AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015455.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015455.01.T01 MTR_3g070310 96.756 524 13 1 15 538 107 626 0.0 1041
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015455.01.T01 AT5G05700 49.270 548 231 10 15 537 31 556 1.51e-162 474
MsG0380015455.01.T01 AT5G05700 49.270 548 231 10 15 537 106 631 2.51e-161 473
MsG0380015455.01.T01 AT3G11240 48.030 533 229 9 15 537 67 561 1.15e-153 451
MsG0380015455.01.T01 AT3G11240 47.744 532 232 9 15 537 110 604 2.89e-153 452
MsG0380015455.01.T01 AT3G11240 50.529 473 194 7 74 537 4 445 2.20e-150 439
MsG0380015455.01.T01 AT3G11240 50.529 473 194 7 74 537 4 445 2.20e-150 439
MsG0380015455.01.T01 AT3G11240 50.529 473 194 7 74 537 4 445 2.20e-150 439

Find 124 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGAATTGTTTGAAGTATT+TGG 0.169517 3:-70433062 None:intergenic
GATTCAACAGTGAACATTTC+TGG 0.176607 3:+70433479 MsG0380015455.01.T01:CDS
TACTCTGCTCTTCAAGAAAT+TGG 0.199151 3:+70433959 MsG0380015455.01.T01:CDS
TTCTTGTGCATTTGCATATA+CGG 0.212102 3:+70435543 MsG0380015455.01.T01:three_prime_UTR
CCAGCATTAGTTGCTGAATA+TGG 0.218419 3:+70435594 MsG0380015455.01.T01:three_prime_UTR
ATATACGGAATTTAATTTAA+TGG 0.222822 3:+70435558 MsG0380015455.01.T01:three_prime_UTR
CTATATAAAGCATATTCTTC+TGG 0.228134 3:-70433671 None:intergenic
CGATTCGTTGCAGACTTCTT+TGG 0.247968 3:-70433593 None:intergenic
TCCTTCTCACTATCTCTTGA+TGG 0.258555 3:-70433407 None:intergenic
ACAGTTCCTCCTTGTGGTTT+TGG 0.260938 3:+70433806 MsG0380015455.01.T01:CDS
TATCGAGTAAATATTTGTTC+TGG 0.263562 3:+70433903 MsG0380015455.01.T01:CDS
TTTGAAGTAGTTTCTATATC+AGG 0.274161 3:-70434668 None:intergenic
ACATTTCTGGTCTGTCTATC+AGG 0.275790 3:+70433492 MsG0380015455.01.T01:CDS
TCAAATGGTGAACCAGAAAA+TGG 0.316117 3:+70434686 MsG0380015455.01.T01:CDS
GAAAAGTGGAACAAACAAAT+TGG 0.327903 3:-70432968 None:intergenic
GTATGTGAAACATATATTAA+TGG 0.338861 3:-70433773 None:intergenic
AAGGATCTGCAAAGTGTATT+TGG 0.341290 3:+70435229 MsG0380015455.01.T01:intron
TTTCCATCAACAGTATTTAG+TGG 0.347193 3:+70433832 MsG0380015455.01.T01:CDS
ACCATTCTGACTGAAGCTTT+TGG 0.357966 3:-70433254 None:intergenic
CCTTGTCCCTTGACTTTGCT+CGG 0.359889 3:-70433367 None:intergenic
CATCCACTAAATACTGTTGA+TGG 0.367065 3:-70433835 None:intergenic
TTAATATATGTTTCACATAC+TGG 0.367295 3:+70433776 MsG0380015455.01.T01:CDS
ATCGAGTAAATATTTGTTCT+GGG 0.383663 3:+70433904 MsG0380015455.01.T01:CDS
TCTGCAACGAATCGTAATAT+TGG 0.392297 3:+70433602 MsG0380015455.01.T01:CDS
AGAAATGGTTGAATCTGAAT+TGG 0.392690 3:+70434628 MsG0380015455.01.T01:CDS
ATGGTAAATTAGTGGCAGTT+GGG 0.392810 3:+70433855 MsG0380015455.01.T01:CDS
ACCGATGGTTCTTTCTTCCT+AGG 0.400186 3:+70432991 MsG0380015455.01.T01:CDS
CAGCTCCAGCTGCTGGATAC+AGG 0.400677 3:-70435409 None:intergenic
ATATTCTTCTGGATCAAAAC+TGG 0.414826 3:-70433660 None:intergenic
TGCACATGTTCACTGAGAAC+GGG 0.420815 3:+70433207 MsG0380015455.01.T01:CDS
GGATACAGGATCTTATTTGC+TGG 0.421600 3:-70435395 None:intergenic
TCATCTTCATCTTCATGCAT+TGG 0.426710 3:-70434587 None:intergenic
TGCCATTCCTAGAGACAAAT+GGG 0.431593 3:-70435441 None:intergenic
TTTGATCCCCATTTGTCTCT+AGG 0.433714 3:+70435434 MsG0380015455.01.T01:three_prime_UTR
AGAGATAGTGAGAAGGAGAA+TGG 0.437181 3:+70433413 MsG0380015455.01.T01:CDS
TATTTACTCGATAAACAGTT+AGG 0.441413 3:-70433893 None:intergenic
GTACTGGAGACTAGGACAAT+AGG 0.443698 3:-70434002 None:intergenic
TGCTCTTCAAGAAATTGGTT+GGG 0.445508 3:+70433964 MsG0380015455.01.T01:CDS
GATACAGGATCTTATTTGCT+GGG 0.448971 3:-70435394 None:intergenic
