AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011079.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGAAAGCCAATGTAATT+TGG 0.167121 2:-79204730 MsG0280011079.01.T01:CDS
GGCATCGCCGTTGGAATTTC+AGG 0.231489 2:-79205878 MsG0280011079.01.T01:intron
GCCTTCATGTTGGCTTGTTC+TGG 0.231810 2:-79206121 MsG0280011079.01.T01:five_prime_UTR
AAAATAAGGAACGTGACTTT+AGG 0.272000 2:+79206448 None:intergenic
GTTTGGTCCTTGTTAAAATA+TGG 0.282576 2:-79206330 MsG0280011079.01.T01:five_prime_UTR
CTCCCCATTGGCGTAGGAAT+TGG 0.307896 2:-79205087 MsG0280011079.01.T01:CDS
TAATTGCAGTTGTCATGATT+TGG 0.312381 2:-79204876 MsG0280011079.01.T01:CDS
CTGGCATATAGACATGAAAA+TGG 0.312529 2:-79206534 None:intergenic
AAATAAGGAACGTGACTTTA+GGG 0.332603 2:+79206449 None:intergenic
AGAACATGAAATATAATAGA+AGG 0.337237 2:+79204687 None:intergenic
CCCTTCTGTTGTTGCGTCGA+TGG 0.338990 2:+79205059 None:intergenic
GGAACGTGACTTTAGGGCTT+TGG 0.339812 2:+79206455 None:intergenic
AAATTTACGTTCGAGGAGTT+TGG 0.351394 2:-79206347 MsG0280011079.01.T01:five_prime_UTR
TCGTTCCAACGGAAATAATA+AGG 0.363463 2:+79206263 None:intergenic
AGACTAAGAGACACAAAATA+AGG 0.372662 2:+79206434 None:intergenic
TCTATTAGGGAACAATTTGC+TGG 0.377941 2:-79206231 MsG0280011079.01.T01:five_prime_UTR
AATTGCAGTTGTCATGATTT+GGG 0.398612 2:-79204875 MsG0280011079.01.T01:CDS
ATCAATCATTTAATCTCTAA+AGG 0.405525 2:-79204971 MsG0280011079.01.T01:CDS
ATTCATGAAGACTACTATCT+TGG 0.411615 2:-79205950 MsG0280011079.01.T01:CDS
ATTCCAATTCCTACGCCAAT+GGG 0.436252 2:+79205084 None:intergenic
GAAAAGCATGGAGGAATTTG+TGG 0.439945 2:-79205224 MsG0280011079.01.T01:CDS
TGGCAAATATTGAACAAAAC+AGG 0.440244 2:+79204769 None:intergenic
TTCAATTCAATCAAAGCTCA+TGG 0.442939 2:-79206406 MsG0280011079.01.T01:five_prime_UTR
CAAGCCAACATGAAGGCAAA+AGG 0.443986 2:+79206127 None:intergenic
CGAACGTAAATTTATGTTGT+CGG 0.451852 2:+79206357 None:intergenic
TGTCTCCTTATTATTTCCGT+TGG 0.456903 2:-79206268 MsG0280011079.01.T01:five_prime_UTR
AGCTTTGATTGAATTGAAGA+AGG 0.475831 2:+79206411 None:intergenic
ACAACATAAATTTACGTTCG+AGG 0.488053 2:-79206354 MsG0280011079.01.T01:five_prime_UTR
AATTCCAATTCCTACGCCAA+TGG 0.495355 2:+79205083 None:intergenic
CATTTGCTATCTCTCCCCAT+TGG 0.498887 2:-79205099 MsG0280011079.01.T01:CDS
ACGTGACTTTAGGGCTTTGG+AGG 0.504033 2:+79206458 None:intergenic
AATTTATGTTGTCGGAGTCA+TGG 0.509180 2:+79206365 None:intergenic
CAATTAATGATCAGGTACTA+AGG 0.510991 2:-79205246 MsG0280011079.01.T01:intron
