Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011369.01.T01 | XP_003597843.1 | 98.857 | 350 | 4 | 0 | 5 | 354 | 24 | 373 | 0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011369.01.T01 | G7IMH9 | 98.857 | 350 | 4 | 0 | 5 | 354 | 24 | 373 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005569.01 | MsG0280011369.01 | 0.800086 | 1.699317e-48 | 7.842286e-46 |
| MsG0280011369.01 | MsG0380011846.01 | 0.821128 | 4.759832e-53 | 3.839262e-50 |
| MsG0280011369.01 | MsG0380012818.01 | 0.831668 | 1.465229e-55 | 1.600950e-52 |
| MsG0280011369.01 | MsG0380017079.01 | 0.847432 | 1.160811e-59 | 2.062940e-56 |
| MsG0280011369.01 | MsG0480021277.01 | 0.848958 | 4.397408e-60 | 8.208073e-57 |
| MsG0280011369.01 | MsG0780040990.01 | 0.801746 | 7.786338e-49 | 3.747400e-46 |
| MsG0280011369.01 | MsG0880043483.01 | 0.842730 | 2.162715e-58 | 3.308870e-55 |
| MsG0280011369.01 | MsG0880046858.01 | 0.805626 | 1.219289e-49 | 6.481910e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380012818.01 | MsG0280011369.01 | PPI |
| MsG0480019818.01 | MsG0280011369.01 | PPI |
| MsG0280011369.01 | MsG0480019817.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011369.01.T01 | MTR_2g103170 | 98.857 | 350 | 4 | 0 | 5 | 354 | 24 | 373 | 0.0 | 715 |
| MsG0280011369.01.T01 | MTR_1g011800 | 68.876 | 347 | 102 | 2 | 5 | 350 | 35 | 376 | 3.78e-180 | 504 |
| MsG0280011369.01.T01 | MTR_0045s0110 | 50.595 | 336 | 160 | 2 | 7 | 342 | 32 | 361 | 3.99e-119 | 349 |
| MsG0280011369.01.T01 | MTR_4g039740 | 50.599 | 334 | 159 | 2 | 9 | 342 | 34 | 361 | 2.77e-115 | 339 |
| MsG0280011369.01.T01 | MTR_4g039720 | 50.000 | 334 | 161 | 2 | 9 | 342 | 38 | 365 | 1.07e-114 | 338 |
| MsG0280011369.01.T01 | MTR_2g019600 | 46.647 | 343 | 178 | 1 | 2 | 344 | 28 | 365 | 2.46e-111 | 330 |
| MsG0280011369.01.T01 | MTR_4g039680 | 47.904 | 334 | 168 | 2 | 9 | 342 | 34 | 361 | 2.49e-110 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011369.01.T01 | AT5G11420 | 67.341 | 346 | 108 | 1 | 5 | 350 | 26 | 366 | 7.15e-179 | 500 |
| MsG0280011369.01.T01 | AT5G25460 | 67.919 | 346 | 106 | 1 | 5 | 350 | 29 | 369 | 6.51e-178 | 498 |
| MsG0280011369.01.T01 | AT4G32460 | 67.630 | 346 | 107 | 1 | 5 | 350 | 25 | 365 | 4.93e-175 | 491 |
| MsG0280011369.01.T01 | AT4G32460 | 67.630 | 346 | 107 | 1 | 5 | 350 | 25 | 365 | 4.93e-175 | 491 |
| MsG0280011369.01.T01 | AT1G80240 | 66.472 | 343 | 110 | 1 | 5 | 347 | 28 | 365 | 1.55e-168 | 474 |
| MsG0280011369.01.T01 | AT4G32460 | 67.273 | 330 | 103 | 1 | 21 | 350 | 1 | 325 | 1.91e-165 | 465 |
| MsG0280011369.01.T01 | AT4G32460 | 67.273 | 330 | 103 | 1 | 21 | 350 | 1 | 325 | 1.91e-165 | 465 |
| MsG0280011369.01.T01 | AT3G08030 | 52.786 | 341 | 156 | 1 | 2 | 342 | 24 | 359 | 9.91e-123 | 358 |
| MsG0280011369.01.T01 | AT2G41800 | 49.709 | 344 | 168 | 1 | 5 | 348 | 32 | 370 | 2.56e-119 | 349 |
| MsG0280011369.01.T01 | AT3G08030 | 53.106 | 322 | 146 | 1 | 21 | 342 | 1 | 317 | 1.17e-116 | 341 |
| MsG0280011369.01.T01 | AT2G41810 | 48.974 | 341 | 169 | 1 | 5 | 345 | 32 | 367 | 1.57e-116 | 342 |
| MsG0280011369.01.T01 | AT2G34510 | 47.647 | 340 | 178 | 0 | 5 | 344 | 39 | 378 | 3.78e-112 | 332 |
