AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011121.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011121.01.T01 MTR_3g034840 73.554 121 28 1 1 117 1 121 5.00e-55 179
MsG0280011121.01.T01 MTR_0599s0020 73.554 121 28 1 1 117 1 121 5.00e-55 179
MsG0280011121.01.T01 MTR_4g120790 80.412 97 19 0 1 97 1 97 1.43e-50 167
MsG0280011121.01.T01 MTR_4g066180 46.078 204 58 5 5 195 1 165 2.13e-44 149
MsG0280011121.01.T01 MTR_5g015710 46.296 216 92 6 1 203 1 205 3.99e-43 147
MsG0280011121.01.T01 MTR_2g027000 70.833 96 22 2 1 90 1 96 9.58e-39 135
MsG0280011121.01.T01 MTR_2g099090 66.102 118 26 2 217 322 18 133 5.28e-36 132
MsG0280011121.01.T01 MTR_2g099090 66.102 118 26 2 217 322 34 149 5.38e-36 132
MsG0280011121.01.T01 MTR_3g045850 52.672 131 50 5 1 121 1 129 1.75e-30 113
MsG0280011121.01.T01 MTR_4g100470 75.714 70 17 0 1 70 1 70 3.65e-30 114
MsG0280011121.01.T01 MTR_4g068100 73.171 82 22 0 241 322 54 135 2.89e-28 111
MsG0280011121.01.T01 MTR_4g068100 84.058 69 11 0 254 322 5 73 3.06e-28 110
MsG0280011121.01.T01 MTR_4g068100 73.171 82 22 0 241 322 54 135 3.15e-28 111
MsG0280011121.01.T01 MTR_8g468040 66.667 84 24 2 118 201 468 547 1.83e-27 112
MsG0280011121.01.T01 MTR_1g043440 68.750 80 21 2 1 76 98 177 1.39e-26 107
MsG0280011121.01.T01 MTR_3g077875 47.059 136 56 4 1 121 1 135 2.04e-26 106
MsG0280011121.01.T01 MTR_2g046540 67.143 70 23 0 48 117 68 137 3.01e-26 102
MsG0280011121.01.T01 MTR_3g087440 46.617 133 55 3 1 118 1 132 1.16e-25 102
MsG0280011121.01.T01 MTR_2g061890 59.302 86 31 2 118 203 292 373 1.84e-25 105
MsG0280011121.01.T01 MTR_1g064700 61.628 86 27 2 118 203 111 190 3.64e-25 100
MsG0280011121.01.T01 MTR_6g035400 62.791 86 26 2 118 203 362 441 1.03e-24 103
MsG0280011121.01.T01 MTR_4g132765 61.628 86 27 2 118 203 941 1020 5.28e-24 103
MsG0280011121.01.T01 MTR_4g132765 47.959 98 37 3 1 85 186 282 1.10e-15 78.2
MsG0280011121.01.T01 MTR_7g056013 60.465 86 28 2 118 203 416 495 1.23e-23 101
MsG0280011121.01.T01 MTR_5g079560 47.287 129 52 4 5 118 1 128 2.28e-23 97.1
MsG0280011121.01.T01 MTR_8g017510 59.302 86 29 2 118 203 148 227 3.86e-23 95.9
MsG0280011121.01.T01 MTR_7g004990 56.977 86 31 2 118 203 60 139 8.85e-23 92.4
MsG0280011121.01.T01 MTR_3g087410 62.025 79 24 2 125 203 223 295 1.29e-22 95.9
MsG0280011121.01.T01 MTR_6g084230 62.821 78 26 1 118 195 148 222 5.68e-22 94.7
MsG0280011121.01.T01 MTR_4g035845 80.392 51 10 0 1 51 137 187 1.03e-19 86.3
MsG0280011121.01.T01 MTR_1g075860 57.971 69 29 0 50 118 35 103 1.58e-19 83.2
MsG0280011121.01.T01 MTR_1g075420 56.944 72 31 0 50 121 25 96 1.85e-19 83.2
MsG0280011121.01.T01 MTR_7g064870 48.276 116 38 5 1 116 1 94 7.26e-19 83.2
MsG0280011121.01.T01 MTR_0700s0010 58.333 96 31 3 108 203 55 141 8.47e-19 81.6
MsG0280011121.01.T01 MTR_5g006100 41.085 129 52 4 1 122 1 112 3.71e-17 82.8
MsG0280011121.01.T01 MTR_2g101530 46.739 92 39 3 118 205 17 102 1.98e-16 75.5
MsG0280011121.01.T01 MTR_4g068100 86.538 52 7 0 271 322 92 143 2.38e-16 79.0
MsG0280011121.01.T01 MTR_5g071805 59.375 64 23 1 132 195 52 112 2.73e-16 74.3
MsG0280011121.01.T01 MTR_1g101180 49.333 75 32 2 118 188 232 304 3.84e-14 72.4
MsG0280011121.01.T01 MTR_5g068980 77.273 44 10 0 1 44 277 320 5.09e-14 72.0
MsG0280011121.01.T01 MTR_4g088830 51.351 74 30 3 119 188 25 96 9.49e-14 67.0
MsG0280011121.01.T01 MTR_3g014480 46.667 75 34 2 118 188 266 338 4.40e-13 69.7
MsG0280011121.01.T01 MTR_7g069450 46.667 75 34 2 118 188 482 554 7.80e-13 69.3
MsG0280011121.01.T01 MTR_4g124655 38.095 105 55 3 105 205 50 148 4.47e-12 63.5
MsG0280011121.01.T01 MTR_3g032550 47.887 71 33 1 118 184 342 412 5.80e-12 66.6
MsG0280011121.01.T01 MTR_1g051465 42.391 92 43 3 119 206 266 351 1.30e-11 65.1
MsG0280011121.01.T01 MTR_7g006230 42.391 92 43 3 119 206 407 492 2.08e-11 65.1
MsG0280011121.01.T01 MTR_1g016820 43.182 88 46 2 119 205 275 359 3.29e-11 63.9
MsG0280011121.01.T01 MTR_8g463980 43.478 92 40 4 119 205 409 493 3.49e-11 64.3
MsG0280011121.01.T01 MTR_2g067680 44.944 89 43 3 120 206 196 280 4.09e-11 63.2
MsG0280011121.01.T01 MTR_1g024975 42.697 89 45 3 119 205 18 102 4.15e-11 59.7
MsG0280011121.01.T01 MTR_5g068440 44.444 63 35 0 253 315 5 67 4.34e-11 62.8
MsG0280011121.01.T01 MTR_5g018790 41.304 92 44 3 119 206 625 710 6.48e-11 63.5
MsG0280011121.01.T01 MTR_1g035110 41.304 92 44 3 119 206 315 400 8.30e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011121.01.T01 AT1G06130 71.951 82 23 0 241 322 67 148 6.87e-35 129
MsG0280011121.01.T01 AT1G06130 71.951 82 23 0 241 322 68 149 7.01e-35 129
MsG0280011121.01.T01 AT2G31350 79.710 69 14 0 254 322 76 144 7.04e-34 125
MsG0280011121.01.T01 AT2G31350 79.710 69 14 0 254 322 75 143 1.50e-33 126
