AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009757.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009757.01.T01 MTR_2g070070 95.434 219 10 0 37 255 1 219 1.77e-148 413
MsG0280009757.01.T01 MTR_2g070060 89.041 219 24 0 37 255 1 219 1.70e-147 411
MsG0280009757.01.T01 MTR_2g070110 88.584 219 24 1 37 255 1 218 1.06e-135 381
MsG0280009757.01.T01 MTR_2g070180 65.888 214 73 0 37 250 1 214 2.83e-110 317
MsG0280009757.01.T01 MTR_2g070130 62.557 219 82 0 37 255 1 219 1.52e-107 310
MsG0280009757.01.T01 MTR_2g070150 67.647 204 66 0 37 240 1 204 2.76e-107 308
MsG0280009757.01.T01 MTR_8g056940 65.297 219 76 0 37 255 1 219 4.59e-105 303
MsG0280009757.01.T01 MTR_2g070140 65.517 203 70 0 53 255 1 203 4.98e-105 303
MsG0280009757.01.T01 MTR_2g070210 61.538 221 83 1 37 255 1 221 9.38e-103 298
MsG0280009757.01.T01 MTR_3g467420 60.829 217 85 0 39 255 8 224 2.35e-101 294
MsG0280009757.01.T01 MTR_2g070200 60.909 220 84 2 37 254 1 220 5.36e-99 288
MsG0280009757.01.T01 MTR_3g467430 60.369 217 86 0 39 255 8 224 7.03e-98 285
MsG0280009757.01.T01 MTR_4g124130 61.364 220 84 1 37 255 1 220 2.28e-97 284
MsG0280009757.01.T01 MTR_2g070120 57.416 209 89 0 37 245 1 209 7.96e-88 260
MsG0280009757.01.T01 MTR_5g076900 52.968 219 101 2 38 255 4 221 6.93e-78 234
MsG0280009757.01.T01 MTR_0186s0030 66.667 141 47 0 37 177 1 141 2.25e-64 197
MsG0280009757.01.T01 MTR_5g037380 40.265 226 126 3 36 252 1 226 7.78e-50 163
MsG0280009757.01.T01 MTR_5g040430 36.323 223 132 3 38 253 5 224 4.16e-47 156
MsG0280009757.01.T01 MTR_8g087425 41.429 210 116 5 38 242 3 210 1.74e-45 152
MsG0280009757.01.T01 MTR_1g090060 41.509 212 115 4 40 245 3 211 5.56e-45 151
MsG0280009757.01.T01 MTR_4g019780 36.744 215 131 4 33 244 1 213 6.34e-43 145
MsG0280009757.01.T01 MTR_1g090070 40.741 216 120 5 36 245 5 218 1.34e-42 145
MsG0280009757.01.T01 MTR_4g019790 41.038 212 120 4 39 247 6 215 2.00e-42 144
MsG0280009757.01.T01 MTR_2g072120 91.304 69 6 0 83 151 1 69 2.79e-42 139
MsG0280009757.01.T01 MTR_8g087410 39.906 213 120 6 36 242 1 211 1.51e-41 142
MsG0280009757.01.T01 MTR_7g065630 36.866 217 128 5 40 253 25 235 8.83e-41 140
MsG0280009757.01.T01 MTR_7g065750 40.796 201 113 4 40 236 7 205 2.20e-40 139
MsG0280009757.01.T01 MTR_8g061950 38.679 212 121 4 39 241 4 215 2.42e-40 139
MsG0280009757.01.T01 MTR_7g065660 39.614 207 120 4 41 244 8 212 3.79e-40 138
MsG0280009757.01.T01 MTR_4g059730 38.636 220 122 6 37 248 1 215 8.04e-40 137
MsG0280009757.01.T01 MTR_7g065720 36.866 217 131 4 40 252 7 221 1.22e-39 137