| MsG0280011369.01.T01 | AT1G29980 | 44.767 | 344 | 186 | 1 | 5 | 344 | 3 | 346 | 3.51e-108 | 321 |
| MsG0280011369.01.T01 | AT1G29980 | 44.767 | 344 | 186 | 1 | 5 | 344 | 39 | 382 | 1.04e-107 | 321 |
| MsG0280011369.01.T01 | AT2G34510 | 47.945 | 292 | 152 | 0 | 53 | 344 | 1 | 292 | 8.88e-98 | 293 |
| MsG0280011369.01.T01 | AT5G14150 | 32.597 | 362 | 203 | 13 | 2 | 344 | 18 | 357 | 1.05e-41 | 150 |
| MsG0280011369.01.T01 | AT5G14150 | 32.597 | 362 | 203 | 13 | 2 | 344 | 18 | 357 | 1.05e-41 | 150 |
Find 92 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTAGGTTTGATGCTTT+TGG | 0.196530 | 2:-83142300 | None:intergenic |
| TCAAGTTCCTTATCAATCTA+AGG | 0.227907 | 2:+83143654 | MsG0280011369.01.T01:CDS |
| TTGTCACTACTGTGCCCTTT+AGG | 0.246643 | 2:-83142314 | None:intergenic |
| TGGATAACAATTTCCCCTTC+TGG | 0.270997 | 2:-83142669 | None:intergenic |
| AAATTACCTCTGGTTCTTCT+AGG | 0.274083 | 2:-83142765 | None:intergenic |
| TATTGATTCTGTTGCCTTGA+AGG | 0.280632 | 2:+83142731 | MsG0280011369.01.T01:CDS |
| CCCATGATGCCATACCTAAT+TGG | 0.285226 | 2:+83142337 | MsG0280011369.01.T01:CDS |
| ATACCTAATTGGACAGTTTC+AGG | 0.305431 | 2:+83142348 | MsG0280011369.01.T01:CDS |
| CAAAAGGTGAAATTAAATAA+AGG | 0.320615 | 2:+83142474 | MsG0280011369.01.T01:CDS |
| TATCCTGAAACTGTCCAATT+AGG | 0.329626 | 2:-83142351 | None:intergenic |
| AAAACAAGGTGACATGCTTT+TGG | 0.342997 | 2:+83142398 | MsG0280011369.01.T01:CDS |
| ACTTCTGAGAAAAGAGATTA+TGG | 0.344578 | 2:+83142573 | MsG0280011369.01.T01:CDS |
| CAAGAAGTCTTCACCACAAT+TGG | 0.356227 | 2:+83143538 | MsG0280011369.01.T01:CDS |
| AATACTCCCCATGATGCATT+TGG | 0.357606 | 2:-83143361 | None:intergenic |
| ACCAGAGTTATCATTCTTCA+TGG | 0.360617 | 2:-83143761 | None:intergenic |
| CATTACTTAGGTATGCTTGT+AGG | 0.373549 | 2:-83143836 | None:intergenic |
| GATAACTCTGGTTCTCTTTG+TGG | 0.379593 | 2:+83143772 | MsG0280011369.01.T01:CDS |
| GGCAAAGGAGGGTTTGTTAG+AGG | 0.380600 | 2:+83143676 | MsG0280011369.01.T01:CDS |
| TCCAATTAGGTATGGCATCA+TGG | 0.399317 | 2:-83142338 | None:intergenic |
| CATCTTCAACACCAGAGTTA+TGG | 0.410007 | 2:-83142689 | None:intergenic |
| CTAACAGCATAAGCACCTTC+TGG | 0.410744 | 2:-83142426 | None:intergenic |
| AAAAGGTGAAATTAAATAAA+GGG | 0.413489 | 2:+83142475 | MsG0280011369.01.T01:CDS |
| CAGAAGGTGCTTATGCTGTT+AGG | 0.416893 | 2:+83142427 | MsG0280011369.01.T01:CDS |
| GTTGGGAATCATTTGCTTGT+GGG | 0.420479 | 2:+83142631 | MsG0280011369.01.T01:CDS |
| CTACCATACATAGTCTGTAT+TGG | 0.420768 | 2:-83142603 | None:intergenic |
| CGACAAGACGTACTAGGATT+AGG | 0.425557 | 2:+83143719 | MsG0280011369.01.T01:CDS |
| TTTGATTTGCAACATTACTT+AGG | 0.436219 | 2:-83143848 | None:intergenic |
| CTTTCAGGTTTATTGCCAAA+TGG | 0.445556 | 2:+83142261 | MsG0280011369.01.T01:intron |
| TACGTTGAATACATAAAATC+AGG | 0.449032 | 2:+83142372 | MsG0280011369.01.T01:CDS |
| CCAACTTCAAAGTCACCATT+TGG | 0.454460 | 2:-83142276 | None:intergenic |
| TCATGGTGTAAAATGTACTT+AGG | 0.454825 | 2:-83143744 | None:intergenic |
| GATGCATTTGGGAACACATA+TGG | 0.455308 | 2:-83143349 | None:intergenic |