MsG0280011121.01.T01 AT2G31350 79.710 69 14 0 254 322 76 144 1.54e-33 126
MsG0280011121.01.T01 AT2G43430 71.951 82 23 0 241 322 25 106 6.98e-33 123
MsG0280011121.01.T01 AT2G43430 71.951 82 23 0 241 322 52 133 1.18e-32 123
MsG0280011121.01.T01 AT2G43430 71.951 82 23 0 241 322 70 151 2.02e-32 123
MsG0280011121.01.T01 AT3G10850 47.619 63 33 0 253 315 5 67 6.04e-13 68.2

Find 78 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGAGCTTGAATTGGAATT+TGG 0.175767 2:+79777447 None:intergenic
ATTGGAATTTGGACTTTAAA+TGG 0.193959 2:+79777458 None:intergenic
TGCTCATTTGTTGGTTTCTT+TGG 0.234305 2:+79776803 None:intergenic
ATGGAAGAGGACGGCAATTT+AGG 0.252616 2:-79776710 MsG0280011121.01.T01:CDS
TTCAACCAAACAGTAAAATA+TGG 0.270673 2:-79774131 MsG0280011121.01.T01:CDS
CCGTATCAATATCATGTAAA+AGG 0.307674 2:+79773156 None:intergenic
CAAGGGGTGAAGGCCGGATT+TGG 0.308734 2:-79777296 MsG0280011121.01.T01:CDS
GAAGGAAAGAGAGGAAGAAA+TGG 0.317726 2:+79774104 None:intergenic
ACACCGGTGGGTACCGGATT+AGG 0.340164 2:+79777407 None:intergenic
TAGTTAAATCCGTTATAAAA+AGG 0.355491 2:-79777265 MsG0280011121.01.T01:CDS
TTGAAGCTTTAGAAAGCATT+TGG 0.357702 2:+79774078 None:intergenic
GTAGAATTAAAAGCAAGATA+TGG 0.359608 2:-79773011 MsG0280011121.01.T01:CDS
GTTGGTTTCTTTGGCGGCTT+AGG 0.365979 2:+79776812 None:intergenic
GAAGGTTCCGGCGAAAGTTC+CGG 0.375030 2:-79777509 MsG0280011121.01.T01:CDS
TTACCAATTCGAGCTTGAAT+TGG 0.384880 2:+79777440 None:intergenic
TAGAATTAAAAGCAAGATAT+GGG 0.393374 2:-79773010 MsG0280011121.01.T01:CDS
TTTCAATGAACTCATGTCTA+AGG 0.394773 2:-79776837 MsG0280011121.01.T01:CDS
ATTCCAATTCAAGCTCGAAT+TGG 0.416057 2:-79777443 MsG0280011121.01.T01:CDS
AACTATACAAACACCAAATC+CGG 0.416881 2:+79777283 None:intergenic
AGATTGGTGAGGCGGAGAAT+TGG 0.428477 2:-79776889 MsG0280011121.01.T01:CDS
TGATGGCGTTGAACCGAAAC+CGG 0.440587 2:-79777540 MsG0280011121.01.T01:CDS
TCATTTGTTGGTTTCTTTGG+CGG 0.440650 2:+79776806 None:intergenic
TCCGTTACCACCGAGTTGTA+AGG 0.451156 2:-79776927 MsG0280011121.01.T01:CDS
GGAGTATCACCACAAACAAT+TGG 0.457028 2:+79776776 None:intergenic
CTTACTTGGGTTCGCGGACA+AGG 0.460150 2:-79777314 MsG0280011121.01.T01:CDS
AAGGAAAGAGAGGAAGAAAT+GGG 0.464158 2:+79774105 None:intergenic
AATGGTTTGAAATTAAAGCT+TGG 0.466863 2:+79777476 None:intergenic
AAAAGGAACAAGAATTTGAA+TGG 0.468392 2:-79776742 MsG0280011121.01.T01:CDS
CGCGGACAAGGGGTGAAGGC+CGG 0.470751 2:-79777302 MsG0280011121.01.T01:CDS
TATCACTAGACCTCTTAGAT+AGG 0.474894 2:-79776685 MsG0280011121.01.T01:intron
ATTGGATTGTGCTCATTTGT+TGG 0.489049 2:+79776794 None:intergenic
CAAATAACACCGGTGGGTAC+CGG 0.489889 2:+79777401 None:intergenic
TAAAATTCAAGAACCTAATC+CGG 0.492839 2:-79777420 MsG0280011121.01.T01:CDS
TTGCTCAATGCATCTATGAC+AGG 0.496375 2:+79773098 None:intergenic
TCCTTACAACTCGGTGGTAA+CGG 0.504173 2:+79776926 None:intergenic
GAGCACAATCCAATTGTTTG+TGG 0.504592 2:-79776785 MsG0280011121.01.T01:CDS
GACATCGCCGGAACTTTCGC+CGG 0.505259 2:+79777502 None:intergenic
GTTGACAAAGTCGCGGATGA+TGG 0.505449 2:-79777557 MsG0280011121.01.T01:CDS
GATATTGATACGGGCACAGT+TGG 0.506415 2:-79773146 MsG0280011121.01.T01:CDS
GGTTCGCGGACAAGGGGTGA+AGG 0.506689 2:-79777306 MsG0280011121.01.T01:CDS
TTAGAAAGCATTTGGAAGGA+AGG 0.508637 2:+79774086 None:intergenic
TTACTTGGGTTCGCGGACAA+GGG 0.520275 2:-79777313 MsG0280011121.01.T01:CDS
AACGAGAAGAGTTACTTACT+TGG 0.522654 2:-79777328 MsG0280011121.01.T01:CDS
GAGTTACTTACTTGGGTTCG+CGG 0.529370 2:-79777320 MsG0280011121.01.T01:CDS
ATTTGAATGGACGGAGGACA+TGG 0.532290 2:-79776729 MsG0280011121.01.T01:CDS
ACGAGAAGAGTTACTTACTT+GGG 0.533041 2:-79777327 MsG0280011121.01.T01:CDS
ACCTATTATACCTATCTAAG+AGG 0.543519 2:+79776675 None:intergenic
CGATGCAATGTGAAAGGAGT+GGG 0.555634 2:-79777232 MsG0280011121.01.T01:CDS
GGTATGCATAATTGTCACTC+AGG 0.558560 2:+79773177 None:intergenic
GAGTGGATGAACAACAAGAT+TGG 0.560520 2:-79776905 MsG0280011121.01.T01:CDS
ATTTGGAAGGAAGGAAAGAG+AGG 0.562364 2:+79774095 None:intergenic
GGAACAAGAATTTGAATGGA+CGG 0.569891 2:-79776738 MsG0280011121.01.T01:CDS
TACTTGGGTTCGCGGACAAG+GGG 0.570577 2:-79777312 MsG0280011121.01.T01:CDS
TTCATCCACTCCTTACAACT+CGG 0.574483 2:+79776917 None:intergenic
AAAGCTTGGTTTGACATCGC+CGG 0.579232 2:+79777490 None:intergenic
AGCTTTAGAAAGCATTTGGA+AGG 0.583539 2:+79774082 None:intergenic
AAAAGCAAGATATGGGGCAA+AGG 0.588467 2:-79773003 MsG0280011121.01.T01:CDS
ATGGACGGAGGACATGGAAG+AGG 0.590527 2:-79776723 MsG0280011121.01.T01:CDS
TACCACCGAGTTGTAAGGAG+TGG 0.593124 2:-79776922 MsG0280011121.01.T01:CDS
CACCAGTGTGATCATGATGA+TGG 0.604627 2:+79773039 None:intergenic
ATGACAGGCGTAGCTTCAGA+AGG 0.605200 2:+79773113 None:intergenic
ATTTGACGATGCAATGTGAA+AGG 0.605580 2:-79777238 MsG0280011121.01.T01:CDS
