AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047213.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047213.01.T01 MTR_4g123070 77.049 183 10 1 115 265 211 393 5.38e-90 275
MsG0880047213.01.T01 MTR_4g123070 85.714 126 6 1 1 114 1 126 1.11e-58 194
MsG0880047213.01.T01 MTR_2g034580 29.688 192 92 4 116 265 256 446 1.33e-17 82.4
MsG0880047213.01.T01 MTR_2g034580 29.688 192 92 4 116 265 256 446 1.36e-17 82.4
MsG0880047213.01.T01 MTR_4g121880 30.208 192 91 5 116 265 253 443 6.58e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047213.01.T01 AT3G17240 71.038 183 21 2 115 265 216 398 9.02e-81 252
MsG0880047213.01.T01 AT3G17240 65.909 132 26 4 1 114 1 131 3.87e-38 140
MsG0880047213.01.T01 AT3G17240 71.038 183 21 2 115 265 216 398 9.02e-81 252
MsG0880047213.01.T01 AT3G17240 65.909 132 26 4 1 114 1 131 3.87e-38 140
MsG0880047213.01.T01 AT1G48030 70.492 183 22 2 115 265 216 398 2.50e-80 251
MsG0880047213.01.T01 AT1G48030 67.424 132 24 4 1 114 1 131 4.50e-40 145
MsG0880047213.01.T01 AT1G48030 70.492 183 22 2 115 265 216 398 2.50e-80 251
MsG0880047213.01.T01 AT1G48030 67.424 132 24 4 1 114 1 131 4.50e-40 145
MsG0880047213.01.T01 AT1G48030 70.492 183 22 2 115 265 216 398 2.50e-80 251
MsG0880047213.01.T01 AT1G48030 67.424 132 24 4 1 114 1 131 4.50e-40 145
MsG0880047213.01.T01 AT1G48030 70.492 183 22 2 115 265 216 398 2.50e-80 251
MsG0880047213.01.T01 AT1G48030 67.424 132 24 4 1 114 1 131 4.50e-40 145
MsG0880047213.01.T01 AT1G48030 70.492 183 22 2 115 265 216 398 2.50e-80 251
MsG0880047213.01.T01 AT1G48030 67.424 132 24 4 1 114 1 131 4.50e-40 145
MsG0880047213.01.T01 AT3G17240 71.951 82 16 3 1 76 1 81 8.80e-23 90.9
MsG0880047213.01.T01 AT4G16155 30.208 192 91 4 116 265 254 444 7.86e-18 83.2
MsG0880047213.01.T01 AT3G16950 30.729 192 90 5 116 265 257 447 1.35e-17 82.4
MsG0880047213.01.T01 AT3G16950 30.729 192 90 5 116 265 257 447 1.42e-17 82.4

Find 89 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCACTTCTGGACTTAATT+TGG 0.142487 8:-83360119 MsG0880047213.01.T01:CDS
CCCCAGAAGCTTGTAGTTAT+TGG 0.185023 8:-83360425 MsG0880047213.01.T01:intron
CCCAGAAGCTTGTAGTTATT+GGG 0.254592 8:-83360424 MsG0880047213.01.T01:intron
TGACAAGGTAGGACGCATTT+TGG 0.289967 8:-83360077 MsG0880047213.01.T01:CDS
ACCAAGCTGAGCAGCTTTAA+TGG 0.289980 8:+83361998 None:intergenic
GGTAGGACTCCATTCACTTC+TGG 0.310454 8:-83360130 MsG0880047213.01.T01:CDS
GACAACATCTGCTTCAATTA+TGG 0.320224 8:+83360165 None:intergenic
AGGTCAAGAGGTTTCGCTTC+CGG 0.337458 8:-83362077 MsG0880047213.01.T01:CDS
GCAATTGGTGATGTAATTCC+CGG 0.389033 8:-83360016 MsG0880047213.01.T01:CDS
TCTGCCTTGTGTGCCAGCAT+TGG 0.391864 8:+83359992 None:intergenic
GGCTAGAGATGGGCTCTGTA+TGG 0.404513 8:-83360388 MsG0880047213.01.T01:CDS
GGCTCTGTATGGGGACGAAT+TGG 0.414655 8:-83360377 MsG0880047213.01.T01:CDS
TCCGTTACACTTTCTCTCTA+AGG 0.422319 8:-83362097 MsG0880047213.01.T01:CDS
GGACTTAATTTGGACAAGAT+AGG 0.423938 8:-83360109 MsG0880047213.01.T01:CDS
GCTAGAGATGGGCTCTGTAT+GGG 0.427257 8:-83360387 MsG0880047213.01.T01:CDS
GTCATCATCGGTGGTGGTCC+CGG 0.435774 8:-83362035 MsG0880047213.01.T01:CDS
TGTTGAGTACTTAGCTGGTA+AGG 0.436084 8:-83359951 MsG0880047213.01.T01:CDS