| AGGCTACGACAAGACGTACT+AGG | 0.457315 | 2:+83143713 | MsG0280011369.01.T01:CDS |
| TCAACTATCCATCCTGGTAA+TGG | 0.458492 | 2:-83143415 | None:intergenic |
| ATACTCCCCATGATGCATTT+GGG | 0.460441 | 2:-83143360 | None:intergenic |
| ATGACTGTAGAAGCATTTGC+TGG | 0.463295 | 2:+83143619 | MsG0280011369.01.T01:CDS |
| CCTTTGCCCTTAGATTGATA+AGG | 0.464510 | 2:-83143661 | None:intergenic |
| ATTACTTAGGTATGCTTGTA+GGG | 0.467266 | 2:-83143835 | None:intergenic |
| TACCTCTGGTTCTTCTAGGT+GGG | 0.470065 | 2:-83142761 | None:intergenic |
| AGAGCAATTGAACTTGTAGC+AGG | 0.483311 | 2:+83143496 | MsG0280011369.01.T01:CDS |
| TGAAGCATACATTAAACAAA+AGG | 0.487173 | 2:+83142458 | MsG0280011369.01.T01:CDS |
| CCAAAAGCATCAAACCTAAA+GGG | 0.488419 | 2:+83142300 | MsG0280011369.01.T01:CDS |
| GATGCTCATGGTCCATTACC+AGG | 0.489743 | 2:+83143403 | MsG0280011369.01.T01:CDS |
| TCAATAAGTGGGCCACAAGC+TGG | 0.490288 | 2:-83142714 | None:intergenic |
| CCAAATGGTGACTTTGAAGT+TGG | 0.493192 | 2:+83142276 | MsG0280011369.01.T01:CDS |
| ATGTGTTCCCAAATGCATCA+TGG | 0.495027 | 2:+83143353 | MsG0280011369.01.T01:CDS |
| ATTCCAATACAGACTATGTA+TGG | 0.495208 | 2:+83142600 | MsG0280011369.01.T01:CDS |
| TCCAAAAGCATCAAACCTAA+AGG | 0.497345 | 2:+83142299 | MsG0280011369.01.T01:CDS |
| CCAATTAGGTATGGCATCAT+GGG | 0.500399 | 2:-83142337 | None:intergenic |
| AGGTGGGTTCAAAACCTTCA+AGG | 0.507765 | 2:-83142745 | None:intergenic |
| GGTTGGGAATCATTTGCTTG+TGG | 0.513196 | 2:+83142630 | MsG0280011369.01.T01:CDS |
| TATGTATGGTAGCAATGGTT+GGG | 0.515899 | 2:+83142614 | MsG0280011369.01.T01:CDS |
| TGTGTTCCCAAATGCATCAT+GGG | 0.517111 | 2:+83143354 | MsG0280011369.01.T01:CDS |
| CAAGTTCCTTATCAATCTAA+GGG | 0.522342 | 2:+83143655 | MsG0280011369.01.T01:CDS |
| ATTCTTGTAATAATATAGCT+AGG | 0.537601 | 2:+83143929 | MsG0280011369.01.T01:three_prime_UTR |
| TTACCTCTGGTTCTTCTAGG+TGG | 0.537982 | 2:-83142762 | None:intergenic |
| AGAGATTCAACTATCCATCC+TGG | 0.540762 | 2:-83143421 | None:intergenic |
| CTATGTATGGTAGCAATGGT+TGG | 0.542393 | 2:+83142613 | MsG0280011369.01.T01:CDS |
| GAAATTGTTATCCATAACTC+TGG | 0.550258 | 2:+83142678 | MsG0280011369.01.T01:CDS |
| AAGGCAACAGAATCAATAAG+TGG | 0.552750 | 2:-83142726 | None:intergenic |
| TGAAACTGTCCAATTAGGTA+TGG | 0.554450 | 2:-83142346 | None:intergenic |
| TATCAATCTAAGGGCAAAGG+AGG | 0.558454 | 2:+83143664 | MsG0280011369.01.T01:CDS |
| ATACTCAACGAGATGGATGA+TGG | 0.558720 | 2:-83143885 | None:intergenic |
| TTTAGAGCTGATTATCCAGA+AGG | 0.574156 | 2:+83142654 | MsG0280011369.01.T01:CDS |
| CCTTATCAATCTAAGGGCAA+AGG | 0.577087 | 2:+83143661 | MsG0280011369.01.T01:CDS |
| GGTGCTTATGCTGTTAGGCT+AGG | 0.577781 | 2:+83142432 | MsG0280011369.01.T01:CDS |
| CAGACTATGTATGGTAGCAA+TGG | 0.586345 | 2:+83142609 | MsG0280011369.01.T01:CDS |
| CTCATGGTCCATTACCAGGA+TGG | 0.588455 | 2:+83143407 | MsG0280011369.01.T01:CDS |
| GTTGAAGATGATCCAGCTTG+TGG | 0.588645 | 2:+83142702 | MsG0280011369.01.T01:CDS |
| TCTCTTCACATGGCTTACAA+AGG | 0.593441 | 2:+83141962 | None:intergenic |
| ATTGATCCCACCACACATTG+AGG | 0.605497 | 2:+83143381 | MsG0280011369.01.T01:CDS |
| TAGAGCTGATTATCCAGAAG+GGG | 0.606448 | 2:+83142656 | MsG0280011369.01.T01:CDS |