TTTAGTGGATGGTAAATTAG+TGG 0.451470 3:+70433847 MsG0380015455.01.T01:CDS
TGAAGATGAAGATGAAGAAA+TGG 0.451588 3:+70434613 MsG0380015455.01.T01:CDS
TCAAATTCAGCTCCAGCTGC+TGG 0.453356 3:-70435416 None:intergenic
GATATAGAAACTACTTCAAA+TGG 0.453880 3:+70434671 MsG0380015455.01.T01:CDS
ACCAAAAGCTTCAGTCAGAA+TGG 0.453937 3:+70433253 MsG0380015455.01.T01:CDS
AGTCTCCAGTACTATTATCT+TGG 0.457037 3:+70434013 MsG0380015455.01.T01:CDS
ATGCCATTCCTAGAGACAAA+TGG 0.457435 3:-70435442 None:intergenic
AGTGATAGAAAGGCAAAGTC+TGG 0.460759 3:-70433929 None:intergenic
CTGCTCTTCAAGAAATTGGT+TGG 0.462545 3:+70433963 MsG0380015455.01.T01:CDS
TGGAGCATGATGGGTTGTTA+TGG 0.468006 3:-70433094 None:intergenic
TTCAGTCAGAATGGTTTCAC+AGG 0.478971 3:+70433262 MsG0380015455.01.T01:CDS
GGGTTTCATTTGACATTGCA+AGG 0.480080 3:+70434417 MsG0380015455.01.T01:CDS
CATCAACAGTATTTAGTGGA+TGG 0.481200 3:+70433836 MsG0380015455.01.T01:CDS
TAAAACTATTGCAGAAAAGC+TGG 0.482141 3:+70433445 MsG0380015455.01.T01:CDS
CAGAAATACAGGAGGGTTGT+CGG 0.488102 3:+70435286 MsG0380015455.01.T01:CDS
CATTTCTGGTCTGTCTATCA+GGG 0.490558 3:+70433493 MsG0380015455.01.T01:CDS
TGATCTTCAGCAACTTGAAG+TGG 0.497795 3:-70434509 None:intergenic
AGTAGCCAAGATAATAGTAC+TGG 0.499159 3:-70434018 None:intergenic
TGAAGTATTTGGTTCCTCCA+TGG 0.500622 3:-70433051 None:intergenic
AGTCACAGTTGCAGAAATAC+AGG 0.501911 3:+70435275 MsG0380015455.01.T01:CDS
AAGATCCTGTATCCAGCAGC+TGG 0.502219 3:+70435404 MsG0380015455.01.T01:three_prime_UTR
GATGGTAAATTAGTGGCAGT+TGG 0.505487 3:+70433854 MsG0380015455.01.T01:CDS
CCATATTCAGCAACTAATGC+TGG 0.513454 3:-70435594 None:intergenic
GATCTTCAGCAACTTGAAGT+GGG 0.518193 3:-70434508 None:intergenic
TCTTCTGACATGGAGCATGA+TGG 0.520063 3:-70433104 None:intergenic
TCGTGAGCAGCAGAGATACT+TGG 0.521603 3:+70435252 MsG0380015455.01.T01:CDS
GTACTTGCCTAGTGATAGAA+AGG 0.522687 3:-70433939 None:intergenic
AAAAGAAGGTATTAGCCAAT+GGG 0.524221 3:+70433288 MsG0380015455.01.T01:CDS
TATAGATGCAGCAACTTGAA+AGG 0.525347 3:-70433342 None:intergenic
TCCCCATTTGTCTCTAGGAA+TGG 0.525816 3:+70435439 MsG0380015455.01.T01:three_prime_UTR
GCTACTATATAAGAGGTCTT+CGG 0.526478 3:-70433312 None:intergenic
CTTGACCACTGTCATCAACC+TGG 0.528218 3:-70434547 None:intergenic
CTTCTGACATGGAGCATGAT+GGG 0.528703 3:-70433103 None:intergenic
TTTGGTAATTGAATACCAGA+TGG 0.531867 3:-70433236 None:intergenic
CTATATTGCTACTATATAAG+AGG 0.536144 3:-70433319 None:intergenic
AGAGGACATAGTAGCTCTGA+AGG 0.537283 3:-70434085 None:intergenic
TCTATCTGTTAGCAATAAAG+AGG 0.539337 3:+70433130 MsG0380015455.01.T01:CDS
TAAGAGGTCTTCGGACCCAT+TGG 0.540930 3:-70433303 None:intergenic
TCAAGACACTATGTTAAGCC+AGG 0.546489 3:+70434529 MsG0380015455.01.T01:CDS
TGGTTGGGTGAAAGATAACC+AGG 0.546626 3:+70433979 MsG0380015455.01.T01:CDS
AAAGAACCATCGGTGAAAAG+TGG 0.547954 3:-70432982 None:intergenic
TGGTAAATTAGTGGCAGTTG+GGG 0.548028 3:+70433856 MsG0380015455.01.T01:CDS
GAGCGAATGGTCTACTCTCT+CGG 0.557386 3:+70435322 MsG0380015455.01.T01:CDS
GCAACGAATCGTAATATTGG+AGG 0.558170 3:+70433605 MsG0380015455.01.T01:CDS
ACACAGAAAGCTCATATCGC+AGG 0.558720 3:+70433735 MsG0380015455.01.T01:CDS
CACTGCATTATCAATCTGAT+CGG 0.558763 3:-70433186 None:intergenic
GAGAACGGGGAATTTCCATC+TGG 0.560903 3:+70433221 MsG0380015455.01.T01:CDS
GTGCACATGTTCACTGAGAA+CGG 0.561725 3:+70433206 MsG0380015455.01.T01:CDS
CTGTCTATCAGGGCTTGCAA+TGG 0.562657 3:+70433503 MsG0380015455.01.T01:CDS
TCCAGTGTTATCCGAGCGAA+TGG 0.566865 3:+70435309 MsG0380015455.01.T01:CDS
AGATAATAGTACTGGAGACT+AGG 0.577677 3:-70434010 None:intergenic
GACTTTGCCTTTCTATCACT+AGG 0.581918 3:+70433932 MsG0380015455.01.T01:CDS
