Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019817.01.T01 | XP_004506314.1 | 78.372 | 393 | 62 | 2 | 1 | 393 | 1 | 370 | 0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000028.01 | MsG0480019817.01 | 0.848693 | 5.208563e-60 | 9.638421e-57 |
| MsG0180000029.01 | MsG0480019817.01 | 0.828454 | 8.912445e-55 | 8.863015e-52 |
| MsG0180001029.01 | MsG0480019817.01 | 0.834359 | 3.137551e-56 | 3.714723e-53 |
| MsG0180003320.01 | MsG0480019817.01 | 0.820136 | 8.044028e-53 | 6.312428e-50 |
| MsG0180004830.01 | MsG0480019817.01 | 0.815496 | 8.974689e-52 | 6.197727e-49 |
| MsG0180005127.01 | MsG0480019817.01 | 0.802025 | 6.822192e-49 | 3.306850e-46 |
| MsG0180005267.01 | MsG0480019817.01 | 0.809486 | 1.847502e-50 | 1.086091e-47 |
| MsG0180006010.01 | MsG0480019817.01 | 0.821924 | 3.116546e-53 | 2.570602e-50 |
| MsG0180006183.01 | MsG0480019817.01 | 0.812469 | 4.173116e-51 | 2.655702e-48 |
| MsG0180006253.01 | MsG0480019817.01 | 0.814220 | 1.721797e-51 | 1.148450e-48 |
| MsG0280010617.01 | MsG0480019817.01 | 0.820884 | 5.416310e-53 | 4.339285e-50 |
| MsG0280011128.01 | MsG0480019817.01 | 0.810712 | 1.005623e-50 | 6.106459e-48 |
| MsG0380011701.01 | MsG0480019817.01 | 0.810170 | 1.316855e-50 | 7.882076e-48 |
| MsG0380012222.01 | MsG0480019817.01 | 0.849510 | 3.087645e-60 | 5.866623e-57 |
| MsG0480018692.01 | MsG0480019817.01 | 0.800239 | 1.582201e-48 | 7.329982e-46 |
| MsG0480019171.01 | MsG0480019817.01 | 0.803084 | 4.127482e-49 | 2.055250e-46 |
| MsG0480019663.01 | MsG0480019817.01 | 0.804347 | 2.256570e-49 | 1.160775e-46 |
| MsG0480019817.01 | MsG0480019818.01 | 0.866191 | 3.414138e-65 | 1.140687e-61 |
| MsG0480019817.01 | MsG0480020904.01 | 0.808304 | 3.308426e-50 | 1.885027e-47 |
| MsG0480019817.01 | MsG0480021091.01 | 0.827364 | 1.629715e-54 | 1.570185e-51 |
| MsG0480019817.01 | MsG0480021224.01 | 0.820158 | 7.950728e-53 | 6.242679e-50 |
| MsG0480019817.01 | MsG0480021227.01 | 0.807282 | 5.453571e-50 | 3.025367e-47 |
| MsG0480019817.01 | MsG0480021230.01 | 0.825331 | 4.968123e-54 | 4.514804e-51 |
| MsG0480019817.01 | MsG0480021231.01 | 0.831598 | 1.524833e-55 | 1.662668e-52 |
| MsG0480019817.01 | MsG0480021234.01 | 0.808848 | 2.531652e-50 | 1.463122e-47 |
| MsG0480019817.01 | MsG0580024649.01 | 0.810280 | 1.246754e-50 | 7.483745e-48 |
| MsG0480019817.01 | MsG0580024980.01 | 0.800964 | 1.125582e-48 | 5.311714e-46 |
| MsG0480019817.01 | MsG0580024994.01 | 0.824758 | 6.784975e-54 | 6.066144e-51 |
| MsG0480019817.01 | MsG0580025007.01 | 0.807975 | 3.886224e-50 | 2.195117e-47 |
| MsG0480019817.01 | MsG0580025024.01 | 0.809770 | 1.605478e-50 | 9.510260e-48 |
| MsG0480019817.01 | MsG0580025633.01 | 0.803134 | 4.029025e-49 | 2.008895e-46 |
| MsG0480019817.01 | MsG0580026180.01 | 0.814001 | 1.924318e-51 | 1.275969e-48 |
| MsG0480019817.01 | MsG0580026521.01 | 0.827246 | 1.738971e-54 | 1.669525e-51 |
| MsG0480019817.01 | MsG0580030141.01 | 0.800850 | 1.187470e-48 | 5.587506e-46 |
| MsG0480019817.01 | MsG0680031200.01 | 0.836798 | 7.574026e-57 | 9.649175e-54 |
| MsG0480019817.01 | MsG0680032045.01 | 0.800113 | 1.678475e-48 | 7.751046e-46 |
| MsG0480019817.01 | MsG0680032932.01 | 0.827926 | 1.194267e-54 | 1.169430e-51 |
| MsG0480019817.01 | MsG0680034238.01 | 0.809746 | 1.624897e-50 | 9.619201e-48 |
| MsG0480019817.01 | MsG0680035344.01 | 0.802315 | 5.945813e-49 | 2.903669e-46 |
| MsG0480019817.01 | MsG0780035930.01 | 0.807520 | 4.856068e-50 | 2.710574e-47 |
| MsG0480019817.01 | MsG0780038318.01 | 0.819224 | 1.299202e-52 | 9.938225e-50 |
| MsG0480019817.01 | MsG0780038647.01 | 0.800574 | 1.352328e-48 | 6.318527e-46 |
| MsG0480019817.01 | MsG0780038657.01 | 0.821132 | 4.750448e-53 | 3.832089e-50 |
| MsG0480019817.01 | MsG0780039373.01 | 0.813898 | 2.027356e-51 | 1.340586e-48 |
| MsG0480019817.01 | MsG0780039912.01 | 0.809423 | 1.906446e-50 | 1.118916e-47 |
| MsG0480019817.01 | MsG0780040716.01 | 0.808795 | 2.598435e-50 | 1.499587e-47 |
| MsG0480019817.01 | MsG0780040719.01 | 0.801435 | 9.014729e-49 | 4.304828e-46 |
| MsG0480019817.01 | MsG0780040847.01 | 0.829869 | 4.043337e-55 | 4.191210e-52 |
| MsG0480019817.01 | MsG0780041248.01 | 0.801592 | 8.372967e-49 | 4.014048e-46 |
| MsG0480019817.01 | MsG0780041385.01 | -0.803235 | 3.840035e-49 | 1.919638e-46 |
| MsG0480019817.01 | MsG0780041823.01 | 0.849245 | 3.659429e-60 | 6.895657e-57 |
| MsG0480019817.01 | MsG0880043459.01 | 0.808699 | 2.724002e-50 | 1.568111e-47 |
| MsG0480019817.01 | MsG0880043688.01 | 0.802569 | 5.272148e-49 | 2.591116e-46 |