MsG0280009757.01.T01 MTR_6g080440 37.915 211 122 6 39 244 2 208 1.25e-39 137
MsG0280009757.01.T01 MTR_1g090100 41.584 202 113 3 47 244 9 209 2.75e-39 136
MsG0280009757.01.T01 MTR_1g090090 40.670 209 119 4 40 244 3 210 7.80e-39 135
MsG0280009757.01.T01 MTR_7g065740 37.799 209 124 4 40 244 7 213 1.97e-38 134
MsG0280009757.01.T01 MTR_7g065710 36.493 211 125 5 37 244 1 205 1.67e-37 131
MsG0280009757.01.T01 MTR_3g099757 37.500 216 132 3 39 252 4 218 2.45e-37 131
MsG0280009757.01.T01 MTR_7g065590 36.574 216 132 4 40 252 7 220 3.33e-37 130
MsG0280009757.01.T01 MTR_1g090150 36.652 221 126 6 40 252 3 217 2.79e-36 128
MsG0280009757.01.T01 MTR_7g065230 40.000 200 110 5 40 236 7 199 3.78e-35 125
MsG0280009757.01.T01 MTR_7g065270 38.500 200 118 4 40 236 7 204 4.12e-35 125
MsG0280009757.01.T01 MTR_7g065265 37.981 208 124 4 40 244 7 212 4.54e-35 125
MsG0280009757.01.T01 MTR_7g065680 35.484 217 131 5 40 253 7 217 7.32e-35 124
MsG0280009757.01.T01 MTR_7g065600 38.191 199 118 4 41 236 8 204 4.55e-34 122
MsG0280009757.01.T01 MTR_7g065290 37.500 208 125 4 40 244 7 212 1.74e-33 121
MsG0280009757.01.T01 MTR_7g065700 36.842 209 127 5 37 244 4 208 6.93e-33 120
MsG0280009757.01.T01 MTR_7g065640 36.275 204 113 4 41 244 8 194 1.74e-32 118
MsG0280009757.01.T01 MTR_1g115195 35.885 209 124 5 40 241 3 208 2.05e-32 118
MsG0280009757.01.T01 MTR_7g065260 37.089 213 126 5 34 240 5 215 6.83e-30 112
MsG0280009757.01.T01 MTR_5g037390 42.045 88 49 1 64 149 11 98 6.80e-14 66.2
MsG0280009757.01.T01 MTR_4g043640 65.000 40 14 0 186 225 46 85 1.39e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009757.01.T01 AT1G17180 64.840 219 77 0 37 255 1 219 3.79e-110 317
MsG0280009757.01.T01 AT1G78380 67.130 216 71 0 37 252 1 216 2.15e-109 315
MsG0280009757.01.T01 AT1G78370 63.256 215 79 0 37 251 1 215 3.85e-103 299
MsG0280009757.01.T01 AT1G78360 63.636 220 79 1 37 255 1 220 1.25e-101 295
MsG0280009757.01.T01 AT1G17170 63.014 219 80 1 37 255 1 218 3.50e-101 294
MsG0280009757.01.T01 AT1G78340 61.682 214 82 0 37 250 1 214 1.17e-99 290
MsG0280009757.01.T01 AT1G78320 61.364 220 84 1 37 255 1 220 4.93e-96 281
MsG0280009757.01.T01 AT1G17190 60.092 218 86 1 37 253 1 218 6.65e-95 278
MsG0280009757.01.T01 AT1G53680 56.164 219 94 2 39 255 6 224 4.72e-90 266
MsG0280009757.01.T01 AT3G43800 53.704 216 96 3 40 251 5 220 1.05e-81 244
MsG0280009757.01.T01 AT1G78320 53.182 220 75 2 37 255 1 193 5.09e-76 229
MsG0280009757.01.T01 AT1G10360 42.661 218 116 5 37 245 1 218 2.09e-52 170