CTATAAACCGAGCAAAGTCA+AGG 0.583219 3:+70433360 MsG0380015455.01.T01:CDS
GGAGACTAGGACAATAGGCC+TGG 0.586272 3:-70433997 None:intergenic
TCTCTCGGTTAATTATATCT+CGG 0.586725 3:+70435337 MsG0380015455.01.T01:exon
ATCTGTTAGCAATAAAGAGG+TGG 0.589633 3:+70433133 MsG0380015455.01.T01:CDS
ACCTAGGAAGAAAGAACCAT+CGG 0.590168 3:-70432992 None:intergenic
CCGAGCAAAGTCAAGGGACA+AGG 0.590380 3:+70433367 MsG0380015455.01.T01:CDS
ACCATCAAGAGATAGTGAGA+AGG 0.595095 3:+70433406 MsG0380015455.01.T01:CDS
GATAACACAGTTCCTCCTTG+TGG 0.595810 3:+70433800 MsG0380015455.01.T01:CDS
GGGATCCCGTGTGAGATACA+AGG 0.598121 3:+70434739 MsG0380015455.01.T01:CDS
AGATAGAGATTCTTCTGACA+TGG 0.604313 3:-70433114 None:intergenic
ATCTTCAGCAACTTGAAGTG+GGG 0.605213 3:-70434507 None:intergenic
ATCATACCTTGTATCTCACA+CGG 0.611139 3:-70434745 None:intergenic
ATGATGGGTTGTTATGGACA+AGG 0.611276 3:-70433088 None:intergenic
TCAGTCAGAATGGTTTCACA+GGG 0.619527 3:+70433263 MsG0380015455.01.T01:CDS
TAACGCTTTCTGTCAAGCAA+AGG 0.626789 3:-70434440 None:intergenic
ACCATTCGCTCGGATAACAC+TGG 0.627386 3:-70435310 None:intergenic
GCAAAGTCAAGGGACAAGGA+TGG 0.632318 3:+70433371 MsG0380015455.01.T01:CDS
TATAAACCGAGCAAAGTCAA+GGG 0.634803 3:+70433361 MsG0380015455.01.T01:CDS
CACAGTTGCAGAAATACAGG+AGG 0.636902 3:+70435278 MsG0380015455.01.T01:CDS
ATACAGGATCTTATTTGCTG+GGG 0.638032 3:-70435393 None:intergenic
TGGAAAGAGCCAAAACCACA+AGG 0.651081 3:-70433815 None:intergenic
TTAACTTACTGATAGCGAAG+AGG 0.662453 3:-70434103 None:intergenic
GAGAGAGTAGACCATTCGCT+CGG 0.668897 3:-70435320 None:intergenic
TGTTAAAAGAGTTGATGCCA+TGG 0.669144 3:+70433034 MsG0380015455.01.T01:CDS
TAAAAGAGTTGATGCCATGG+AGG 0.680258 3:+70433037 MsG0380015455.01.T01:CDS
TCATACCTTGTATCTCACAC+GGG 0.681061 3:-70434744 None:intergenic
GAGGACATAGTAGCTCTGAA+GGG 0.681722 3:-70434084 None:intergenic
GCACATGTTCACTGAGAACG+GGG 0.681833 3:+70433208 MsG0380015455.01.T01:CDS
TTAAGCCAGGTTGATGACAG+TGG 0.699199 3:+70434542 MsG0380015455.01.T01:CDS
GCCATTCCTAGAGACAAATG+GGG 0.718410 3:-70435440 None:intergenic
ACAGTTGCAGAAATACAGGA+GGG 0.725694 3:+70435279 MsG0380015455.01.T01:CDS
AAAGAGCCAAAACCACAAGG+AGG 0.739577 3:-70433812 None:intergenic
CAGTCAGAATGGTTTCACAG+GGG 0.766259 3:+70433264 MsG0380015455.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATACGGAATTTAATTTAA+TGG + Chr3:70435558-70435577 MsG0380015455.01.T01:three_prime_UTR 15.0%
!!! TTTTTGAATAGTAACATTTT+GGG - Chr3:70433564-70433583 None:intergenic 15.0%
!! GTATGTGAAACATATATTAA+TGG - Chr3:70433776-70433795 None:intergenic 20.0%
!! GTTAACATTATCTATTTCAT+AGG - Chr3:70434266-70434285 None:intergenic 20.0%
!! TTAATATATGTTTCACATAC+TGG + Chr3:70433776-70433795 MsG0380015455.01.T01:CDS 20.0%
!!! ATTATGTGAACTTAAGTTTT+TGG + Chr3:70435476-70435495 MsG0380015455.01.T01:three_prime_UTR 20.0%
!!! CTTTTTGAATAGTAACATTT+TGG - Chr3:70433565-70433584 None:intergenic 20.0%
! AATAAAATATCGGTAAGTAG+AGG - Chr3:70434996-70435015 None:intergenic 25.0%
! AGAAGAAAAAAATCAAGCAA+CGG - Chr3:70434338-70434357 None:intergenic 25.0%
! ATCGAGTAAATATTTGTTCT+GGG + Chr3:70433904-70433923 MsG0380015455.01.T01:CDS 25.0%
! CTATATAAAGCATATTCTTC+TGG - Chr3:70433674-70433693 None:intergenic 25.0%
! CTATATTGCTACTATATAAG+AGG - Chr3:70433322-70433341 None:intergenic 25.0%
! GATATAGAAACTACTTCAAA+TGG + Chr3:70434671-70434690 MsG0380015455.01.T01:CDS 25.0%
! GTATGAAAAGGAAGAAATAT+AGG - Chr3:70434925-70434944 None:intergenic 25.0%
! GTTACCTCCAAATAAAATAT+CGG - Chr3:70435006-70435025 None:intergenic 25.0%
! TATCGAGTAAATATTTGTTC+TGG + Chr3:70433903-70433922 MsG0380015455.01.T01:CDS 25.0%