| MsG0480019817.01 | MsG0880043882.01 | 0.811722 | 6.073096e-51 | 3.787582e-48 |
| MsG0480019817.01 | MsG0880044028.01 | 0.800870 | 1.176378e-48 | 5.538079e-46 |
| MsG0480019817.01 | MsG0880044712.01 | 0.837863 | 4.042967e-57 | 5.321196e-54 |
| MsG0480019817.01 | MsG0880044834.01 | -0.819386 | 1.193315e-52 | 9.169166e-50 |
| MsG0480019817.01 | MsG0880045725.01 | 0.801570 | 8.461076e-49 | 4.054093e-46 |
| MsG0480019817.01 | MsG0880045801.01 | 0.833107 | 6.446469e-56 | 7.351624e-53 |
| MsG0480019817.01 | MsG0880046403.01 | 0.811889 | 5.584290e-51 | 3.498051e-48 |
| MsG0480019817.01 | MsG0880046870.01 | 0.846663 | 1.885210e-59 | 3.268866e-56 |
| MsG0480019817.01 | MsG0880046923.01 | 0.811057 | 8.469640e-51 | 5.190505e-48 |
| MsG0480019817.01 | MsG0880046946.01 | 0.818641 | 1.763447e-52 | 1.327328e-49 |
| MsG0480019817.01 | MsG0880047057.01 | 0.800211 | 1.603392e-48 | 7.422792e-46 |
| MsG0480019817.01 | MsG0880047312.01 | 0.802496 | 5.458664e-49 | 2.677791e-46 |
| MsG0480019817.01 | MsG0880047450.01 | 0.823665 | 1.225954e-53 | 1.062464e-50 |
| MsG0380015513.01 | MsG0480019817.01 | 0.824046 | 9.976246e-54 | 8.738288e-51 |
| MsG0380016250.01 | MsG0480019817.01 | 0.820966 | 5.186665e-53 | 4.165053e-50 |
| MsG0380016490.01 | MsG0480019817.01 | 0.846987 | 1.537067e-59 | 2.692688e-56 |
| MsG0380017168.01 | MsG0480019817.01 | 0.813817 | 2.112188e-51 | 1.393616e-48 |
| MsG0380017901.01 | MsG0480019817.01 | 0.836857 | 7.317136e-57 | 9.338070e-54 |
| MsG0480018362.01 | MsG0480019817.01 | 0.838614 | 2.590037e-57 | 3.487898e-54 |
| MsG0280006851.01 | MsG0480019817.01 | 0.821881 | 3.189510e-53 | 2.627651e-50 |
| MsG0280007689.01 | MsG0480019817.01 | 0.854928 | 8.877537e-62 | 2.015022e-58 |
| MsG0280009432.01 | MsG0480019817.01 | 0.824433 | 8.092698e-54 | 7.166793e-51 |
| MsG0280009526.01 | MsG0480019817.01 | 0.805359 | 1.386791e-49 | 7.322117e-47 |
| MsG0280010270.01 | MsG0480019817.01 | 0.813541 | 2.429197e-51 | 1.590866e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0280011369.01 | MsG0480019817.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019817.01.T01 | MTR_4g039680 | 88.747 | 391 | 19 | 2 | 4 | 393 | 1 | 367 | 0.0 | 698 |
| MsG0480019817.01.T01 | MTR_4g039720 | 80.506 | 395 | 51 | 3 | 1 | 393 | 1 | 371 | 0.0 | 644 |
| MsG0480019817.01.T01 | MTR_4g039740 | 79.795 | 391 | 54 | 2 | 4 | 393 | 1 | 367 | 0.0 | 640 |
| MsG0480019817.01.T01 | MTR_0045s0110 | 73.146 | 391 | 80 | 2 | 4 | 393 | 1 | 367 | 0.0 | 575 |
| MsG0480019817.01.T01 | MTR_1g011800 | 49.718 | 354 | 151 | 4 | 37 | 387 | 39 | 368 | 1.38e-119 | 352 |
| MsG0480019817.01.T01 | MTR_2g103170 | 44.011 | 359 | 168 | 4 | 37 | 387 | 28 | 361 | 6.64e-101 | 304 |
| MsG0480019817.01.T01 | MTR_2g019600 | 40.282 | 355 | 186 | 3 | 37 | 389 | 35 | 365 | 7.41e-87 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019817.01.T01 | AT3G08030 | 62.912 | 364 | 109 | 3 | 32 | 393 | 26 | 365 | 8.61e-167 | 471 |
| MsG0480019817.01.T01 | AT3G08030 | 63.401 | 347 | 101 | 3 | 49 | 393 | 1 | 323 | 1.93e-160 | 454 |
| MsG0480019817.01.T01 | AT2G41810 | 53.786 | 383 | 147 | 5 | 14 | 389 | 7 | 366 | 2.42e-141 | 407 |
| MsG0480019817.01.T01 | AT2G41800 | 55.493 | 355 | 134 | 3 | 37 | 390 | 36 | 367 | 7.35e-141 | 406 |
| MsG0480019817.01.T01 | AT5G11420 | 51.558 | 353 | 145 | 3 | 37 | 387 | 30 | 358 | 1.65e-123 | 362 |
| MsG0480019817.01.T01 | AT5G25460 | 48.446 | 386 | 172 | 4 | 4 | 387 | 1 | 361 | 7.13e-123 | 360 |
| MsG0480019817.01.T01 | AT4G32460 | 49.020 | 357 | 148 | 3 | 37 | 387 | 29 | 357 | 7.31e-120 | 352 |
| MsG0480019817.01.T01 | AT4G32460 | 49.020 | 357 | 148 | 3 | 37 | 387 | 29 | 357 | 7.31e-120 | 352 |
| MsG0480019817.01.T01 | AT4G32460 | 49.275 | 345 | 141 | 3 | 49 | 387 | 1 | 317 | 1.31e-117 | 345 |
| MsG0480019817.01.T01 | AT4G32460 | 49.275 | 345 | 141 | 3 | 49 | 387 | 1 | 317 | 1.31e-117 | 345 |
| MsG0480019817.01.T01 | AT1G80240 | 47.309 | 353 | 160 | 3 | 37 | 387 | 32 | 360 | 3.88e-107 | 320 |
| MsG0480019817.01.T01 | AT1G29980 | 39.286 | 364 | 186 | 4 | 37 | 389 | 7 | 346 | 1.19e-86 | 268 |
| MsG0480019817.01.T01 | AT1G29980 | 39.286 | 364 | 186 | 4 | 37 | 389 | 43 | 382 | 4.06e-86 | 267 |
| MsG0480019817.01.T01 | AT2G34510 | 39.722 | 360 | 186 | 4 | 37 | 389 | 43 | 378 | 5.98e-85 | 264 |
| MsG0480019817.01.T01 | AT2G34510 | 40.506 | 316 | 157 | 4 | 81 | 389 | 1 | 292 | 4.41e-75 | 236 |
| MsG0480019817.01.T01 | AT5G14150 | 26.500 | 400 | 228 | 13 | 14 | 393 | 8 | 361 | 9.54e-29 | 115 |