MsG0280009757.01.T01 AT1G59700 43.694 222 110 5 40 249 6 224 2.65e-50 165
MsG0280009757.01.T01 AT1G59670 45.872 218 103 5 40 245 6 220 2.73e-48 160
MsG0280009757.01.T01 AT3G09270 40.758 211 122 2 41 248 7 217 3.49e-47 156
MsG0280009757.01.T01 AT2G29420 41.379 203 116 3 38 238 7 208 6.18e-47 156
MsG0280009757.01.T01 AT1G10370 40.724 221 117 5 36 245 1 218 6.45e-47 156
MsG0280009757.01.T01 AT1G74590 42.188 192 105 3 39 224 6 197 3.76e-45 152
MsG0280009757.01.T01 AT1G69930 39.151 212 122 3 41 245 13 224 9.76e-42 143
MsG0280009757.01.T01 AT2G29490 37.674 215 130 2 41 252 8 221 2.58e-41 141
MsG0280009757.01.T01 AT1G27140 39.631 217 121 4 39 245 5 221 2.13e-40 140
MsG0280009757.01.T01 AT1G27130 38.356 219 120 5 39 245 5 220 2.27e-40 139
MsG0280009757.01.T01 AT2G29450 40.488 205 109 6 40 236 6 205 3.16e-39 136
MsG0280009757.01.T01 AT2G29480 40.976 205 113 6 41 240 8 209 4.20e-39 135
MsG0280009757.01.T01 AT2G29470 38.537 205 119 5 41 240 8 210 6.31e-39 135
MsG0280009757.01.T01 AT2G29440 38.462 221 122 6 40 252 6 220 6.38e-39 135
MsG0280009757.01.T01 AT5G62480 34.222 225 136 5 37 250 5 228 8.10e-39 135
MsG0280009757.01.T01 AT2G29460 40.394 203 113 6 39 236 6 205 8.12e-39 135
MsG0280009757.01.T01 AT1G69920 36.574 216 124 5 41 245 35 248 2.14e-37 132
MsG0280009757.01.T01 AT5G62480 28.444 225 122 6 37 250 5 201 4.43e-22 91.3
MsG0280009757.01.T01 AT5G62480 28.444 225 123 6 37 250 5 202 5.76e-22 90.9

Find 58 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGCTCAAGCTAGATTT+TGG 0.158333 2:+57658060 MsG0280009757.01.T01:CDS
ACTAAATAACTCACACTATT+TGG 0.180598 2:+57659236 MsG0280009757.01.T01:three_prime_UTR
AGCATAAAACCAGCTGTAAA+AGG 0.226180 2:-57658838 None:intergenic
GGTTGATTATATTGACAAAA+AGG 0.226748 2:+57658082 MsG0280009757.01.T01:CDS
ATTCCAGTTCTTATTCATAA+TGG 0.270694 2:+57657948 MsG0280009757.01.T01:CDS
CATGAAGAAAACACTTGGTT+TGG 0.291507 2:+57658995 MsG0280009757.01.T01:CDS
ATAATTGCAGATTCACAAAT+AGG 0.302069 2:-57657975 None:intergenic
TGCAGTATATAGATGAAGTT+TGG 0.305831 2:+57658000 MsG0280009757.01.T01:CDS
GACATATGGTAACTTTAAAA+TGG 0.308392 2:+57658866 MsG0280009757.01.T01:CDS
ATCTAATCTAAGTGAATTAT+AGG 0.310647 2:-57657748 None:intergenic
CTTGGTTTGGATTAGAGATT+AGG 0.325473 2:+57659008 MsG0280009757.01.T01:exon
AGGAGTGATGAATGTTATTA+TGG 0.332278 2:+57659179 MsG0280009757.01.T01:three_prime_UTR
AAGACACTAGAGGAAACTTT+AGG 0.341946 2:+57658759 MsG0280009757.01.T01:CDS
GCATGTTTGGTATGAGGGTT+AGG 0.343737 2:+57657826 MsG0280009757.01.T01:CDS