GATATTTGCTGCAATAGCAA+TGG 0.517861 2:-79205184 MsG0280011079.01.T01:CDS
ATATTTGCTGCAATAGCAAT+GGG 0.519706 2:-79205183 MsG0280011079.01.T01:CDS
ATCAAAGTTCCAAATTACAT+TGG 0.522162 2:+79204721 None:intergenic
CTATCTCTCCCCATTGGCGT+AGG 0.526603 2:-79205093 MsG0280011079.01.T01:CDS
ATAGTTCTACGTTACATACA+TGG 0.526823 2:-79206484 MsG0280011079.01.T01:five_prime_UTR
CAGAAGGGAGAACAGCGGAT+TGG 0.535719 2:-79205044 MsG0280011079.01.T01:CDS
CCACCACACATCACCAAACA+TGG 0.538182 2:+79206087 None:intergenic
AAGAGCCTTTCGACACTCCA+TGG 0.544723 2:-79204932 MsG0280011079.01.T01:CDS
GGTCGTTCCCTCTTCTCTTG+AGG 0.545853 2:+79206002 None:intergenic
GCCATCGACGCAACAACAGA+AGG 0.551024 2:-79205060 MsG0280011079.01.T01:CDS
GCTAAAGTTGAGGAACTTGA+AGG 0.551786 2:-79206035 MsG0280011079.01.T01:five_prime_UTR
TTGGATGTATGCAATATCAA+TGG 0.552069 2:-79205025 MsG0280011079.01.T01:CDS
AAGACATTAATAACAACAGC+AGG 0.556314 2:-79205133 MsG0280011079.01.T01:CDS
GCTCTCATCCATCGCCAACT+CGG 0.559618 2:+79205981 None:intergenic
ATTAGGGAACAATTTGCTGG+TGG 0.560827 2:-79206228 MsG0280011079.01.T01:five_prime_UTR
AAGCCAACATGAAGGCAAAA+GGG 0.565308 2:+79206128 None:intergenic
GGGAACGACCGAGTTGGCGA+TGG 0.565946 2:-79205989 MsG0280011079.01.T01:exon
CCATGTTTGGTGATGTGTGG+TGG 0.567639 2:-79206087 MsG0280011079.01.T01:five_prime_UTR
GAGAACACCTCAAGAGAAGA+GGG 0.576127 2:-79206009 MsG0280011079.01.T01:five_prime_UTR
GGAGAACACCTCAAGAGAAG+AGG 0.580890 2:-79206010 MsG0280011079.01.T01:five_prime_UTR
TAACCATGTTTGGTGATGTG+TGG 0.582065 2:-79206090 MsG0280011079.01.T01:five_prime_UTR
TCCAGAACAAGCCAACATGA+AGG 0.595290 2:+79206120 None:intergenic
AAGTTGAGGAACTTGAAGGA+GGG 0.602436 2:-79206031 MsG0280011079.01.T01:five_prime_UTR
TATGTTGTCGGAGTCATGGT+CGG 0.603695 2:+79206369 None:intergenic
TGTAACAAGTAATAATCAGA+GGG 0.605818 2:-79206060 MsG0280011079.01.T01:five_prime_UTR
CTAAACCATGGAGTGTCGAA+AGG 0.610561 2:+79204927 None:intergenic
AGAAGAGGGAACGACCGAGT+TGG 0.611188 2:-79205995 MsG0280011079.01.T01:five_prime_UTR
TCAGGTACTAAGGAAAAGCA+TGG 0.613029 2:-79205236 MsG0280011079.01.T01:intron
AAAGTTGAGGAACTTGAAGG+AGG 0.613893 2:-79206032 MsG0280011079.01.T01:five_prime_UTR
ATGTAACAAGTAATAATCAG+AGG 0.621888 2:-79206061 MsG0280011079.01.T01:five_prime_UTR
GTCGAAAGGCTCTTCCTCTG+CGG 0.624104 2:+79204941 None:intergenic
TTATTATTTCCGTTGGAACG+AGG 0.624370 2:-79206261 MsG0280011079.01.T01:five_prime_UTR
CCATCGACGCAACAACAGAA+GGG 0.642467 2:-79205059 MsG0280011079.01.T01:CDS