| MsG0480019817.01.T01 | AT5G14150 | 26.500 | 400 | 228 | 13 | 14 | 393 | 8 | 361 | 9.54e-29 | 115 |
Find 115 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACAAGGATTGATGATTT+TGG | 0.100468 | 4:+27810180 | MsG0480019817.01.T01:CDS |
| CCATTTGTTGTGTTGAAAAT+AGG | 0.110995 | 4:-27809775 | None:intergenic |
| CTTTGAATCAATGAATTTAA+TGG | 0.135571 | 4:-27809869 | None:intergenic |
| CTTAAAGTTTACTTCCAAAA+TGG | 0.175065 | 4:+27808476 | MsG0480019817.01.T01:intron |
| CTTGTTTCCTTTATGAATCT+TGG | 0.194424 | 4:-27808521 | None:intergenic |
| TGGTCTCTTTGCAGATAATT+TGG | 0.223994 | 4:+27809720 | MsG0480019817.01.T01:CDS |
| CCCTACTTGTGGTCCACTTT+TGG | 0.234226 | 4:+27808910 | MsG0480019817.01.T01:CDS |
| TCTCTTCAAAGTTCCCATTT+TGG | 0.257255 | 4:-27808490 | None:intergenic |
| CATTTGTTGTGTTGAAAATA+GGG | 0.280881 | 4:-27809774 | None:intergenic |
| TTCATATTGTAGACTTTGTT+TGG | 0.283032 | 4:-27809976 | None:intergenic |
| TCCTTTATGAATCTTGGGTT+TGG | 0.305420 | 4:-27808515 | None:intergenic |
| CTGGTTTGACCTTGATGGTT+TGG | 0.309128 | 4:-27808688 | None:intergenic |
| CAATGGTATGCTCTAATATT+AGG | 0.317657 | 4:+27808713 | MsG0480019817.01.T01:CDS |
| AAAGTTCCTTTCAAATCTTT+AGG | 0.319577 | 4:+27810075 | MsG0480019817.01.T01:CDS |
| TAGACCATTGATTTCCCATT+TGG | 0.321175 | 4:-27808567 | None:intergenic |
| CTTCTTGAATACCAGGGTTA+TGG | 0.332265 | 4:-27808886 | None:intergenic |
| TTGTTTCCTTTATGAATCTT+GGG | 0.332661 | 4:-27808520 | None:intergenic |
| AATGAATTTAATGGCTTTGA+GGG | 0.333087 | 4:-27809860 | None:intergenic |
| TGGTTTGACCTTGATGGTTT+GGG | 0.339163 | 4:-27808687 | None:intergenic |
| CTCTAATATTAGGAGCTTCT+AGG | 0.347807 | 4:+27808723 | MsG0480019817.01.T01:CDS |
| CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4:+27808826 | MsG0480019817.01.T01:CDS |
| AAGAATTTCCAAGTGCCATT+TGG | 0.355884 | 4:+27809889 | MsG0480019817.01.T01:CDS |
| TTGACCTGGTTTGACCTTGA+TGG | 0.379172 | 4:-27808693 | None:intergenic |
| GACACAAGATCTTGTTGCTT+TGG | 0.386124 | 4:-27809811 | None:intergenic |
| ATGAACCATGTCCATTTGTC+TGG | 0.387965 | 4:+27808980 | MsG0480019817.01.T01:CDS |
| TTCCAAGTGCCATTTGGAAA+TGG | 0.398171 | 4:+27809895 | MsG0480019817.01.T01:CDS |
| TTGTGTCACCACTCCCTGGC+TGG | 0.399232 | 4:+27809827 | MsG0480019817.01.T01:CDS |
| TTAAAGTTTACTTCCAAAAT+GGG | 0.399296 | 4:+27808477 | MsG0480019817.01.T01:intron |
| CAAACACTTTATAGCCTCAA+TGG | 0.405480 | 4:+27808809 | MsG0480019817.01.T01:CDS |
| GGAGCAGTGGAGCTTGTTGC+AGG | 0.407672 | 4:+27809916 | MsG0480019817.01.T01:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4:+27808835 | MsG0480019817.01.T01:CDS |
| CAATGAATTTAATGGCTTTG+AGG | 0.411192 | 4:-27809861 | None:intergenic |
| AACATTACCTTCTGGTGACC+TGG | 0.416189 | 4:-27807552 | None:intergenic |
| CTCCATTTCCAAATGGCACT+TGG | 0.418379 | 4:-27809897 | None:intergenic |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4:+27808773 | MsG0480019817.01.T01:CDS |
| GCCAAACCCAAGATTCATAA+AGG | 0.423787 | 4:+27808514 | MsG0480019817.01.T01:CDS |
| ACAATTGGAGATGGAAGAAA+TGG | 0.425275 | 4:+27810003 | MsG0480019817.01.T01:CDS |
| ATAAAGGAAACAAGACTCAT+TGG | 0.425904 | 4:+27808530 | MsG0480019817.01.T01:CDS |
| TACAATATGAAATTCACAAT+TGG | 0.427534 | 4:+27809988 | MsG0480019817.01.T01:CDS |
| GACCTTGATGGTTTGGGAGA+TGG | 0.428706 | 4:-27808681 | None:intergenic |
| AGACCATTGATTTCCCATTT+GGG | 0.443676 | 4:-27808566 | None:intergenic |
| GGAAACATGCTCTTCCCAAA+TGG | 0.452234 | 4:+27808552 | MsG0480019817.01.T01:CDS |
| ACAAGATCTTGTTGCTTTGG+AGG | 0.453040 | 4:-27809808 | None:intergenic |
| CCTTTCAAATCTTTAGGAAA+GGG | 0.458801 | 4:+27810081 | MsG0480019817.01.T01:CDS |
| GATTCTCTGCAGCATGCAAA+AGG | 0.462931 | 4:+27809002 | MsG0480019817.01.T01:CDS |
| AAGAACATGCCTCCAGGTTG+TGG | 0.465220 | 4:-27808611 | None:intergenic |
| AGAAGGAGAGTCTAAGCAAC+AGG | 0.470064 | 4:-27810243 | None:intergenic |
| GAAACATGCTCTTCCCAAAT+GGG | 0.472359 | 4:+27808553 | MsG0480019817.01.T01:CDS |
| GCATGAACTCCATGCGACAC+TGG | 0.480181 | 4:-27808635 | None:intergenic |
| TCATTACCTCTTGTCGGCAT+CGG | 0.480847 | 4:-27808961 | None:intergenic |
| ATCTCTGGAGGGCCACAACC+TGG | 0.481932 | 4:+27808599 | MsG0480019817.01.T01:CDS |
| CATGGTTCATTACCTCTTGT+CGG | 0.488660 | 4:-27808967 | None:intergenic |
| GGTCTAGTAGAATATATCTC+TGG | 0.497686 | 4:+27808584 | MsG0480019817.01.T01:CDS |
| CTGCAGAGAATCCAGACAAA+TGG | 0.500357 | 4:-27808991 | None:intergenic |
| TAAAGGAAACAAGACTCATT+GGG | 0.502085 | 4:+27808531 | MsG0480019817.01.T01:CDS |
