA+AGG + Chr2:57654461-57654480 MsG0280009756.01.T01:intron 15.0%
!! AATTAAGAAGCAATATATTT+AGG + Chr2:57654293-57654312 MsG0280009756.01.T01:intron 15.0%
!! AGCATATTAATCTTATAATT+TGG - Chr2:57653379-57653398 None:intergenic 15.0%
!!! AAGCTTTTGTTTAATAAAAA+TGG + Chr2:57654172-57654191 MsG0280009756.01.T01:intron 15.0%
!!! TAAGTCAGAAATTTTTTATA+AGG + Chr2:57653692-57653711 MsG0280009756.01.T01:intron 15.0%
!!! TAATGTTTTTTTTTCCTTTA+TGG - Chr2:57654448-57654467 None:intergenic 15.0%
!!! TTATTTTTGTGGATTTATTT+TGG + Chr2:57654642-57654661 MsG0280009756.01.T01:intron 15.0%
!! AAAAAGGTAACTTCTTAATT+TGG + Chr2:57653187-57653206 MsG0280009756.01.T01:intron 20.0%
!! AAAATATATACTAACAAGGA+TGG - Chr2:57653552-57653571 None:intergenic 20.0%
!! AACCAAATATGATTGTAATA+AGG + Chr2:57655354-57655373 MsG0280009756.01.T01:three_prime_UTR 20.0%
!! CCAAAAAATATATACTAACA+AGG - Chr2:57653556-57653575 None:intergenic 20.0%
!! GCTTTGATTAATATATCATA+TGG + Chr2:57655291-57655310 MsG0280009756.01.T01:three_prime_UTR 20.0%
!! GGATAAAGTAAATTAAATGA+TGG + Chr2:57653831-57653850 MsG0280009756.01.T01:intron 20.0%
!! GTGCAAAATATTAGAAATTA+TGG + Chr2:57653436-57653455 MsG0280009756.01.T01:intron 20.0%
!! TTATTAAACAAAAGCTTAAC+AGG - Chr2:57654169-57654188 None:intergenic 20.0%
!!! AAAATTTCTGACTTAACTTT+TGG - Chr2:57653687-57653706 None:intergenic 20.0%
!!! AAGATCACATTTTTTAGTAT+CGG + Chr2:57653635-57653654 MsG0280009756.01.T01:intron 20.0%
!!! ACTTTAAACAACAATTTTCT+CGG - Chr2:57654569-57654588 None:intergenic 20.0%
!!! AGATTTTATAAGTGCTTAAT+TGG + Chr2:57654117-57654136 MsG0280009756.01.T01:intron 20.0%
!!! ATAATTTGGAATATAACTCA+AGG - Chr2:57653365-57653384 None:intergenic 20.0%
!!! CCTTGTTAGTATATATTTTT+TGG + Chr2:57653553-57653572 MsG0280009756.01.T01:intron 20.0%
!!! CTTTTTTTAGCTTATGAAAT+CGG + Chr2:57653523-57653542 MsG0280009756.01.T01:intron 20.0%
!!! GATTTTATAAGTGCTTAATT+GGG + Chr2:57654118-57654137 MsG0280009756.01.T01:intron 20.0%
!!! GTGTTCTTTATTTAATCTAA+TGG + Chr2:57654800-57654819 MsG0280009756.01.T01:intron 20.0%
!!! TCTATTTTCCTTTATTTTTG+TGG + Chr2:57654631-57654650 MsG0280009756.01.T01:intron 20.0%
!!! TTTTGGTCTATAAAAAGTTA+AGG - Chr2:57653670-57653689 None:intergenic 20.0%
! AACCATAGTACATTAATCAA+AGG - Chr2:57655409-57655428 None:intergenic 25.0%
! AATAATTGCAGATTCACAAA+TGG - Chr2:57653068-57653087 None:intergenic 25.0%