CTCTTTCTCCAAACATCTCT+TGG 0.346478 2:-57658919 None:intergenic
AAAGTGGCACCACCGTAAAA+AGG 0.374250 2:-57658789 None:intergenic
GATACATGGCCTAGCATGTT+TGG 0.374420 2:+57657813 MsG0280009757.01.T01:CDS
GGCCTAGCATGTTTGGTATG+AGG 0.389766 2:+57657820 MsG0280009757.01.T01:CDS
CTAGCTTGAGCTCTCTCATA+AGG 0.392919 2:-57658053 None:intergenic
AGATATAAGATATTATACTA+TGG 0.397337 2:+57659111 MsG0280009757.01.T01:three_prime_UTR
TTTAGTGATTTCTACAATCA+TGG 0.407048 2:+57657770 MsG0280009757.01.T01:CDS
TTTCCATTATGAATAAGAAC+TGG 0.412827 2:-57657951 None:intergenic
TCATACACCTTCATTTGATC+AGG 0.418180 2:-57658960 None:intergenic
TTAAATATGATATTGCAATA+AGG 0.419484 2:+57659063 MsG0280009757.01.T01:three_prime_UTR
ACTTGAGTGTGTCTACAATA+TGG 0.422118 2:+57659144 MsG0280009757.01.T01:three_prime_UTR
GCATAAAACCAGCTGTAAAA+GGG 0.445528 2:-57658837 None:intergenic
AGGAAAATGTGGCTTTCAAA+AGG 0.453535 2:+57658693 MsG0280009757.01.T01:CDS
TTGGCCCATGCCATCAGCTT+AGG 0.461650 2:-57658900 None:intergenic
GCCTAGCATGTTTGGTATGA+GGG 0.468751 2:+57657821 MsG0280009757.01.T01:CDS
GGCATGGGCCAAGAGATGTT+TGG 0.489429 2:+57658911 MsG0280009757.01.T01:CDS
CGGATCAAGGTTGTGTGATG+TGG 0.492255 2:-57657587 None:intergenic
GAATGTAGGTGTATGATACT+TGG 0.493096 2:+57658670 MsG0280009757.01.T01:intron
AACTCTTCCTGATCAAATGA+AGG 0.495473 2:+57658953 MsG0280009757.01.T01:CDS
GACATTCACTAGACAATCTC+CGG 0.514599 2:-57657607 None:intergenic
CACATCACACAACCTTGATC+CGG 0.523325 2:+57657588 MsG0280009757.01.T01:CDS
TGGTAACTTTAAAATGGAAG+TGG 0.524339 2:+57658872 MsG0280009757.01.T01:CDS
TAGCTTGAGCTCTCTCATAA+GGG 0.529940 2:-57658052 None:intergenic
GGATTCATCTGAAGAAGTAA+AGG 0.531810 2:-57657912 None:intergenic
ACTAGACAATCTCCGGATCA+AGG 0.533906 2:-57657600 None:intergenic
AATATCAAGAAAGCCAAAAG+TGG 0.548628 2:-57658805 None:intergenic
GTGTCCTAAGCTGATGGCAT+GGG 0.573537 2:+57658896 MsG0280009757.01.T01:CDS
TCAGATAGTCTAGATGTGTT+CGG 0.577056 2:+57657553 None:intergenic
AAAGGTGAAGAGCATGAGGA+AGG 0.578570 2:+57658711 MsG0280009757.01.T01:CDS
AAGGTGAAGAGCATGAGGAA+GGG 0.585110 2:+57658712 MsG0280009757.01.T01:CDS
AGTGTCCTAAGCTGATGGCA+TGG 0.588846 2:+57658895 MsG0280009757.01.T01:CDS
CATAAAACCAGCTGTAAAAG+GGG 0.600460 2:-57658836 None:intergenic
GCTCTCTCATAAGGGTGAGA+AGG 0.602075 2:-57658044 None:intergenic
TACAATCATGGCAAACGAGG+TGG 0.606147 2:+57657782 MsG0280009757.01.T01:CDS
GTGAGCATGAAGAAAACACT+TGG 0.623270 2:+57658990 MsG0280009757.01.T01:CDS
CTCTATCTTTAAGACACTAG+AGG 0.627375 2:+57658749 MsG0280009757.01.T01:CDS
GGATCAAGGTTGTGTGATGT+GGG 0.631325 2:-57657586 None:intergenic