| ATGAAATTCACAATTGGAGA+TGG | 0.505665 | 4:+27809994 | MsG0480019817.01.T01:CDS |
| AATGGACCCTCTTCAAAGCC+AGG | 0.508731 | 4:-27809751 | None:intergenic |
| TCCTTTCAAATCTTTAGGAA+AGG | 0.509600 | 4:+27810080 | MsG0480019817.01.T01:CDS |
| GTAGGGTCTTCTTGAATACC+AGG | 0.510487 | 4:-27808893 | None:intergenic |
| CATGAACTCCATGCGACACT+GGG | 0.512565 | 4:-27808634 | None:intergenic |
| AGTGGAGCTTGTTGCAGGTA+GGG | 0.513407 | 4:+27809921 | MsG0480019817.01.T01:CDS |
| TCCACTGCTCCATTTCCAAA+TGG | 0.515434 | 4:-27809904 | None:intergenic |
| AAGAAACCCTGGCTTTGAAG+AGG | 0.516304 | 4:+27809744 | MsG0480019817.01.T01:CDS |
| GGAGTTCATGCAGTTAGACT+TGG | 0.520919 | 4:+27808647 | MsG0480019817.01.T01:CDS |
| TCAATAATCCAGCCAGGGAG+TGG | 0.521095 | 4:-27809835 | None:intergenic |
| AGGGATTCAATAATCCAGCC+AGG | 0.524844 | 4:-27809841 | None:intergenic |
| CTTCCCAAATGGGAAATCAA+TGG | 0.525918 | 4:+27808563 | MsG0480019817.01.T01:CDS |
| ATAGCTCTTTCTATCATACA+AGG | 0.527718 | 4:+27810166 | MsG0480019817.01.T01:CDS |
| GATAATTTGGTAAGAAACCC+TGG | 0.527834 | 4:+27809733 | MsG0480019817.01.T01:CDS |
| CCCTTTCCTAAAGATTTGAA+AGG | 0.532370 | 4:-27810081 | None:intergenic |
| TCAAGGTCAAACCAGGTCAA+TGG | 0.532647 | 4:+27808696 | MsG0480019817.01.T01:CDS |
| AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4:+27808827 | MsG0480019817.01.T01:CDS |
| GATCTTGTGTCACCACTCCC+TGG | 0.543570 | 4:+27809823 | MsG0480019817.01.T01:CDS |
| AATAGCACAGCATCCAAAAG+TGG | 0.544812 | 4:-27808923 | None:intergenic |
| ACTATAACTTGATCAAGGAC+AGG | 0.546115 | 4:-27810216 | None:intergenic |
| TTACCTCTTGTCGGCATCGG+AGG | 0.550666 | 4:-27808958 | None:intergenic |
| GTTGTGTTGAAAATAGGGAA+TGG | 0.558649 | 4:-27809769 | None:intergenic |
| CTCCATCTCCCAAACCATCA+AGG | 0.560309 | 4:+27808679 | MsG0480019817.01.T01:CDS |
| ACTGGGAAGAACATGCCTCC+AGG | 0.567603 | 4:-27808617 | None:intergenic |
| GTGATACTATAACTTGATCA+AGG | 0.568071 | 4:-27810221 | None:intergenic |
| AGGAAAGGGAACATTCAAAA+CGG | 0.577711 | 4:+27810095 | MsG0480019817.01.T01:CDS |
| CCAAAAGTGGACCACAAGTA+GGG | 0.578033 | 4:-27808910 | None:intergenic |
| TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4:+27808825 | MsG0480019817.01.T01:CDS |
| ACATTACCTTCTGGTGACCT+GGG | 0.583918 | 4:-27807551 | None:intergenic |
| CTAGTAGAATATATCTCTGG+AGG | 0.586760 | 4:+27808587 | MsG0480019817.01.T01:CDS |
| CAAACCATCAAGGTCAAACC+AGG | 0.588869 | 4:+27808689 | MsG0480019817.01.T01:CDS |
| TGTTCTTAGAATTTGTGCAA+TGG | 0.591903 | 4:-27809950 | None:intergenic |
| GATGGAAGAAATGGTTGTCA+TGG | 0.592806 | 4:+27810012 | MsG0480019817.01.T01:CDS |
| CAGTGGAGCTTGTTGCAGGT+AGG | 0.597409 | 4:+27809920 | MsG0480019817.01.T01:CDS |
| AGGCTATAAAGTGTTTGCAA+AGG | 0.598543 | 4:-27808803 | None:intergenic |
| ATGTTCTTCCCAGTGTCGCA+TGG | 0.600308 | 4:+27808626 | MsG0480019817.01.T01:CDS |
| CTTGATGGTTTGGGAGATGG+AGG | 0.600334 | 4:-27808678 | None:intergenic |
| ATTAGAGCATACCATTGACC+TGG | 0.601979 | 4:-27808707 | None:intergenic |
| TATCCTCCGATGCCGACAAG+AGG | 0.603570 | 4:+27808955 | MsG0480019817.01.T01:CDS |
| ATGGACCCTCTTCAAAGCCA+GGG | 0.606005 | 4:-27809750 | None:intergenic |
| AGAAACCCTGGCTTTGAAGA+GGG | 0.606940 | 4:+27809745 | MsG0480019817.01.T01:CDS |
| TCCAAAAGTGGACCACAAGT+AGG | 0.607049 | 4:-27808911 | None:intergenic |
| TATTTGCTAATGTTCATCCC+AGG | 0.608084 | 4:+27807534 | MsG0480019817.01.T01:CDS |
| AAAGTTACCTTCCATAACCC+TGG | 0.610532 | 4:+27808875 | MsG0480019817.01.T01:CDS |
| TTGAATACCAGGGTTATGGA+AGG | 0.611751 | 4:-27808882 | None:intergenic |
| GCCATTTGGAAATGGAGCAG+TGG | 0.618905 | 4:+27809903 | MsG0480019817.01.T01:CDS |
| AAGCAATAACATCACCATTG+AGG | 0.621145 | 4:-27808823 | None:intergenic |
| TGGTTGTCATGGATCAATGA+TGG | 0.622229 | 4:+27810023 | MsG0480019817.01.T01:CDS |
| AATTATCTGCAAAGAGACCA+TGG | 0.626521 | 4:-27809717 | None:intergenic |
| AAAGGAACATCACCAGATTG+TGG | 0.644013 | 4:-27808785 | None:intergenic |
| CTATAACTTGATCAAGGACA+GGG | 0.647070 | 4:-27810215 | None:intergenic |
| GTTCATCCCAGGTCACCAGA+AGG | 0.652959 | 4:+27807545 | MsG0480019817.01.T01:CDS |
| GGGATTCAATAATCCAGCCA+GGG | 0.660484 | 4:-27809840 | None:intergenic |
| TAGTAGAATATATCTCTGGA+GGG | 0.660581 | 4:+27808588 | MsG0480019817.01.T01:CDS |
| ATTCAAGAAGACCCTACTTG+TGG | 0.663898 | 4:+27808899 | MsG0480019817.01.T01:CDS |
| TAGGGTCTTCTTGAATACCA+GGG | 0.668985 | 4:-27808892 | None:intergenic |
| AGAATCCAGACAAATGGACA+TGG | 0.682561 | 4:-27808985 | None:intergenic |
| TCTGGAGGGCCACAACCTGG+AGG | 0.701197 | 4:+27808602 | MsG0480019817.01.T01:CDS |