TCAGAGGGAAGCTAAAGTTG+AGG 0.644763 2:-79206045 MsG0280011079.01.T01:five_prime_UTR
AATATCAATGGTATTGCTTG+TGG 0.649508 2:-79205013 MsG0280011079.01.T01:CDS
CACAGCAAGAAACTAAACCA+TGG 0.666871 2:+79204915 None:intergenic
GAAATAACCTGAAATTCCAA+CGG 0.686017 2:+79205871 None:intergenic
CTAAAGGCTTCAAACCGCAG+AGG 0.686420 2:-79204955 MsG0280011079.01.T01:CDS
TTCCAATTCCTACGCCAATG+GGG 0.707571 2:+79205085 None:intergenic
AATTCAATCAAAGCTCATGG+AGG 0.725080 2:-79206403 MsG0280011079.01.T01:five_prime_UTR
GGTACTAAGGAAAAGCATGG+AGG 0.730708 2:-79205233 MsG0280011079.01.T01:CDS
AACAACAGAAGGGAGAACAG+CGG 0.747170 2:-79205049 MsG0280011079.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAGTTTACAAACAT+TGG + Chr2:79206442-79206461 None:intergenic 15.0%
!!! AATTTTACTATTCGTATATA+TGG + Chr2:79205568-79205587 None:intergenic 15.0%
!!! ATTTTACTATTCGTATATAT+GGG + Chr2:79205567-79205586 None:intergenic 15.0%
!! AGAACATGAAATATAATAGA+AGG + Chr2:79206504-79206523 None:intergenic 20.0%
!! ATATGCAATTTCATATTGAA+AGG + Chr2:79205858-79205877 None:intergenic 20.0%
!! ATCAATCATTTAATCTCTAA+AGG - Chr2:79206217-79206236 MsG0280011079.01.T01:five_prime_UTR 20.0%
!! CTAATATACAATTAATGATC+AGG - Chr2:79205934-79205953 MsG0280011079.01.T01:CDS 20.0%
!! TATGCAATTTCATATTGAAA+GGG + Chr2:79205857-79205876 None:intergenic 20.0%
!!! ATAGTCTTTTTCTTTTTTTC+GGG - Chr2:79205370-79205389 MsG0280011079.01.T01:intron 20.0%
!!! ATCAAAACCATATTTTAACA+AGG + Chr2:79204868-79204887 None:intergenic 20.0%
!!! ATTTTAAATAGCATCAAAGT+GGG - Chr2:79205664-79205683 MsG0280011079.01.T01:intron 20.0%
!!! GATAGTCTTTTTCTTTTTTT+CGG - Chr2:79205369-79205388 MsG0280011079.01.T01:intron 20.0%
!!! TATTTTAAATAGCATCAAAG+TGG - Chr2:79205663-79205682 MsG0280011079.01.T01:intron 20.0%
!!! TGTATATATGATGTGTTTTA+GGG - Chr2:79205691-79205710 MsG0280011079.01.T01:intron 20.0%
!!! TGTTGTTATTAATGTCTTTT+TGG + Chr2:79206053-79206072 None:intergenic 20.0%
! AAGAAAAAGACTATCAAGAA+AGG + Chr2:79205364-79205383 None:intergenic 25.0%
! AGAAAATTTGATCTTCACAT+GGG + Chr2:79205420-79205439 None:intergenic 25.0%
! ATCAAAGTTCCAAATTACAT+TGG + Chr2:79206470-79206489 None:intergenic 25.0%
! ATGTAACAAGTAATAATCAG+AGG - Chr2:79205127-79205146 MsG0280011079.01.T01:CDS 25.0%
! TAGAAAATTTGATCTTCACA+TGG + Chr2:79205421-79205440 None:intergenic 25.0%
! TGTAACAAGTAATAATCAGA+GGG - Chr2:79205128-79205147 MsG0280011079.01.T01:CDS 25.0%