! ACAGAGATTAAAAAAACTGA+TGG + Chr2:57653740-57653759 MsG0280009756.01.T01:intron 25.0%
! ATATGCTTATTAGAAATCTC+AGG + Chr2:57653465-57653484 MsG0280009756.01.T01:intron 25.0%
! CAGAGATTAAAAAAACTGAT+GGG + Chr2:57653741-57653760 MsG0280009756.01.T01:intron 25.0%
! CTACATATACATTCAAAGAT+CGG - Chr2:57654882-57654901 None:intergenic 25.0%
! GACCTTATTACAATCATATT+TGG - Chr2:57655359-57655378 None:intergenic 25.0%
! TAAAAACAAACAAGGAACTA+GGG + Chr2:57654469-57654488 MsG0280009756.01.T01:intron 25.0%
! TAAAGAACACATCTTTATCA+TGG - Chr2:57654790-57654809 None:intergenic 25.0%
! TATGCTTATTAGAAATCTCA+GGG + Chr2:57653466-57653485 MsG0280009756.01.T01:intron 25.0%
! TTAAAAACAAACAAGGAACT+AGG + Chr2:57654468-57654487 MsG0280009756.01.T01:intron 25.0%
! TTGCTGAATCTATAATTTAG+TGG - Chr2:57654059-57654078 None:intergenic 25.0%
!! ACTTAGGATTTTTACAATCA+TGG + Chr2:57652859-57652878 MsG0280009756.01.T01:exon 25.0%
!! AGAAGCAATATATTTAGGAT+AGG + Chr2:57654298-57654317 MsG0280009756.01.T01:intron 25.0%
!! CTTTAAACAACAATTTTCTC+GGG - Chr2:57654568-57654587 None:intergenic 25.0%
!! TCTAATATTTTGCACTTGAA+TGG - Chr2:57653431-57653450 None:intergenic 25.0%
!! TTTAAACAACAATTTTCTCG+GGG - Chr2:57654567-57654586 None:intergenic 25.0%
!!! AGTATTACATCTGGAATTTT+AGG + Chr2:57655451-57655470 MsG0280009756.01.T01:three_prime_UTR 25.0%
!!! CTGAAAATGTTATTTTCATG+TGG - Chr2:57654504-57654523 None:intergenic 25.0%
!!! GAGAAAATTGTTGTTTAAAG+TGG + Chr2:57654568-57654587 MsG0280009756.01.T01:intron 25.0%
!!! GATTTATTTTGGTCAACAAA+AGG + Chr2:57654653-57654672 MsG0280009756.01.T01:intron 25.0%
!!! TTTTATGCTTTTGAGACATA+TGG + Chr2:57655076-57655095 MsG0280009756.01.T01:CDS 25.0%
AAAAAAAACTTTCCCATGGT+GGG + Chr2:57654825-57654844 MsG0280009756.01.T01:intron 30.0%
AAGAAAATGTGGCTTTCAAA+AGG + Chr2:57654917-57654936 MsG0280009756.01.T01:CDS 30.0%
ACTGGAATCTTCTTATGAAT+TGG - Chr2:57653025-57653044 None:intergenic 30.0%
AGCCTTTGATTAATGTACTA+TGG + Chr2:57655404-57655423 MsG0280009756.01.T01:three_prime_UTR 30.0%
AGGTAATTCTGTTAGATACA+TGG + Chr2:57652888-57652907 MsG0280009756.01.T01:CDS 30.0%
ATATACATTCAAAGATCGGT+GGG - Chr2:57654878-57654897 None:intergenic 30.0%
ATATGTAGGTTTATGACACT+TGG + Chr2:57654894-57654913 MsG0280009756.01.T01:intron 30.0%
ATTCCAGTTCTTATCCATAA+TGG + Chr2:57653037-57653056 MsG0280009756.01.T01:CDS 30.0%