| GGAACATCACCAGATTGTGG+AGG | 0.701281 | 4:-27808782 | None:intergenic |
| TGCTTGATAAGACTATACCA+TGG | 0.724642 | 4:+27809700 | MsG0480019817.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAATAATAAATAGTTA+AGG | + | Chr4:27809400-27809419 | MsG0480019817.01.T01:intron | 10.0% |
| !!! | ATTCAGTTATTTTTTTTTTT+AGG | - | Chr4:27809495-27809514 | None:intergenic | 10.0% |
| !!! | TAAATACTTTTCTTTTTTAA+TGG | - | Chr4:27809667-27809686 | None:intergenic | 10.0% |
| !!! | TATTTTTTTCAAATTACTAT+TGG | + | Chr4:27807817-27807836 | MsG0480019817.01.T01:intron | 10.0% |
| !!! | TTCAGTTATTTTTTTTTTTA+GGG | - | Chr4:27809494-27809513 | None:intergenic | 10.0% |
| !! | GTTATGTACAAAAAATATAT+TGG | - | Chr4:27808417-27808436 | None:intergenic | 15.0% |
| !!! | AAATAACCTATTTACTTTTT+AGG | + | Chr4:27809574-27809593 | MsG0480019817.01.T01:intron | 15.0% |
| !!! | AAGAAAAGTATTTATTGTTA+AGG | + | Chr4:27809673-27809692 | MsG0480019817.01.T01:intron | 15.0% |
| !! | CTTTGAATCAATGAATTTAA+TGG | - | Chr4:27809872-27809891 | None:intergenic | 20.0% |
| !! | GTACAAAAAATATATTGGAA+AGG | - | Chr4:27808412-27808431 | None:intergenic | 20.0% |
| !! | TACAATATGAAATTCACAAT+TGG | + | Chr4:27809988-27810007 | MsG0480019817.01.T01:CDS | 20.0% |
| !! | TTAAAGTTTACTTCCAAAAT+GGG | + | Chr4:27808477-27808496 | MsG0480019817.01.T01:intron | 20.0% |
| !!! | AAAGTTAATTCAGGTTTAAA+AGG | - | Chr4:27809471-27809490 | None:intergenic | 20.0% |
| !!! | ATTTTGGAAGTAAACTTTAA+GGG | - | Chr4:27808477-27808496 | None:intergenic | 20.0% |
| !!! | TTAAGCACTTAATTTTCAAA+AGG | - | Chr4:27809529-27809548 | None:intergenic | 20.0% |
| ! | AAAATCGCAATCAAAATCAA+TGG | - | Chr4:27808147-27808166 | None:intergenic | 25.0% |
| ! | AAAGTTCCTTTCAAATCTTT+AGG | + | Chr4:27810075-27810094 | MsG0480019817.01.T01:CDS | 25.0% |
| ! | AATGTCTTGAATATTATGCT+TGG | - | Chr4:27808386-27808405 | None:intergenic | 25.0% |
| ! | CTTAAAGTTTACTTCCAAAA+TGG | + | Chr4:27808476-27808495 | MsG0480019817.01.T01:intron | 25.0% |
| ! | GATCAGAAATTCAGAATATA+AGG | - | Chr4:27808439-27808458 | None:intergenic | 25.0% |
| ! | TACCAGTAACAAATATGAAT+TGG | - | Chr4:27807592-27807611 | None:intergenic | 25.0% |
| ! | TGACTTCCTAAAAAGTAAAT+AGG | - | Chr4:27809583-27809602 | None:intergenic | 25.0% |
| ! | TTAAGGGAAAAACAAAAACA+GGG | - | Chr4:27808461-27808480 | None:intergenic | 25.0% |
| ! | TTCATATTGTAGACTTTGTT+TGG | - | Chr4:27809979-27809998 | None:intergenic | 25.0% |
| ! | TTGTAAGTTTAGCAAAATCA+TGG | + | Chr4:27807909-27807928 | MsG0480019817.01.T01:intron | 25.0% |
| ! | TTGTTTCCTTTATGAATCTT+GGG | - | Chr4:27808523-27808542 | None:intergenic | 25.0% |
| ! | TTTAAGGGAAAAACAAAAAC+AGG | - | Chr4:27808462-27808481 | None:intergenic | 25.0% |
| !!! | AATGAATTTAATGGCTTTGA+GGG | - | Chr4:27809863-27809882 | None:intergenic | 25.0% |
| !!! | CATTTGTTGTGTTGAAAATA+GGG | - | Chr4:27809777-27809796 | None:intergenic | 25.0% |
| !!! | CATTTTGGAAGTAAACTTTA+AGG | - | Chr4:27808478-27808497 | None:intergenic | 25.0% |
| !!! | CTGAATTTTAGGATTTAAGT+CGG | - | Chr4:27807957-27807976 | None:intergenic | 25.0% |
| !!! | TAATGTTGATTTGTTGTGAT+TGG | + | Chr4:27809057-27809076 | MsG0480019817.01.T01:intron | 25.0% |
| !!! | TTTTTAGGGAAAGTTAATTC+AGG | - | Chr4:27809480-27809499 | None:intergenic | 25.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | Chr4:27808212-27808231 | None:intergenic | 30.0% | |
| ACAAAATTATGTTACCACCA+AGG | - | Chr4:27808292-27808311 | None:intergenic | 30.0% | |
| ACTCATTCACTTGTATCTTA+AGG | + | Chr4:27809359-27809378 | MsG0480019817.01.T01:intron | 30.0% | |
| AGGACAAGCATAATCTAAAA+CGG | - | Chr4:27809126-27809145 | None:intergenic | 30.0% | |
| ATAAAGGAAACAAGACTCAT+TGG | + | Chr4:27808530-27808549 | MsG0480019817.01.T01:CDS | 30.0% | |
| ATAGCTCTTTCTATCATACA+AGG | + | Chr4:27810166-27810185 | MsG0480019817.01.T01:CDS | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | + | Chr4:27809994-27810013 | MsG0480019817.01.T01:CDS | 30.0% | |
| CAATGGTATGCTCTAATATT+AGG | + | Chr4:27808713-27808732 | MsG0480019817.01.T01:CDS | 30.0% | |
| CAATGTAATCAGATTTGTGA+CGG | - | Chr4:27807789-27807808 | None:intergenic | 30.0% | |
| CGACTTAAATCCTAAAATTC+AGG | + | Chr4:27807955-27807974 | MsG0480019817.01.T01:intron | 30.0% | |
| CTCATTCACTTGTATCTTAA+GGG | + | Chr4:27809360-27809379 | MsG0480019817.01.T01:intron | 30.0% | |
| CTTGAATATTATGCTTGGAT+TGG | - | Chr4:27808381-27808400 | None:intergenic | 30.0% | |
| CTTGTTTCCTTTATGAATCT+TGG | - | Chr4:27808524-27808543 | None:intergenic | 30.0% | |