! TATTTACTCGATAAACAGTT+AGG - Chr3:70433896-70433915 None:intergenic 25.0%
! TTCTTTCACATAATATAGGT+GGG - Chr3:70434366-70434385 None:intergenic 25.0%
!! CTACTTACCGATATTTTATT+TGG + Chr3:70434996-70435015 MsG0380015455.01.T01:intron 25.0%
!! GAGAAATTACAATTTTGTCT+TGG - Chr3:70434971-70434990 None:intergenic 25.0%
!! TCTGAATTGTTTGAAGTATT+TGG - Chr3:70433065-70433084 None:intergenic 25.0%
!! TTTGAAGTAGTTTCTATATC+AGG - Chr3:70434671-70434690 None:intergenic 25.0%
!!! ATATTTTATTTGGAGGTAAC+CGG + Chr3:70435006-70435025 MsG0380015455.01.T01:intron 25.0%
!!! TTAGTTTTTCCTTAAACACA+TGG - Chr3:70435065-70435084 None:intergenic 25.0%
!!! TTGTCTTGGTAATATCTTTT+CGG - Chr3:70434957-70434976 None:intergenic 25.0%
AGAAATGGTTGAATCTGAAT+TGG + Chr3:70434628-70434647 MsG0380015455.01.T01:CDS 30.0%
AGCCTTCTTTCACATAATAT+AGG - Chr3:70434370-70434389 None:intergenic 30.0%
ATAGCGAGTATGTTTCAAAA+TGG + Chr3:70434875-70434894 MsG0380015455.01.T01:intron 30.0%
ATATTCTTCTGGATCAAAAC+TGG - Chr3:70433663-70433682 None:intergenic 30.0%
ATGATTTATTTGTCCCATTC+TGG + Chr3:70435156-70435175 MsG0380015455.01.T01:intron 30.0%
CACCTATATTATGTGAAAGA+AGG + Chr3:70434365-70434384 MsG0380015455.01.T01:intron 30.0%
CTTCTTTCACATAATATAGG+TGG - Chr3:70434367-70434386 None:intergenic 30.0%
GAAAAGTGGAACAAACAAAT+TGG - Chr3:70432971-70432990 None:intergenic 30.0%
TAAAACTATTGCAGAAAAGC+TGG + Chr3:70433445-70433464 MsG0380015455.01.T01:CDS 30.0%
TATAGTAGAAGACTATGAAG+AGG - Chr3:70434298-70434317 None:intergenic 30.0%
TCTATCTGTTAGCAATAAAG+AGG + Chr3:70433130-70433149 MsG0380015455.01.T01:CDS 30.0%
TCTCTCGGTTAATTATATCT+CGG + Chr3:70435337-70435356 MsG0380015455.01.T01:exon 30.0%
TGAAGATGAAGATGAAGAAA+TGG + Chr3:70434613-70434632 MsG0380015455.01.T01:CDS 30.0%
TGTTAGTTGCGAAAAATTGT+AGG + Chr3:70434834-70434853 MsG0380015455.01.T01:intron 30.0%
TTCTTGTGCATTTGCATATA+CGG + Chr3:70435543-70435562 MsG0380015455.01.T01:three_prime_UTR 30.0%
TTTCCATCAACAGTATTTAG+TGG + Chr3:70433832-70433851 MsG0380015455.01.T01:CDS 30.0%
! AAAGTTTTGCTAGGGATAAA+GGG + Chr3:70434719-70434738 MsG0380015455.01.T01:CDS 30.0%
! ACGTTTATGCACAAAGTTTT+TGG - Chr3:70434180-70434199 None:intergenic 30.0%
! AGCTTTTCTGCAATAGTTTT+AGG - Chr3:70433446-70433465 None:intergenic 30.0%
! ATCAACTCTTTTAACATCCA+AGG - Chr3:70433030-70433049 None:intergenic 30.0%
! ATTTCAGCAAAGTTTTGCTA+GGG + Chr3:70434711-70434730 MsG0380015455.01.T01:CDS 30.0%
! GATGCTTCCATTTTACAAAA+TGG + Chr3:70434476-70434495 MsG0380015455.01.T01:CDS 30.0%
! TGACTCTCCATTTTGTAAAA+TGG - Chr3:70434486-70434505 None:intergenic 30.0%
! TTCGCAACTAACATTTTCTA+AGG - Chr3:70434827-70434846 None:intergenic 30.0%
! TTTAGTGGATGGTAAATTAG+TGG + Chr3:70433847-70433866 MsG0380015455.01.T01:CDS 30.0%
! TTTGGTAATTGAATACCAGA+TGG - Chr3:70433239-70433258 None:intergenic 30.0%
! TTTTGGATAAACTACAAGCA+TGG - Chr3:70434163-70434182 None:intergenic 30.0%
!! AAAAAGAAGGTATTAGCCAA+TGG + Chr3:70433287-70433306 MsG0380015455.01.T01:CDS 30.0%
!! AAAAGAAGGTATTAGCCAAT+GGG + Chr3:70433288-70433307 MsG0380015455.01.T01:CDS 30.0%
!! CAACTAACATTTTCTAAGGA+TGG - Chr3:70434823-70434842 None:intergenic 30.0%
!! CTTACCGATATTTTATTTGG+AGG + Chr3:70434999-70435018 MsG0380015455.01.T01:intron 30.0%
!! TGTCTTGGTAATATCTTTTC+GGG - Chr3:70434956-70434975 None:intergenic 30.0%
!! TTTCTTCCTAGGTTTTTAGA+TGG + Chr3:70433002-70433021 MsG0380015455.01.T01:CDS 30.0%
!!! CAACATGACTAGTTTTACAT+TGG - Chr3:70435092-70435111 None:intergenic 30.0%
!!! GAACTTAAGTTTTTGGTCAA+TGG + Chr3:70435483-70435502 MsG0380015455.01.T01:three_prime_UTR 30.0%
AAAATATCGGTAAGTAGAGG+AGG - Chr3:70434993-70435012 None:intergenic 35.0%