TTCAAAAGGTGAAGAGCATG+AGG 0.635141 2:+57658707 MsG0280009757.01.T01:CDS
CAATATGGTATTTGATACAG+AGG 0.638682 2:+57659159 MsG0280009757.01.T01:three_prime_UTR
ATGATACTTGGAGGAAAATG+TGG 0.639144 2:+57658682 MsG0280009757.01.T01:CDS
ACCCTCATACCAAACATGCT+AGG 0.644205 2:-57657822 None:intergenic
TTCTACAATCATGGCAAACG+AGG 0.652977 2:+57657779 MsG0280009757.01.T01:CDS
AGTGGAGTGTCCTAAGCTGA+TGG 0.664603 2:+57658890 MsG0280009757.01.T01:CDS
TGTAGGTGTATGATACTTGG+AGG 0.669059 2:+57658673 MsG0280009757.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATATAAGATATTATACTA+TGG + Chr2:57659111-57659130 MsG0280009757.01.T01:three_prime_UTR 15.0%
!! TTAAATATGATATTGCAATA+AGG + Chr2:57659063-57659082 MsG0280009757.01.T01:three_prime_UTR 15.0%
!!! ATAATTTTCATCCTTAATTT+TGG + Chr2:57658127-57658146 MsG0280009757.01.T01:intron 15.0%
!!! TTTTTTTACCTAATATTTGA+AGG - Chr2:57657668-57657687 None:intergenic 15.0%
!! ATCTAATCTAAGTGAATTAT+AGG - Chr2:57657751-57657770 None:intergenic 20.0%
!! TAAGATCAAGAATGATTATT+TGG - Chr2:57658615-57658634 None:intergenic 20.0%
!! TGGATAAACAATTTACTTAA+AGG - Chr2:57658595-57658614 None:intergenic 20.0%
!! TTCTATATCCTTCAAATATT+AGG + Chr2:57657657-57657676 MsG0280009757.01.T01:intron 20.0%
!!! TCATTATTGATTTTGAATGT+AGG + Chr2:57658656-57658675 MsG0280009757.01.T01:intron 20.0%
! AAAATTAGCAGTGTTTATCA+TGG - Chr2:57658207-57658226 None:intergenic 25.0%
! ACTAAATAACTCACACTATT+TGG + Chr2:57659236-57659255 MsG0280009757.01.T01:three_prime_UTR 25.0%
! ATAATTGCAGATTCACAAAT+AGG - Chr2:57657978-57657997 None:intergenic 25.0%
! ATAGCACAAAAATTACCAAA+AGG - Chr2:57658247-57658266 None:intergenic 25.0%
! ATATTCTCAAATGTTCTAGT+TGG - Chr2:57657638-57657657 None:intergenic 25.0%
! ATTCCAGTTCTTATTCATAA+TGG + Chr2:57657948-57657967 MsG0280009757.01.T01:CDS 25.0%
! GGTTGATTATATTGACAAAA+AGG + Chr2:57658082-57658101 MsG0280009757.01.T01:CDS 25.0%
! TTTAGTGATTTCTACAATCA+TGG + Chr2:57657770-57657789 MsG0280009757.01.T01:CDS 25.0%
! TTTCCATTATGAATAAGAAC+TGG - Chr2:57657954-57657973 None:intergenic 25.0%
!! ACTGGAATTTTCTTATGAAT+TGG - Chr2:57657936-57657955 None:intergenic 25.0%
!! ATAAACACTGCTAATTTTTG+TGG + Chr2:57658209-57658228 MsG0280009757.01.T01:intron 25.0%
!! ATTTTCATCCTTAATTTTGG+TGG + Chr2:57658130-57658149 MsG0280009757.01.T01:intron 25.0%
!! GACATATGGTAACTTTAAAA+TGG + Chr2:57658866-57658885 MsG0280009757.01.T01:CDS 25.0%
!! TCTAGACTTTTGAATGTATT+TGG - Chr2:57658452-57658471 None:intergenic 25.0%
!! TTTTATGCTTATGAGACATA+TGG + Chr2:57658852-57658871 MsG0280009757.01.T01:CDS 25.0%