ATTGTGTCTAGTATTACATC+TGG + Chr2:57655442-57655461 MsG0280009756.01.T01:three_prime_UTR 30.0%
CGATCTTTGAATGTATATGT+AGG + Chr2:57654880-57654899 MsG0280009756.01.T01:intron 30.0%
CTGAATCTATAATTTAGTGG+TGG - Chr2:57654056-57654075 None:intergenic 30.0%
GAAGAATCTGAAAATTTCAG+CGG + Chr2:57654375-57654394 MsG0280009756.01.T01:intron 30.0%
GCATAAAACCAGCTATAAAA+AGG - Chr2:57655064-57655083 None:intergenic 30.0%
GGTAATTCTGTTAGATACAT+GGG + Chr2:57652889-57652908 MsG0280009756.01.T01:CDS 30.0%
GGTTGATTATAGTGACAAAA+AGG + Chr2:57653171-57653190 MsG0280009756.01.T01:CDS 30.0%
GTTGAGTCAAAGCTTAAAAA+AGG + Chr2:57654264-57654283 MsG0280009756.01.T01:intron 30.0%
TACCATAATCACTAGTAACT+CGG + Chr2:57654215-57654234 MsG0280009756.01.T01:intron 30.0%
TAGAGTCTAATCTCATTGAA+GGG - Chr2:57653270-57653289 None:intergenic 30.0%
TATGTCCATTAGATCAAATG+AGG + Chr2:57653937-57653956 MsG0280009756.01.T01:intron 30.0%
TCATCCAAAAATTAAACTCG+AGG + Chr2:57653336-57653355 MsG0280009756.01.T01:intron 30.0%
TCTATAAGTAACAAAAGTCG+TGG + Chr2:57653810-57653829 MsG0280009756.01.T01:intron 30.0%
TGTGTCTACAATATTGCATT+TGG + Chr2:57655331-57655350 MsG0280009756.01.T01:three_prime_UTR 30.0%
TTACCATTATGGATAAGAAC+TGG - Chr2:57653043-57653062 None:intergenic 30.0%
TTAGAGTCTAATCTCATTGA+AGG - Chr2:57653271-57653290 None:intergenic 30.0%
TTCAAAAGGAGAAGAATATG+AGG + Chr2:57654931-57654950 MsG0280009756.01.T01:CDS 30.0%
TTGTTCCTCATTTGATCTAA+TGG - Chr2:57653945-57653964 None:intergenic 30.0%
! ACATTTGGGTTTCTTGATAT+TGG + Chr2:57655031-57655050 MsG0280009756.01.T01:CDS 30.0%
! ATAATCAACTTTTCCATGGT+GGG - Chr2:57653920-57653939 None:intergenic 30.0%
! ATGATTGTCATTTGTTGCTA+TGG + Chr2:57655484-57655503 MsG0280009756.01.T01:three_prime_UTR 30.0%
! CACAAATGGATTTACCATTA+TGG - Chr2:57653054-57653073 None:intergenic 30.0%
! GTTTGATTCCTTTTTATAGC+TGG + Chr2:57655053-57655072 MsG0280009756.01.T01:CDS 30.0%
! TAATATAGTGTTGAGAGAGT+AGG - Chr2:57653976-57653995 None:intergenic 30.0%
! TGATGGACAATACAAACATT+CGG + Chr2:57653848-57653867 MsG0280009756.01.T01:intron 30.0%
! TTAAACAACAATTTTCTCGG+GGG - Chr2:57654566-57654585 None:intergenic 30.0%
! TTAATTCGAACACGATTTTG+TGG + Chr2:57654607-57654626 MsG0280009756.01.T01:intron 30.0%
! TTTTGGTCAACAAAAGGATT+GGG + Chr2:57654659-57654678 MsG0280009756.01.T01:intron 30.0%