GCCATTAAAGCTGCTCAGCT+TGG 0.436823 8:-83361999 MsG0880047213.01.T01:CDS
GTTATTGGGGCAGGTTACAT+TGG 0.436835 8:-83360410 MsG0880047213.01.T01:CDS
AACGATGGCTATGGCGAACT+TGG 0.445916 8:-83362162 None:intergenic
GAGAACGCTGAAACTGCTTC+CGG 0.449447 8:+83360294 None:intergenic
AACATTCATTTGCCAACCAT+GGG 0.450908 8:-83360750 MsG0880047213.01.T01:CDS
CTTCCGGATTTCTCCATCCA+TGG 0.451603 8:+83360310 None:intergenic
AGTACTTAGCTGGTAAGGTT+GGG 0.465511 8:-83359946 MsG0880047213.01.T01:CDS
GCTTGTGTTGAGTACTTAGC+TGG 0.469925 8:-83359956 MsG0880047213.01.T01:CDS
TTATTGGGGCAGGTTACATT+GGG 0.471150 8:-83360409 MsG0880047213.01.T01:CDS
TTCCCTACAGAAGCAACCTC+GGG 0.473270 8:+83359882 None:intergenic
CAAATGAATGTTTAGCCTCA+TGG 0.478496 8:+83360761 None:intergenic
TGTAATTCCCGGTCCAATGC+TGG 0.480121 8:-83360005 MsG0880047213.01.T01:CDS
AGGTTACATTGGGCTAGAGA+TGG 0.486720 8:-83360399 MsG0880047213.01.T01:CDS
GAGTACTTAGCTGGTAAGGT+TGG 0.487434 8:-83359947 MsG0880047213.01.T01:CDS
CGGTCCAATGCTGGCACACA+AGG 0.492651 8:-83359996 MsG0880047213.01.T01:CDS
CATAGACACCGAGACATTTG+TGG 0.494467 8:+83360038 None:intergenic
GGCGAACTTGGCTCGTAGGA+AGG 0.497240 8:-83362150 MsG0880047213.01.T01:CDS
ATCGAAAAGCGTGGTGCTCT+TGG 0.503316 8:-83361960 MsG0880047213.01.T01:CDS
CTTGTGTGCCAGCATTGGAC+CGG 0.506138 8:+83359997 None:intergenic
ACCCCGAGGTTGCTTCTGTA+GGG 0.507942 8:-83359884 None:intergenic
GGGTTCCGCTCTTCTTTCAT+CGG 0.511274 8:-83362129 MsG0880047213.01.T01:CDS
GATGTTGTCCTTGTATCTGC+TGG 0.512028 8:-83360151 MsG0880047213.01.T01:CDS
CGGATTTCTCCATCCATGGA+TGG 0.518110 8:+83360314 None:intergenic
GAAAACGACGTCGTCATCAT+CGG 0.520382 8:-83362047 MsG0880047213.01.T01:CDS
CTAGAGATGGGCTCTGTATG+GGG 0.523383 8:-83360386 MsG0880047213.01.T01:CDS
CATCCATGGATGGAGAAATC+CGG 0.523667 8:-83360313 MsG0880047213.01.T01:CDS
GCACACAAGGCAGAAGAAGA+TGG 0.528923 8:-83359983 MsG0880047213.01.T01:CDS
ATAGACACCGAGACATTTGT+GGG 0.530811 8:+83360039 None:intergenic
TGTCTCGGTGTCTATGCAAT+TGG 0.533007 8:-83360031 MsG0880047213.01.T01:CDS
CATTTGAAACTTTGACCCCA+TGG 0.533125 8:+83360734 None:intergenic
GAAAAGCGTGGTGCTCTTGG+TGG 0.534842 8:-83361957 MsG0880047213.01.T01:intron
TGAAACTTTGACCCCATGGT+TGG 0.535838 8:+83360738 None:intergenic
ATCGCAGATTGTTCCATCCA+TGG 0.542630 8:-83360327 MsG0880047213.01.T01:CDS
AGCTGGTAAGGTTGGGCATG+TGG 0.543166 8:-83359939 MsG0880047213.01.T01:CDS
AAGCTTGTAGTTATTGGGGC+AGG 0.545180 8:-83360419 MsG0880047213.01.T01:CDS
CTTCCCTACAGAAGCAACCT+CGG 0.546875 8:+83359881 None:intergenic
GGTTACATTGGGCTAGAGAT+GGG 0.547643 8:-83360398 MsG0880047213.01.T01:CDS
AAACATTCATTTGCCAACCA+TGG 0.549901 8:-83360751 MsG0880047213.01.T01:CDS
AATGGCGGCGACGTAACCGC+CGG 0.551240 8:+83362016 None:intergenic
CTATGGCGAACTTGGCTCGT+AGG 0.555334 8:-83362154 MsG0880047213.01.T01:CDS
GAGTCCTACCAGCAGATACA+AGG 0.558562 8:+83360143 None:intergenic
GCGAACTTGGCTCGTAGGAA+GGG 0.560636 8:-83362149 MsG0880047213.01.T01:CDS
TTGTCCTTGTATCTGCTGGT+AGG 0.563808 8:-83360147 MsG0880047213.01.T01:CDS
GATTGACTTAGCTGCCATGA+TGG 0.564118 8:-83360707 MsG0880047213.01.T01:CDS
ATGGCGGCGACGTAACCGCC+GGG 0.564412 8:+83362017 None:intergenic
AACCCCGAGGTTGCTTCTGT+AGG 0.567406 8:-83359885 None:intergenic