!!! TGAGAGGATTAACAATTTTT+TGG - Chr2:57658408-57658427 None:intergenic 25.0%
!!! TTTTCATCCTTAATTTTGGT+GGG + Chr2:57658131-57658150 MsG0280009757.01.T01:intron 25.0%
AATATCAAGAAAGCCAAAAG+TGG - Chr2:57658808-57658827 None:intergenic 30.0%
AATTGTTAATCCTCTCATGA+CGG + Chr2:57658411-57658430 MsG0280009757.01.T01:intron 30.0%
AGGAGTGATGAATGTTATTA+TGG + Chr2:57659179-57659198 MsG0280009757.01.T01:three_prime_UTR 30.0%
ATCAAAACCCACCAAAATTA+AGG - Chr2:57658141-57658160 None:intergenic 30.0%
CAATATGGTATTTGATACAG+AGG + Chr2:57659159-57659178 MsG0280009757.01.T01:three_prime_UTR 30.0%
TGCAGTATATAGATGAAGTT+TGG + Chr2:57658000-57658019 MsG0280009757.01.T01:CDS 30.0%
! CATGTTATTTATAAAGCTCG+TGG - Chr2:57657702-57657721 None:intergenic 30.0%
! TTTGAATGTATTTGGAGCTT+AGG - Chr2:57658444-57658463 None:intergenic 30.0%
!! TGGTAACTTTAAAATGGAAG+TGG + Chr2:57658872-57658891 MsG0280009757.01.T01:CDS 30.0%
!! TGGTAGATATTTTTGCCTTT+TGG + Chr2:57658229-57658248 MsG0280009757.01.T01:intron 30.0%
!!! ACTTTTGGCTTTCTTGATAT+TGG + Chr2:57658807-57658826 MsG0280009757.01.T01:CDS 30.0%
AACTCTTCCTGATCAAATGA+AGG + Chr2:57658953-57658972 MsG0280009757.01.T01:CDS 35.0%
AAGACACTAGAGGAAACTTT+AGG + Chr2:57658759-57658778 MsG0280009757.01.T01:CDS 35.0%
ACTTGAGTGTGTCTACAATA+TGG + Chr2:57659144-57659163 MsG0280009757.01.T01:three_prime_UTR 35.0%
AGCATAAAACCAGCTGTAAA+AGG - Chr2:57658841-57658860 None:intergenic 35.0%
AGGAAAATGTGGCTTTCAAA+AGG + Chr2:57658693-57658712 MsG0280009757.01.T01:CDS 35.0%
ATGATACTTGGAGGAAAATG+TGG + Chr2:57658682-57658701 MsG0280009757.01.T01:CDS 35.0%
CATAAAACCAGCTGTAAAAG+GGG - Chr2:57658839-57658858 None:intergenic 35.0%
CATGAAGAAAACACTTGGTT+TGG + Chr2:57658995-57659014 MsG0280009757.01.T01:CDS 35.0%
GAATGTAGGTGTATGATACT+TGG + Chr2:57658670-57658689 MsG0280009757.01.T01:intron 35.0%
GCATAAAACCAGCTGTAAAA+GGG - Chr2:57658840-57658859 None:intergenic 35.0%
GGATTCATCTGAAGAAGTAA+AGG - Chr2:57657915-57657934 None:intergenic 35.0%
TCATACACCTTCATTTGATC+AGG - Chr2:57658963-57658982 None:intergenic 35.0%
! TCAAATGTTCTAGTTGGACA+GGG - Chr2:57657632-57657651 None:intergenic 35.0%
! TTAGGTGACAAGCCTTTTTA+CGG + Chr2:57658777-57658796 MsG0280009757.01.T01:CDS 35.0%
!! CTCTATCTTTAAGACACTAG+AGG + Chr2:57658749-57658768 MsG0280009757.01.T01:CDS 35.0%
!! CTTGGTTTGGATTAGAGATT+AGG + Chr2:57659008-57659027 MsG0280009757.01.T01:exon 35.0%
CTCTTTCTCCAAACATCTCT+TGG - Chr2:57658922-57658941 None:intergenic 40.0%
GACATTCACTAGACAATCTC+CGG - Chr2:57657610-57657629 None:intergenic 40.0%