!! ATTACATCTGGAATTTTAGG+AGG + Chr2:57655454-57655473 MsG0280009756.01.T01:three_prime_UTR 30.0%
!! ATTTTGGTCAACAAAAGGAT+TGG + Chr2:57654658-57654677 MsG0280009756.01.T01:intron 30.0%
!! CGACTTTTGTTACTTATAGA+CGG - Chr2:57653810-57653829 None:intergenic 30.0%
!! TCTATCTTTAAGACACTAGA+GGG + Chr2:57654974-57654993 MsG0280009756.01.T01:CDS 30.0%
!!! TTGAGTGACAAGCTTTTTTA+TGG + Chr2:57655001-57655020 MsG0280009756.01.T01:CDS 30.0%
AAACTGATGGGAAATTTCAC+AGG + Chr2:57653753-57653772 MsG0280009756.01.T01:intron 35.0%
AAAGGAGAAGAATATGAGGA+AGG + Chr2:57654935-57654954 MsG0280009756.01.T01:CDS 35.0%
AAGGAGAAGAATATGAGGAA+GGG + Chr2:57654936-57654955 MsG0280009756.01.T01:CDS 35.0%
ATGACACTTGGAAGAAAATG+TGG + Chr2:57654906-57654925 MsG0280009756.01.T01:CDS 35.0%
ATTTAGTGGTGGTTGTGATA+TGG - Chr2:57654045-57654064 None:intergenic 35.0%
CAAAAAAAACTTTCCCATGG+TGG + Chr2:57654824-57654843 MsG0280009756.01.T01:intron 35.0%
CAAAATACGAGAACTGATTG+TGG + Chr2:57654334-57654353 MsG0280009756.01.T01:intron 35.0%
CATATACATTCAAAGATCGG+TGG - Chr2:57654879-57654898 None:intergenic 35.0%
CTATTTACCCAAAGACACTT+TGG + Chr2:57654141-57654160 MsG0280009756.01.T01:intron 35.0%
GACATATGGCAACTTCAAAA+TGG + Chr2:57655090-57655109 MsG0280009756.01.T01:CDS 35.0%
GGACAAAAAAAACTTTCCCA+TGG + Chr2:57654821-57654840 MsG0280009756.01.T01:intron 35.0%
GGATTCATCTGAAGAAGTAA+AGG - Chr2:57653004-57653023 None:intergenic 35.0%
TCATACACTTTCTTCTGATC+AGG - Chr2:57655187-57655206 None:intergenic 35.0%
TGCAGTACATAGATGAAGTT+TGG + Chr2:57653089-57653108 MsG0280009756.01.T01:CDS 35.0%
TGGCAACTTCAAAATGGAAA+CGG + Chr2:57655096-57655115 MsG0280009756.01.T01:CDS 35.0%
TGTTGGAAGATATTGTGAAG+TGG + Chr2:57654707-57654726 MsG0280009756.01.T01:intron 35.0%
TTGAAGGTGGGATTTAGTAT+GGG + Chr2:57653879-57653898 MsG0280009756.01.T01:intron 35.0%
TTTAGTGGTGGTTGTGATAT+GGG - Chr2:57654044-57654063 None:intergenic 35.0%
! ATTGTGGTATTTTCACTTCG+TGG + Chr2:57654350-57654369 MsG0280009756.01.T01:intron 35.0%
! CATAATCAACTTTTCCATGG+TGG - Chr2:57653921-57653940 None:intergenic 35.0%
! GGACATAATCAACTTTTCCA+TGG - Chr2:57653924-57653943 None:intergenic 35.0%
! TTTATGGTGGTGACACATTT+GGG + Chr2:57655017-57655036 MsG0280009756.01.T01:CDS 35.0%
!! ACATTCGGTATTGATCTTGA+AGG + Chr2:57653863-57653882 MsG0280009756.01.T01:intron 35.0%
!! CTCTATCTTTAAGACACTAG+AGG + Chr2:57654973-57654992 MsG0280009756.01.T01:CDS 35.0%