| ATCAATCTAAGGGCAAAGGA+GGG | 0.607832 | 2:+83143665 | MsG0280011369.01.T01:CDS |
| GAGCATCCTCAATGTGTGGT+GGG | 0.618690 | 2:-83143387 | None:intergenic |
| AGAGAAGCTTAATGTGTCAG+TGG | 0.619453 | 2:+83142545 | MsG0280011369.01.T01:CDS |
| GAGCAATTGAACTTGTAGCA+GGG | 0.620186 | 2:+83143497 | MsG0280011369.01.T01:CDS |
| CCACACATTGAGGATGCTCA+TGG | 0.621467 | 2:+83143391 | MsG0280011369.01.T01:CDS |
| TTAGAGCTGATTATCCAGAA+GGG | 0.629847 | 2:+83142655 | MsG0280011369.01.T01:CDS |
| AGGCAACAGAATCAATAAGT+GGG | 0.639484 | 2:-83142725 | None:intergenic |
| TTCAATACGTGGCAATACTG+TGG | 0.645587 | 2:+83144049 | MsG0280011369.01.T01:three_prime_UTR |
| TGAGCATCCTCAATGTGTGG+TGG | 0.646759 | 2:-83143388 | None:intergenic |
| GCGAGCTGCACTGAACGTGA+TGG | 0.648755 | 2:-83142508 | None:intergenic |
| GAACACTTCACAGTACCAGA+AGG | 0.657571 | 2:+83143469 | MsG0280011369.01.T01:CDS |
| CATCACCAACTGCAAAAGTG+AGG | 0.664865 | 2:-83143573 | None:intergenic |
| GATGCTAATAATGCATGTGA+AGG | 0.670003 | 2:+83143592 | MsG0280011369.01.T01:CDS |
| CTTGTAATAATATAGCTAGG+AGG | 0.677897 | 2:+83143932 | MsG0280011369.01.T01:three_prime_UTR |
| GTGTTCCCAAATGCATCATG+GGG | 0.678543 | 2:+83143355 | MsG0280011369.01.T01:CDS |
| ATGTTGCAAATCAAAATGCA+TGG | 0.681924 | 2:+83143856 | MsG0280011369.01.T01:three_prime_UTR |
| ACCATGAAGAATGATAACTC+TGG | 0.691442 | 2:+83143760 | MsG0280011369.01.T01:CDS |
| CCATGAGCATCCTCAATGTG+TGG | 0.691876 | 2:-83143391 | None:intergenic |
| AACCCACCTAGAAGAACCAG+AGG | 0.693541 | 2:+83142759 | MsG0280011369.01.T01:CDS |
| ATGAGAAGTATTTCAATACG+TGG | 0.697286 | 2:+83144038 | MsG0280011369.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGGTGAAATTAAATAAA+GGG | + | Chr2:83142475-83142494 | MsG0280011369.01.T01:CDS | 15.0% |
| !! | ACAAAAATATTCAATCATAT+TGG | - | Chr2:83143172-83143191 | None:intergenic | 15.0% |
| !! | TTGATGTATCAAATTAAATT+TGG | + | Chr2:83143253-83143272 | MsG0280011369.01.T01:intron | 15.0% |
| !!! | CAACTTTTATTTATATATCT+AGG | + | Chr2:83142073-83142092 | MsG0280011369.01.T01:intron | 15.0% |
| !!! | GAAAGAATTTTAAATTGATA+AGG | - | Chr2:83142246-83142265 | None:intergenic | 15.0% |
| !!! | TATCAATTTAAAATTCTTTC+AGG | + | Chr2:83142246-83142265 | MsG0280011369.01.T01:intron | 15.0% |
| !!! | TTGAATATTTTTGTACATTA+TGG | + | Chr2:83143178-83143197 | MsG0280011369.01.T01:intron | 15.0% |
| !! | ATTCTTAATTTAATGCAAAG+AGG | + | Chr2:83143220-83143239 | MsG0280011369.01.T01:intron | 20.0% |
| !! | ATTCTTGTAATAATATAGCT+AGG | + | Chr2:83143929-83143948 | MsG0280011369.01.T01:three_prime_UTR | 20.0% |
| !! | CAAAAGGTGAAATTAAATAA+AGG | + | Chr2:83142474-83142493 | MsG0280011369.01.T01:CDS | 20.0% |
| !! | TAGTAAAATACAATTAAGCT+AGG | - | Chr2:83142862-83142881 | None:intergenic | 20.0% |
| !! | TGTATACAAATTTAGATACA+TGG | - | Chr2:83142816-83142835 | None:intergenic | 20.0% |
| !!! | AACTATTGTTTTTGTTTGTT+TGG | + | Chr2:83143286-83143305 | MsG0280011369.01.T01:intron | 20.0% |
| !!! | AATTTTACATCATCAATAAC+AGG | - | Chr2:83143799-83143818 | None:intergenic | 20.0% |
| !!! | AGAAAAATTTTCCTATCATA+AGG | + | Chr2:83142148-83142167 | MsG0280011369.01.T01:intron | 20.0% |