AAGAATCTTAACGATGGCTA+TGG 0.567804 8:-83362171 None:intergenic
AAATTAAGTCCAGAAGTGAA+TGG 0.568714 8:+83360121 None:intergenic
ACTTTCTCTCTAAGGTCAAG+AGG 0.569811 8:-83362089 MsG0880047213.01.T01:CDS
CCAGAAGCTTGTAGTTATTG+GGG 0.570780 8:-83360423 MsG0880047213.01.T01:intron
CAGATTGTTCCATCCATGGA+TGG 0.574676 8:-83360323 MsG0880047213.01.T01:CDS
GACGTCGTCATCATCGGTGG+TGG 0.579886 8:-83362041 MsG0880047213.01.T01:CDS
TTGTGTGCCAGCATTGGACC+GGG 0.585669 8:+83359998 None:intergenic
GTTTAGCCTCATGGTACATG+TGG 0.591170 8:+83360770 None:intergenic
TTCCGCTCTTCTTTCATCGG+CGG 0.602872 8:-83362126 MsG0880047213.01.T01:CDS
GTGGACTATGACAAAGTACC+AGG 0.603832 8:-83359920 MsG0880047213.01.T01:CDS
ATGGGGACGAATTGGCTCTG+AGG 0.627284 8:-83360369 MsG0880047213.01.T01:CDS
ACCTTAGAGAGAAAGTGTAA+CGG 0.630266 8:+83362096 None:intergenic
GGAGTTGAAACTGACAAGGT+AGG 0.637183 8:-83360088 MsG0880047213.01.T01:CDS
TGGGGTCAAAGTTTCAAATG+TGG 0.638191 8:-83360731 MsG0880047213.01.T01:CDS
AACGACGTCGTCATCATCGG+TGG 0.658246 8:-83362044 MsG0880047213.01.T01:CDS
GGGGTTGTATAGACAACACC+TGG 0.658278 8:+83359902 None:intergenic
ACCACTTGCATCGAAAAGCG+TGG 0.672031 8:-83361969 MsG0880047213.01.T01:CDS
CTCCGCCGATGAAAGAAGAG+CGG 0.675152 8:+83362124 None:intergenic
AAGCTGAGCAGCTTTAATGG+CGG 0.697561 8:+83362001 None:intergenic
ACTGTTGAACCAGCAGCTGG+TGG 0.697745 8:-83360196 MsG0880047213.01.T01:intron
ACATTCATTTGCCAACCATG+GGG 0.697828 8:-83360749 MsG0880047213.01.T01:CDS
GATAGGAGTTGAAACTGACA+AGG 0.698372 8:-83360092 MsG0880047213.01.T01:CDS
ATCATCGGTGGTGGTCCCGG+CGG 0.698397 8:-83362032 MsG0880047213.01.T01:CDS
TCCCTACAGAAGCAACCTCG+GGG 0.706980 8:+83359883 None:intergenic
ATTCTTCCACATGTACCATG+AGG 0.717958 8:-83360776 MsG0880047213.01.T01:CDS
GTGTTGTCTATACAACCCCG+AGG 0.766074 8:-83359898 MsG0880047213.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACTATTAAAATAATACA+TGG + Chr8:83361211-83361230 None:intergenic 10.0%
!! TTACTATTAAAATAATACAT+GGG + Chr8:83361210-83361229 None:intergenic 10.0%
!! AAATTGTATGTTAAATGATA+TGG - Chr8:83361088-83361107 MsG0880047213.01.T01:intron 15.0%
!! AAGCATATTATTTAAATCAT+TGG - Chr8:83361018-83361037 MsG0880047213.01.T01:intron 15.0%
!! ATATCATTTAACATACAATT+TGG + Chr8:83361089-83361108 None:intergenic 15.0%
!! CTAAAACAAAAGATAAAATA+AGG - Chr8:83360519-83360538 MsG0880047213.01.T01:intron 15.0%
!!! TTTTTAATTGATTAAGTTGA+AGG - Chr8:83360243-83360262 MsG0880047213.01.T01:intron 15.0%
!!! TTTTTGTTATTTTCGATTTT+TGG - Chr8:83360274-83360293 MsG0880047213.01.T01:intron 15.0%
!! AATTAAAAAATACTTGACAC+AGG + Chr8:83360918-83360937 None:intergenic 20.0%
!! CTATATGAGAAAAAATGAAT+AGG + Chr8:83360177-83360196 None:intergenic 20.0%
!!! TTACCTTGTTTTTCTTAAAT+AGG + Chr8:83361407-83361426 None:intergenic 20.0%
! AAGAAAATTGTATCATCAAC+AGG - Chr8:83361575-83361594 MsG0880047213.01.T01:intron 25.0%
! ACATTCAATTCGTTAATCAA+CGG + Chr8:83360989-83361008 None:intergenic 25.0%
! AGAAAATTGTATCATCAACA+GGG - Chr8:83361576-83361595 MsG0880047213.01.T01:intron 25.0%
! ATCCAGCTAAATCTAATAAT+CGG + Chr8:83360748-83360767 None:intergenic 25.0%
! ATTATTAGATTTAGCTGGAT+GGG - Chr8:83360748-83360767 MsG0880047213.01.T01:CDS 25.0%
