AlfalfaGEDB | MsG0280010149.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010149.01

KEGG: -
GO: -
PFAM: PF11282

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010149.01.T01	XP_013464631.1	79.803	203	13	5	1	194	1	184	4.67E-90	278

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010149.01.T01	A0A072VAN1	79.803	203	13	5	1	194	1	184	2.23e-90	278

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0280010149.01	-0.821056	4.944100e-53	3.980331e-50
MsG0080047910.01	MsG0280010149.01	0.816194	6.271872e-52	4.414625e-49
MsG0080047967.01	MsG0280010149.01	0.851993	6.179732e-61	1.272837e-57
MsG0080048036.01	MsG0280010149.01	-0.836299	1.014937e-56	1.273932e-53
MsG0080048059.01	MsG0280010149.01	0.907467	4.912583e-81	8.725335e-77
MsG0080048202.01	MsG0280010149.01	-0.832964	7.000477e-56	7.948394e-53
MsG0080048486.01	MsG0280010149.01	-0.802319	5.936258e-49	2.899267e-46
MsG0080048488.01	MsG0280010149.01	-0.806725	7.153881e-50	3.911621e-47
MsG0080048489.01	MsG0280010149.01	-0.805644	1.208248e-49	6.426311e-47
MsG0080048528.01	MsG0280010149.01	0.808495	3.010964e-50	1.724196e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010149.01.T01	MTR_2g078540	79.803	203	13	5	1	194	1	184	5.65e-94	278
MsG0280010149.01.T01	MTR_6g042030	40.201	199	95	7	1	194	1	180	1.78e-27	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010149.01.T01	AT3G15110	46.411	209	79	7	1	194	1	191	2.36e-41	144

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Find 100 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACAGATACGGATAAA+AGG	0.308058	2:+65356236	None:intergenic
AACCGTTTGTTTGAGACGTT+TGG	0.359266	2:+65357163	None:intergenic
AAGAGATCGAAGCTACCTTA+CGG	0.583116	2:+65353294	None:intergenic
AAGAGTGGGATGGGAAGGTG+GGG	0.640872	2:+65357467	None:intergenic
AAGTCCACAGGATATTTATT+TGG	0.262672	2:-65357613	MsG0280010149.01.T01:five_prime_UTR
AATCGTCTGAAATTGTTTGC+CGG	0.417137	2:+65356285	None:intergenic
AATGCTTGAACAGGTGAAGG+TGG	0.599999	2:+65356383	None:intergenic
ACAACAATCACAACAGATGG+AGG	0.634223	2:-65357329	MsG0280010149.01.T01:CDS
ACCACAACAATCACAACAGA+TGG	0.556667	2:-65357332	MsG0280010149.01.T01:CDS
ACCTGTTCAAGCATTTCTCC+GGG	0.507909	2:-65356375	MsG0280010149.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAGAATGATGAACCA+TGG	+	Chr2:65355502-65355521	None:intergenic	30.0%
AAAAGACTGATCATTCGATT+TGG	+	Chr2:65354073-65354092	None:intergenic	30.0%
AAAGAACAGATACGGATAAA+AGG	+	Chr2:65354678-65354697	None:intergenic	30.0%
AAAGAAGAATGATGAACCAT+GGG	+	Chr2:65355501-65355520	None:intergenic	30.0%
AAGTCCACAGGATATTTATT+TGG	-	Chr2:65353298-65353317	MsG0280010149.01.T01:CDS	30.0%
AATTCATAATGCTGTTGCAT+AGG	+	Chr2:65354125-65354144	None:intergenic	30.0%
ACAACAACAACAACAATCAT+AGG	+	Chr2:65356063-65356082	None:intergenic	30.0%
ACTTAGCTTAATTACTAAGG+GGG	-	Chr2:65355273-65355292	MsG0280010149.01.T01:intron	30.0%
AGAATCATATGGGATTTCAA+TGG	+	Chr2:65353616-65353635	None:intergenic	30.0%
AGGTATCAAAATTGTGGATA+AGG	-	Chr2:65357158-65357177	MsG0280010149.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	65353259	65357674	65353259	ID=MsG0280010149.01;Name=MsG0280010149.01
Chr2	mRNA	65353259	65357674	65353259	ID=MsG0280010149.01.T01;Parent=MsG0280010149.01;Name=MsG0280010149.01.T01;_AED=0.48;_eAED=0.60;_QI=149\|0.33\|0.25\|1\|0\|0\|4\|0\|278
Chr2	exon	65353259	65353335	65353259	ID=MsG0280010149.01.T01:exon:14157;Parent=MsG0280010149.01.T01
Chr2	exon	65355731	65355851	65355731	ID=MsG0280010149.01.T01:exon:14156;Parent=MsG0280010149.01.T01
Chr2	exon	65356220	65356498	65356220	ID=MsG0280010149.01.T01:exon:14155;Parent=MsG0280010149.01.T01
Chr2	exon	65357166	65357674	65357166	ID=MsG0280010149.01.T01:exon:14154;Parent=MsG0280010149.01.T01
Chr2	five_prime_UTR	65357526	65357674	65357526	ID=MsG0280010149.01.T01:five_prime_utr;Parent=MsG0280010149.01.T01
Chr2	CDS	65357166	65357525	65357166	ID=MsG0280010149.01.T01:cds;Parent=MsG0280010149.01.T01
Chr2	CDS	65356220	65356498	65356220	ID=MsG0280010149.01.T01:cds;Parent=MsG0280010149.01.T01
Chr2	CDS	65355731	65355851	65355731	ID=MsG0280010149.01.T01:cds;Parent=MsG0280010149.01.T01
Chr2	CDS	65353259	65353335	65353259	ID=MsG0280010149.01.T01:cds;Parent=MsG0280010149.01.T01