AACATCAATGAATGATCTCC+AGG + Chr3:70434393-70434412 MsG0380015455.01.T01:intron 35.0%
AAGGATCTGCAAAGTGTATT+TGG + Chr3:70435229-70435248 MsG0380015455.01.T01:intron 35.0%
AAGGTTCCATCTAAAAACCT+AGG - Chr3:70433011-70433030 None:intergenic 35.0%
ACTAGTCATGTTGCATGTTT+AGG + Chr3:70435099-70435118 MsG0380015455.01.T01:intron 35.0%
ACTATATCAGCATGCTGTAT+AGG + Chr3:70434312-70434331 MsG0380015455.01.T01:intron 35.0%
AGATAGAGATTCTTCTGACA+TGG - Chr3:70433117-70433136 None:intergenic 35.0%
AGTAGCCAAGATAATAGTAC+TGG - Chr3:70434021-70434040 None:intergenic 35.0%
AGTCTCCAGTACTATTATCT+TGG + Chr3:70434013-70434032 MsG0380015455.01.T01:CDS 35.0%
AGTTTGGATCCATGTGTTTA+AGG + Chr3:70435053-70435072 MsG0380015455.01.T01:intron 35.0%
ATCATACCTTGTATCTCACA+CGG - Chr3:70434748-70434767 None:intergenic 35.0%
ATCTGTTAGCAATAAAGAGG+TGG + Chr3:70433133-70433152 MsG0380015455.01.T01:CDS 35.0%
ATGGGACAAATAAATCATGC+AGG - Chr3:70435154-70435173 None:intergenic 35.0%
ATGGTAAATTAGTGGCAGTT+GGG + Chr3:70433855-70433874 MsG0380015455.01.T01:CDS 35.0%
CACTGCATTATCAATCTGAT+CGG - Chr3:70433189-70433208 None:intergenic 35.0%
CATCAACAGTATTTAGTGGA+TGG + Chr3:70433836-70433855 MsG0380015455.01.T01:CDS 35.0%
CATCCACTAAATACTGTTGA+TGG - Chr3:70433838-70433857 None:intergenic 35.0%
GATTCAACAGTGAACATTTC+TGG + Chr3:70433479-70433498 MsG0380015455.01.T01:CDS 35.0%
GCTACTATATAAGAGGTCTT+CGG - Chr3:70433315-70433334 None:intergenic 35.0%
GTGAATTTCAGACATGTTGT+CGG + Chr3:70434897-70434916 MsG0380015455.01.T01:intron 35.0%
TACTCTGCTCTTCAAGAAAT+TGG + Chr3:70433959-70433978 MsG0380015455.01.T01:CDS 35.0%
TAGTGATAGAGGAAAGAGTT+TGG + Chr3:70435037-70435056 MsG0380015455.01.T01:intron 35.0%
TATAAACCGAGCAAAGTCAA+GGG + Chr3:70433361-70433380 MsG0380015455.01.T01:CDS 35.0%
TATAGATGCAGCAACTTGAA+AGG - Chr3:70433345-70433364 None:intergenic 35.0%
TCAAATGGTGAACCAGAAAA+TGG + Chr3:70434686-70434705 MsG0380015455.01.T01:CDS 35.0%
TCATCTTCATCTTCATGCAT+TGG - Chr3:70434590-70434609 None:intergenic 35.0%
TCTGCAACGAATCGTAATAT+TGG + Chr3:70433602-70433621 MsG0380015455.01.T01:CDS 35.0%
TGCTCTTCAAGAAATTGGTT+GGG + Chr3:70433964-70433983 MsG0380015455.01.T01:CDS 35.0%
! AGATAATAGTACTGGAGACT+AGG - Chr3:70434013-70434032 None:intergenic 35.0%
! ATACAGGATCTTATTTGCTG+GGG - Chr3:70435396-70435415 None:intergenic 35.0%
! CAAAGTTTTGCTAGGGATAA+AGG + Chr3:70434718-70434737 MsG0380015455.01.T01:CDS 35.0%
! GAGCTTTCTGTGTAATTTTC+TGG - Chr3:70433728-70433747 None:intergenic 35.0%
! GATACAGGATCTTATTTGCT+GGG - Chr3:70435397-70435416 None:intergenic 35.0%
! GATTTCAGCAAAGTTTTGCT+AGG + Chr3:70434710-70434729 MsG0380015455.01.T01:CDS 35.0%
! TTAACTTACTGATAGCGAAG+AGG - Chr3:70434106-70434125 None:intergenic 35.0%
!! TAGGTTTTTAGATGGAACCT+TGG + Chr3:70433010-70433029 MsG0380015455.01.T01:CDS 35.0%
!! TGTTAAAAGAGTTGATGCCA+TGG + Chr3:70433034-70433053 MsG0380015455.01.T01:CDS 35.0%
AAACTACAAGCATGGTGAAG+TGG - Chr3:70434155-70434174 None:intergenic 40.0%
AAAGAACCATCGGTGAAAAG+TGG - Chr3:70432985-70433004 None:intergenic 40.0%
AATGTCAAATGAAACCCACC+TGG - Chr3:70434414-70434433 None:intergenic 40.0%
ACAACAAGTCAGACCAGAAT+GGG - Chr3:70435172-70435191 None:intergenic 40.0%
ACAGTTGCAGAAATACAGGA+GGG + Chr3:70435279-70435298 MsG0380015455.01.T01:CDS 40.0%
ACCAAAAGCTTCAGTCAGAA+TGG + Chr3:70433253-70433272 MsG0380015455.01.T01:CDS 40.0%
ACCATCAAGAGATAGTGAGA+AGG + Chr3:70433406-70433425 MsG0380015455.01.T01:CDS 40.0%
ACCTAGGAAGAAAGAACCAT+CGG - Chr3:70432995-70433014 None:intergenic 40.0%
AGAGATAGTGAGAAGGAGAA+TGG + Chr3:70433413-70433432 MsG0380015455.01.T01:CDS 40.0%