! TGAGAGTAAACATATTGTTA+TGG - Chr8:83360962-83360981 MsG0880047213.01.T01:intron 25.0%
!! TGTTTATATTTCTGTGTCTT+TGG - Chr8:83360358-83360377 MsG0880047213.01.T01:CDS 25.0%
!! TTTTCTCATATAGATAGATG+TGG - Chr8:83360184-83360203 MsG0880047213.01.T01:CDS 25.0%
AAATTAAGTCCAGAAGTGAA+TGG + Chr8:83361926-83361945 None:intergenic 30.0%
AACAAGGTAACATATGTCAA+AGG - Chr8:83361417-83361436 MsG0880047213.01.T01:intron 30.0%
AACCGATTATTAGATTTAGC+TGG - Chr8:83360743-83360762 MsG0880047213.01.T01:CDS 30.0%
AATAAGCTGAAAACAGCTTA+TGG - Chr8:83360604-83360623 MsG0880047213.01.T01:intron 30.0%
AATATGTTTACTCTCACATC+TGG + Chr8:83360958-83360977 None:intergenic 30.0%
AGGCCTATTTAAGAAAAACA+AGG - Chr8:83361401-83361420 MsG0880047213.01.T01:intron 30.0%
AGTAGAAAAGTGAATCGAAA+TGG + Chr8:83360150-83360169 None:intergenic 30.0%
ATATGTTTACTCTCACATCT+GGG + Chr8:83360957-83360976 None:intergenic 30.0%
ATGAATAGCGCTTATGTATA+AGG - Chr8:83360491-83360510 MsG0880047213.01.T01:intron 30.0%
ATTAAGCTGTTTATCCAAAC+AGG + Chr8:83360454-83360473 None:intergenic 30.0%
ATTCACTTCTGGACTTAATT+TGG - Chr8:83361925-83361944 MsG0880047213.01.T01:intron 30.0%
CTAAACTTGTATTAACCTCT+TGG - Chr8:83360889-83360908 MsG0880047213.01.T01:intron 30.0%
GAAAATTGTATCATCAACAG+GGG - Chr8:83361577-83361596 MsG0880047213.01.T01:intron 30.0%
GATTATTAGATTTAGCTGGA+TGG - Chr8:83360747-83360766 MsG0880047213.01.T01:CDS 30.0%
GTAACATATGTCAAAGGATA+CGG - Chr8:83361423-83361442 MsG0880047213.01.T01:intron 30.0%
GTATGTTAAATGATATGGTC+TGG - Chr8:83361093-83361112 MsG0880047213.01.T01:intron 30.0%
TTAAGCTGTTTATCCAAACA+GGG + Chr8:83360453-83360472 None:intergenic 30.0%
! AACAGTATTTTCACCTTCAA+CGG + Chr8:83361483-83361502 None:intergenic 30.0%
! ACTCTTGATTTTCTCACTTT+AGG - Chr8:83361059-83361078 MsG0880047213.01.T01:intron 30.0%
! CTCTTGATTTTCTCACTTTA+GGG - Chr8:83361060-83361079 MsG0880047213.01.T01:intron 30.0%
! TAAATGATATGGTCTGGAAT+TGG - Chr8:83361099-83361118 MsG0880047213.01.T01:intron 30.0%
! TAACTTTTCGTAGAGTCATT+TGG - Chr8:83360827-83360846 MsG0880047213.01.T01:intron 30.0%
! TAGAGATTTTACATCTGAAC+CGG + Chr8:83361534-83361553 None:intergenic 30.0%
! TCTTGATTTTCTCACTTTAG+GGG - Chr8:83361061-83361080 MsG0880047213.01.T01:intron 30.0%
!! CTTTGATTTTGGATGAACAT+CGG - Chr8:83360334-83360353 MsG0880047213.01.T01:CDS 30.0%
!!! TCTCTTTTTAAAGTCTACTC+TGG - Chr8:83360860-83360879 MsG0880047213.01.T01:intron 30.0%
AAAACCATATTCCACTAGGT+GGG + Chr8:83361167-83361186 None:intergenic 35.0%
AAACATTCATTTGCCAACCA+TGG - Chr8:83361293-83361312 MsG0880047213.01.T01:intron 35.0%
AACATTCATTTGCCAACCAT+GGG - Chr8:83361294-83361313 MsG0880047213.01.T01:intron 35.0%
AACCAAAACCATATTCCACT+AGG + Chr8:83361171-83361190 None:intergenic 35.0%
AAGCATATCATTATAGCCAC+CGG - Chr8:83361512-83361531 MsG0880047213.01.T01:intron 35.0%
CAAATGAATGTTTAGCCTCA+TGG + Chr8:83361286-83361305 None:intergenic 35.0%
GAAATTCAAGCTGAATACCA+AGG - Chr8:83361788-83361807 MsG0880047213.01.T01:intron 35.0%
GACAACATCTGCTTCAATTA+TGG + Chr8:83361882-83361901 None:intergenic 35.0%
GGTGAAAATACTGTTGTGAA+AGG - Chr8:83361488-83361507 MsG0880047213.01.T01:intron 35.0%
TCAGATGTAAAATCTCTACC+TGG - Chr8:83361536-83361555 MsG0880047213.01.T01:intron 35.0%