Gene Sequence

>MsG0280010149.01.T01

ATGTTGCAGTCTCAGTGCCACAACCTTCTCTTCTCACCCCACCTTCCCATCCCACTCTTACATAAACATAAACCCTCTTTTCTCCACAGAACAAAACCCACTCCTTCTTTCTCAATTTCAGCCATTCCTTCTCTTTCAACATCATCATCATTCACATGGCTCGCTGATATCACCACAACAATCACAACAGATGGAGGAGATGGACCCATTGAAATCCCATATGATTCTACTCCTTCTCTTCTCTCCTCCACCGACGACCCTTCTTTCATCCAAATTGCTGCCAGTGTCCTCCTCACCGGTGCTATCTCCGTTCTCCTCTTCCGCTCCTTCCGCCGCAGGGCCAAACGTCTCAAACAAACGCAATTCAGGTCTTCAGGAGAGAAGTCAGTAAAGGAAGAAGCATTGGAGACTTTGAAAGCTATGGGGTCTGCTTCAATAGAGACTACTAAAGGTCCACCTTCACCTGTTCAAGCATTTCTCCGGGCAATATCAGCTGGTGTTATTTCTCTTATTTTGTATAAGTTCGCCACCATCATCGAGGCGGGTCTGAGCCGGCAAACAATTTCAGACGATTTCTCTGTATGTCTTCTCCTCTCATGTCCTTTTATCCGTATCTGTTCTTTTTTGTTTGCACATTATATAAAACGGGACGGAAGGAGTACAAAATATTGTCAAATAGTGACTATAGCGGGCAACAAGACTGTTGCGCAGAGGGATTTGAACAACCGTTACATTCTGCAATCTGTCATTGACAACACCGGCCCGCCAGATAACAATCACCGTAAGGTAGCTTCGATCTCTTATCAATCAGGGGTGATGCTATTCTTTTATTTTTAA

Protein sequence

>MsG0280010149.01.T01

MLQSQCHNLLFSPHLPIPLLHKHKPSFLHRTKPTPSFSISAIPSLSTSSSFTWLADITTTITTDGGDGPIEIPYDSTPSLLSSTDDPSFIQIAASVLLTGAISVLLFRSFRRRAKRLKQTQFRSSGEKSVKEEALETLKAMGSASIETTKGPPSPVQAFLRAISAGVISLILYKFATIIEAGLSRQTISDDFSVCLLLSCPFIRICSFLFAHYIKRDGRSTKYCQIVTIAGNKTVAQRDLNNRYILQSVIDNTGPPDNNHRKVASISYQSGVMLFFYF*