AGTCACAGTTGCAGAAATAC+AGG + Chr3:70435275-70435294 MsG0380015455.01.T01:CDS 40.0%
AGTGATAGAAAGGCAAAGTC+TGG - Chr3:70433932-70433951 None:intergenic 40.0%
ATCAATGAATGATCTCCAGG+TGG + Chr3:70434396-70434415 MsG0380015455.01.T01:intron 40.0%
ATCTTCAGCAACTTGAAGTG+GGG - Chr3:70434510-70434529 None:intergenic 40.0%
ATGCCATTCCTAGAGACAAA+TGG - Chr3:70435445-70435464 None:intergenic 40.0%
CCAGCATTAGTTGCTGAATA+TGG + Chr3:70435594-70435613 MsG0380015455.01.T01:three_prime_UTR 40.0%
CCATATTCAGCAACTAATGC+TGG - Chr3:70435597-70435616 None:intergenic 40.0%
CTATAAACCGAGCAAAGTCA+AGG + Chr3:70433360-70433379 MsG0380015455.01.T01:CDS 40.0%
CTGCTCTTCAAGAAATTGGT+TGG + Chr3:70433963-70433982 MsG0380015455.01.T01:CDS 40.0%
CTTAAAGCACAGGAAGTAAC+TGG - Chr3:70434793-70434812 None:intergenic 40.0%
GACTTTGCCTTTCTATCACT+AGG + Chr3:70433932-70433951 MsG0380015455.01.T01:CDS 40.0%
GATCTTCAGCAACTTGAAGT+GGG - Chr3:70434511-70434530 None:intergenic 40.0%
GATGGTAAATTAGTGGCAGT+TGG + Chr3:70433854-70433873 MsG0380015455.01.T01:CDS 40.0%
GCAACGAATCGTAATATTGG+AGG + Chr3:70433605-70433624 MsG0380015455.01.T01:CDS 40.0%
GGGTTTCATTTGACATTGCA+AGG + Chr3:70434417-70434436 MsG0380015455.01.T01:CDS 40.0%
GTACTTGCCTAGTGATAGAA+AGG - Chr3:70433942-70433961 None:intergenic 40.0%
TAACGCTTTCTGTCAAGCAA+AGG - Chr3:70434443-70434462 None:intergenic 40.0%
TATTTGGAGGTAACCGGATT+GGG + Chr3:70435012-70435031 MsG0380015455.01.T01:intron 40.0%
TCAAGACACTATGTTAAGCC+AGG + Chr3:70434529-70434548 MsG0380015455.01.T01:CDS 40.0%
TCAATGAATGATCTCCAGGT+GGG + Chr3:70434397-70434416 MsG0380015455.01.T01:intron 40.0%
TCAGTCAGAATGGTTTCACA+GGG + Chr3:70433263-70433282 MsG0380015455.01.T01:CDS 40.0%
TCATACCTTGTATCTCACAC+GGG - Chr3:70434747-70434766 None:intergenic 40.0%
TCCTTCAGATATGAATAGCG+CGG - Chr3:70435214-70435233 None:intergenic 40.0%
TCCTTCTCACTATCTCTTGA+TGG - Chr3:70433410-70433429 None:intergenic 40.0%
TGATCTTCAGCAACTTGAAG+TGG - Chr3:70434512-70434531 None:intergenic 40.0%
TGCCATTCCTAGAGACAAAT+GGG - Chr3:70435444-70435463 None:intergenic 40.0%
TGGTAAATTAGTGGCAGTTG+GGG + Chr3:70433856-70433875 MsG0380015455.01.T01:CDS 40.0%
TTATTTGGAGGTAACCGGAT+TGG + Chr3:70435011-70435030 MsG0380015455.01.T01:intron 40.0%
TTCAGTCAGAATGGTTTCAC+AGG + Chr3:70433262-70433281 MsG0380015455.01.T01:CDS 40.0%
TTTGATCCCCATTTGTCTCT+AGG + Chr3:70435434-70435453 MsG0380015455.01.T01:three_prime_UTR 40.0%
! AAGCTCATATCGCAGGTTTT+TGG + Chr3:70433742-70433761 MsG0380015455.01.T01:CDS 40.0%
! ACCATTCTGACTGAAGCTTT+TGG - Chr3:70433257-70433276 None:intergenic 40.0%
! GGATACAGGATCTTATTTGC+TGG - Chr3:70435398-70435417 None:intergenic 40.0%
! TGAAGTATTTGGTTCCTCCA+TGG - Chr3:70433054-70433073 None:intergenic 40.0%
!! AACATTTTCTAAGGATGGCC+AGG - Chr3:70434818-70434837 None:intergenic 40.0%
!! ACATTTCTGGTCTGTCTATC+AGG + Chr3:70433492-70433511 MsG0380015455.01.T01:CDS 40.0%
!! ATGATGGGTTGTTATGGACA+AGG - Chr3:70433091-70433110 None:intergenic 40.0%
!! CATTTCTGGTCTGTCTATCA+GGG + Chr3:70433493-70433512 MsG0380015455.01.T01:CDS 40.0%
!! GGTAATATCTTTTCGGGAGA+CGG - Chr3:70434950-70434969 None:intergenic 40.0%
!! GTAATATCTTTTCGGGAGAC+GGG - Chr3:70434949-70434968 None:intergenic 40.0%
!! TAAAAGAGTTGATGCCATGG+AGG + Chr3:70433037-70433056 MsG0380015455.01.T01:CDS 40.0%
!! TTGCTGAAATCGCCATTTTC+TGG - Chr3:70434701-70434720 None:intergenic 40.0%
!! TTTGTTCCACTTTTCACCGA+TGG + Chr3:70432976-70432995 MsG0380015455.01.T01:CDS 40.0%
AAAGAGCCAAAACCACAAGG+AGG - Chr3:70433815-70433834 None:intergenic 45.0%