AGCTTCACAAATAACACCGG+TGG 0.606563 2:+79777394 None:intergenic
GAACAACAAGATTGGTGAGG+CGG 0.613841 2:-79776897 MsG0280011121.01.T01:CDS
GAACCTAATCCGGTACCCAC+CGG 0.615240 2:-79777410 MsG0280011121.01.T01:CDS
GCATAATTGTCACTCAGGCA+AGG 0.623799 2:+79773182 None:intergenic
CATCATCATGATCACACTGG+TGG 0.648943 2:-79773038 MsG0280011121.01.T01:CDS
GCTTCACAAATAACACCGGT+GGG 0.650731 2:+79777395 None:intergenic
AGAATTAAAAGCAAGATATG+GGG 0.659094 2:-79773009 MsG0280011121.01.T01:CDS
ACGGAGGACATGGAAGAGGA+CGG 0.669035 2:-79776719 MsG0280011121.01.T01:CDS
CACCATCATCATGATCACAC+TGG 0.670155 2:-79773041 MsG0280011121.01.T01:CDS
GGAGATGGTTGACAAAGTCG+CGG 0.681690 2:-79777564 None:intergenic
GATGAACAACAAGATTGGTG+AGG 0.693293 2:-79776900 MsG0280011121.01.T01:CDS
ACGAGCTTCACAAATAACAC+CGG 0.702698 2:+79777391 None:intergenic
ATCCACTCCTTACAACTCGG+TGG 0.704444 2:+79776920 None:intergenic
ACGATGCAATGTGAAAGGAG+TGG 0.718219 2:-79777233 MsG0280011121.01.T01:CDS
ACAAGAATTTGAATGGACGG+AGG 0.718243 2:-79776735 MsG0280011121.01.T01:CDS
GATGCAATGTGAAAGGAGTG+GGG 0.772349 2:-79777231 MsG0280011121.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAATAGTTACATAT+TGG + Chr2:79774010-79774029 None:intergenic 10.0%
!!! AAATAGAAAAGTATATAAAA+AGG - Chr2:79776322-79776341 MsG0280011121.01.T01:intron 10.0%
!!! AAATATATATCTCTTTTAAT+CGG + Chr2:79775294-79775313 None:intergenic 10.0%
!!! ATGAAATGAATTATTTTTTT+TGG - Chr2:79774068-79774087 MsG0280011121.01.T01:CDS 10.0%
!!! ATGATTATTCTTTTTTTTTT+AGG - Chr2:79776780-79776799 MsG0280011121.01.T01:CDS 10.0%
!!! CGTAAATATTTTTTTATTAA+AGG - Chr2:79775668-79775687 MsG0280011121.01.T01:intron 10.0%
!!! GAATTAAATTTCAATTTTTT+TGG - Chr2:79776561-79776580 MsG0280011121.01.T01:intron 10.0%
!!! TATTTCTCTATTTTATTTAA+CGG - Chr2:79775014-79775033 MsG0280011121.01.T01:intron 10.0%
!!! TTTTTTATCACAATTTTTTT+TGG - Chr2:79775860-79775879 MsG0280011121.01.T01:intron 10.0%
!! AAATATACAAATTACATAAC+CGG + Chr2:79773983-79774002 None:intergenic 15.0%
!! CTATAGTAAAAGATAAAATA+AGG + Chr2:79777186-79777205 None:intergenic 15.0%
!! GAAAATATACAAAGAAAAAA+AGG - Chr2:79775353-79775372 MsG0280011121.01.T01:intron 15.0%
!! GATTATAGTTTATCATATAT+AGG + Chr2:79776147-79776166 None:intergenic 15.0%
!! TGTATCATTTAATTAGATAT+TGG + Chr2:79775486-79775505 None:intergenic 15.0%
!!! AAATGAATTATTTTTTTTGG+TGG - Chr2:79774071-79774090 MsG0280011121.01.T01:CDS 15.0%
!!! ATTATAATAACTTGTTCTAT+AGG - Chr2:79776677-79776696 MsG0280011121.01.T01:intron 15.0%
!!! CACATTTTTTTGAAATAATT+AGG - Chr2:79777351-79777370 MsG0280011121.01.T01:CDS 15.0%
!!! TTATGTAATTTGTATATTTG+TGG - Chr2:79773984-79774003 MsG0280011121.01.T01:intron 15.0%
!! AGGTTCAAAATTAAACAATT+GGG - Chr2:79775119-79775138 MsG0280011121.01.T01:intron 20.0%
!! GTAATATTCAGTAAAATTAG+CGG + Chr2:79776108-79776127 None:intergenic 20.0%
!! GTCTCTAATTATTTGTAATT+TGG - Chr2:79774135-79774154 MsG0280011121.01.T01:CDS 20.0%
!! TAAGTGTGTTTAAATGATTA+CGG - Chr2:79774174-79774193 MsG0280011121.01.T01:intron 20.0%
!! TAGAATTAAAAGCAAGATAT+GGG - Chr2:79777548-79777567 MsG0280011121.01.T01:CDS 20.0%
!! TAGTTAAATCCGTTATAAAA+AGG - Chr2:79773293-79773312 MsG0280011121.01.T01:intron 20.0%
!!! CAATTTTTCATTTAGGTTAT+TGG + Chr2:79774909-79774928 None:intergenic 20.0%
!!! CTACTTTTATGAGTTTATAA+CGG - Chr2:79775797-79775816 MsG0280011121.01.T01:intron 20.0%
!!! TAGTTATAATCGATTGTTTT+AGG + Chr2:79775173-79775192 None:intergenic 20.0%
!!! TTAGTGTTGATATTTGATAA+TGG - Chr2:79776737-79776756 MsG0280011121.01.T01:CDS 20.0%
!!! TTTCAATTTTTTTGGTTGTT+AGG - Chr2:79776569-79776588 MsG0280011121.01.T01:intron 20.0%
! AAAAGGAACAAGAATTTGAA+TGG - Chr2:79773816-79773835 MsG0280011121.01.T01:intron 25.0%
! AACGACTCAAATTAAAATAG+TGG + Chr2:79774843-79774862 None:intergenic 25.0%
! AAGTGTGTTTAAATGATTAC+GGG - Chr2:79774175-79774194 MsG0280011121.01.T01:intron 25.0%
! AATTAAACAATTGGGCAATA+TGG - Chr2:79775127-79775146 MsG0280011121.01.T01:intron 25.0%
! ACGACTCAAATTAAAATAGT+GGG + Chr2:79774842-79774861 None:intergenic 25.0%
! AGAATTAAAAGCAAGATATG+GGG - Chr2:79777549-79777568 MsG0280011121.01.T01:CDS 25.0%
! AGTGTAATTTGATTATCTAC+TGG - Chr2:79777023-79777042 MsG0280011121.01.T01:intron 25.0%
! ATTGGAATTTGGACTTTAAA+TGG + Chr2:79773103-79773122 None:intergenic 25.0%
! ATTGTTAAACTGACGTAATT+AGG - Chr2:79774317-79774336 MsG0280011121.01.T01:intron 25.0%
! CGTCAGTTTAACAATATTAT+TGG + Chr2:79774312-79774331 None:intergenic 25.0%
! CGTTATAAACTCATAAAAGT+AGG + Chr2:79775799-79775818 None:intergenic 25.0%
! GAGGTTCAAAATTAAACAAT+TGG - Chr2:79775118-79775137 MsG0280011121.01.T01:intron 25.0%
! GTAGAATTAAAAGCAAGATA+TGG - Chr2:79777547-79777566 MsG0280011121.01.T01:CDS 25.0%