! TTATGAAAGCCAATGTAATT+TGG - Chr2:79206458-79206477 MsG0280011079.01.T01:five_prime_UTR 25.0%
!! CTGTATATATGATGTGTTTT+AGG - Chr2:79205690-79205709 MsG0280011079.01.T01:intron 25.0%
!!! TTGTTTGTTTTCACTTTCTT+AGG - Chr2:79204892-79204911 MsG0280011079.01.T01:CDS 25.0%
AAAATAAGGAACGTGACTTT+AGG + Chr2:79204743-79204762 None:intergenic 30.0%
AAATAAGGAACGTGACTTTA+GGG + Chr2:79204742-79204761 None:intergenic 30.0%
AAGACATTAATAACAACAGC+AGG - Chr2:79206055-79206074 MsG0280011079.01.T01:five_prime_UTR 30.0%
AATATCAATGGTATTGCTTG+TGG - Chr2:79206175-79206194 MsG0280011079.01.T01:five_prime_UTR 30.0%
AATTGCAGTTGTCATGATTT+GGG - Chr2:79206313-79206332 MsG0280011079.01.T01:five_prime_UTR 30.0%
ACAACATAAATTTACGTTCG+AGG - Chr2:79204834-79204853 MsG0280011079.01.T01:CDS 30.0%
AGAAAGGATGAAATAAACGA+TGG + Chr2:79205348-79205367 None:intergenic 30.0%
AGACTAAGAGACACAAAATA+AGG + Chr2:79204757-79204776 None:intergenic 30.0%
ATTCATGAAGACTACTATCT+TGG - Chr2:79205238-79205257 MsG0280011079.01.T01:intron 30.0%
CAATTAATGATCAGGTACTA+AGG - Chr2:79205942-79205961 MsG0280011079.01.T01:CDS 30.0%
CAATTTCATATTGAAAGGGA+TGG + Chr2:79205853-79205872 None:intergenic 30.0%
CGAACGTAAATTTATGTTGT+CGG + Chr2:79204834-79204853 None:intergenic 30.0%
GAAATAACCTGAAATTCCAA+CGG + Chr2:79205320-79205339 None:intergenic 30.0%
GTTTGGTCCTTGTTAAAATA+TGG - Chr2:79204858-79204877 MsG0280011079.01.T01:CDS 30.0%
TAATTGCAGTTGTCATGATT+TGG - Chr2:79206312-79206331 MsG0280011079.01.T01:five_prime_UTR 30.0%
TGGCAAATATTGAACAAAAC+AGG + Chr2:79206422-79206441 None:intergenic 30.0%
TTATGCATTCTTCTCTTTCT+TGG - Chr2:79205610-79205629 MsG0280011079.01.T01:intron 30.0%
TTCAATTCAATCAAAGCTCA+TGG - Chr2:79204782-79204801 MsG0280011079.01.T01:CDS 30.0%
TTGGATGTATGCAATATCAA+TGG - Chr2:79206163-79206182 MsG0280011079.01.T01:five_prime_UTR 30.0%
! AACGAGGTTTTTCTTCTATT+AGG - Chr2:79204943-79204962 MsG0280011079.01.T01:CDS 30.0%
! ACGAGGTTTTTCTTCTATTA+GGG - Chr2:79204944-79204963 MsG0280011079.01.T01:CDS 30.0%
! AGCTTTGATTGAATTGAAGA+AGG + Chr2:79204780-79204799 None:intergenic 30.0%
! AGTGTTAAAGTATCAAACCT+AGG - Chr2:79205393-79205412 MsG0280011079.01.T01:intron 30.0%
! ATAGTTCTACGTTACATACA+TGG - Chr2:79204704-79204723 MsG0280011079.01.T01:exon 30.0%
! ATATTTGCTGCAATAGCAAT+GGG - Chr2:79206005-79206024 MsG0280011079.01.T01:five_prime_UTR 30.0%
! GGATATCTTTTAACCATGTT+TGG - Chr2:79205088-79205107 MsG0280011079.01.T01:CDS 30.0%