ACACAGAAAGCTCATATCGC+AGG + Chr3:70433735-70433754 MsG0380015455.01.T01:CDS 45.0%
ACCGATGGTTCTTTCTTCCT+AGG + Chr3:70432991-70433010 MsG0380015455.01.T01:CDS 45.0%
ACCGCGCTATTCATATCTGA+AGG + Chr3:70435210-70435229 MsG0380015455.01.T01:intron 45.0%
ATTTGGAGGTAACCGGATTG+GGG + Chr3:70435013-70435032 MsG0380015455.01.T01:intron 45.0%
CACAGTTGCAGAAATACAGG+AGG + Chr3:70435278-70435297 MsG0380015455.01.T01:CDS 45.0%
CAGAAATACAGGAGGGTTGT+CGG + Chr3:70435286-70435305 MsG0380015455.01.T01:CDS 45.0%
CAGTCAGAATGGTTTCACAG+GGG + Chr3:70433264-70433283 MsG0380015455.01.T01:CDS 45.0%
CGATTCGTTGCAGACTTCTT+TGG - Chr3:70433596-70433615 None:intergenic 45.0%
CTCTATCACTATCCCCAATC+CGG - Chr3:70435028-70435047 None:intergenic 45.0%
CTTCTGACATGGAGCATGAT+GGG - Chr3:70433106-70433125 None:intergenic 45.0%
GACAACAAGTCAGACCAGAA+TGG - Chr3:70435173-70435192 None:intergenic 45.0%
GATAACACAGTTCCTCCTTG+TGG + Chr3:70433800-70433819 MsG0380015455.01.T01:CDS 45.0%
GCCATTCCTAGAGACAAATG+GGG - Chr3:70435443-70435462 None:intergenic 45.0%
GGTTTCACAGGGGAAAAAGA+AGG + Chr3:70433274-70433293 MsG0380015455.01.T01:CDS 45.0%
GTACTGGAGACTAGGACAAT+AGG - Chr3:70434005-70434024 None:intergenic 45.0%
GTGCACATGTTCACTGAGAA+CGG + Chr3:70433206-70433225 MsG0380015455.01.T01:CDS 45.0%
TCTTCTGACATGGAGCATGA+TGG - Chr3:70433107-70433126 None:intergenic 45.0%
TGCACATGTTCACTGAGAAC+GGG + Chr3:70433207-70433226 MsG0380015455.01.T01:CDS 45.0%
TGGAAAGAGCCAAAACCACA+AGG - Chr3:70433818-70433837 None:intergenic 45.0%
TGGTTGGGTGAAAGATAACC+AGG + Chr3:70433979-70433998 MsG0380015455.01.T01:CDS 45.0%
! ACAGTTCCTCCTTGTGGTTT+TGG + Chr3:70433806-70433825 MsG0380015455.01.T01:CDS 45.0%
! TCCCCATTTGTCTCTAGGAA+TGG + Chr3:70435439-70435458 MsG0380015455.01.T01:three_prime_UTR 45.0%
!! AGAGGACATAGTAGCTCTGA+AGG - Chr3:70434088-70434107 None:intergenic 45.0%
!! GAGGACATAGTAGCTCTGAA+GGG - Chr3:70434087-70434106 None:intergenic 45.0%
!! TGGAGCATGATGGGTTGTTA+TGG - Chr3:70433097-70433116 None:intergenic 45.0%
!! TTAAGCCAGGTTGATGACAG+TGG + Chr3:70434542-70434561 MsG0380015455.01.T01:CDS 45.0%
!!! TTTTATTTTATAACAATTAT+TGG + Chr3:70434227-70434246 MsG0380015455.01.T01:intron 5.0%
AAGATCCTGTATCCAGCAGC+TGG + Chr3:70435404-70435423 MsG0380015455.01.T01:three_prime_UTR 50.0%
ACCATTCGCTCGGATAACAC+TGG - Chr3:70435313-70435332 None:intergenic 50.0%
CCTTGTCCCTTGACTTTGCT+CGG - Chr3:70433370-70433389 None:intergenic 50.0%
CTGTCTATCAGGGCTTGCAA+TGG + Chr3:70433503-70433522 MsG0380015455.01.T01:CDS 50.0%
CTTGACCACTGTCATCAACC+TGG - Chr3:70434550-70434569 None:intergenic 50.0%
GAGAACGGGGAATTTCCATC+TGG + Chr3:70433221-70433240 MsG0380015455.01.T01:CDS 50.0%
GAGAGAGTAGACCATTCGCT+CGG - Chr3:70435323-70435342 None:intergenic 50.0%
GAGCGAATGGTCTACTCTCT+CGG + Chr3:70435322-70435341 MsG0380015455.01.T01:CDS 50.0%
GCAAAGTCAAGGGACAAGGA+TGG + Chr3:70433371-70433390 MsG0380015455.01.T01:CDS 50.0%
GCACATGTTCACTGAGAACG+GGG + Chr3:70433208-70433227 MsG0380015455.01.T01:CDS 50.0%
TAAGAGGTCTTCGGACCCAT+TGG - Chr3:70433306-70433325 None:intergenic 50.0%
TCAAATTCAGCTCCAGCTGC+TGG - Chr3:70435419-70435438 None:intergenic 50.0%
TCCAGTGTTATCCGAGCGAA+TGG + Chr3:70435309-70435328 MsG0380015455.01.T01:CDS 50.0%
TCGTGAGCAGCAGAGATACT+TGG + Chr3:70435252-70435271 MsG0380015455.01.T01:CDS 50.0%
! CGGATTGGGGATAGTGATAG+AGG + Chr3:70435026-70435045 MsG0380015455.01.T01:intron 50.0%
! CTTCCTGTGCTTTAAGCACC+TGG + Chr3:70434797-70434816 MsG0380015455.01.T01:intron 50.0%
CCGAGCAAAGTCAAGGGACA+AGG + Chr3:70433367-70433386 MsG0380015455.01.T01:CDS 55.0%
GGAGACTAGGACAATAGGCC+TGG - Chr3:70434000-70434019 None:intergenic 55.0%