GTGAGCATGAAGAAAACACT+TGG + Chr2:57658990-57659009 MsG0280009757.01.T01:CDS 40.0%
TAGCTTGAGCTCTCTCATAA+GGG - Chr2:57658055-57658074 None:intergenic 40.0%
TGTAGGTGTATGATACTTGG+AGG + Chr2:57658673-57658692 MsG0280009757.01.T01:intron 40.0%
TTCTACAATCATGGCAAACG+AGG + Chr2:57657779-57657798 MsG0280009757.01.T01:CDS 40.0%
! AGAGAGCTCAAGCTAGATTT+TGG + Chr2:57658060-57658079 MsG0280009757.01.T01:CDS 40.0%
! CTCAAATGTTCTAGTTGGAC+AGG - Chr2:57657633-57657652 None:intergenic 40.0%
! GAGAGCTCAAGCTAGATTTT+GGG + Chr2:57658061-57658080 MsG0280009757.01.T01:CDS 40.0%
! TTCAAAAGGTGAAGAGCATG+AGG + Chr2:57658707-57658726 MsG0280009757.01.T01:CDS 40.0%
!!! AGGTGGTTTTGTTGGATACA+TGG + Chr2:57657799-57657818 MsG0280009757.01.T01:CDS 40.0%
AAAGTGGCACCACCGTAAAA+AGG - Chr2:57658792-57658811 None:intergenic 45.0%
ACCCTCATACCAAACATGCT+AGG - Chr2:57657825-57657844 None:intergenic 45.0%
ACTAGACAATCTCCGGATCA+AGG - Chr2:57657603-57657622 None:intergenic 45.0%
CACATCACACAACCTTGATC+CGG + Chr2:57657588-57657607 MsG0280009757.01.T01:CDS 45.0%
CTAGCTTGAGCTCTCTCATA+AGG - Chr2:57658056-57658075 None:intergenic 45.0%
GATACATGGCCTAGCATGTT+TGG + Chr2:57657813-57657832 MsG0280009757.01.T01:CDS 45.0%
GCATGTTTGGTATGAGGGTT+AGG + Chr2:57657826-57657845 MsG0280009757.01.T01:CDS 45.0%
GCCTAGCATGTTTGGTATGA+GGG + Chr2:57657821-57657840 MsG0280009757.01.T01:CDS 45.0%
GGATCAAGGTTGTGTGATGT+GGG - Chr2:57657589-57657608 None:intergenic 45.0%
TACAATCATGGCAAACGAGG+TGG + Chr2:57657782-57657801 MsG0280009757.01.T01:CDS 45.0%
! AAAGGTGAAGAGCATGAGGA+AGG + Chr2:57658711-57658730 MsG0280009757.01.T01:CDS 45.0%
! AAGGTGAAGAGCATGAGGAA+GGG + Chr2:57658712-57658731 MsG0280009757.01.T01:CDS 45.0%
!! GTTGTCTCAGAAAGTGTCAC+AGG - Chr2:57658338-57658357 None:intergenic 45.0%
!!! TTTTACGGTGGTGCCACTTT+TGG + Chr2:57658792-57658811 MsG0280009757.01.T01:CDS 45.0%
!! TATAAATTATAAATATATAG+AGG - Chr2:57658496-57658515 None:intergenic 5.0%
AGGTAGTTGTCCGTCATGAG+AGG - Chr2:57658424-57658443 None:intergenic 50.0%
AGTGTCCTAAGCTGATGGCA+TGG + Chr2:57658895-57658914 MsG0280009757.01.T01:CDS 50.0%
CGGATCAAGGTTGTGTGATG+TGG - Chr2:57657590-57657609 None:intergenic 50.0%
GCTCTCTCATAAGGGTGAGA+AGG - Chr2:57658047-57658066 None:intergenic 50.0%
GGCCTAGCATGTTTGGTATG+AGG + Chr2:57657820-57657839 MsG0280009757.01.T01:CDS 50.0%
GTGTCCTAAGCTGATGGCAT+GGG + Chr2:57658896-57658915 MsG0280009757.01.T01:CDS 50.0%
! AGTGGAGTGTCCTAAGCTGA+TGG + Chr2:57658890-57658909 MsG0280009757.01.T01:CDS 50.0%