| GTGATACTATAACTTGATCA+AGG | - | Chr4:27810224-27810243 | None:intergenic | 30.0% | |
| TAAAGGAAACAAGACTCATT+GGG | + | Chr4:27808531-27808550 | MsG0480019817.01.T01:CDS | 30.0% | |
| TAAGTTTAGCAAAATCATGG+TGG | + | Chr4:27807912-27807931 | MsG0480019817.01.T01:intron | 30.0% | |
| TAGTAGAATATATCTCTGGA+GGG | + | Chr4:27808588-27808607 | MsG0480019817.01.T01:CDS | 30.0% | |
| TGAAACAATTACTGATGTAG+AGG | - | Chr4:27809146-27809165 | None:intergenic | 30.0% | |
| TGTTCTTAGAATTTGTGCAA+TGG | - | Chr4:27809953-27809972 | None:intergenic | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+AGG | - | Chr4:27808199-27808218 | None:intergenic | 30.0% |
| ! | AGTTTTTGCCAAAATGATAG+TGG | + | Chr4:27808328-27808347 | MsG0480019817.01.T01:intron | 30.0% |
| ! | CAATGAATTTAATGGCTTTG+AGG | - | Chr4:27809864-27809883 | None:intergenic | 30.0% |
| ! | CCTATTTTCAACACAACAAA+TGG | + | Chr4:27809775-27809794 | MsG0480019817.01.T01:CDS | 30.0% |
| ! | CCTTTCAAATCTTTAGGAAA+GGG | + | Chr4:27810081-27810100 | MsG0480019817.01.T01:CDS | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | - | Chr4:27808177-27808196 | None:intergenic | 30.0% |
| ! | TCCTTTCAAATCTTTAGGAA+AGG | + | Chr4:27810080-27810099 | MsG0480019817.01.T01:CDS | 30.0% |
| ! | TGCCAATTCATATTTGTTAC+TGG | + | Chr4:27807587-27807606 | MsG0480019817.01.T01:intron | 30.0% |
| !! | ACAAGTTGATTTGTTGAGAT+TGG | - | Chr4:27809034-27809053 | None:intergenic | 30.0% |
| !! | CATACAAGGATTGATGATTT+TGG | + | Chr4:27810180-27810199 | MsG0480019817.01.T01:CDS | 30.0% |
| !! | CCATTTGTTGTGTTGAAAAT+AGG | - | Chr4:27809778-27809797 | None:intergenic | 30.0% |
| AACTTTACTTCAGGTCGAAA+GGG | - | Chr4:27808256-27808275 | None:intergenic | 35.0% | |
| AAGCAATAACATCACCATTG+AGG | - | Chr4:27808826-27808845 | None:intergenic | 35.0% | |
| AATTATCTGCAAAGAGACCA+TGG | - | Chr4:27809720-27809739 | None:intergenic | 35.0% | |
| ACAATTGGAGATGGAAGAAA+TGG | + | Chr4:27810003-27810022 | MsG0480019817.01.T01:CDS | 35.0% | |
| ACACTTCATATCAGACATGT+CGG | + | Chr4:27807743-27807762 | MsG0480019817.01.T01:intron | 35.0% | |
| ACTATAACTTGATCAAGGAC+AGG | - | Chr4:27810219-27810238 | None:intergenic | 35.0% | |
| AGGAAAGGGAACATTCAAAA+CGG | + | Chr4:27810095-27810114 | MsG0480019817.01.T01:CDS | 35.0% | |
| CAAAATCGGAACTTTACTTC+AGG | - | Chr4:27808265-27808284 | None:intergenic | 35.0% | |
| CAAACACTTTATAGCCTCAA+TGG | + | Chr4:27808809-27808828 | MsG0480019817.01.T01:CDS | 35.0% | |
| CCCTTTCCTAAAGATTTGAA+AGG | - | Chr4:27810084-27810103 | None:intergenic | 35.0% | |
| CGTAAAATCGCATTCTACTA+TGG | - | Chr4:27808015-27808034 | None:intergenic | 35.0% | |
| CTAGTAGAATATATCTCTGG+AGG | + | Chr4:27808587-27808606 | MsG0480019817.01.T01:CDS | 35.0% | |
| CTATAACTTGATCAAGGACA+GGG | - | Chr4:27810218-27810237 | None:intergenic | 35.0% | |
| CTATGGATTTAAGTCGTTGA+AGG | - | Chr4:27807998-27808017 | None:intergenic | 35.0% | |
| CTCTAATATTAGGAGCTTCT+AGG | + | Chr4:27808723-27808742 | MsG0480019817.01.T01:CDS | 35.0% | |
| GATAATTTGGTAAGAAACCC+TGG | + | Chr4:27809733-27809752 | MsG0480019817.01.T01:CDS | 35.0% | |
| GGTCTAGTAGAATATATCTC+TGG | + | Chr4:27808584-27808603 | MsG0480019817.01.T01:CDS | 35.0% | |
| GTTGTGTTGAAAATAGGGAA+TGG | - | Chr4:27809772-27809791 | None:intergenic | 35.0% | |
| TAGAGTTGAACATTACCTTC+TGG | - | Chr4:27807563-27807582 | None:intergenic | 35.0% | |
| TCCTTTATGAATCTTGGGTT+TGG | - | Chr4:27808518-27808537 | None:intergenic | 35.0% | |
| TCGAAAGGGAATAGCAAAAT+CGG | - | Chr4:27808242-27808261 | None:intergenic | 35.0% | |
| TGCTTGATAAGACTATACCA+TGG | + | Chr4:27809700-27809719 | MsG0480019817.01.T01:intron | 35.0% | |
| TGGTCTCTTTGCAGATAATT+TGG | + | Chr4:27809720-27809739 | MsG0480019817.01.T01:CDS | 35.0% | |
| ! | AAGAATTTCCAAGTGCCATT+TGG | + | Chr4:27809889-27809908 | MsG0480019817.01.T01:CDS | 35.0% |
| ! | AATGGTGATGTTATTGCTTG+GGG | + | Chr4:27808827-27808846 | MsG0480019817.01.T01:CDS | 35.0% |
| ! | ACAGTGAACCACTATCATTT+TGG | - | Chr4:27808339-27808358 | None:intergenic | 35.0% |
| ! | AGGCTATAAAGTGTTTGCAA+AGG | - | Chr4:27808806-27808825 | None:intergenic | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | + | Chr4:27808826-27808845 | MsG0480019817.01.T01:CDS | 35.0% |
| ! | GAATATTATGCTTGGATTGG+AGG | - | Chr4:27808378-27808397 | None:intergenic | 35.0% |
| ! | GATGATTTTGGATCTATGTG+TGG | + | Chr4:27810192-27810211 | MsG0480019817.01.T01:CDS | 35.0% |
| ! | GTCGCAAAATCCTGAATTTT+AGG | - | Chr4:27807968-27807987 | None:intergenic | 35.0% |