!! GAAGCCTCGAGTTTAATTTT+TGG - Chr2:57653343-57653362 None:intergenic 35.0%
!! GTGAGCATTAAGAAAGTACT+TGG + Chr2:57655214-57655233 MsG0280009756.01.T01:CDS 35.0%
!! TTTTATGGTGGTGACACATT+TGG + Chr2:57655016-57655035 MsG0280009756.01.T01:CDS 35.0%
!!! AGTGACAAGCTTTTTTATGG+TGG + Chr2:57655004-57655023 MsG0280009756.01.T01:CDS 35.0%
AAGATCGGTGGGATTTAGTA+TGG - Chr2:57654867-57654886 None:intergenic 40.0%
AAGGAGGAAGATGAGTTAGA+GGG + Chr2:57654737-57654756 MsG0280009756.01.T01:intron 40.0%
AGAATATGAGGAAGGGAAGA+TGG + Chr2:57654943-57654962 MsG0280009756.01.T01:CDS 40.0%
AGATCGGTGGGATTTAGTAT+GGG - Chr2:57654866-57654885 None:intergenic 40.0%
AGTGTCCTAAACTAATGGCT+TGG + Chr2:57655119-57655138 MsG0280009756.01.T01:CDS 40.0%
CACAGGAACGGTAAAAAATG+TGG + Chr2:57653770-57653789 MsG0280009756.01.T01:intron 40.0%
CACCGAGTTACTAGTGATTA+TGG - Chr2:57654220-57654239 None:intergenic 40.0%
CTTGAAGGTGGGATTTAGTA+TGG + Chr2:57653878-57653897 MsG0280009756.01.T01:intron 40.0%
GATGGGAAATTTCACAGGAA+CGG + Chr2:57653758-57653777 MsG0280009756.01.T01:intron 40.0%
GCTCTCTCATAAGGATTAGA+AGG - Chr2:57653136-57653155 None:intergenic 40.0%
GGAAGATATTGTGAAGTGGT+GGG + Chr2:57654711-57654730 MsG0280009756.01.T01:intron 40.0%
TGGAAGATATTGTGAAGTGG+TGG + Chr2:57654710-57654729 MsG0280009756.01.T01:intron 40.0%
TGGGATTTAGTATGGGAAAG+TGG + Chr2:57653886-57653905 MsG0280009756.01.T01:intron 40.0%
! AACAGGAACCAAAGTGTCTT+TGG - Chr2:57654152-57654171 None:intergenic 40.0%
! AACGGAGTGTCCTAAACTAA+TGG + Chr2:57655114-57655133 MsG0280009756.01.T01:CDS 40.0%
! ACAATTTTCTCGGGGGTTTT+TGG - Chr2:57654559-57654578 None:intergenic 40.0%
! ACAGGAACCAAAGTGTCTTT+GGG - Chr2:57654151-57654170 None:intergenic 40.0%
! AGAGAGCTCAAGCTAGATTT+TGG + Chr2:57653149-57653168 MsG0280009756.01.T01:CDS 40.0%
! ATCTTCCAACACCTTTTCCA+TGG - Chr2:57654698-57654717 None:intergenic 40.0%
! GAGAGCTCAAGCTAGATTTT+GGG + Chr2:57653150-57653169 MsG0280009756.01.T01:CDS 40.0%
! TTGGTCCAAGCCATTAGTTT+AGG - Chr2:57655127-57655146 None:intergenic 40.0%
! TTTTACAATCATGGCGAACG+AGG + Chr2:57652868-57652887 MsG0280009756.01.T01:exon 40.0%
!! ACATCTGGAATTTTAGGAGG+AGG + Chr2:57655457-57655476 MsG0280009756.01.T01:three_prime_UTR 40.0%
!! TCGGTATTGATCTTGAAGGT+GGG + Chr2:57653867-57653886 MsG0280009756.01.T01:intron 40.0%