TCTTGATTTAATGCCCTGTT+TGG - Chr8:83360437-83360456 MsG0880047213.01.T01:intron 35.0%
TTAAATAGGCCTTCAATACC+CGG + Chr8:83361393-83361412 None:intergenic 35.0%
TTGTGTTGCCTTCATATTTC+AGG - Chr8:83361236-83361255 MsG0880047213.01.T01:intron 35.0%
! ACCTTAGAGAGAAAGTGTAA+CGG + Chr8:83359951-83359970 None:intergenic 35.0%
! GGACTTAATTTGGACAAGAT+AGG - Chr8:83361935-83361954 MsG0880047213.01.T01:intron 35.0%
!! GACGCATTTTGGTAAATGAA+AGG - Chr8:83361978-83361997 MsG0880047213.01.T01:CDS 35.0%
!!! CAAGTTAGTTTTTTCTGCTG+AGG - Chr8:83360302-83360321 MsG0880047213.01.T01:CDS 35.0%
AAAACACTTGCGAGACTGTT+TGG + Chr8:83360660-83360679 None:intergenic 40.0%
AAACACTTGCGAGACTGTTT+GGG + Chr8:83360659-83360678 None:intergenic 40.0%
AAACCATATTCCACTAGGTG+GGG + Chr8:83361166-83361185 None:intergenic 40.0%
AAAGCTGTTCTAATCTGACC+CGG - Chr8:83361371-83361390 MsG0880047213.01.T01:intron 40.0%
AATCGAAATGGAACCTTGGA+AGG + Chr8:83360138-83360157 None:intergenic 40.0%
ACATTCATTTGCCAACCATG+GGG - Chr8:83361295-83361314 MsG0880047213.01.T01:intron 40.0%
AGTACTTAGCTGGTAAGGTT+GGG - Chr8:83362098-83362117 MsG0880047213.01.T01:CDS 40.0%
AGTGAATCGAAATGGAACCT+TGG + Chr8:83360142-83360161 None:intergenic 40.0%
ATAGACACCGAGACATTTGT+GGG + Chr8:83362008-83362027 None:intergenic 40.0%
ATCGAAATGGAACCTTGGAA+GGG + Chr8:83360137-83360156 None:intergenic 40.0%
ATTCAAGCTGAATACCAAGG+TGG - Chr8:83361791-83361810 MsG0880047213.01.T01:intron 40.0%
ATTCTTCCACATGTACCATG+AGG - Chr8:83361268-83361287 MsG0880047213.01.T01:intron 40.0%
CAAAACCATATTCCACTAGG+TGG + Chr8:83361168-83361187 None:intergenic 40.0%
CCAATAACTACAAGCTTCTG+GGG + Chr8:83361622-83361641 None:intergenic 40.0%
CCAGAAGCTTGTAGTTATTG+GGG - Chr8:83361621-83361640 MsG0880047213.01.T01:intron 40.0%
CCCAATAACTACAAGCTTCT+GGG + Chr8:83361623-83361642 None:intergenic 40.0%
CCCAGAAGCTTGTAGTTATT+GGG - Chr8:83361620-83361639 MsG0880047213.01.T01:intron 40.0%
GAAAATTCCTTCACCATCTG+AGG - Chr8:83361445-83361464 MsG0880047213.01.T01:intron 40.0%
GATAGGAGTTGAAACTGACA+AGG - Chr8:83361952-83361971 MsG0880047213.01.T01:intron 40.0%
TAAATAGGCCTTCAATACCC+GGG + Chr8:83361392-83361411 None:intergenic 40.0%
TCCGTTACACTTTCTCTCTA+AGG - Chr8:83359947-83359966 MsG0880047213.01.T01:CDS 40.0%
TGGGGTCAAAGTTTCAAATG+TGG - Chr8:83361313-83361332 MsG0880047213.01.T01:intron 40.0%
TGTTGAGTACTTAGCTGGTA+AGG - Chr8:83362093-83362112 MsG0880047213.01.T01:CDS 40.0%
TTATTGGGGCAGGTTACATT+GGG - Chr8:83361635-83361654 MsG0880047213.01.T01:intron 40.0%
! AGATTTTACATCTGAACCGG+TGG + Chr8:83361531-83361550 None:intergenic 40.0%
! AGGTTTTCCCACAAATGTCT+CGG - Chr8:83361998-83362017 MsG0880047213.01.T01:CDS 40.0%
! CACCTAGTGGAATATGGTTT+TGG - Chr8:83361166-83361185 MsG0880047213.01.T01:intron 40.0%
! CATTTGAAACTTTGACCCCA+TGG + Chr8:83361313-83361332 None:intergenic 40.0%
! TTTGTCTTTTTGCGCCATCA+TGG + Chr8:83361354-83361373 None:intergenic 40.0%
! TTTTCATCAATAGTGACGCC+AGG + Chr8:83361557-83361576 None:intergenic 40.0%
!! ACTTTCTCTCTAAGGTCAAG+AGG - Chr8:83359955-83359974 MsG0880047213.01.T01:CDS 40.0%
!! CAAAAGCGCCTGAAATATGA+AGG + Chr8:83361247-83361266 None:intergenic 40.0%
!! GCAATTGGTGATGTAATTCC+CGG - Chr8:83362028-83362047 MsG0880047213.01.T01:CDS 40.0%