| ! | TATTTGCTAATGTTCATCCC+AGG | + | Chr4:27807534-27807553 | MsG0480019817.01.T01:CDS | 35.0% |
| ! | TCAATGGTGATGTTATTGCT+TGG | + | Chr4:27808825-27808844 | MsG0480019817.01.T01:CDS | 35.0% |
| ! | TCTCTTCAAAGTTCCCATTT+TGG | - | Chr4:27808493-27808512 | None:intergenic | 35.0% |
| !! | AAGTCGGATTTTGACAACAA+TGG | - | Chr4:27807941-27807960 | None:intergenic | 35.0% |
| !! | AGACCATTGATTTCCCATTT+GGG | - | Chr4:27808569-27808588 | None:intergenic | 35.0% |
| !! | TAGACCATTGATTTCCCATT+TGG | - | Chr4:27808570-27808589 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGATTG+TGG | - | Chr4:27808788-27808807 | None:intergenic | 40.0% | |
| AAAGTTACCTTCCATAACCC+TGG | + | Chr4:27808875-27808894 | MsG0480019817.01.T01:CDS | 40.0% | |
| AATAGCACAGCATCCAAAAG+TGG | - | Chr4:27808926-27808945 | None:intergenic | 40.0% | |
| ACCACCAAGGTTGTCAAAAT+CGG | - | Chr4:27808279-27808298 | None:intergenic | 40.0% | |
| AGAATCCAGACAAATGGACA+TGG | - | Chr4:27808988-27809007 | None:intergenic | 40.0% | |
| ATGAACCATGTCCATTTGTC+TGG | + | Chr4:27808980-27808999 | MsG0480019817.01.T01:CDS | 40.0% | |
| ATTAGAGCATACCATTGACC+TGG | - | Chr4:27808710-27808729 | None:intergenic | 40.0% | |
| ATTCAAGAAGACCCTACTTG+TGG | + | Chr4:27808899-27808918 | MsG0480019817.01.T01:CDS | 40.0% | |
| CATGGTTCATTACCTCTTGT+CGG | - | Chr4:27808970-27808989 | None:intergenic | 40.0% | |
| CGAAAGGGAATAGCAAAATC+GGG | - | Chr4:27808241-27808260 | None:intergenic | 40.0% | |
| CTTCCCAAATGGGAAATCAA+TGG | + | Chr4:27808563-27808582 | MsG0480019817.01.T01:CDS | 40.0% | |
| CTTCTTGAATACCAGGGTTA+TGG | - | Chr4:27808889-27808908 | None:intergenic | 40.0% | |
| GAAACATGCTCTTCCCAAAT+GGG | + | Chr4:27808553-27808572 | MsG0480019817.01.T01:CDS | 40.0% | |
| GAACTTTACTTCAGGTCGAA+AGG | - | Chr4:27808257-27808276 | None:intergenic | 40.0% | |
| GATGGAAGAAATGGTTGTCA+TGG | + | Chr4:27810012-27810031 | MsG0480019817.01.T01:CDS | 40.0% | |
| GCCAAACCCAAGATTCATAA+AGG | + | Chr4:27808514-27808533 | MsG0480019817.01.T01:CDS | 40.0% | |
| GTTGCTTAACATGTGTCCTA+AGG | - | Chr4:27809239-27809258 | None:intergenic | 40.0% | |
| TAGGGTCTTCTTGAATACCA+GGG | - | Chr4:27808895-27808914 | None:intergenic | 40.0% | |
| TGGTTGTCATGGATCAATGA+TGG | + | Chr4:27810023-27810042 | MsG0480019817.01.T01:CDS | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | + | Chr4:27808835-27808854 | MsG0480019817.01.T01:CDS | 40.0% | |
| TTGAATACCAGGGTTATGGA+AGG | - | Chr4:27808885-27808904 | None:intergenic | 40.0% | |
| ! | ATGAAGTGTTCGTGCTACAA+AGG | - | Chr4:27807732-27807751 | None:intergenic | 40.0% |
| ! | GACACAAGATCTTGTTGCTT+TGG | - | Chr4:27809814-27809833 | None:intergenic | 40.0% |
| ! | TGGTTTGACCTTGATGGTTT+GGG | - | Chr4:27808690-27808709 | None:intergenic | 40.0% |
| ! | TTACGCTAACTTGTGTCCTT+AGG | + | Chr4:27809220-27809239 | MsG0480019817.01.T01:intron | 40.0% |
| !! | ACAAGATCTTGTTGCTTTGG+AGG | - | Chr4:27809811-27809830 | None:intergenic | 40.0% |
| !! | AGTTCCGATTTTGACAACCT+TGG | + | Chr4:27808272-27808291 | MsG0480019817.01.T01:intron | 40.0% |
| !! | TTCCAAGTGCCATTTGGAAA+TGG | + | Chr4:27809895-27809914 | MsG0480019817.01.T01:CDS | 40.0% |
| AACATTACCTTCTGGTGACC+TGG | - | Chr4:27807555-27807574 | None:intergenic | 45.0% | |
| ACATTACCTTCTGGTGACCT+GGG | - | Chr4:27807554-27807573 | None:intergenic | 45.0% | |
| AGGGATTCAATAATCCAGCC+AGG | - | Chr4:27809844-27809863 | None:intergenic | 45.0% | |
| CAAACCATCAAGGTCAAACC+AGG | + | Chr4:27808689-27808708 | MsG0480019817.01.T01:CDS | 45.0% | |
| CCAAAAGTGGACCACAAGTA+GGG | - | Chr4:27808913-27808932 | None:intergenic | 45.0% | |
| CTCCATTTCCAAATGGCACT+TGG | - | Chr4:27809900-27809919 | None:intergenic | 45.0% | |
| CTGCAGAGAATCCAGACAAA+TGG | - | Chr4:27808994-27809013 | None:intergenic | 45.0% | |
| GATTCTCTGCAGCATGCAAA+AGG | + | Chr4:27809002-27809021 | MsG0480019817.01.T01:CDS | 45.0% | |
| GGAAACATGCTCTTCCCAAA+TGG | + | Chr4:27808552-27808571 | MsG0480019817.01.T01:CDS | 45.0% | |
| GGAGTTCATGCAGTTAGACT+TGG | + | Chr4:27808647-27808666 | MsG0480019817.01.T01:CDS | 45.0% | |
| GGGATTCAATAATCCAGCCA+GGG | - | Chr4:27809843-27809862 | None:intergenic | 45.0% | |
| GTAGGGTCTTCTTGAATACC+AGG | - | Chr4:27808896-27808915 | None:intergenic | 45.0% | |
| TCAAGGTCAAACCAGGTCAA+TGG | + | Chr4:27808696-27808715 | MsG0480019817.01.T01:CDS | 45.0% | |
| TCATTACCTCTTGTCGGCAT+CGG | - | Chr4:27808964-27808983 | None:intergenic | 45.0% | |
| TCCAAAAGTGGACCACAAGT+AGG | - | Chr4:27808914-27808933 | None:intergenic | 45.0% | |