!! TTCGGTATTGATCTTGAAGG+TGG + Chr2:57653866-57653885 MsG0280009756.01.T01:intron 40.0%
!!! CTCGTATTTTGATGTTTCGC+TGG - Chr2:57654325-57654344 None:intergenic 40.0%
AAGATGAGTTAGAGGGTGAG+TGG + Chr2:57654744-57654763 MsG0280009756.01.T01:intron 45.0%
ATCTCTCTCCATGCATCTCT+TGG - Chr2:57655146-57655165 None:intergenic 45.0%
CAAGGAGGAAGATGAGTTAG+AGG + Chr2:57654736-57654755 MsG0280009756.01.T01:intron 45.0%
CTAGCTTGAGCTCTCTCATA+AGG - Chr2:57653145-57653164 None:intergenic 45.0%
GGTGGGATTTAGTATGGGAA+AGG - Chr2:57653903-57653884 None:intergenic 45.0%
TCAACAAAAGGATTGGGTGG+TGG + Chr2:57654665-57654684 MsG0280009756.01.T01:intron 45.0%
TGGTCAACAAAAGGATTGGG+TGG + Chr2:57654662-57654681 MsG0280009756.01.T01:intron 45.0%
TGTGGAGACATGAAAGAGGA+GGG - Chr2:57654019-57654038 None:intergenic 45.0%
! GAGTTTTCCAGTAGCAACCA+TGG - Chr2:57654095-57654114 None:intergenic 45.0%
! TTTTCCAGTAGCAACCATGG+TGG - Chr2:57654092-57654111 None:intergenic 45.0%
!! CTGGAATTTTAGGAGGAGGA+GGG + Chr2:57655461-57655480 MsG0280009756.01.T01:three_prime_UTR 45.0%
!! GATACATGGGCTAGCATGTT+TGG + Chr2:57652902-57652921 MsG0280009756.01.T01:CDS 45.0%
!! TCTGGAATTTTAGGAGGAGG+AGG + Chr2:57655460-57655479 MsG0280009756.01.T01:three_prime_UTR 45.0%
!!! AGTGGTGTTTTTTCCCACCA+TGG + Chr2:57653904-57653923 MsG0280009756.01.T01:intron 45.0%
GGTGTGTGGAGACATGAAAG+AGG - Chr2:57654023-57654042 None:intergenic 50.0%
GTGGTTGTGATATGGGTGTG+TGG - Chr2:57654037-57654056 None:intergenic 50.0%
GTGTGGAGACATGAAAGAGG+AGG - Chr2:57654020-57654039 None:intergenic 50.0%
! ACAAAAGGATTGGGTGGTGG+TGG + Chr2:57654668-57654687 MsG0280009756.01.T01:intron 50.0%
! AGGAGAGTTGTTTCCCACCA+TGG - Chr2:57654841-57654860 None:intergenic 50.0%
! ATTGTGAAGTGGTGGGAGCA+AGG + Chr2:57654718-57654737 MsG0280009756.01.T01:intron 50.0%
! GGAGAGTTGTTTCCCACCAT+GGG - Chr2:57654840-57654859 None:intergenic 50.0%
CACACCACCATGGTTGCTAC+TGG + Chr2:57654085-57654104 MsG0280009756.01.T01:intron 55.0%
GGAGACATGAAAGAGGAGGG+TGG - Chr2:57654016-57654035 None:intergenic 55.0%
GGCTTGGACCAAGAGATGCA+TGG + Chr2:57655135-57655154 MsG0280009756.01.T01:CDS 55.0%
! GACGGCCATGGAAAAGGTGT+TGG + Chr2:57654690-57654709 MsG0280009756.01.T01:intron 55.0%
! GTAGCAACCATGGTGGTGTG+TGG - Chr2:57654085-57654104 None:intergenic 55.0%
!! AAGGATTGGGTGGTGGTGGA+CGG + Chr2:57654672-57654691 MsG0280009756.01.T01:intron 55.0%