| !!! | TATATTTTCCACACAAAAAA+AGG | - | Chr2:83142112-83142131 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTGTGGAAAATAT+AGG | + | Chr2:83142111-83142130 | MsG0280011369.01.T01:intron | 20.0% |
| ! | AATAAAAATACTCAACGAGA+TGG | - | Chr2:83143895-83143914 | None:intergenic | 25.0% |
| ! | AATTGTTTGAACCTTATGAT+AGG | - | Chr2:83142162-83142181 | None:intergenic | 25.0% |
| ! | ACTCCATACATGTAATTAAA+CGG | + | Chr2:83143145-83143164 | MsG0280011369.01.T01:intron | 25.0% |
| ! | ATAAAATCAGGACAAAAACA+AGG | + | Chr2:83142384-83142403 | MsG0280011369.01.T01:CDS | 25.0% |
| ! | GCAGCTAATTTATTGAAAAA+TGG | + | Chr2:83143310-83143329 | MsG0280011369.01.T01:intron | 25.0% |
| ! | GCATATATTTATGATGTGTT+TGG | + | Chr2:83143026-83143045 | MsG0280011369.01.T01:intron | 25.0% |
| ! | TACGTTGAATACATAAAATC+AGG | + | Chr2:83142372-83142391 | MsG0280011369.01.T01:CDS | 25.0% |
| ! | TGAAGCATACATTAAACAAA+AGG | + | Chr2:83142458-83142477 | MsG0280011369.01.T01:CDS | 25.0% |
| !! | AAAAATGGAAACTTTGAAGA+AGG | + | Chr2:83143325-83143344 | MsG0280011369.01.T01:CDS | 25.0% |
| !!! | TATGTATACCTTTTTTTGTG+TGG | + | Chr2:83142101-83142120 | MsG0280011369.01.T01:intron | 25.0% |
| !!! | TTTGATTTGCAACATTACTT+AGG | - | Chr2:83143851-83143870 | None:intergenic | 25.0% |
| ATGTTGCAAATCAAAATGCA+TGG | + | Chr2:83143856-83143875 | MsG0280011369.01.T01:three_prime_UTR | 30.0% | |
| ATTACTTAGGTATGCTTGTA+GGG | - | Chr2:83143838-83143857 | None:intergenic | 30.0% | |
| ATTCCAATACAGACTATGTA+TGG | + | Chr2:83142600-83142619 | MsG0280011369.01.T01:CDS | 30.0% | |
| CAAGTTCCTTATCAATCTAA+GGG | + | Chr2:83143655-83143674 | MsG0280011369.01.T01:CDS | 30.0% | |
| CTTGTAATAATATAGCTAGG+AGG | + | Chr2:83143932-83143951 | MsG0280011369.01.T01:three_prime_UTR | 30.0% | |
| GAAATTGTTATCCATAACTC+TGG | + | Chr2:83142678-83142697 | MsG0280011369.01.T01:CDS | 30.0% | |
| TCAAGTTCCTTATCAATCTA+AGG | + | Chr2:83143654-83143673 | MsG0280011369.01.T01:CDS | 30.0% | |
| TCATGGTGTAAAATGTACTT+AGG | - | Chr2:83143747-83143766 | None:intergenic | 30.0% | |
| TTATGATGTGTTTGGATTGA+CGG | + | Chr2:83143034-83143053 | MsG0280011369.01.T01:intron | 30.0% | |
| ! | ACTTCTGAGAAAAGAGATTA+TGG | + | Chr2:83142573-83142592 | MsG0280011369.01.T01:CDS | 30.0% |
| ! | GACATAAACTTTTCCAATTG+TGG | - | Chr2:83143554-83143573 | None:intergenic | 30.0% |
| ! | GTTAATGTGATTTTCGCAAT+TGG | + | Chr2:83143080-83143099 | MsG0280011369.01.T01:intron | 30.0% |
| ! | TAATCTCTTTTCTCAGAAGT+TGG | - | Chr2:83142573-83142592 | None:intergenic | 30.0% |
| !! | ATGAGAAGTATTTCAATACG+TGG | + | Chr2:83144038-83144057 | MsG0280011369.01.T01:three_prime_UTR | 30.0% |
| !!! | TCTTTTTCAAGAGCACTTTT+TGG | - | Chr2:83142048-83142067 | None:intergenic | 30.0% |
| AAGGCAACAGAATCAATAAG+TGG | - | Chr2:83142729-83142748 | None:intergenic | 35.0% | |
| ACCAGAGTTATCATTCTTCA+TGG | - | Chr2:83143764-83143783 | None:intergenic | 35.0% | |
| ACCATGAAGAATGATAACTC+TGG | + | Chr2:83143760-83143779 | MsG0280011369.01.T01:CDS | 35.0% | |
| AGGCAACAGAATCAATAAGT+GGG | - | Chr2:83142728-83142747 | None:intergenic | 35.0% | |