| TCCACTGCTCCATTTCCAAA+TGG | - | Chr4:27809907-27809926 | None:intergenic | 45.0% | |
| ! | CTGGTTTGACCTTGATGGTT+TGG | - | Chr4:27808691-27808710 | None:intergenic | 45.0% |
| ! | TTGACCTGGTTTGACCTTGA+TGG | - | Chr4:27808696-27808715 | None:intergenic | 45.0% |
| !! | AAGAAACCCTGGCTTTGAAG+AGG | + | Chr4:27809744-27809763 | MsG0480019817.01.T01:CDS | 45.0% |
| !! | AGAAACCCTGGCTTTGAAGA+GGG | + | Chr4:27809745-27809764 | MsG0480019817.01.T01:CDS | 45.0% |
| !! | TCCGATTTTGACAACCTTGG+TGG | + | Chr4:27808275-27808294 | MsG0480019817.01.T01:intron | 45.0% |
| !! | AAAAAAGTAAAATAAAATAA+AGG | + | Chr4:27809197-27809216 | MsG0480019817.01.T01:intron | 5.0% |
| !! | ATAAAATAATAAATAGTTAA+GGG | + | Chr4:27809401-27809420 | MsG0480019817.01.T01:intron | 5.0% |
| !!! | CTTAATATATTTTTTAAAAT+TGG | - | Chr4:27809627-27809646 | None:intergenic | 5.0% |
| !!! | TATTTAGTATTATTATTTTT+TGG | + | Chr4:27808115-27808134 | MsG0480019817.01.T01:intron | 5.0% |
| !!! | TTAAGTTTTTTTTTTATTTT+TGG | - | Chr4:27809261-27809280 | None:intergenic | 5.0% |
| AAGAACATGCCTCCAGGTTG+TGG | - | Chr4:27808614-27808633 | None:intergenic | 50.0% | |
| AATGGACCCTCTTCAAAGCC+AGG | - | Chr4:27809754-27809773 | None:intergenic | 50.0% | |
| AGACATGTCAGTGTCGTGTC+TGG | + | Chr4:27807843-27807862 | MsG0480019817.01.T01:intron | 50.0% | |
| ATCTCAGTGCCTCCACAATC+TGG | + | Chr4:27808773-27808792 | MsG0480019817.01.T01:CDS | 50.0% | |
| ATGGACCCTCTTCAAAGCCA+GGG | - | Chr4:27809753-27809772 | None:intergenic | 50.0% | |
| ATGTTCTTCCCAGTGTCGCA+TGG | + | Chr4:27808626-27808645 | MsG0480019817.01.T01:CDS | 50.0% | |
| CATGAACTCCATGCGACACT+GGG | - | Chr4:27808637-27808656 | None:intergenic | 50.0% | |
| CTCCATCTCCCAAACCATCA+AGG | + | Chr4:27808679-27808698 | MsG0480019817.01.T01:CDS | 50.0% | |
| GCCATTTGGAAATGGAGCAG+TGG | + | Chr4:27809903-27809922 | MsG0480019817.01.T01:CDS | 50.0% | |
| GGAACATCACCAGATTGTGG+AGG | - | Chr4:27808785-27808804 | None:intergenic | 50.0% | |
| TCAATAATCCAGCCAGGGAG+TGG | - | Chr4:27809838-27809857 | None:intergenic | 50.0% | |
| ! | CCCTACTTGTGGTCCACTTT+TGG | + | Chr4:27808910-27808929 | MsG0480019817.01.T01:CDS | 50.0% |
| ! | CTTGATGGTTTGGGAGATGG+AGG | - | Chr4:27808681-27808700 | None:intergenic | 50.0% |
| ! | GACCTTGATGGTTTGGGAGA+TGG | - | Chr4:27808684-27808703 | None:intergenic | 50.0% |
| !! | AGTGGAGCTTGTTGCAGGTA+GGG | + | Chr4:27809921-27809940 | MsG0480019817.01.T01:CDS | 50.0% |
| ACTGGGAAGAACATGCCTCC+AGG | - | Chr4:27808620-27808639 | None:intergenic | 55.0% | |
| GATCTTGTGTCACCACTCCC+TGG | + | Chr4:27809823-27809842 | MsG0480019817.01.T01:CDS | 55.0% | |
| GCATGAACTCCATGCGACAC+TGG | - | Chr4:27808638-27808657 | None:intergenic | 55.0% | |
| GTTCATCCCAGGTCACCAGA+AGG | + | Chr4:27807545-27807564 | MsG0480019817.01.T01:CDS | 55.0% | |
| TATCCTCCGATGCCGACAAG+AGG | + | Chr4:27808955-27808974 | MsG0480019817.01.T01:CDS | 55.0% | |
| ! | TTACCTCTTGTCGGCATCGG+AGG | - | Chr4:27808961-27808980 | None:intergenic | 55.0% |
| !! | CAGTGGAGCTTGTTGCAGGT+AGG | + | Chr4:27809920-27809939 | MsG0480019817.01.T01:CDS | 55.0% |
| TTGTGTCACCACTCCCTGGC+TGG | + | Chr4:27809827-27809846 | MsG0480019817.01.T01:CDS | 60.0% | |
| ! | ATCTCTGGAGGGCCACAACC+TGG | + | Chr4:27808599-27808618 | MsG0480019817.01.T01:CDS | 60.0% |
| !! | GGAGCAGTGGAGCTTGTTGC+AGG | + | Chr4:27809916-27809935 | MsG0480019817.01.T01:CDS | 60.0% |
| TCTGGAGGGCCACAACCTGG+AGG | + | Chr4:27808602-27808621 | MsG0480019817.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 27807470 | 27810254 | 27807470 | ID=MsG0480019817.01;Name=MsG0480019817.01 |
| Chr4 | mRNA | 27807470 | 27810254 | 27807470 | ID=MsG0480019817.01.T01;Parent=MsG0480019817.01;Name=MsG0480019817.01.T01;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|393 |
| Chr4 | exon | 27807470 | 27807566 | 27807470 | ID=MsG0480019817.01.T01:exon:16478;Parent=MsG0480019817.01.T01 |
| Chr4 | exon | 27808483 | 27809023 | 27808483 | ID=MsG0480019817.01.T01:exon:16479;Parent=MsG0480019817.01.T01 |
| Chr4 | exon | 27809711 | 27810254 | 27809711 | ID=MsG0480019817.01.T01:exon:16480;Parent=MsG0480019817.01.T01 |
| Chr4 | CDS | 27807470 | 27807566 | 27807470 | ID=MsG0480019817.01.T01:cds;Parent=MsG0480019817.01.T01 |
| Chr4 | CDS | 27808483 | 27809023 | 27808483 | ID=MsG0480019817.01.T01:cds;Parent=MsG0480019817.01.T01 |
| Chr4 | CDS | 27809711 | 27810254 | 27809711 | ID=MsG0480019817.01.T01:cds;Parent=MsG0480019817.01.T01 |
| Gene Sequence |
| Protein sequence |