GCAACCACCACACACCACCA+TGG + Chr2:57654075-57654094 MsG0280009756.01.T01:intron 60.0%
! GCAACCATGGTGGTGTGTGG+TGG - Chr2:57654082-57654101 None:intergenic 60.0%
! GTGAAGTGGTGGGAGCAAGG+AGG + Chr2:57654721-57654740 MsG0280009756.01.T01:intron 60.0%
!! GTGGTGGACGGCCATGGAAA+AGG + Chr2:57654684-57654703 MsG0280009756.01.T01:intron 60.0%
!! TGGGTGGTGGTGGACGGCCA+TGG + Chr2:57654678-57654697 MsG0280009756.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 57652854 57655564 57652854 ID=MsG0280009756.01;Name=MsG0280009756.01
Chr2 mRNA 57652854 57655564 57652854 ID=MsG0280009756.01.T01;Parent=MsG0280009756.01;Name=MsG0280009756.01.T01;_AED=0.49;_eAED=0.49;_QI=24|1|1|1|1|1|2|318|219
Chr2 exon 57652854 57653192 57652854 ID=MsG0280009756.01.T01:exon:6106;Parent=MsG0280009756.01.T01
Chr2 exon 57654902 57655564 57654902 ID=MsG0280009756.01.T01:exon:6107;Parent=MsG0280009756.01.T01
Chr2 five_prime_UTR 57652854 57652877 57652854 ID=MsG0280009756.01.T01:five_prime_utr;Parent=MsG0280009756.01.T01
Chr2 CDS 57652878 57653192 57652878 ID=MsG0280009756.01.T01:cds;Parent=MsG0280009756.01.T01
Chr2 CDS 57654902 57655246 57654902 ID=MsG0280009756.01.T01:cds;Parent=MsG0280009756.01.T01
Chr2 three_prime_UTR 57655247 57655564 57655247 ID=MsG0280009756.01.T01:three_prime_utr;Parent=MsG0280009756.01.T01
Gene Sequence

>MsG0280009756.01.T01

ATGGCGAACGAGGTAATTCTGTTAGATACATGGGCTAGCATGTTTGGTATGAGAGCAAGAATTGCATTAGCTGAAAAGAGTGTCAAATATGAGTACAAAGAAGAAGATCTTAGAAATAAGAGTCCTTTACTTCTTCAGATGAATCCAATTCATAAGAAGATTCCAGTTCTTATCCATAATGGTAAATCCATTTGTGAATCTGCAATTATTGTGCAGTACATAGATGAAGTTTGGAATGATAAAGCTTCATTCATGCCTTCTAATCCTTATGAGAGAGCTCAAGCTAGATTTTGGGTTGATTATAGTGACAAAAAGGTTTATGACACTTGGAAGAAAATGTGGCTTTCAAAAGGAGAAGAATATGAGGAAGGGAAGATGGAATTGATCTCTATCTTTAAGACACTAGAGGGTGTATTGAGTGACAAGCTTTTTTATGGTGGTGACACATTTGGGTTTCTTGATATTGGTTTGATTCCTTTTTATAGCTGGTTTTATGCTTTTGAGACATATGGCAACTTCAAAATGGAAACGGAGTGTCCTAAACTAATGGCTTGGACCAAGAGATGCATGGAGAGAGATAGTGTGTCAAAATCTCTTCCTGATCAGAAGAAAGTGTATGATTTTGTTGTGAGCATTAAGAAAGTACTTGGATTCGATTAG

Protein sequence

>MsG0280009756.01.T01

MANEVILLDTWASMFGMRARIALAEKSVKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKSICESAIIVQYIDEVWNDKASFMPSNPYERAQARFWVDYSDKKVYDTWKKMWLSKGEEYEEGKMELISIFKTLEGVLSDKLFYGGDTFGFLDIGLIPFYSWFYAFETYGNFKMETECPKLMAWTKRCMERDSVSKSLPDQKKVYDFVVSIKKVLGFD*