! TGTTTTCATTCGGTTTTTGA+AGG - Chr2:79205289-79205308 MsG0280011079.01.T01:intron 30.0%
!! TTTGTTTTCACTTTCTTAGG+TGG - Chr2:79204895-79204914 MsG0280011079.01.T01:CDS 30.0%
!!! TCTTGCACTTTGTTTTCATT+CGG - Chr2:79205279-79205298 MsG0280011079.01.T01:intron 30.0%
AAATTTACGTTCGAGGAGTT+TGG - Chr2:79204841-79204860 MsG0280011079.01.T01:CDS 35.0%
AATTCAATCAAAGCTCATGG+AGG - Chr2:79204785-79204804 MsG0280011079.01.T01:CDS 35.0%
AATTTATGTTGTCGGAGTCA+TGG + Chr2:79204826-79204845 None:intergenic 35.0%
AGACTACCAAGAAATGATGT+TGG + Chr2:79205461-79205480 None:intergenic 35.0%
GGTGTGTTATGTTACTGTAT+AGG - Chr2:79205712-79205731 MsG0280011079.01.T01:intron 35.0%
TCGTTCCAACGGAAATAATA+AGG + Chr2:79204928-79204947 None:intergenic 35.0%
TCTATTAGGGAACAATTTGC+TGG - Chr2:79204957-79204976 MsG0280011079.01.T01:CDS 35.0%
TGAAGACCAACATCATTTCT+TGG - Chr2:79205452-79205471 MsG0280011079.01.T01:intron 35.0%
TGTCTCCTTATTATTTCCGT+TGG - Chr2:79204920-79204939 MsG0280011079.01.T01:CDS 35.0%
TTATTATTTCCGTTGGAACG+AGG - Chr2:79204927-79204946 MsG0280011079.01.T01:CDS 35.0%
! CAAGTTTGGCATGTGATTTT+AGG - Chr2:79205809-79205828 MsG0280011079.01.T01:intron 35.0%
! GATATTTGCTGCAATAGCAA+TGG - Chr2:79206004-79206023 MsG0280011079.01.T01:five_prime_UTR 35.0%
!! ATTGAAAGGGATGGACTATA+TGG + Chr2:79205844-79205863 None:intergenic 35.0%
!! TAGTTTCTTGCTGTGCTTTT+TGG - Chr2:79206281-79206300 MsG0280011079.01.T01:five_prime_UTR 35.0%
AAAGTTGAGGAACTTGAAGG+AGG - Chr2:79205156-79205175 MsG0280011079.01.T01:CDS 40.0%
AAGCCAACATGAAGGCAAAA+GGG + Chr2:79205063-79205082 None:intergenic 40.0%
AAGTTGAGGAACTTGAAGGA+GGG - Chr2:79205157-79205176 MsG0280011079.01.T01:CDS 40.0%
AATTCCAATTCCTACGCCAA+TGG + Chr2:79206108-79206127 None:intergenic 40.0%
ATTCCAATTCCTACGCCAAT+GGG + Chr2:79206107-79206126 None:intergenic 40.0%
CACAGCAAGAAACTAAACCA+TGG + Chr2:79206276-79206295 None:intergenic 40.0%
GAAGAAAAACCTCGTTCCAA+CGG + Chr2:79204939-79204958 None:intergenic 40.0%
GCTAAAGTTGAGGAACTTGA+AGG - Chr2:79205153-79205172 MsG0280011079.01.T01:CDS 40.0%
GTGACTTTGCATCTCAAGTT+TGG - Chr2:79205748-79205767 MsG0280011079.01.T01:intron 40.0%
TCAGGTACTAAGGAAAAGCA+TGG - Chr2:79205952-79205971 MsG0280011079.01.T01:CDS 40.0%
TGCAAAGTCACATCACAAGT+AGG + Chr2:79205786-79205805 None:intergenic 40.0%
! GAAAAGCATGGAGGAATTTG+TGG - Chr2:79205964-79205983 MsG0280011079.01.T01:CDS 40.0%
! GGCAAAAGGGTAAGTTTTCT+TGG + Chr2:79205050-79205069 None:intergenic 40.0%