! TAAAATTCAAGAACCTAATC+CGG - Chr2:79773138-79773157 MsG0280011121.01.T01:CDS 25.0%
! TAAGTAATGCAAGCAATAAT+TGG + Chr2:79774111-79774130 None:intergenic 25.0%
! TAATAGGTTAGGAAAGTTAT+AGG - Chr2:79773898-79773917 MsG0280011121.01.T01:intron 25.0%
! TATTATTGGATAATACGACT+TGG + Chr2:79774298-79774317 None:intergenic 25.0%
! TGTAATACCACCAAAAAAAT+AGG + Chr2:79773939-79773958 None:intergenic 25.0%
! TTAGATAGGTATAATAGGTT+AGG - Chr2:79773887-79773906 MsG0280011121.01.T01:intron 25.0%
! TTCAACCAAACAGTAAAATA+TGG - Chr2:79776427-79776446 MsG0280011121.01.T01:intron 25.0%
! TTTAGAAAAGGAATTCTGTA+TGG - Chr2:79776846-79776865 MsG0280011121.01.T01:CDS 25.0%
!! AATCTAAAGCCTCTTAAAAA+TGG + Chr2:79774689-79774708 None:intergenic 25.0%
!! AATGGTTTGAAATTAAAGCT+TGG + Chr2:79773085-79773104 None:intergenic 25.0%
!! ACTTATTACATTGACTGAAA+AGG - Chr2:79776714-79776733 MsG0280011121.01.T01:CDS 25.0%
!! AGAGTTTAAGTTTAGTAGAA+GGG - Chr2:79775230-79775249 MsG0280011121.01.T01:intron 25.0%
!! CAAATACGACCTTTTTATAA+CGG + Chr2:79773305-79773324 None:intergenic 25.0%
!! CCTTTTACATGATATTGATA+CGG - Chr2:79777402-79777421 MsG0280011121.01.T01:CDS 25.0%
!! CTACACACAATTTTTCATTT+AGG + Chr2:79774916-79774935 None:intergenic 25.0%
!! CTTTTACATGATATTGATAC+GGG - Chr2:79777403-79777422 MsG0280011121.01.T01:CDS 25.0%
!! TTGTGAAAAAAACGATGTTT+TGG - Chr2:79774257-79774276 MsG0280011121.01.T01:intron 25.0%
!! TTTTTACAACAAATGCAAGA+TGG - Chr2:79773203-79773222 MsG0280011121.01.T01:intron 25.0%
!!! AATTCTTGTTCCTTTTTTTG+CGG + Chr2:79773812-79773831 None:intergenic 25.0%
!!! ACTATTTTAATTTGAGTCGT+TGG - Chr2:79774842-79774861 MsG0280011121.01.T01:intron 25.0%
!!! ATTTGTTGTAAAAAATGAGG+CGG + Chr2:79773197-79773216 None:intergenic 25.0%
!!! TGCATTTGTTGTAAAAAATG+AGG + Chr2:79773200-79773219 None:intergenic 25.0%
AAAACAAAGTTGCTCACATT+AGG + Chr2:79776829-79776848 None:intergenic 30.0%
AACTATACAAACACCAAATC+CGG + Chr2:79773278-79773297 None:intergenic 30.0%
AATAAAGACTCGTTTGGTAA+GGG - Chr2:79775751-79775770 MsG0280011121.01.T01:intron 30.0%
AATAAGCTGTAAATCCAAAC+TGG - Chr2:79777260-79777279 MsG0280011121.01.T01:CDS 30.0%
AATAATGTTTGCCATTGTGA+TGG - Chr2:79775608-79775627 MsG0280011121.01.T01:intron 30.0%
AATAATTGGTGTGACATAAC+CGG + Chr2:79774097-79774116 None:intergenic 30.0%
AATCACATGAAGATAGTGAT+CGG + Chr2:79773597-79773616 None:intergenic 30.0%
ACCTATTATACCTATCTAAG+AGG + Chr2:79773886-79773905 None:intergenic 30.0%
ACCTCTTAGATAGGTATAAT+AGG - Chr2:79773882-79773901 MsG0280011121.01.T01:intron 30.0%
ATAATGTTTGCCATTGTGAT+GGG - Chr2:79775609-79775628 MsG0280011121.01.T01:intron 30.0%
ATCGTTTCCTAGGTTTAATT+TGG + Chr2:79775068-79775087 None:intergenic 30.0%
ATGCATTGAGCAAGAAAAAT+CGG - Chr2:79777470-79777489 MsG0280011121.01.T01:CDS 30.0%
CAGCAAAAATTATTGGTGAA+AGG + Chr2:79774766-79774785 None:intergenic 30.0%
CCGTATCAATATCATGTAAA+AGG + Chr2:79777405-79777424 None:intergenic 30.0%
CTACTAAACTTAAACTCTGT+TGG + Chr2:79775228-79775247 None:intergenic 30.0%
GAATTCTGTATGGATTTATG+CGG - Chr2:79776856-79776875 MsG0280011121.01.T01:CDS 30.0%
GATTAGATTACAACTTTGTG+AGG + Chr2:79774887-79774906 None:intergenic 30.0%
TAATAAAGACTCGTTTGGTA+AGG - Chr2:79775750-79775769 MsG0280011121.01.T01:intron 30.0%
TCATGTAAGTGTAGTTCAAT+TGG + Chr2:79775986-79776005 None:intergenic 30.0%
TGAAAAAAAAAAACGAACCC+TGG + Chr2:79776536-79776555 None:intergenic 30.0%
TGTAGTATATATCGTTTCCT+AGG + Chr2:79775078-79775097 None:intergenic 30.0%
TGTCATAATAAAGACTCGTT+TGG - Chr2:79775745-79775764 MsG0280011121.01.T01:intron 30.0%
TTCAAGCAATTAAAACATCG+AGG - Chr2:79775099-79775118 MsG0280011121.01.T01:intron 30.0%
TTTCAATGAACTCATGTCTA+AGG - Chr2:79773721-79773740 MsG0280011121.01.T01:intron 30.0%
! AAATGTGTTGATGAAGAAGA+AGG - Chr2:79776361-79776380 MsG0280011121.01.T01:intron 30.0%
! AATGTGTTGATGAAGAAGAA+GGG - Chr2:79776362-79776381 MsG0280011121.01.T01:intron 30.0%
! ATTTGAAGCTTGCTTAATTC+TGG - Chr2:79776595-79776614 MsG0280011121.01.T01:intron 30.0%
! CAGAGTTTAAGTTTAGTAGA+AGG - Chr2:79775229-79775248 MsG0280011121.01.T01:intron 30.0%
! CTATCTTCATGTGATTTTGA+AGG - Chr2:79773601-79773620 MsG0280011121.01.T01:intron 30.0%
! GAATTGGCATTTTGCATTTT+TGG - Chr2:79773685-79773704 MsG0280011121.01.T01:intron 30.0%
! GATCAAAATTGATTAGTCCA+TGG - Chr2:79775036-79775055 MsG0280011121.01.T01:intron 30.0%
! GTTCAATTACGAGCATTTTA+GGG - Chr2:79774339-79774358 MsG0280011121.01.T01:intron 30.0%
!! CTAAAACTTGTTGAACATTG+AGG - Chr2:79776226-79776245 MsG0280011121.01.T01:intron 30.0%
!! TTGAAGCTTTAGAAAGCATT+TGG + Chr2:79776483-79776502 None:intergenic 30.0%
!!! ATAAGTTTTGTGAGAGTGTT+TGG - Chr2:79777047-79777066 MsG0280011121.01.T01:intron 30.0%
!!! ATTCTTGTTCCTTTTTTTGC+GGG + Chr2:79773811-79773830 None:intergenic 30.0%
!!! GAATTATTTTTTTTGGTGGC+CGG - Chr2:79774075-79774094 MsG0280011121.01.T01:CDS 30.0%
!!! GAGCAACTTTGTTTTAGAAA+AGG - Chr2:79776834-79776853 MsG0280011121.01.T01:CDS 30.0%
!!! TAAGTTTTGTGAGAGTGTTT+GGG - Chr2:79777048-79777067 MsG0280011121.01.T01:intron 30.0%
!!! TTTTTGGTTAAGTAGTCTAC+TGG - Chr2:79775876-79775895 MsG0280011121.01.T01:intron 30.0%
!!! TTTTTTTTTAGGTGAGAGCT+GGG - Chr2:79776791-79776810 MsG0280011121.01.T01:CDS 30.0%
!!! TTTTTTTTTTAGGTGAGAGC+TGG - Chr2:79776790-79776809 MsG0280011121.01.T01:CDS 30.0%
AAATGATTACGGGTCATTAC+CGG - Chr2:79774185-79774204 MsG0280011121.01.T01:intron 35.0%
AACGAGAAGAGTTACTTACT+TGG - Chr2:79773230-79773249 MsG0280011121.01.T01:intron 35.0%
AAGGAAAGAGAGGAAGAAAT+GGG + Chr2:79776456-79776475 None:intergenic 35.0%
ACAATGGCAAACATTATTGC+TGG + Chr2:79775606-79775625 None:intergenic 35.0%
ACGAGAAGAGTTACTTACTT+GGG - Chr2:79773231-79773250 MsG0280011121.01.T01:intron 35.0%
ACTGCAATCAAAGACGAAAA+TGG - Chr2:79774802-79774821 MsG0280011121.01.T01:intron 35.0%
AGGTTAGGAAAGTTATAGGT+CGG - Chr2:79773902-79773921 MsG0280011121.01.T01:intron 35.0%
ATCACACATAACGATCCAAA+CGG + Chr2:79774230-79774249 None:intergenic 35.0%
ATCACATGAAGATAGTGATC+GGG + Chr2:79773596-79773615 None:intergenic 35.0%
ATGTGCATTGAATGCAGTTT+GGG + Chr2:79774371-79774390 None:intergenic 35.0%
ATTCCAATTCAAGCTCGAAT+TGG - Chr2:79773115-79773134 MsG0280011121.01.T01:CDS 35.0%
ATTGGATTGTGCTCATTTGT+TGG + Chr2:79773767-79773786 None:intergenic 35.0%
ATTGTATCATCCCATCACAA+TGG + Chr2:79775622-79775641 None:intergenic 35.0%
ATTTGACGATGCAATGTGAA+AGG - Chr2:79773320-79773339 MsG0280011121.01.T01:intron 35.0%
GACAAAGTCAATAGAACAAC+GGG + Chr2:79773479-79773498 None:intergenic 35.0%
GGAACAAGAATTTGAATGGA+CGG - Chr2:79773820-79773839 MsG0280011121.01.T01:intron 35.0%
GGACAAAGTCAATAGAACAA+CGG + Chr2:79773480-79773499 None:intergenic 35.0%
GTTAGAGCCAAATTAAACCT+AGG - Chr2:79775058-79775077 MsG0280011121.01.T01:intron 35.0%
TAAAAAGGAGAGAGAGAAAG+AGG - Chr2:79776337-79776356 MsG0280011121.01.T01:intron 35.0%
TAAGCAAAGACACATGATGT+TGG + Chr2:79773570-79773589 None:intergenic 35.0%
TACCAGAGACATTATGTGTT+GGG + Chr2:79775959-79775978 None:intergenic 35.0%
TATCACTAGACCTCTTAGAT+AGG - Chr2:79773873-79773892 MsG0280011121.01.T01:intron 35.0%
TCAAAGTGTGTGAATTGTGA+GGG + Chr2:79774982-79775001 None:intergenic 35.0%
TCCAAATTACACAAATTCGC+CGG + Chr2:79774207-79774226 None:intergenic 35.0%
TGATAACATAACCGCAGATT+AGG + Chr2:79777333-79777352 None:intergenic 35.0%
TGTGCAGCAGCAAAAATTAT+TGG + Chr2:79774773-79774792 None:intergenic 35.0%
TTACCAATTCGAGCTTGAAT+TGG + Chr2:79773121-79773140 None:intergenic 35.0%
TTCCTCATTGCAGATTGAAT+TGG - Chr2:79776965-79776984 MsG0280011121.01.T01:intron 35.0%
TTCGAGCTTGAATTGGAATT+TGG + Chr2:79773114-79773133 None:intergenic 35.0%
TTTGTGTAATTTGGACCGTT+TGG - Chr2:79774212-79774231 MsG0280011121.01.T01:intron 35.0%
! ATGTGTTGATGAAGAAGAAG+GGG - Chr2:79776363-79776382 MsG0280011121.01.T01:intron 35.0%
! ATGTTGGAATGTGGATTAAG+TGG + Chr2:79773554-79773573 None:intergenic 35.0%
! GGTTCAATTACGAGCATTTT+AGG - Chr2:79774338-79774357 MsG0280011121.01.T01:intron 35.0%
! GGTTGCCATATTTTACTGTT+TGG + Chr2:79776435-79776454 None:intergenic 35.0%
!! AGCTTTAGAAAGCATTTGGA+AGG + Chr2:79776479-79776498 None:intergenic 35.0%
!! CTTCATGTGATTTTGAAGGA+AGG - Chr2:79773605-79773624 MsG0280011121.01.T01:intron 35.0%
!! GTTTAATTTGGCTCTAACCA+TGG + Chr2:79775056-79775075 None:intergenic 35.0%
!! TCATTTGTTGGTTTCTTTGG+CGG + Chr2:79773755-79773774 None:intergenic 35.0%
!! TGCTCATTTGTTGGTTTCTT+TGG + Chr2:79773758-79773777 None:intergenic 35.0%
!! TTAGAAAGCATTTGGAAGGA+AGG + Chr2:79776475-79776494 None:intergenic 35.0%
!!! ATTACGAGCATTTTAGGGTT+TGG - Chr2:79774344-79774363 MsG0280011121.01.T01:intron 35.0%
!!! TGGTGTTCGTCCTATTTTTT+TGG - Chr2:79773926-79773945 MsG0280011121.01.T01:intron 35.0%
!!! TGTTCGTCCTATTTTTTTGG+TGG - Chr2:79773929-79773948 MsG0280011121.01.T01:intron 35.0%
!!! TTACACCCCGACATATTTTT+TGG - Chr2:79773954-79773973 MsG0280011121.01.T01:intron 35.0%
!!! TTCTTGTTCCTTTTTTTGCG+GGG + Chr2:79773810-79773829 None:intergenic 35.0%
AAAAAACGAACCCTGGAACA+AGG + Chr2:79776529-79776548 None:intergenic 40.0%
AAAAGCAAGATATGGGGCAA+AGG - Chr2:79777555-79777574 MsG0280011121.01.T01:CDS 40.0%
ACAAGAATTTGAATGGACGG+AGG - Chr2:79773823-79773842 MsG0280011121.01.T01:intron 40.0%
ACAAGGAAAAAAAGCGGACA+TGG + Chr2:79776512-79776531 None:intergenic 40.0%
ACATTCACACACATCATGTG+TGG - Chr2:79775901-79775920 MsG0280011121.01.T01:intron 40.0%
ACCAGAGACATTATGTGTTG+GGG + Chr2:79775958-79775977 None:intergenic 40.0%
ACCGGCGAATTTGTGTAATT+TGG - Chr2:79774203-79774222 MsG0280011121.01.T01:intron 40.0%
ACGAGCTTCACAAATAACAC+CGG + Chr2:79773170-79773189 None:intergenic 40.0%
AGACAAGGAAGAAACCGATA+TGG - Chr2:79773365-79773384 MsG0280011121.01.T01:intron 40.0%
AGACACATGATGTTGGAATG+TGG + Chr2:79773563-79773582 None:intergenic 40.0%
ATCTTGAGTGCACACAGTTT+AGG + Chr2:79775403-79775422 None:intergenic 40.0%
ATTTGGAAGGAAGGAAAGAG+AGG + Chr2:79776466-79776485 None:intergenic 40.0%
CACCAATTCAATCTGCAATG+AGG + Chr2:79776970-79776989 None:intergenic 40.0%
CCTGGAACAAGGAAAAAAAG+CGG + Chr2:79776518-79776537 None:intergenic 40.0%
CTAAGTTTCCCAAGCTGATA+GGG - Chr2:79777284-79777303 MsG0280011121.01.T01:CDS 40.0%
CTACCAGAGACATTATGTGT+TGG + Chr2:79775960-79775979 None:intergenic 40.0%
CTGCAATGAGGAAGACATAT+TGG + Chr2:79776958-79776977 None:intergenic 40.0%
GAAGGAAAGAGAGGAAGAAA+TGG + Chr2:79776457-79776476 None:intergenic 40.0%
GACAAGGAAGAAACCGATAT+GGG - Chr2:79773366-79773385 MsG0280011121.01.T01:intron 40.0%
GAGCACAATCCAATTGTTTG+TGG - Chr2:79773773-79773792 MsG0280011121.01.T01:intron 40.0%
GAGTGGATGAACAACAAGAT+TGG - Chr2:79773653-79773672 MsG0280011121.01.T01:intron 40.0%
GATGAACAACAAGATTGGTG+AGG - Chr2:79773658-79773677 MsG0280011121.01.T01:intron 40.0%
GATGTGCATTGAATGCAGTT+TGG + Chr2:79774372-79774391 None:intergenic 40.0%
GCAATAATGTGACCCATATC+CGG + Chr2:79773440-79773459 None:intergenic 40.0%
GGTATGCATAATTGTCACTC+AGG + Chr2:79777384-79777403 None:intergenic 40.0%
GTCAAAGTGTGTGAATTGTG+AGG + Chr2:79774983-79775002 None:intergenic 40.0%
GTGTACAATGTGACCCATAT+CGG + Chr2:79773382-79773401 None:intergenic 40.0%
GTTTCTTCCTTGTCTTAGGT+GGG + Chr2:79773360-79773379 None:intergenic 40.0%
TAAAAATGGTCCAGCAACGA+GGG + Chr2:79774675-79774694 None:intergenic 40.0%
TACAACTTTGTGAGGTCTTG+TGG + Chr2:79774879-79774898 None:intergenic 40.0%
TAGGAAAGTTATAGGTCGGT+TGG - Chr2:79773906-79773925 MsG0280011121.01.T01:intron 40.0%
TATACAACCCACCTAAGACA+AGG - Chr2:79773350-79773369 MsG0280011121.01.T01:intron 40.0%
TATGCTGAAAGCCTAATCTG+CGG - Chr2:79777319-79777338 MsG0280011121.01.T01:CDS 40.0%
TATGGGTCACATTGTACACT+TGG - Chr2:79773383-79773402 MsG0280011121.01.T01:intron 40.0%
TCTTTGATTGCAGTTGTGGT+TGG + Chr2:79774796-79774815 None:intergenic 40.0%
TGAATTGTGAGGGTCTTTGA+TGG + Chr2:79774972-79774991 None:intergenic 40.0%
TTAAAAATGGTCCAGCAACG+AGG + Chr2:79774676-79774695 None:intergenic 40.0%
TTCAGAAACCCTATCAGCTT+GGG + Chr2:79777295-79777314 None:intergenic 40.0%
TTCATCCACTCCTTACAACT+CGG + Chr2:79773644-79773663 None:intergenic 40.0%
TTCGTCTTTGATTGCAGTTG+TGG + Chr2:79774800-79774819 None:intergenic 40.0%
TTGCTCAATGCATCTATGAC+AGG + Chr2:79777463-79777482 None:intergenic 40.0%
! ATCGGTTTCTTCCTTGTCTT+AGG + Chr2:79773364-79773383 None:intergenic 40.0%
! ATTGACTTTGTCCGAAACGA+CGG - Chr2:79773487-79773506 MsG0280011121.01.T01:intron 40.0%
! GGAGTATCACCACAAACAAT+TGG + Chr2:79773785-79773804 None:intergenic 40.0%
! TTGGAATGTGGATTAAGTGG+AGG + Chr2:79773551-79773570 None:intergenic 40.0%
!! GTTGCTGGACCATTTTTAAG+AGG - Chr2:79774677-79774696 MsG0280011121.01.T01:intron 40.0%
!!! CGCTTTTTTTCCTTGTTCCA+GGG - Chr2:79776516-79776535 MsG0280011121.01.T01:intron 40.0%
AAAAAAAGCGGACATGGCAG+TGG + Chr2:79776506-79776525 None:intergenic 45.0%
ACACATCATGTGTGGAGAAG+TGG - Chr2:79775909-79775928 MsG0280011121.01.T01:intron 45.0%
ACCCCAACACATAATGTCTC+TGG - Chr2:79775954-79775973 MsG0280011121.01.T01:intron 45.0%
ACGATGCAATGTGAAAGGAG+TGG - Chr2:79773325-79773344 MsG0280011121.01.T01:intron 45.0%
AGACATTATGTGTTGGGGTC+GGG + Chr2:79775953-79775972 None:intergenic 45.0%
AGATAAGTGGATGACCACTC+CGG - Chr2:79773418-79773437 MsG0280011121.01.T01:intron 45.0%
AGCTTCACAAATAACACCGG+TGG + Chr2:79773167-79773186 None:intergenic 45.0%
ATATAAAACGCTGCGTGGAG+GGG - Chr2:79776893-79776912 MsG0280011121.01.T01:CDS 45.0%
ATGGAAGAGGACGGCAATTT+AGG - Chr2:79773848-79773867 MsG0280011121.01.T01:intron 45.0%
ATTCTTAAGTCCCTCGTTGC+TGG - Chr2:79774662-79774681 MsG0280011121.01.T01:intron 45.0%
ATTTGAATGGACGGAGGACA+TGG - Chr2:79773829-79773848 MsG0280011121.01.T01:intron 45.0%
CACCAGTGTGATCATGATGA+TGG + Chr2:79777522-79777541 None:intergenic 45.0%
CACCATCATCATGATCACAC+TGG - Chr2:79777517-79777536 MsG0280011121.01.T01:CDS 45.0%
CATATAAAACGCTGCGTGGA+GGG - Chr2:79776892-79776911 MsG0280011121.01.T01:CDS 45.0%
CATCATCATGATCACACTGG+TGG - Chr2:79777520-79777539 MsG0280011121.01.T01:CDS 45.0%
CCGGCCACCAAAAAATATGT+CGG + Chr2:79773964-79773983 None:intergenic 45.0%
CCTAAGTTTCCCAAGCTGAT+AGG - Chr2:79777283-79777302 MsG0280011121.01.T01:CDS 45.0%
CCTATCAGCTTGGGAAACTT+AGG + Chr2:79777286-79777305 None:intergenic 45.0%
CGATGCAATGTGAAAGGAGT+GGG - Chr2:79773326-79773345 MsG0280011121.01.T01:intron 45.0%
CGGCCACCAAAAAATATGTC+GGG + Chr2:79773963-79773982 None:intergenic 45.0%
CTTCAGAAACCCTATCAGCT+TGG + Chr2:79777296-79777315 None:intergenic 45.0%
GAACAACAAGATTGGTGAGG+CGG - Chr2:79773661-79773680 MsG0280011121.01.T01:intron 45.0%
GAGACATTATGTGTTGGGGT+CGG + Chr2:79775954-79775973 None:intergenic 45.0%
GAGTTACTTACTTGGGTTCG+CGG - Chr2:79773238-79773257 MsG0280011121.01.T01:intron 45.0%
GATATTGATACGGGCACAGT+TGG - Chr2:79777412-79777431 MsG0280011121.01.T01:CDS 45.0%
GATGCAATGTGAAAGGAGTG+GGG - Chr2:79773327-79773346 MsG0280011121.01.T01:intron 45.0%
GCATAATTGTCACTCAGGCA+AGG + Chr2:79777379-79777398 None:intergenic 45.0%
GCGTTAGTTAACATGCGCAA+GGG - Chr2:79774586-79774605 MsG0280011121.01.T01:intron 45.0%
GCTTCACAAATAACACCGGT+GGG + Chr2:79773166-79773185 None:intergenic 45.0%
GGCCACCAAAAAATATGTCG+GGG + Chr2:79773962-79773981 None:intergenic 45.0%
GGTTTCTTCCTTGTCTTAGG+TGG + Chr2:79773361-79773380 None:intergenic 45.0%
GTGGAGAAGTGGAAAATCCT+GGG - Chr2:79775920-79775939 MsG0280011121.01.T01:intron 45.0%
TGCGTTAGTTAACATGCGCA+AGG - Chr2:79774585-79774604 MsG0280011121.01.T01:intron 45.0%
TGTGGAGAAGTGGAAAATCC+TGG - Chr2:79775919-79775938 MsG0280011121.01.T01:intron 45.0%
TTGACTTTGTCCGAAACGAC+GGG - Chr2:79773488-79773507 MsG0280011121.01.T01:intron 45.0%
TTGGGAAACTTAGGCCAGTT+TGG + Chr2:79777277-79777296 None:intergenic 45.0%
! AAAGCTTGGTTTGACATCGC+CGG + Chr2:79773071-79773090 None:intergenic 45.0%
! TCCTTACAACTCGGTGGTAA+CGG + Chr2:79773635-79773654 None:intergenic 45.0%
! TGTTGATGAAGAAGAAGGGG+TGG - Chr2:79776366-79776385 MsG0280011121.01.T01:intron 45.0%
!! GATTAAGTGGAGGAGCACTT+CGG + Chr2:79773541-79773560 None:intergenic 45.0%
!!! CACCCCGACATATTTTTTGG+TGG - Chr2:79773957-79773976 MsG0280011121.01.T01:intron 45.0%
!!! CCGACATATTTTTTGGTGGC+CGG - Chr2:79773961-79773980 MsG0280011121.01.T01:intron 45.0%
!!! CCGCTTTTTTTCCTTGTTCC+AGG - Chr2:79776515-79776534 MsG0280011121.01.T01:intron 45.0%
!!! CCTTCTTTTTTGGCCGGTTT+CGG + Chr2:79773034-79773053 None:intergenic 45.0%
!!! TGTTCCTTTTTTTGCGGGGT+GGG + Chr2:79773806-79773825 None:intergenic 45.0%
!!! TTCGCCGGAACCTTCTTTTT+TGG + Chr2:79773044-79773063 None:intergenic 45.0%
!!! TTGTTCCTTTTTTTGCGGGG+TGG + Chr2:79773807-79773826 None:intergenic 45.0%
!! AAAAAAATTGAAATTTAATT+CGG + Chr2:79776562-79776581 None:intergenic 5.0%
AACATGCGCAAGGGCAAAAC+TGG - Chr2:79774595-79774614 MsG0280011121.01.T01:intron 50.0%
AATGTGACCCATATCCGGAG+TGG + Chr2:79773435-79773454 None:intergenic 50.0%
ACATACACCACCCGTCGTTT+CGG + Chr2:79773501-79773520 None:intergenic 50.0%
ACGCCATATAAAACGCTGCG+TGG - Chr2:79776888-79776907 MsG0280011121.01.T01:CDS 50.0%
ACGTGAGTTAACTCGCGCAT+AGG + Chr2:79774501-79774520 None:intergenic 50.0%
AGATTGGTGAGGCGGAGAAT+TGG - Chr2:79773669-79773688 MsG0280011121.01.T01:intron 50.0%
ATCCACTCCTTACAACTCGG+TGG + Chr2:79773641-79773660 None:intergenic 50.0%
ATGACAGGCGTAGCTTCAGA+AGG + Chr2:79777448-79777467 None:intergenic 50.0%
CAAATAACACCGGTGGGTAC+CGG + Chr2:79773160-79773179 None:intergenic 50.0%
CCATATAAAACGCTGCGTGG+AGG - Chr2:79776891-79776910 MsG0280011121.01.T01:CDS 50.0%
CCGAAACCGGCCAAAAAAGA+AGG - Chr2:79773031-79773050 MsG0280011121.01.T01:CDS 50.0%
CCGGCCAAAAAAGAAGGTTC+CGG - Chr2:79773037-79773056 MsG0280011121.01.T01:CDS 50.0%
GACATTATGTGTTGGGGTCG+GGG + Chr2:79775952-79775971 None:intergenic 50.0%
GAGTGCACACAGTTTAGGCA+TGG + Chr2:79775398-79775417 None:intergenic 50.0%
GGAGTGGTCATCCACTTATC+TGG + Chr2:79773419-79773438 None:intergenic 50.0%
GTGGTCATCCACTTATCTGG+AGG + Chr2:79773416-79773435 None:intergenic 50.0%
GTTGACAAAGTCGCGGATGA+TGG - Chr2:79773001-79773020 MsG0280011121.01.T01:CDS 50.0%
TACCACCGAGTTGTAAGGAG+TGG - Chr2:79773636-79773655 MsG0280011121.01.T01:intron 50.0%
TACTCCCACCCCGCAAAAAA+AGG - Chr2:79773799-79773818 MsG0280011121.01.T01:intron 50.0%
TCCGTTACCACCGAGTTGTA+AGG - Chr2:79773631-79773650 MsG0280011121.01.T01:intron 50.0%
TGAGAGCTGGGTTTAGTGTC+TGG - Chr2:79776803-79776822 MsG0280011121.01.T01:CDS 50.0%
TGATGAAGAAGAAGGGGTGG+TGG - Chr2:79776369-79776388 MsG0280011121.01.T01:intron 50.0%
TGGATGACCACTCCGGATAT+GGG - Chr2:79773425-79773444 MsG0280011121.01.T01:intron 50.0%
TTACTTGGGTTCGCGGACAA+GGG - Chr2:79773245-79773264 MsG0280011121.01.T01:intron 50.0%
! ACGCAGCGTTTTATATGGCG+TGG + Chr2:79776889-79776908 None:intergenic 50.0%
! CCTCCACGCAGCGTTTTATA+TGG + Chr2:79776894-79776913 None:intergenic 50.0%
! GTGAGGGTCTTTGATGGACA+AGG + Chr2:79774966-79774985 None:intergenic 50.0%
! GTTGGTTTCTTTGGCGGCTT+AGG + Chr2:79773749-79773768 None:intergenic 50.0%
! TGATGGCGTTGAACCGAAAC+CGG - Chr2:79773018-79773037 MsG0280011121.01.T01:CDS 50.0%
!!! CCGGAACCTTCTTTTTTGGC+CGG + Chr2:79773040-79773059 None:intergenic 50.0%
ACGGAGGACATGGAAGAGGA+CGG - Chr2:79773839-79773858 MsG0280011121.01.T01:intron 55.0%
ACTTTGTCCGAAACGACGGG+TGG - Chr2:79773491-79773510 MsG0280011121.01.T01:intron 55.0%
ATGGACGGAGGACATGGAAG+AGG - Chr2:79773835-79773854 MsG0280011121.01.T01:intron 55.0%
CTTACTTGGGTTCGCGGACA+AGG - Chr2:79773244-79773263 MsG0280011121.01.T01:intron 55.0%
GAACCTAATCCGGTACCCAC+CGG - Chr2:79773148-79773167 MsG0280011121.01.T01:CDS 55.0%
GAAGGTTCCGGCGAAAGTTC+CGG - Chr2:79773049-79773068 MsG0280011121.01.T01:CDS 55.0%
GCAAAACTGGCATGGCTGCA+GGG - Chr2:79774608-79774627 MsG0280011121.01.T01:intron 55.0%
GTCGCTCACTTAGAGTGGCT+CGG - Chr2:79776919-79776938 MsG0280011121.01.T01:CDS 55.0%
GTGGATGACCACTCCGGATA+TGG - Chr2:79773424-79773443 MsG0280011121.01.T01:intron 55.0%
GTGTTGCGCCTCCAGATAAG+TGG - Chr2:79773405-79773424 MsG0280011121.01.T01:intron 55.0%
TACTTGGGTTCGCGGACAAG+GGG - Chr2:79773246-79773265 MsG0280011121.01.T01:intron 55.0%
! GGCTAGTCGCTCACTTAGAG+TGG - Chr2:79776914-79776933 MsG0280011121.01.T01:CDS 55.0%
! TGAAGAAGAAGGGGTGGTGG+TGG - Chr2:79776372-79776391 MsG0280011121.01.T01:intron 55.0%
!! AGTGGAGGAGCACTTCGGAT+TGG + Chr2:79773536-79773555 None:intergenic 55.0%
!! GTGGAGGAGCACTTCGGATT+GGG + Chr2:79773535-79773554 None:intergenic 55.0%
AGGGTGCGAGCAAAACGTGC+TGG - Chr2:79774627-79774646 MsG0280011121.01.T01:intron 60.0%
CAAGGGGTGAAGGCCGGATT+TGG - Chr2:79773262-79773281 MsG0280011121.01.T01:intron 60.0%
GACATCGCCGGAACTTTCGC+CGG + Chr2:79773059-79773078 None:intergenic 60.0%
GCGCAAGGGCAAAACTGGCA+TGG - Chr2:79774600-79774619 MsG0280011121.01.T01:intron 60.0%
GGCAAAACTGGCATGGCTGC+AGG - Chr2:79774607-79774626 MsG0280011121.01.T01:intron 60.0%
GGGTGCGAGCAAAACGTGCT+GGG - Chr2:79774628-79774647 MsG0280011121.01.T01:intron 60.0%
TGCGAGCAAAACGTGCTGGG+TGG - Chr2:79774631-79774650 MsG0280011121.01.T01:intron 60.0%
!! ACACCGGTGGGTACCGGATT+AGG + Chr2:79773154-79773173 None:intergenic 60.0%
GGTTCGCGGACAAGGGGTGA+AGG - Chr2:79773252-79773271 MsG0280011121.01.T01:intron 65.0%
CGCGGACAAGGGGTGAAGGC+CGG - Chr2:79773256-79773275 MsG0280011121.01.T01:intron 70.0%
TGGGGTCGGGGTTCGAACCC+AGG + Chr2:79775940-79775959 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 79772998 79777582 79772998 ID=MsG0280011121.01;Name=MsG0280011121.01
Chr2 mRNA 79772998 79777582 79772998 ID=MsG0280011121.01.T01;Parent=MsG0280011121.01;Name=MsG0280011121.01.T01;_AED=0.73;_eAED=0.73;_QI=0|0|0|0.75|0.33|0.75|4|0|322
Chr2 exon 79777232 79777582 79777232 ID=MsG0280011121.01.T01:exon:10120;Parent=MsG0280011121.01.T01
Chr2 exon 79776686 79776957 79776686 ID=MsG0280011121.01.T01:exon:10119;Parent=MsG0280011121.01.T01
Chr2 exon 79774043 79774178 79774043 ID=MsG0280011121.01.T01:exon:10118;Parent=MsG0280011121.01.T01
Chr2 exon 79772998 79773207 79772998 ID=MsG0280011121.01.T01:exon:10117;Parent=MsG0280011121.01.T01
Chr2 CDS 79777232 79777582 79777232 ID=MsG0280011121.01.T01:cds;Parent=MsG0280011121.01.T01
Chr2 CDS 79776686 79776957 79776686 ID=MsG0280011121.01.T01:cds;Parent=MsG0280011121.01.T01
Chr2 CDS 79774043 79774178 79774043 ID=MsG0280011121.01.T01:cds;Parent=MsG0280011121.01.T01
Chr2 CDS 79772998 79773207 79772998 ID=MsG0280011121.01.T01:cds;Parent=MsG0280011121.01.T01
Gene Sequence

>MsG0280011121.01.T01

ATGGTTGACAAAGTCGCGGATGATGGCGTTGAACCGAAACCGGCCAAAAAAGAAGGTTCCGGCGAAAGTTCCGGCGATGTCAAACCAAGCTTTAATTTCAAACCATTTAAAGTCCAAATTCCAATTCAAGCTCGAATTGGTAAAATTCAAGAACCTAATCCGGTACCCACCGGTGTTATTTGTGAAGCTCGTGACACCGCCTCATTTTTTACAACAAATGCAAGATGGAGAGAACGAGAAGAGTTACTTACTTGGGTTCGCGGACAAGGGGTGAAGGCCGGATTTGGTGTTTGTATAGTTAAATCCGTTATAAAAAGGTCGTATTTGACGATGCAATGTGAAAGGAGTGGGGAAGGTTGTCCGTTACCACCGAGTTGTAAGGAGTGGATGAACAACAAGATTGGTGAGGCGGAGAATTGGCATTTTGCATTTTTGGATAGACAAAACGCTTTCAATGAACTCATGTCTAAGGAGCCTAAGCCGCCAAAGAAACCAACAAATGAGCACAATCCAATTGTTTGTGGTGATACTCCCACCCCGCAAAAAAAGGAACAAGAATTTGAATGGACGGAGGACATGGAAGAGGACGGCAATTTAGGAATATCACTAGACCTCTTAGATAGACGAAAGAAGAAAGCAAACTTCATTTTCAACCAAACAGTAAAATATGGCAACCCATTTCTTCCTCTCTTTCCTTCCTTCCAAATGCTTTCTAAAGCTTCAACCACTGCCATGTCCGCTTTTTTTCCTTGTTCCAGGGTACCTTGCCTGAGTGACAATTATGCATACCTTTTACATGATATTGATACGGGCACAGTTGGAGTTGTTGATCCTTCTGAAGCTACGCCTGTCATAGATGCATTGAGCAAGAAAAATCGGAACTTGAATTACATACTCAACACTCACCATCATCATGATCACACTGGTGGAAATGTAGAATTAAAAGCAAGATATGGGGCAAAGGTATGA
Protein sequence

>MsG0280011121.01.T01

MVDKVADDGVEPKPAKKEGSGESSGDVKPSFNFKPFKVQIPIQARIGKIQEPNPVPTGVICEARDTASFFTTNARWREREELLTWVRGQGVKAGFGVCIVKSVIKRSYLTMQCERSGEGCPLPPSCKEWMNNKIGEAENWHFAFLDRQNAFNELMSKEPKPPKKPTNEHNPIVCGDTPTPQKKEQEFEWTEDMEEDGNLGISLDLLDRRKKKANFIFNQTVKYGNPFLPLFPSFQMLSKASTTAMSAFFPCSRVPCLSDNYAYLLHDIDTGTVGVVDPSEATPVIDALSKKNRNLNYILNTHHHHDHTGGNVELKARYGAKV*