| ATACCTAATTGGACAGTTTC+AGG | + | Chr2:83142348-83142367 | MsG0280011369.01.T01:CDS | 35.0% | |
| CATTACTTAGGTATGCTTGT+AGG | - | Chr2:83143839-83143858 | None:intergenic | 35.0% | |
| CTAACATGTTCCTTATCACA+TGG | + | Chr2:83142012-83142031 | MsG0280011369.01.T01:intron | 35.0% | |
| CTACCATACATAGTCTGTAT+TGG | - | Chr2:83142606-83142625 | None:intergenic | 35.0% | |
| GATGCTAATAATGCATGTGA+AGG | + | Chr2:83143592-83143611 | MsG0280011369.01.T01:CDS | 35.0% | |
| GGACCGTTTAATTACATGTA+TGG | - | Chr2:83143151-83143170 | None:intergenic | 35.0% | |
| GTGGAAAATATAGGTCTCAT+GGG | + | Chr2:83142120-83142139 | MsG0280011369.01.T01:intron | 35.0% | |
| TAGGGAACAAAAATTACCTC+TGG | - | Chr2:83142778-83142797 | None:intergenic | 35.0% | |
| TATCCTGAAACTGTCCAATT+AGG | - | Chr2:83142354-83142373 | None:intergenic | 35.0% | |
| TATGTATGGTAGCAATGGTT+GGG | + | Chr2:83142614-83142633 | MsG0280011369.01.T01:CDS | 35.0% | |
| TGAAACTGTCCAATTAGGTA+TGG | - | Chr2:83142349-83142368 | None:intergenic | 35.0% | |
| TGGAAAATATAGGTCTCATG+GGG | + | Chr2:83142121-83142140 | MsG0280011369.01.T01:intron | 35.0% | |
| TGTGGAAAATATAGGTCTCA+TGG | + | Chr2:83142119-83142138 | MsG0280011369.01.T01:intron | 35.0% | |
| TTAGAGCTGATTATCCAGAA+GGG | + | Chr2:83142655-83142674 | MsG0280011369.01.T01:CDS | 35.0% | |
| ! | AAAACAAGGTGACATGCTTT+TGG | + | Chr2:83142398-83142417 | MsG0280011369.01.T01:CDS | 35.0% |
| ! | TAGAGGCAAACTTCGTTTTA+AGG | + | Chr2:83143693-83143712 | MsG0280011369.01.T01:CDS | 35.0% |
| ! | TCAATTGCTCTTTTTCCTTC+TGG | - | Chr2:83143487-83143506 | None:intergenic | 35.0% |
| ! | TTTAGAGCTGATTATCCAGA+AGG | + | Chr2:83142654-83142673 | MsG0280011369.01.T01:CDS | 35.0% |
| !! | AAATTACCTCTGGTTCTTCT+AGG | - | Chr2:83142768-83142787 | None:intergenic | 35.0% |
| !! | CCAAAAGCATCAAACCTAAA+GGG | + | Chr2:83142300-83142319 | MsG0280011369.01.T01:CDS | 35.0% |
| !! | CTTTCAGGTTTATTGCCAAA+TGG | + | Chr2:83142261-83142280 | MsG0280011369.01.T01:intron | 35.0% |
| !! | TATTGATTCTGTTGCCTTGA+AGG | + | Chr2:83142731-83142750 | MsG0280011369.01.T01:CDS | 35.0% |
| !! | TCCAAAAGCATCAAACCTAA+AGG | + | Chr2:83142299-83142318 | MsG0280011369.01.T01:CDS | 35.0% |
| AATACTCCCCATGATGCATT+TGG | - | Chr2:83143364-83143383 | None:intergenic | 40.0% | |
| ACATGTTCCTTATCACATGG+TGG | + | Chr2:83142015-83142034 | MsG0280011369.01.T01:intron | 40.0% | |
| AGAGAAGCTTAATGTGTCAG+TGG | + | Chr2:83142545-83142564 | MsG0280011369.01.T01:CDS | 40.0% | |
| AGAGATTCAACTATCCATCC+TGG | - | Chr2:83143424-83143443 | None:intergenic | 40.0% | |
| AGAGCAATTGAACTTGTAGC+AGG | + | Chr2:83143496-83143515 | MsG0280011369.01.T01:CDS | 40.0% | |
| AGGAACATGTTAGTAAGTGC+AGG | - | Chr2:83142005-83142024 | None:intergenic | 40.0% | |
| ATACTCAACGAGATGGATGA+TGG | - | Chr2:83143888-83143907 | None:intergenic | 40.0% | |
| ATACTCCCCATGATGCATTT+GGG | - | Chr2:83143363-83143382 | None:intergenic | 40.0% | |
| ATCAATCTAAGGGCAAAGGA+GGG | + | Chr2:83143665-83143684 | MsG0280011369.01.T01:CDS | 40.0% | |
| ATGGACATGCACTTCTATGT+AGG | - | Chr2:83142797-83142816 | None:intergenic | 40.0% | |
| ATGTGTTCCCAAATGCATCA+TGG | + | Chr2:83143353-83143372 | MsG0280011369.01.T01:CDS | 40.0% | |
| CAAGAAGTCTTCACCACAAT+TGG | + | Chr2:83143538-83143557 | MsG0280011369.01.T01:CDS | 40.0% | |
| CAGACTATGTATGGTAGCAA+TGG | + | Chr2:83142609-83142628 | MsG0280011369.01.T01:CDS | 40.0% | |
| CATCTTCAACACCAGAGTTA+TGG | - | Chr2:83142692-83142711 | None:intergenic | 40.0% | |
| CCAACTTCAAAGTCACCATT+TGG | - | Chr2:83142279-83142298 | None:intergenic | 40.0% | |
| CCAATTAGGTATGGCATCAT+GGG | - | Chr2:83142340-83142359 | None:intergenic | 40.0% | |
| CCTTATCAATCTAAGGGCAA+AGG | + | Chr2:83143661-83143680 | MsG0280011369.01.T01:CDS | 40.0% | |
| CCTTTGCCCTTAGATTGATA+AGG | - | Chr2:83143664-83143683 | None:intergenic | 40.0% | |
| CTATGTATGGTAGCAATGGT+TGG | + | Chr2:83142613-83142632 | MsG0280011369.01.T01:CDS | 40.0% | |
| GAGCAATTGAACTTGTAGCA+GGG | + | Chr2:83143497-83143516 | MsG0280011369.01.T01:CDS | 40.0% | |
| GATGCATTTGGGAACACATA+TGG | - | Chr2:83143352-83143371 | None:intergenic | 40.0% | |
| GTTGGGAATCATTTGCTTGT+GGG | + | Chr2:83142631-83142650 | MsG0280011369.01.T01:CDS | 40.0% | |
| TAGAGCTGATTATCCAGAAG+GGG | + | Chr2:83142656-83142675 | MsG0280011369.01.T01:CDS | 40.0% | |
| TATCAATCTAAGGGCAAAGG+AGG | + | Chr2:83143664-83143683 | MsG0280011369.01.T01:CDS | 40.0% | |
| TCAACTATCCATCCTGGTAA+TGG | - | Chr2:83143418-83143437 | None:intergenic | 40.0% | |
| TCCAATTAGGTATGGCATCA+TGG | - | Chr2:83142341-83142360 | None:intergenic | 40.0% | |
| TCTTGTTCCACCATGTGATA+AGG | - | Chr2:83142025-83142044 | None:intergenic | 40.0% | |
| TGGACATGCACTTCTATGTA+GGG | - | Chr2:83142796-83142815 | None:intergenic | 40.0% | |
| TGGATAACAATTTCCCCTTC+TGG | - | Chr2:83142672-83142691 | None:intergenic | 40.0% | |
| TGTGTTCCCAAATGCATCAT+GGG | + | Chr2:83143354-83143373 | MsG0280011369.01.T01:CDS | 40.0% | |
| TTCAATACGTGGCAATACTG+TGG | + | Chr2:83144049-83144068 | MsG0280011369.01.T01:three_prime_UTR | 40.0% | |
| !! | ATGACTGTAGAAGCATTTGC+TGG | + | Chr2:83143619-83143638 | MsG0280011369.01.T01:CDS | 40.0% |
| !! | ATGCTTTTGGTTGTACCAGA+AGG | + | Chr2:83142411-83142430 | MsG0280011369.01.T01:CDS | 40.0% |
| !! | CCAAATGGTGACTTTGAAGT+TGG | + | Chr2:83142276-83142295 | MsG0280011369.01.T01:CDS | 40.0% |
| !! | CCCTTTAGGTTTGATGCTTT+TGG | - | Chr2:83142303-83142322 | None:intergenic | 40.0% |
| !! | GATAACTCTGGTTCTCTTTG+TGG | + | Chr2:83143772-83143791 | MsG0280011369.01.T01:CDS | 40.0% |
| !! | TATGTCCTCACTTTTGCAGT+TGG | + | Chr2:83143568-83143587 | MsG0280011369.01.T01:CDS | 40.0% |
| ATGTTAGTAAGTGCAGGCTG+TGG | - | Chr2:83141999-83142018 | None:intergenic | 45.0% | |
| ATTGATCCCACCACACATTG+AGG | + | Chr2:83143381-83143400 | MsG0280011369.01.T01:CDS | 45.0% | |
| CATCACCAACTGCAAAAGTG+AGG | - | Chr2:83143576-83143595 | None:intergenic | 45.0% | |
| CCCATGATGCCATACCTAAT+TGG | + | Chr2:83142337-83142356 | MsG0280011369.01.T01:CDS | 45.0% | |
| CGACAAGACGTACTAGGATT+AGG | + | Chr2:83143719-83143738 | MsG0280011369.01.T01:CDS | 45.0% | |
| CTAACAGCATAAGCACCTTC+TGG | - | Chr2:83142429-83142448 | None:intergenic | 45.0% | |