!! TGGTTGGAGTTGATACTTCT+GGG - Chr8:83361811-83361830 MsG0880047213.01.T01:intron 40.0%
!!! GGTGGAGAGTACTTTGATTT+TGG - Chr8:83360323-83360342 MsG0880047213.01.T01:CDS 40.0%
!!! GTTAGTTTTTTCTGCTGAGG+TGG - Chr8:83360305-83360324 MsG0880047213.01.T01:CDS 40.0%
AAGCTGAATACCAAGGTGGT+TGG - Chr8:83361795-83361814 MsG0880047213.01.T01:intron 45.0%
AAGCTGTCGTGGAGAACTTA+TGG - Chr8:83360580-83360599 MsG0880047213.01.T01:intron 45.0%
AAGCTGTTCTAATCTGACCC+GGG - Chr8:83361372-83361391 MsG0880047213.01.T01:intron 45.0%
AAGCTTGTAGTTATTGGGGC+AGG - Chr8:83361625-83361644 MsG0880047213.01.T01:intron 45.0%
ACTTGACACAGGAAACCAAG+AGG + Chr8:83360907-83360926 None:intergenic 45.0%
AGACAAGCGCTTAGACATGA+AGG + Chr8:83360722-83360741 None:intergenic 45.0%
AGTATCAACTCCAACCACCT+TGG + Chr8:83361808-83361827 None:intergenic 45.0%
ATCGCAGATTGTTCCATCCA+TGG - Chr8:83361717-83361736 MsG0880047213.01.T01:intron 45.0%
CAGATTGTTCCATCCATGGA+TGG - Chr8:83361721-83361740 MsG0880047213.01.T01:intron 45.0%
CATAGACACCGAGACATTTG+TGG + Chr8:83362009-83362028 None:intergenic 45.0%
CATCCATGGATGGAGAAATC+CGG - Chr8:83361731-83361750 MsG0880047213.01.T01:intron 45.0%
CCCCAATAACTACAAGCTTC+TGG + Chr8:83361624-83361643 None:intergenic 45.0%
CCCCAGAAGCTTGTAGTTAT+TGG - Chr8:83361619-83361638 MsG0880047213.01.T01:intron 45.0%
GAAAACGACGTCGTCATCAT+CGG - Chr8:83359997-83360016 MsG0880047213.01.T01:CDS 45.0%
GACAAGCGCTTAGACATGAA+GGG + Chr8:83360721-83360740 None:intergenic 45.0%
GAGTACTTAGCTGGTAAGGT+TGG - Chr8:83362097-83362116 MsG0880047213.01.T01:CDS 45.0%
GATGTTGTCCTTGTATCTGC+TGG - Chr8:83361893-83361912 MsG0880047213.01.T01:intron 45.0%
GCTTGTGTTGAGTACTTAGC+TGG - Chr8:83362088-83362107 MsG0880047213.01.T01:CDS 45.0%
GGAGTTGAAACTGACAAGGT+AGG - Chr8:83361956-83361975 MsG0880047213.01.T01:intron 45.0%
GTTATTGGGGCAGGTTACAT+TGG - Chr8:83361634-83361653 MsG0880047213.01.T01:intron 45.0%
GTTTAGCCTCATGGTACATG+TGG + Chr8:83361277-83361296 None:intergenic 45.0%
TCAGCGTTCTCTTGAAAGCA+AGG - Chr8:83361762-83361781 MsG0880047213.01.T01:intron 45.0%
TGAAACTTTGACCCCATGGT+TGG + Chr8:83361309-83361328 None:intergenic 45.0%
TTGTCCTTGTATCTGCTGGT+AGG - Chr8:83361897-83361916 MsG0880047213.01.T01:intron 45.0%
! AAGCTGAGCAGCTTTAATGG+CGG + Chr8:83360046-83360065 None:intergenic 45.0%
! ACCAAGCTGAGCAGCTTTAA+TGG + Chr8:83360049-83360068 None:intergenic 45.0%
! AGGTTACATTGGGCTAGAGA+TGG - Chr8:83361645-83361664 MsG0880047213.01.T01:intron 45.0%
! GATTGACTTAGCTGCCATGA+TGG - Chr8:83361337-83361356 MsG0880047213.01.T01:intron 45.0%
! GGTTACATTGGGCTAGAGAT+GGG - Chr8:83361646-83361665 MsG0880047213.01.T01:intron 45.0%
! GTGGACTATGACAAAGTACC+AGG - Chr8:83362124-83362143 MsG0880047213.01.T01:CDS 45.0%
! TGACAAGGTAGGACGCATTT+TGG - Chr8:83361967-83361986 MsG0880047213.01.T01:CDS 45.0%
!! GACGTCGTTTTCATCAGATC+CGG + Chr8:83359989-83360008 None:intergenic 45.0%
!! GCTGTTTTCTTAAGCTGTCG+TGG - Chr8:83360569-83360588 MsG0880047213.01.T01:intron 45.0%
!! GTGGTTGGAGTTGATACTTC+TGG - Chr8:83361810-83361829 MsG0880047213.01.T01:intron 45.0%
!! TAATCTGACCCGGGTATTGA+AGG - Chr8:83361381-83361400 MsG0880047213.01.T01:intron 45.0%