! GACTGATCCCCTTTTACAGC+TGG + Chr2:57658829-57658848 MsG0280009757.01.T01:CDS 50.0%
! GGTGACAAGCCTTTTTACGG+TGG + Chr2:57658780-57658799 MsG0280009757.01.T01:CDS 50.0%
!!! GGCAAACGAGGTGGTTTTGT+TGG + Chr2:57657791-57657810 MsG0280009757.01.T01:CDS 50.0%
GGCATGGGCCAAGAGATGTT+TGG + Chr2:57658911-57658930 MsG0280009757.01.T01:CDS 55.0%
TTGGCCCATGCCATCAGCTT+AGG - Chr2:57658903-57658922 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 57657566 57659278 57657566 ID=MsG0280009757.01;Name=MsG0280009757.01
Chr2 mRNA 57657566 57659278 57657566 ID=MsG0280009757.01.T01;Parent=MsG0280009757.01;Name=MsG0280009757.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0.5|0.33|1|0.5|0.33|3|256|255
Chr2 exon 57657566 57657626 57657566 ID=MsG0280009757.01.T01:exon:6108;Parent=MsG0280009757.01.T01
Chr2 exon 57657742 57658103 57657742 ID=MsG0280009757.01.T01:exon:6109;Parent=MsG0280009757.01.T01
Chr2 exon 57658678 57659278 57658678 ID=MsG0280009757.01.T01:exon:6110;Parent=MsG0280009757.01.T01
Chr2 CDS 57657566 57657626 57657566 ID=MsG0280009757.01.T01:cds;Parent=MsG0280009757.01.T01
Chr2 CDS 57657742 57658103 57657742 ID=MsG0280009757.01.T01:cds;Parent=MsG0280009757.01.T01
Chr2 CDS 57658678 57659022 57658678 ID=MsG0280009757.01.T01:cds;Parent=MsG0280009757.01.T01
Chr2 three_prime_UTR 57659023 57659278 57659023 ID=MsG0280009757.01.T01:three_prime_utr;Parent=MsG0280009757.01.T01
Gene Sequence

>MsG0280009757.01.T01

ATGTGTTCGGTGACAGTCGTCCCACATCACACAACCTTGATCCGGAGATTGTCTAGTGAATTGACAACCTATAATTCACTTAGATTAGATTTAGTGATTTCTACAATCATGGCAAACGAGGTGGTTTTGTTGGATACATGGCCTAGCATGTTTGGTATGAGGGTTAGGATTGCATTAGCTGAAAAGAGTGTCAAATATGAGTACAAAGAAGAAGATCTTAGAAATAAGAGTCCTTTACTTCTTCAGATGAATCCAATTCATAAGAAAATTCCAGTTCTTATTCATAATGGAAAACCTATTTGTGAATCTGCAATTATTGTGCAGTATATAGATGAAGTTTGGAATGATAAAGCTTCATTCATGCCTTCTCACCCTTATGAGAGAGCTCAAGCTAGATTTTGGGTTGATTATATTGACAAAAAGGTGTATGATACTTGGAGGAAAATGTGGCTTTCAAAAGGTGAAGAGCATGAGGAAGGGAAGAAAGAATTGATCTCTATCTTTAAGACACTAGAGGAAACTTTAGGTGACAAGCCTTTTTACGGTGGTGCCACTTTTGGCTTTCTTGATATTGGACTGATCCCCTTTTACAGCTGGTTTTATGCTTATGAGACATATGGTAACTTTAAAATGGAAGTGGAGTGTCCTAAGCTGATGGCATGGGCCAAGAGATGTTTGGAGAAAGAGAGTGTTTCAAAAACTCTTCCTGATCAAATGAAGGTGTATGATTTTGTTGTGAGCATGAAGAAAACACTTGGTTTGGATTAG

Protein sequence

>MsG0280009757.01.T01

MCSVTVVPHHTTLIRRLSSELTTYNSLRLDLVISTIMANEVVLLDTWPSMFGMRVRIALAEKSVKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKASFMPSHPYERAQARFWVDYIDKKVYDTWRKMWLSKGEEHEEGKKELISIFKTLEETLGDKPFYGGATFGFLDIGLIPFYSWFYAYETYGNFKMEVECPKLMAWAKRCLEKESVSKTLPDQMKVYDFVVSMKKTLGLD*