| GAACACTTCACAGTACCAGA+AGG | + | Chr2:83143469-83143488 | MsG0280011369.01.T01:CDS | 45.0% | |
| GGTTGGGAATCATTTGCTTG+TGG | + | Chr2:83142630-83142649 | MsG0280011369.01.T01:CDS | 45.0% | |
| GTGTTCCCAAATGCATCATG+GGG | + | Chr2:83143355-83143374 | MsG0280011369.01.T01:CDS | 45.0% | |
| GTTGAAGATGATCCAGCTTG+TGG | + | Chr2:83142702-83142721 | MsG0280011369.01.T01:CDS | 45.0% | |
| TGTTAGTAAGTGCAGGCTGT+GGG | - | Chr2:83141998-83142017 | None:intergenic | 45.0% | |
| TTGTCACTACTGTGCCCTTT+AGG | - | Chr2:83142317-83142336 | None:intergenic | 45.0% | |
| ! | AGGTGGGTTCAAAACCTTCA+AGG | - | Chr2:83142748-83142767 | None:intergenic | 45.0% |
| !! | CAGAAGGTGCTTATGCTGTT+AGG | + | Chr2:83142427-83142446 | MsG0280011369.01.T01:CDS | 45.0% |
| !! | TACCTCTGGTTCTTCTAGGT+GGG | - | Chr2:83142764-83142783 | None:intergenic | 45.0% |
| !! | TTACCTCTGGTTCTTCTAGG+TGG | - | Chr2:83142765-83142784 | None:intergenic | 45.0% |
| AACCCACCTAGAAGAACCAG+AGG | + | Chr2:83142759-83142778 | MsG0280011369.01.T01:CDS | 50.0% | |
| AGGCTACGACAAGACGTACT+AGG | + | Chr2:83143713-83143732 | MsG0280011369.01.T01:CDS | 50.0% | |
| CCACACATTGAGGATGCTCA+TGG | + | Chr2:83143391-83143410 | MsG0280011369.01.T01:CDS | 50.0% | |
| CCATGAGCATCCTCAATGTG+TGG | - | Chr2:83143394-83143413 | None:intergenic | 50.0% | |
| CTCATGGTCCATTACCAGGA+TGG | + | Chr2:83143407-83143426 | MsG0280011369.01.T01:CDS | 50.0% | |
| GAGCATCCTCAATGTGTGGT+GGG | - | Chr2:83143390-83143409 | None:intergenic | 50.0% | |
| GATGCTCATGGTCCATTACC+AGG | + | Chr2:83143403-83143422 | MsG0280011369.01.T01:CDS | 50.0% | |
| GGTGCTTATGCTGTTAGGCT+AGG | + | Chr2:83142432-83142451 | MsG0280011369.01.T01:CDS | 50.0% | |
| TCAATAAGTGGGCCACAAGC+TGG | - | Chr2:83142717-83142736 | None:intergenic | 50.0% | |
| TGAGCATCCTCAATGTGTGG+TGG | - | Chr2:83143391-83143410 | None:intergenic | 50.0% | |
| !! | GGCAAAGGAGGGTTTGTTAG+AGG | + | Chr2:83143676-83143695 | MsG0280011369.01.T01:CDS | 50.0% |
| GCGAGCTGCACTGAACGTGA+TGG | - | Chr2:83142511-83142530 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 83141971 | 83144083 | 83141971 | ID=MsG0280011369.01;Name=MsG0280011369.01 |
| Chr2 | mRNA | 83141971 | 83144083 | 83141971 | ID=MsG0280011369.01.T01;Parent=MsG0280011369.01;Name=MsG0280011369.01.T01;_AED=0.47;_eAED=0.48;_QI=0|0.5|0.33|1|1|1|3|231|354 |
| Chr2 | exon | 83141971 | 83141983 | 83141971 | ID=MsG0280011369.01.T01:exon:12652;Parent=MsG0280011369.01.T01 |
| Chr2 | exon | 83142268 | 83142780 | 83142268 | ID=MsG0280011369.01.T01:exon:12653;Parent=MsG0280011369.01.T01 |
| Chr2 | exon | 83143314 | 83144083 | 83143314 | ID=MsG0280011369.01.T01:exon:12654;Parent=MsG0280011369.01.T01 |
| Chr2 | CDS | 83141971 | 83141983 | 83141971 | ID=MsG0280011369.01.T01:cds;Parent=MsG0280011369.01.T01 |
| Chr2 | CDS | 83142268 | 83142780 | 83142268 | ID=MsG0280011369.01.T01:cds;Parent=MsG0280011369.01.T01 |
| Chr2 | CDS | 83143314 | 83143852 | 83143314 | ID=MsG0280011369.01.T01:cds;Parent=MsG0280011369.01.T01 |
| Chr2 | three_prime_UTR | 83143853 | 83144083 | 83143853 | ID=MsG0280011369.01.T01:three_prime_utr;Parent=MsG0280011369.01.T01 |
| Gene Sequence |
| Protein sequence |