!! TGGAGTTGATACTTCTGGGA+TGG - Chr8:83361815-83361834 MsG0880047213.01.T01:intron 45.0%
!! TGTCTCGGTGTCTATGCAAT+TGG - Chr8:83362013-83362032 MsG0880047213.01.T01:CDS 45.0%
ACAGAGACCTCAGATGGTGA+AGG + Chr8:83361455-83361474 None:intergenic 50.0%
ACCACTTGCATCGAAAAGCG+TGG - Chr8:83360075-83360094 MsG0880047213.01.T01:CDS 50.0%
AGGTCAAGAGGTTTCGCTTC+CGG - Chr8:83359967-83359986 MsG0880047213.01.T01:CDS 50.0%
CACTAGGTGGGGTGACTATA+TGG + Chr8:83361155-83361174 None:intergenic 50.0%
CATATAGTCACCCCACCTAG+TGG - Chr8:83361153-83361172 MsG0880047213.01.T01:intron 50.0%
CGGATTTCTCCATCCATGGA+TGG + Chr8:83361733-83361752 None:intergenic 50.0%
CTAACTGTTGAACCAGCAGC+TGG - Chr8:83361845-83361864 MsG0880047213.01.T01:intron 50.0%
CTTCCGGATTTCTCCATCCA+TGG + Chr8:83361737-83361756 None:intergenic 50.0%
GAGAACGCTGAAACTGCTTC+CGG + Chr8:83361753-83361772 None:intergenic 50.0%
GAGTCCTACCAGCAGATACA+AGG + Chr8:83361904-83361923 None:intergenic 50.0%
GATGCAACCAACGTTGAGAC+AGG + Chr8:83360115-83360134 None:intergenic 50.0%
GCACACAAGGCAGAAGAAGA+TGG - Chr8:83362061-83362080 MsG0880047213.01.T01:CDS 50.0%
GCCATTAAAGCTGCTCAGCT+TGG - Chr8:83360045-83360064 MsG0880047213.01.T01:CDS 50.0%
GGGGTTGTATAGACAACACC+TGG + Chr8:83362145-83362164 None:intergenic 50.0%
GGGTTCCGCTCTTCTTTCAT+CGG - Chr8:83359915-83359934 MsG0880047213.01.T01:CDS 50.0%
GGTAGGACTCCATTCACTTC+TGG - Chr8:83361914-83361933 MsG0880047213.01.T01:intron 50.0%
GTCTCTGTAGACACCGTTGA+AGG - Chr8:83361467-83361486 MsG0880047213.01.T01:intron 50.0%
GTGTCTACAGAGACCTCAGA+TGG + Chr8:83361461-83361480 None:intergenic 50.0%
GTGTTGTCTATACAACCCCG+AGG - Chr8:83362146-83362165 MsG0880047213.01.T01:CDS 50.0%
TCACCCCACCTAGTGGAATA+TGG - Chr8:83361160-83361179 MsG0880047213.01.T01:intron 50.0%
TGTAATTCCCGGTCCAATGC+TGG - Chr8:83362039-83362058 MsG0880047213.01.T01:CDS 50.0%
TTCCGCTCTTCTTTCATCGG+CGG - Chr8:83359918-83359937 MsG0880047213.01.T01:CDS 50.0%
! ACCACGCTTTTCGATGCAAG+TGG + Chr8:83360079-83360098 None:intergenic 50.0%
! ATCGAAAAGCGTGGTGCTCT+TGG - Chr8:83360084-83360103 MsG0880047213.01.T01:CDS 50.0%
! CTAGAGATGGGCTCTGTATG+GGG - Chr8:83361658-83361677 MsG0880047213.01.T01:intron 50.0%
! GCTAGAGATGGGCTCTGTAT+GGG - Chr8:83361657-83361676 MsG0880047213.01.T01:intron 50.0%
AACGACGTCGTCATCATCGG+TGG - Chr8:83360000-83360019 MsG0880047213.01.T01:CDS 55.0%
ACTGTTGAACCAGCAGCTGG+TGG - Chr8:83361848-83361867 MsG0880047213.01.T01:intron 55.0%
AGCTGGTAAGGTTGGGCATG+TGG - Chr8:83362105-83362124 MsG0880047213.01.T01:CDS 55.0%
CTCCGCCGATGAAAGAAGAG+CGG + Chr8:83359923-83359942 None:intergenic 55.0%
GGCTCTGTATGGGGACGAAT+TGG - Chr8:83361667-83361686 MsG0880047213.01.T01:intron 55.0%
GGTGGTACCTGTCTCAACGT+TGG - Chr8:83360105-83360124 MsG0880047213.01.T01:CDS 55.0%
TCTGCCTTGTGTGCCAGCAT+TGG + Chr8:83362055-83362074 None:intergenic 55.0%
! CGTTGGTTGCATCCCTTCCA+AGG - Chr8:83360122-83360141 MsG0880047213.01.T01:CDS 55.0%
! CTATGGCGAACTTGGCTCGT+AGG - Chr8:83359890-83359909 MsG0880047213.01.T01:CDS 55.0%
! CTTGTGTGCCAGCATTGGAC+CGG + Chr8:83362050-83362069 None:intergenic 55.0%
! GAAAAGCGTGGTGCTCTTGG+TGG - Chr8:83360087-83360106 MsG0880047213.01.T01:CDS 55.0%
! GCGAACTTGGCTCGTAGGAA+GGG - Chr8:83359895-83359914 MsG0880047213.01.T01:CDS 55.0%