GGGATCCCGTGTGAGATACA+AGG + Chr3:70434739-70434758 MsG0380015455.01.T01:CDS 55.0%
TGGCCAGGTGCTTAAAGCAC+AGG - Chr3:70434803-70434822 None:intergenic 55.0%
! CGGGAGACGGGAGTATGAAA+AGG - Chr3:70434937-70434956 None:intergenic 55.0%
CAGCTCCAGCTGCTGGATAC+AGG - Chr3:70435412-70435431 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 70432963 70435644 70432963 ID=MsG0380015455.01;Name=MsG0380015455.01
Chr3 mRNA 70432963 70435644 70432963 ID=MsG0380015455.01.T01;Parent=MsG0380015455.01;Name=MsG0380015455.01.T01;_AED=0.44;_eAED=0.46;_QI=0|1|0.66|1|1|1|3|296|538
Chr3 exon 70432963 70434116 70432963 ID=MsG0380015455.01.T01:exon:23620;Parent=MsG0380015455.01.T01
Chr3 exon 70434415 70434760 70434415 ID=MsG0380015455.01.T01:exon:23621;Parent=MsG0380015455.01.T01
Chr3 exon 70435232 70435644 70435232 ID=MsG0380015455.01.T01:exon:23622;Parent=MsG0380015455.01.T01
Chr3 CDS 70432963 70434116 70432963 ID=MsG0380015455.01.T01:cds;Parent=MsG0380015455.01.T01
Chr3 CDS 70434415 70434760 70434415 ID=MsG0380015455.01.T01:cds;Parent=MsG0380015455.01.T01
Chr3 CDS 70435232 70435348 70435232 ID=MsG0380015455.01.T01:cds;Parent=MsG0380015455.01.T01
Chr3 three_prime_UTR 70435349 70435644 70435349 ID=MsG0380015455.01.T01:three_prime_utr;Parent=MsG0380015455.01.T01
Gene Sequence

>MsG0380015455.01.T01

ATGTTCCAATTTGTTTGTTCCACTTTTCACCGATGGTTCTTTCTTCCTAGGTTTTTAGATGGAACCTTGGATGTTAAAAGAGTTGATGCCATGGAGGAACCAAATACTTCAAACAATTCAGAAAGCCTTGTCCATAACAACCCATCATGCTCCATGTCAGAAGAATCTCTATCTGTTAGCAATAAAGAGGTGGATGAAGTTGAAAAATCTTTGCACTATTTATCCGATCAGATTGATAATGCAGTGCACATGTTCACTGAGAACGGGGAATTTCCATCTGGTATTCAATTACCAAAAGCTTCAGTCAGAATGGTTTCACAGGGGAAAAAGAAGGTATTAGCCAATGGGTCCGAAGACCTCTTATATAGTAGCAATATAGCCTTTCAAGTTGCTGCATCTATAAACCGAGCAAAGTCAAGGGACAAGGATGGTAATGATTCTAAACCATCAAGAGATAGTGAGAAGGAGAATGGATTTTCTCCTAAAACTATTGCAGAAAAGCTGGTAGCATCTTTAGATTCAACAGTGAACATTTCTGGTCTGTCTATCAGGGCTTGCAATGGACATGTAAATTTTTATGCTTCTAGTAAGCAAGTTTCCCAAAATGTTACTATTCAAAAAGCTGCAATTCCAAAGAAGTCTGCAACGAATCGTAATATTGGAGGAAAGCGAAAACTTGAGATTCGTTTGAACAGATCCAGTTTTGATCCAGAAGAATATGCTTTATATAGAAAATATCAGAGAAAAGTACATAATGATAAACCAGAAAATTACACAGAAAGCTCATATCGCAGGTTTTTGGTTGATACTCCATTAATATATGTTTCACATACTGGTGATAACACAGTTCCTCCTTGTGGTTTTGGCTCTTTCCATCAACAGTATTTAGTGGATGGTAAATTAGTGGCAGTTGGGGTTATAGATATTCTTCCTAACTGTTTATCGAGTAAATATTTGTTCTGGGATCCAGACTTTGCCTTTCTATCACTAGGCAAGTACTCTGCTCTTCAAGAAATTGGTTGGGTGAAAGATAACCAGGCCTATTGTCCTAGTCTCCAGTACTATTATCTTGGCTACTATATTCACTCTTGCAACAAGATGAGATACAAAGCTGCATATCGCCCTTCAGAGCTACTATGTCCTCTTCGCTATCAGTGGGTTTCATTTGACATTGCAAGGCCTTTGCTTGACAGAAAGCGTTATGTTGTCTTATCAGATGCTTCCATTTTACAAAATGGAGAGTCATCCCCACTTCAAGTTGCTGAAGATCAAGACACTATGTTAAGCCAGGTTGATGACAGTGGTCAAGAAGATGCAAATGATGTTCCAATGCATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGAAATGGTTGAATCTGAATTGGAAAGTTCTGATGATGAACCTGATATAGAAACTACTTCAAATGGTGAACCAGAAAATGGCGATTTCAGCAAAGTTTTGCTAGGGATAAAGGGATCCCGTGTGAGATACAAGGATCTGCAAAGTGTATTTGGTCGTGAGCAGCAGAGATACTTGGAGTCACAGTTGCAGAAATACAGGAGGGTTGTCGGTCCAGTGTTATCCGAGCGAATGGTCTACTCTCTCGGTTAA

Protein sequence

>MsG0380015455.01.T01

MFQFVCSTFHRWFFLPRFLDGTLDVKRVDAMEEPNTSNNSESLVHNNPSCSMSEESLSVSNKEVDEVEKSLHYLSDQIDNAVHMFTENGEFPSGIQLPKASVRMVSQGKKKVLANGSEDLLYSSNIAFQVAASINRAKSRDKDGNDSKPSRDSEKENGFSPKTIAEKLVASLDSTVNISGLSIRACNGHVNFYASSKQVSQNVTIQKAAIPKKSATNRNIGGKRKLEIRLNRSSFDPEEYALYRKYQRKVHNDKPENYTESSYRRFLVDTPLIYVSHTGDNTVPPCGFGSFHQQYLVDGKLVAVGVIDILPNCLSSKYLFWDPDFAFLSLGKYSALQEIGWVKDNQAYCPSLQYYYLGYYIHSCNKMRYKAAYRPSELLCPLRYQWVSFDIARPLLDRKRYVVLSDASILQNGESSPLQVAEDQDTMLSQVDDSGQEDANDVPMHEDEDEDEDEDEEMVESELESSDDEPDIETTSNGEPENGDFSKVLLGIKGSRVRYKDLQSVFGREQQRYLESQLQKYRRVVGPVLSERMVYSLG*