! TTACCCTTTTGCCTTCATGT+TGG - Chr2:79205057-79205076 MsG0280011079.01.T01:CDS 40.0%
! TTTGCTGGTGGAGTTTTTCT+TGG - Chr2:79204972-79204991 MsG0280011079.01.T01:CDS 40.0%
!! ATTAGGGAACAATTTGCTGG+TGG - Chr2:79204960-79204979 MsG0280011079.01.T01:CDS 40.0%
!! TAACCATGTTTGGTGATGTG+TGG - Chr2:79205098-79205117 MsG0280011079.01.T01:CDS 40.0%
AACAACAGAAGGGAGAACAG+CGG - Chr2:79206139-79206158 MsG0280011079.01.T01:five_prime_UTR 45.0%
CAAGCCAACATGAAGGCAAA+AGG + Chr2:79205064-79205083 None:intergenic 45.0%
GAGAACACCTCAAGAGAAGA+GGG - Chr2:79205179-79205198 MsG0280011079.01.T01:CDS 45.0%
TATGTTGTCGGAGTCATGGT+CGG + Chr2:79204822-79204841 None:intergenic 45.0%
TCAGAGGGAAGCTAAAGTTG+AGG - Chr2:79205143-79205162 MsG0280011079.01.T01:CDS 45.0%
TCCAGAACAAGCCAACATGA+AGG + Chr2:79205071-79205090 None:intergenic 45.0%
TTCCAATTCCTACGCCAATG+GGG + Chr2:79206106-79206125 None:intergenic 45.0%
TTGATCTTCACATGGGACCT+AGG + Chr2:79205413-79205432 None:intergenic 45.0%
! GGTACTAAGGAAAAGCATGG+AGG - Chr2:79205955-79205974 MsG0280011079.01.T01:CDS 45.0%
!! CATTTGCTATCTCTCCCCAT+TGG - Chr2:79206089-79206108 MsG0280011079.01.T01:five_prime_UTR 45.0%
!! CTAAACCATGGAGTGTCGAA+AGG + Chr2:79206264-79206283 None:intergenic 45.0%
AAGAGCCTTTCGACACTCCA+TGG - Chr2:79206256-79206275 MsG0280011079.01.T01:five_prime_UTR 50.0%
CCACCACACATCACCAAACA+TGG + Chr2:79205104-79205123 None:intergenic 50.0%
CCATCGACGCAACAACAGAA+GGG - Chr2:79206129-79206148 MsG0280011079.01.T01:five_prime_UTR 50.0%
CTAAAGGCTTCAAACCGCAG+AGG - Chr2:79206233-79206252 MsG0280011079.01.T01:five_prime_UTR 50.0%
GGAGAACACCTCAAGAGAAG+AGG - Chr2:79205178-79205197 MsG0280011079.01.T01:CDS 50.0%
!! ACGTGACTTTAGGGCTTTGG+AGG + Chr2:79204733-79204752 None:intergenic 50.0%
!! CCATGTTTGGTGATGTGTGG+TGG - Chr2:79205101-79205120 MsG0280011079.01.T01:CDS 50.0%
!! GCCTTCATGTTGGCTTGTTC+TGG - Chr2:79205067-79205086 MsG0280011079.01.T01:CDS 50.0%
!! GGAACGTGACTTTAGGGCTT+TGG + Chr2:79204736-79204755 None:intergenic 50.0%
!!! GTTTTTGAAGGCATCGCCGT+TGG - Chr2:79205301-79205320 MsG0280011079.01.T01:intron 50.0%
AGAAGAGGGAACGACCGAGT+TGG - Chr2:79205193-79205212 MsG0280011079.01.T01:CDS 55.0%
CAGAAGGGAGAACAGCGGAT+TGG - Chr2:79206144-79206163 MsG0280011079.01.T01:five_prime_UTR 55.0%
CCCTTCTGTTGTTGCGTCGA+TGG + Chr2:79206132-79206151 None:intergenic 55.0%
CTATCTCTCCCCATTGGCGT+AGG - Chr2:79206095-79206114 MsG0280011079.01.T01:five_prime_UTR 55.0%
CTCCCCATTGGCGTAGGAAT+TGG - Chr2:79206101-79206120 MsG0280011079.01.T01:five_prime_UTR 55.0%
GCCATCGACGCAACAACAGA+AGG - Chr2:79206128-79206147 MsG0280011079.01.T01:five_prime_UTR 55.0%
GCTCTCATCCATCGCCAACT+CGG + Chr2:79205210-79205229 None:intergenic 55.0%
GGCATCGCCGTTGGAATTTC+AGG - Chr2:79205310-79205329 MsG0280011079.01.T01:intron 55.0%
GGTCGTTCCCTCTTCTCTTG+AGG + Chr2:79205189-79205208 None:intergenic 55.0%
GTCGAAAGGCTCTTCCTCTG+CGG + Chr2:79206250-79206269 None:intergenic 55.0%
! GGGAACGACCGAGTTGGCGA+TGG - Chr2:79205199-79205218 MsG0280011079.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 79204667 79206543 79204667 ID=MsG0280011079.01;Name=MsG0280011079.01
Chr2 mRNA 79204667 79206543 79204667 ID=MsG0280011079.01.T01;Parent=MsG0280011079.01;Name=MsG0280011079.01.T01;_AED=0.46;_eAED=0.46;_QI=551|1|1|1|0|0|2|45|218
Chr2 exon 79204667 79205254 79204667 ID=MsG0280011079.01.T01:exon:21374;Parent=MsG0280011079.01.T01
Chr2 exon 79205879 79206543 79205879 ID=MsG0280011079.01.T01:exon:21373;Parent=MsG0280011079.01.T01
Chr2 five_prime_UTR 79205993 79206543 79205993 ID=MsG0280011079.01.T01:five_prime_utr;Parent=MsG0280011079.01.T01
Chr2 CDS 79205879 79205992 79205879 ID=MsG0280011079.01.T01:cds;Parent=MsG0280011079.01.T01
Chr2 CDS 79204712 79205254 79204712 ID=MsG0280011079.01.T01:cds;Parent=MsG0280011079.01.T01
Chr2 three_prime_UTR 79204667 79204711 79204667 ID=MsG0280011079.01.T01:three_prime_utr;Parent=MsG0280011079.01.T01
Gene Sequence

>MsG0280011079.01.T01

ATGGATGAGAGCAACGTTGCATTCATGAAGACTACTATCTTGGAGATACAATTTTGCTTATTCTTGCACTTTGTTTTCATTCGGTTTTTGAAGGCATCGCCGTTGGAATTTCAGGTACTAAGGAAAAGCATGGAGGAATTTGTGGACAATATCATTACACAAGATATTTGCTGCAATAGCAATGGGAATCGCGTTGCTAAGAATGTTACCAAAAAGACATTAATAACAACAGCAGGATATTCATTTGCATTTGCTATCTCTCCCCATTGGCGTAGGAATTGGAATTGCCATCGACGCAACAACAGAAGGGAGAACAGCGGATTGGATGTATGCAATATCAATGGTATTGCTTGTGGTGTTTTTGTTTATGTTGCTATCAATCATTTAATCTCTAAAGGCTTCAAACCGCAGAGGAAGAGCCTTTCGACACTCCATGGTTTAGTTTCTTGCTGTGCTTTTTGGTGTTGCTGTAATTGCAGTTGTCATGATTTGGGATTGATATCATTTTCAATTTTCAGCATGTTTTTCTATGATATCTCATTGTTTGTTTCTCTATATGTATGTGTACATGTACGTACCTGTTTTGTTCAATATTTGCCAATGTTTGTAAACTTTTTTATGAAAGCCAATGTAATTTGGAACTTTGATGTATCATAA
Protein sequence

>MsG0280011079.01.T01

MDESNVAFMKTTILEIQFCLFLHFVFIRFLKASPLEFQVLRKSMEEFVDNIITQDICCNSNGNRVAKNVTKKTLITTAGYSFAFAISPHWRRNWNCHRRNNRRENSGLDVCNINGIACGVFVYVAINHLISKGFKPQRKSLSTLHGLVSCCAFWCCCNCSCHDLGLISFSIFSMFFYDISLFVSLYVCVHVRTCFVQYLPMFVNFFMKANVIWNFDVS*