! GGCTAGAGATGGGCTCTGTA+TGG - Chr8:83361656-83361675 MsG0880047213.01.T01:intron 55.0%
! TTGTGTGCCAGCATTGGACC+GGG + Chr8:83362049-83362068 None:intergenic 55.0%
!! ATGGGGACGAATTGGCTCTG+AGG - Chr8:83361675-83361694 MsG0880047213.01.T01:intron 55.0%
CGGTCCAATGCTGGCACACA+AGG - Chr8:83362048-83362067 MsG0880047213.01.T01:CDS 60.0%
GACGTCGTCATCATCGGTGG+TGG - Chr8:83360003-83360022 MsG0880047213.01.T01:CDS 60.0%
GTCTGTTCACCACCAGCTGC+TGG + Chr8:83361860-83361879 None:intergenic 60.0%
! GGCGAACTTGGCTCGTAGGA+AGG - Chr8:83359894-83359913 MsG0880047213.01.T01:CDS 60.0%
! GTCATCATCGGTGGTGGTCC+CGG - Chr8:83360009-83360028 MsG0880047213.01.T01:CDS 60.0%
AATGGCGGCGACGTAACCGC+CGG + Chr8:83360031-83360050 None:intergenic 65.0%
! ATCATCGGTGGTGGTCCCGG+CGG - Chr8:83360012-83360031 MsG0880047213.01.T01:CDS 65.0%
ATGGCGGCGACGTAACCGCC+GGG + Chr8:83360030-83360049 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 83359886 83362180 83359886 ID=MsG0880047213.01;Name=MsG0880047213.01
Chr8 mRNA 83359886 83362180 83359886 ID=MsG0880047213.01.T01;Parent=MsG0880047213.01;Name=MsG0880047213.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|4|0|267
Chr8 exon 83361958 83362180 83361958 ID=MsG0880047213.01.T01:exon:35530;Parent=MsG0880047213.01.T01
Chr8 exon 83360690 83360808 83360690 ID=MsG0880047213.01.T01:exon:35529;Parent=MsG0880047213.01.T01
Chr8 exon 83360300 83360441 83360300 ID=MsG0880047213.01.T01:exon:35528;Parent=MsG0880047213.01.T01
Chr8 exon 83359886 83360205 83359886 ID=MsG0880047213.01.T01:exon:35527;Parent=MsG0880047213.01.T01
Chr8 CDS 83361958 83362180 83361958 ID=MsG0880047213.01.T01:cds;Parent=MsG0880047213.01.T01
Chr8 CDS 83360690 83360808 83360690 ID=MsG0880047213.01.T01:cds;Parent=MsG0880047213.01.T01
Chr8 CDS 83360300 83360441 83360300 ID=MsG0880047213.01.T01:cds;Parent=MsG0880047213.01.T01
Chr8 CDS 83359886 83360205 83359886 ID=MsG0880047213.01.T01:cds;Parent=MsG0880047213.01.T01
Gene Sequence

>MsG0880047213.01.T01

ATGGCTATGGCGAACTTGGCTCGTAGGAAGGGTTCCGCTCTTCTTTCATCGGCGGAGACTCTCCGTTACACTTTCTCTCTAAGGTCAAGAGGTTTCGCTTCCGGATCTGATGAAAACGACGTCGTCATCATCGGTGGTGGTCCCGGCGGTTACGTCGCCGCCATTAAAGCTGCTCAGCTTGGTTTCAAAACCACTTGCATCGAAAAGCGTGGTGCTCTTGGTGGCGCTTTTGCATTCTTCCACATGTACCATGAGGCTAAACATTCATTTGCCAACCATGGGGTCAAAGTTTCAAATGTGGAGATTGACTTAGCTGCCATGATGGCGCAAAAAGACAAAGCTAAGCTTGTAGTTATTGGGGCAGGTTACATTGGGCTAGAGATGGGCTCTGTATGGGGACGAATTGGCTCTGAGGTAACTGTTTTTGAGTTTGCATCGCAGATTGTTCCATCCATGGATGGAGAAATCCGGAAGCAGTTTCAGCCAGCTGGTGGTGAACAGACCATAATTGAAGCAGATGTTGTCCTTGTATCTGCTGGTAGGACTCCATTCACTTCTGGACTTAATTTGGACAAGATAGGAGTTGAAACTGACAAGGTAGGACGCATTTTGGTAAATGAAAGGTTTTCCCACAAATGTCTCGGTGTCTATGCAATTGGTGATGTAATTCCCGGTCCAATGCTGGCACACAAGGCAGAAGAAGATGGAGTTGCTTGTGTTGAGTACTTAGCTGGTAAGGTTGGGCATGTGGACTATGACAAAGTACCAGGTGTTGTCTATACAACCCCGAGGTTGCTTCTGTAG
Protein sequence

>MsG0880047213.01.T01

MAMANLARRKGSALLSSAETLRYTFSLRSRGFASGSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGAFAFFHMYHEAKHSFANHGVKVSNVEIDLAAMMAQKDKAKLVVIGAGYIGLEMGSVWGRIGSEVTVFEFASQIVPSMDGEIRKQFQPAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKVGRILVNERFSHKCLGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTTPRLLL*