Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011531.01.T01 | ACJ86007.1 | 77.011 | 87 | 15 | 3 | 1 | 85 | 1 | 84 | 2.58E-34 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011531.01.T01 | G7J0A0 | 77.011 | 87 | 15 | 3 | 1 | 85 | 1 | 84 | 5.01e-34 | 124 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048982.01 | MsG0380011531.01 | 0.838054 | 3.611372e-57 | 4.780888e-54 |
| MsG0180000091.01 | MsG0380011531.01 | 0.830635 | 2.627574e-55 | 2.784415e-52 |
| MsG0180000114.01 | MsG0380011531.01 | 0.841069 | 5.941814e-58 | 8.629721e-55 |
| MsG0180000271.01 | MsG0380011531.01 | 0.824735 | 6.870077e-54 | 6.138091e-51 |
| MsG0180000787.01 | MsG0380011531.01 | 0.807008 | 6.233255e-50 | 3.433232e-47 |
| MsG0180000982.01 | MsG0380011531.01 | 0.800528 | 1.381313e-48 | 6.446415e-46 |
| MsG0180001663.01 | MsG0380011531.01 | 0.830533 | 2.783256e-55 | 2.940393e-52 |
| MsG0180002709.01 | MsG0380011531.01 | 0.804051 | 2.600322e-49 | 1.327504e-46 |
| MsG0180002955.01 | MsG0380011531.01 | 0.819225 | 1.298800e-52 | 9.935329e-50 |
| MsG0180003357.01 | MsG0380011531.01 | 0.801161 | 1.026118e-48 | 4.866333e-46 |
| MsG0180003673.01 | MsG0380011531.01 | 0.809275 | 2.050412e-50 | 1.198652e-47 |
| MsG0180004385.01 | MsG0380011531.01 | 0.804227 | 2.389668e-49 | 1.225414e-46 |
| MsG0180004486.01 | MsG0380011531.01 | 0.806935 | 6.458826e-50 | 3.550751e-47 |
| MsG0180004599.01 | MsG0380011531.01 | 0.819008 | 1.455340e-52 | 1.106780e-49 |
| MsG0180004765.01 | MsG0380011531.01 | 0.803907 | 2.786354e-49 | 1.417258e-46 |
| MsG0180004996.01 | MsG0380011531.01 | 0.839956 | 1.161941e-57 | 1.630650e-54 |
| MsG0180005160.01 | MsG0380011531.01 | 0.829247 | 5.728916e-55 | 5.831128e-52 |
| MsG0180005730.01 | MsG0380011531.01 | 0.810488 | 1.124172e-50 | 6.785391e-48 |
| MsG0180005787.01 | MsG0380011531.01 | 0.822254 | 2.613525e-53 | 2.176065e-50 |
| MsG0180005960.01 | MsG0380011531.01 | 0.839029 | 2.023169e-57 | 2.759039e-54 |
| MsG0180005990.01 | MsG0380011531.01 | 0.858016 | 1.100046e-62 | 2.768224e-59 |
| MsG0180006050.01 | MsG0380011531.01 | 0.809799 | 1.582435e-50 | 9.380647e-48 |
| MsG0180006096.01 | MsG0380011531.01 | 0.809628 | 1.722828e-50 | 1.016712e-47 |
| MsG0180006138.01 | MsG0380011531.01 | 0.808297 | 3.318797e-50 | 1.890642e-47 |
| MsG0180006251.01 | MsG0380011531.01 | 0.814943 | 1.190801e-51 | 8.099505e-49 |
| MsG0280010595.01 | MsG0380011531.01 | 0.822365 | 2.463198e-53 | 2.057568e-50 |
| MsG0280010599.01 | MsG0380011531.01 | 0.824530 | 7.677676e-54 | 6.818966e-51 |
| MsG0280010712.01 | MsG0380011531.01 | 0.842207 | 2.977281e-58 | 4.481200e-55 |
| MsG0280010722.01 | MsG0380011531.01 | 0.813590 | 2.369605e-51 | 1.553887e-48 |
| MsG0280011201.01 | MsG0380011531.01 | 0.817577 | 3.067852e-52 | 2.242664e-49 |
| MsG0280011376.01 | MsG0380011531.01 | 0.816404 | 5.627663e-52 | 3.983910e-49 |
| MsG0380011531.01 | MsG0380011537.01 | 0.843939 | 1.028872e-58 | 1.635465e-55 |
| MsG0380011531.01 | MsG0380011581.01 | 0.808416 | 3.130036e-50 | 1.788686e-47 |
| MsG0380011531.01 | MsG0380011895.01 | 0.840324 | 9.315461e-58 | 1.322110e-54 |
| MsG0380011531.01 | MsG0380012005.01 | 0.801887 | 7.281928e-49 | 3.517527e-46 |
| MsG0380011531.01 | MsG0380012161.01 | 0.823314 | 1.480432e-53 | 1.270230e-50 |
| MsG0380011531.01 | MsG0380013853.01 | 0.819470 | 1.142226e-52 | 8.797961e-50 |
| MsG0380011531.01 | MsG0380014248.01 | 0.802632 | 5.117087e-49 | 2.519000e-46 |
| MsG0380011531.01 | MsG0380014706.01 | 0.814725 | 1.331099e-51 | 9.001083e-49 |
| MsG0380011531.01 | MsG0380014727.01 | 0.831737 | 1.409169e-55 | 1.542973e-52 |
| MsG0380011531.01 | MsG0380014866.01 | 0.824714 | 6.950371e-54 | 6.206282e-51 |
| MsG0380011531.01 | MsG0380015166.01 | 0.811948 | 5.421620e-51 | 3.401776e-48 |
| MsG0380011531.01 | MsG0380015930.01 | 0.836949 | 6.930886e-57 | 8.870152e-54 |
| MsG0380011531.01 | MsG0380016064.01 | 0.807535 | 4.820158e-50 | 2.691537e-47 |
| MsG0380011531.01 | MsG0380016133.01 | 0.825919 | 3.604545e-54 | 3.330939e-51 |
| MsG0380011531.01 | MsG0380016182.01 | 0.821882 | 3.187267e-53 | 2.625880e-50 |
| MsG0380011531.01 | MsG0380016209.01 | 0.807607 | 4.654829e-50 | 2.603947e-47 |
| MsG0380011531.01 | MsG0380016391.01 | 0.809345 | 1.981460e-50 | 1.160521e-47 |
| MsG0380011531.01 | MsG0380016624.01 | 0.805843 | 1.097696e-49 | 5.868252e-47 |
| MsG0380011531.01 | MsG0380016740.01 | 0.838185 | 3.341622e-57 | 4.441025e-54 |
| MsG0380011531.01 | MsG0380017048.01 | 0.800716 | 1.264805e-48 | 5.930742e-46 |
| MsG0380011531.01 | MsG0380017085.01 | 0.840148 | 1.034960e-57 | 1.461152e-54 |
| MsG0380011531.01 | MsG0380017126.01 | 0.855548 | 5.860319e-62 | 1.357887e-58 |
| MsG0380011531.01 | MsG0380017452.01 | 0.814588 | 1.427437e-51 | 9.616852e-49 |
| MsG0380011531.01 | MsG0480018236.01 | 0.806500 | 7.983494e-50 | 4.340009e-47 |
| MsG0380011531.01 | MsG0480018318.01 | 0.825039 | 5.825686e-54 | 5.250338e-51 |
| MsG0380011531.01 | MsG0480018321.01 | 0.811163 | 8.030877e-51 | 4.935139e-48 |
| MsG0380011531.01 | MsG0480018402.01 | 0.838884 | 2.205599e-57 | 2.994583e-54 |
| MsG0380011531.01 | MsG0480018473.01 | 0.816906 | 4.343255e-52 | 3.117219e-49 |
| MsG0380011531.01 | MsG0480018847.01 | 0.834772 | 2.469687e-56 | 2.960071e-53 |
| MsG0380011531.01 | MsG0480018995.01 | 0.802210 | 6.250278e-49 | 3.043922e-46 |
| MsG0380011531.01 | MsG0480019035.01 | 0.809394 | 1.933620e-50 | 1.133981e-47 |
| MsG0380011531.01 | MsG0480019435.01 | 0.800330 | 1.516129e-48 | 7.040404e-46 |
| MsG0380011531.01 | MsG0480019562.01 | 0.806191 | 9.273236e-50 | 5.001794e-47 |
| MsG0380011531.01 | MsG0480020024.01 | 0.812056 | 5.135789e-51 | 3.231795e-48 |
| MsG0380011531.01 | MsG0480021041.01 | 0.813156 | 2.952216e-51 | 1.913013e-48 |
| MsG0380011531.01 | MsG0480021240.01 | 0.810191 | 1.303112e-50 | 7.803670e-48 |
| MsG0380011531.01 | MsG0480021280.01 | 0.813995 | 1.929823e-51 | 1.279400e-48 |
| MsG0380011531.01 | MsG0480021805.01 | 0.807198 | 5.681887e-50 | 3.145071e-47 |
| MsG0380011531.01 | MsG0480021869.01 | 0.802837 | 4.641411e-49 | 2.296976e-46 |
| MsG0380011531.01 | MsG0480021917.01 | 0.805153 | 1.531793e-49 | 8.044908e-47 |
| MsG0380011531.01 | MsG0480021927.01 | 0.813518 | 2.457737e-51 | 1.608545e-48 |
| MsG0380011531.01 | MsG0480022827.01 | 0.804077 | 2.568055e-49 | 1.311925e-46 |
| MsG0380011531.01 | MsG0480022916.01 | 0.817791 | 2.746010e-52 | 2.019251e-49 |
| MsG0380011531.01 | MsG0480022933.01 | 0.804746 | 1.862724e-49 | 9.681695e-47 |
| MsG0380011531.01 | MsG0480023270.01 | 0.819071 | 1.407941e-52 | 1.072467e-49 |
| MsG0380011531.01 | MsG0480023638.01 | 0.834837 | 2.378579e-56 | 2.856695e-53 |
| MsG0380011531.01 | MsG0580024160.01 | 0.802704 | 4.945509e-49 | 2.439044e-46 |
| MsG0380011531.01 | MsG0580024862.01 | 0.822126 | 2.799140e-53 | 2.322062e-50 |
| MsG0380011531.01 | MsG0580025758.01 | 0.808986 | 2.365372e-50 | 1.372049e-47 |
| MsG0380011531.01 | MsG0580028988.01 | 0.802217 | 6.228683e-49 | 3.033961e-46 |
| MsG0380011531.01 | MsG0580029647.01 | 0.806587 | 7.650861e-50 | 4.168425e-47 |
| MsG0380011531.01 | MsG0580029879.01 | 0.838340 | 3.048205e-57 | 4.070345e-54 |
| MsG0380011531.01 | MsG0680030415.01 | 0.830347 | 3.090422e-55 | 3.247550e-52 |
| MsG0380011531.01 | MsG0680030992.01 | 0.806197 | 9.246966e-50 | 4.988356e-47 |
| MsG0380011531.01 | MsG0680031334.01 | 0.819306 | 1.244743e-52 | 9.542662e-50 |
| MsG0380011531.01 | MsG0680031377.01 | -0.817485 | 3.218946e-52 | 2.347248e-49 |
| MsG0380011531.01 | MsG0680031815.01 | 0.825504 | 4.521761e-54 | 4.129119e-51 |
| MsG0380011531.01 | MsG0680032058.01 | 0.810984 | 8.780545e-51 | 5.371214e-48 |
| MsG0380011531.01 | MsG0680034235.01 | 0.816838 | 4.497591e-52 | 3.222063e-49 |
| MsG0380011531.01 | MsG0680035844.01 | 0.813234 | 2.837979e-51 | 1.842904e-48 |
| MsG0380011531.01 | MsG0780035957.01 | 0.838186 | 3.339127e-57 | 4.437884e-54 |
| MsG0380011531.01 | MsG0780036117.01 | 0.841935 | 3.514346e-58 | 5.244572e-55 |
| MsG0380011531.01 | MsG0780036183.01 | 0.842107 | 3.164409e-58 | 4.748439e-55 |
| MsG0380011531.01 | MsG0780036288.01 | 0.831360 | 1.744710e-55 | 1.888941e-52 |
| MsG0380011531.01 | MsG0780036950.01 | 0.810071 | 1.383041e-50 | 8.256998e-48 |
| MsG0380011531.01 | MsG0780036978.01 | 0.812820 | 3.498045e-51 | 2.246399e-48 |
| MsG0380011531.01 | MsG0780037330.01 | 0.818193 | 2.227771e-52 | 1.656317e-49 |
| MsG0380011531.01 | MsG0780038636.01 | 0.800850 | 1.187794e-48 | 5.588949e-46 |
| MsG0380011531.01 | MsG0780038644.01 | 0.822656 | 2.108045e-53 | 1.775491e-50 |
| MsG0380011531.01 | MsG0780038827.01 | 0.800255 | 1.570148e-48 | 7.277255e-46 |
| MsG0380011531.01 | MsG0780038833.01 | 0.827536 | 1.481649e-54 | 1.434413e-51 |
| MsG0380011531.01 | MsG0780038911.01 | 0.850704 | 1.429562e-60 | 2.824660e-57 |
| MsG0380011531.01 | MsG0780039143.01 | 0.827635 | 1.403341e-54 | 1.362433e-51 |
| MsG0380011531.01 | MsG0780039438.01 | 0.810666 | 1.029012e-50 | 6.240862e-48 |
| MsG0380011531.01 | MsG0780040871.01 | 0.828862 | 7.100515e-55 | 7.144460e-52 |
| MsG0380011531.01 | MsG0780041261.01 | 0.811445 | 6.974913e-51 | 4.318558e-48 |
| MsG0380011531.01 | MsG0780041387.01 | 0.836041 | 1.180224e-56 | 1.469662e-53 |
| MsG0380011531.01 | MsG0780041432.01 | 0.801081 | 1.065176e-48 | 5.041589e-46 |
| MsG0380011531.01 | MsG0780041435.01 | 0.802934 | 4.432166e-49 | 2.198643e-46 |
| MsG0380011531.01 | MsG0880042031.01 | 0.814387 | 1.580904e-51 | 1.059379e-48 |
| MsG0380011531.01 | MsG0880042065.01 | 0.800301 | 1.537179e-48 | 7.132901e-46 |
| MsG0380011531.01 | MsG0880042134.01 | 0.828241 | 1.002683e-54 | 9.909209e-52 |
| MsG0380011531.01 | MsG0880042622.01 | 0.808931 | 2.429610e-50 | 1.407226e-47 |
| MsG0380011531.01 | MsG0880042700.01 | 0.815792 | 7.708075e-52 | 5.366598e-49 |
| MsG0380011531.01 | MsG0880042857.01 | 0.830670 | 2.577137e-55 | 2.733835e-52 |
| MsG0380011531.01 | MsG0880043028.01 | 0.806324 | 8.695072e-50 | 4.705733e-47 |
| MsG0380011531.01 | MsG0880043144.01 | 0.837539 | 4.898523e-57 | 6.382791e-54 |
| MsG0380011531.01 | MsG0880043749.01 | 0.814991 | 1.162097e-51 | 7.914812e-49 |
| MsG0380011531.01 | MsG0880044409.01 | 0.810704 | 1.009963e-50 | 6.131309e-48 |
| MsG0380011531.01 | MsG0880044573.01 | 0.839618 | 1.422819e-57 | 1.975685e-54 |
| MsG0380011531.01 | MsG0880044728.01 | 0.802696 | 4.963299e-49 | 2.447328e-46 |
| MsG0380011531.01 | MsG0880044948.01 | 0.805452 | 1.326089e-49 | 7.018236e-47 |
| MsG0380011531.01 | MsG0880044950.01 | 0.803061 | 4.171736e-49 | 2.076134e-46 |
| MsG0380011531.01 | MsG0880045371.01 | 0.804308 | 2.299073e-49 | 1.181446e-46 |
| MsG0380011531.01 | MsG0880045387.01 | 0.808086 | 3.680245e-50 | 2.084888e-47 |
| MsG0380011531.01 | MsG0880045613.01 | 0.807008 | 6.233798e-50 | 3.433528e-47 |
| MsG0380011531.01 | MsG0880045756.01 | 0.829805 | 4.190357e-55 | 4.335687e-52 |
| MsG0380011531.01 | MsG0880045765.01 | 0.832152 | 1.112518e-55 | 1.232932e-52 |
| MsG0380011531.01 | MsG0880046377.01 | 0.810818 | 9.541014e-51 | 5.809896e-48 |
| MsG0380011531.01 | MsG0880046901.01 | 0.804220 | 2.398387e-49 | 1.229652e-46 |
| MsG0380011531.01 | MsG0880047267.01 | 0.837429 | 5.224606e-57 | 6.784816e-54 |
| MsG0380011531.01 | MsG0880047594.01 | 0.802895 | 4.515263e-49 | 2.237717e-46 |
| MsG0380011531.01 | MsG0880047745.01 | 0.807068 | 6.055846e-50 | 3.340602e-47 |
| MsG0280007023.01 | MsG0380011531.01 | 0.811043 | 8.529334e-51 | 5.225179e-48 |
| MsG0280007496.01 | MsG0380011531.01 | 0.817885 | 2.614425e-52 | 1.927413e-49 |
| MsG0280007547.01 | MsG0380011531.01 | 0.813509 | 2.469230e-51 | 1.615664e-48 |
| MsG0280007775.01 | MsG0380011531.01 | 0.809762 | 1.611615e-50 | 9.544713e-48 |
| MsG0280007948.01 | MsG0380011531.01 | 0.808041 | 3.762958e-50 | 2.129157e-47 |
| MsG0280008112.01 | MsG0380011531.01 | 0.804226 | 2.391111e-49 | 1.226113e-46 |
| MsG0280008113.01 | MsG0380011531.01 | 0.821114 | 4.794843e-53 | 3.865984e-50 |
| MsG0280009054.01 | MsG0380011531.01 | 0.809512 | 1.823895e-50 | 1.072971e-47 |
| MsG0280009350.01 | MsG0380011531.01 | 0.807375 | 5.212834e-50 | 2.898654e-47 |
| MsG0280010158.01 | MsG0380011531.01 | 0.818517 | 1.880677e-52 | 1.410868e-49 |
| MsG0280010349.01 | MsG0380011531.01 | 0.821625 | 3.655834e-53 | 2.989749e-50 |
| MsG0280010517.01 | MsG0380011531.01 | 0.819492 | 1.129174e-52 | 8.702625e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011531.01.T01 | MTR_3g006190 | 77.011 | 87 | 15 | 3 | 1 | 85 | 1 | 84 | 1.27e-37 | 124 |
| MsG0380011531.01.T01 | MTR_4g030060 | 45.122 | 82 | 40 | 3 | 6 | 85 | 1 | 79 | 1.01e-13 | 62.4 |
| MsG0380011531.01.T01 | MTR_4g030060 | 43.902 | 82 | 41 | 3 | 6 | 85 | 1 | 79 | 1.37e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011531.01.T01 | AT1G33490 | 56.322 | 87 | 33 | 3 | 1 | 85 | 1 | 84 | 2.85e-22 | 84.0 |
| MsG0380011531.01.T01 | AT1G33490 | 56.322 | 87 | 33 | 3 | 1 | 85 | 1 | 84 | 6.94e-22 | 84.0 |
| MsG0380011531.01.T01 | AT4G10140 | 50.000 | 86 | 40 | 2 | 1 | 85 | 1 | 84 | 7.53e-20 | 79.0 |
| MsG0380011531.01.T01 | AT1G33490 | 80.000 | 35 | 7 | 0 | 51 | 85 | 8 | 42 | 2.76e-13 | 60.8 |
Find 16 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATGCTCACGAACTTTA+TGG | 0.165738 | 3:-1008673 | MsG0380011531.01.T01:CDS |
| GCATATTACCTCAACTCTAT+TGG | 0.377682 | 3:+1008645 | None:intergenic |
| CTCTTGTTTCCATTCTTCAC+AGG | 0.437303 | 3:-1010465 | MsG0380011531.01.T01:CDS |
| TTACAATAACAAACAAATAG+TGG | 0.443287 | 3:+1010407 | None:intergenic |
| GGAAGATGGCTATTACCAAT+TGG | 0.470067 | 3:-1010510 | MsG0380011531.01.T01:CDS |
| TGAAGAGTACCTGTGAAGAA+TGG | 0.505109 | 3:+1010456 | None:intergenic |
| GGAATGGCTATTGCATTGCT+TGG | 0.517080 | 3:-1008717 | MsG0380011531.01.T01:CDS |
| CACTGTATTCCTCTGCGGAA+TGG | 0.522128 | 3:-1008733 | MsG0380011531.01.T01:CDS |
| TTTGAACGAAGATGGCGAAT+GGG | 0.528659 | 3:-1010531 | None:intergenic |
| GAAGATGGCGAATGGGAAGA+TGG | 0.532129 | 3:-1010524 | None:intergenic |
| CTTTGAACGAAGATGGCGAA+TGG | 0.546126 | 3:-1010532 | None:intergenic |
| AAGTTCGTGAGCATCATAGT+TGG | 0.557950 | 3:+1008678 | None:intergenic |
| TGGCGACGCCAATAGAGTTG+AGG | 0.614691 | 3:-1008653 | MsG0380011531.01.T01:CDS |
| CTGTGAAGAATGGAAACAAG+AGG | 0.624294 | 3:+1010466 | None:intergenic |
| ATGCAATAGCCATTCCGCAG+AGG | 0.697698 | 3:+1008724 | None:intergenic |
| GGTGTCACTGTATTCCTCTG+CGG | 0.703627 | 3:-1008738 | MsG0380011531.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTATATGAT+TGG | - | Chr3:1009822-1009841 | MsG0380011531.01.T01:intron | 10.0% |
| !! | AAAGAAAAAAAAAAACAAAC+TGG | + | Chr3:1009815-1009834 | None:intergenic | 15.0% |
| !!! | AATTTTATTTCTGTAATGAT+TGG | - | Chr3:1008805-1008824 | MsG0380011531.01.T01:intron | 15.0% |
| !! | ATATATATCCAGGAAATTAT+GGG | + | Chr3:1009422-1009441 | None:intergenic | 20.0% |
| !! | ATTGAATTACAGTTATCTTT+AGG | + | Chr3:1009585-1009604 | None:intergenic | 20.0% |
| !! | TTACAATAACAAACAAATAG+TGG | + | Chr3:1008766-1008785 | None:intergenic | 20.0% |
| !! | TTAGATATGAAATGTCTTTA+TGG | - | Chr3:1009521-1009540 | MsG0380011531.01.T01:intron | 20.0% |
| !!! | ATAATCAAAGTCAGTTTTAA+AGG | + | Chr3:1008892-1008911 | None:intergenic | 20.0% |
| !!! | TGATTTTGATATGTTTTGTT+CGG | - | Chr3:1009105-1009124 | MsG0380011531.01.T01:intron | 20.0% |
| !!! | TTAAAGAAACTAATTTTGAG+TGG | + | Chr3:1009323-1009342 | None:intergenic | 20.0% |
| !!! | TTATTTTAGCATATATATCC+AGG | + | Chr3:1009432-1009451 | None:intergenic | 20.0% |
| !!! | TTCTTTGAAAAAAGTGATTT+TGG | - | Chr3:1008966-1008985 | MsG0380011531.01.T01:intron | 20.0% |
| ! | AAGCTAAAGTGATTTATGTT+TGG | + | Chr3:1009261-1009280 | None:intergenic | 25.0% |
| ! | AATTACAACATACCACATAT+AGG | + | Chr3:1009690-1009709 | None:intergenic | 25.0% |
| ! | CATATATATCCAGGAAATTA+TGG | + | Chr3:1009423-1009442 | None:intergenic | 25.0% |
| ! | CTCATGAAATTAAGCTTAAA+AGG | + | Chr3:1009952-1009971 | None:intergenic | 25.0% |
| ! | TATATGGATGTGAAATATGT+CGG | - | Chr3:1010365-1010384 | MsG0380011531.01.T01:intron | 25.0% |
| ! | TCTGCAATATGTTAAATATG+AGG | - | Chr3:1010392-1010411 | MsG0380011531.01.T01:intron | 25.0% |
| ! | TCTTTATATGATTGGACATT+GGG | - | Chr3:1009830-1009849 | MsG0380011531.01.T01:intron | 25.0% |
| ! | TGATATCAAGCATAAATAAG+AGG | + | Chr3:1009472-1009491 | None:intergenic | 25.0% |
| ! | TGGTTAATGATTATGCTAAA+TGG | + | Chr3:1009795-1009814 | None:intergenic | 25.0% |
| ! | TTCTTTATATGATTGGACAT+TGG | - | Chr3:1009829-1009848 | MsG0380011531.01.T01:intron | 25.0% |
| !! | GATTTTTGCACTCAAATTAA+TGG | - | Chr3:1009202-1009221 | MsG0380011531.01.T01:intron | 25.0% |
| !! | TAAAACTGACTTTGATTATG+AGG | - | Chr3:1008893-1008912 | MsG0380011531.01.T01:intron | 25.0% |
| !! | TGTTTGTAAAAGTGTATGTT+TGG | - | Chr3:1009038-1009057 | MsG0380011531.01.T01:intron | 25.0% |
| !! | TTTTTGTTCATGCTATAAGT+GGG | + | Chr3:1009997-1010016 | None:intergenic | 25.0% |
| !!! | AAGTGATTTTGGTATCAAAA+AGG | - | Chr3:1008977-1008996 | MsG0380011531.01.T01:intron | 25.0% |
| !!! | AATTTTGGTTAATCCAAAAG+TGG | + | Chr3:1009066-1009085 | None:intergenic | 25.0% |
| !!! | AGTGATTTTGGTATCAAAAA+GGG | - | Chr3:1008978-1008997 | MsG0380011531.01.T01:intron | 25.0% |
| !!! | ATTTTGCTATGTTTTTTCAG+AGG | - | Chr3:1009606-1009625 | MsG0380011531.01.T01:intron | 25.0% |
| !!! | ATTTTGGTTAATCCAAAAGT+GGG | + | Chr3:1009065-1009084 | None:intergenic | 25.0% |
| AAAAGAGTTGTAACTGTGTA+CGG | - | Chr3:1010245-1010264 | MsG0380011531.01.T01:intron | 30.0% | |
| AACTATACCGTCATTTATGT+AGG | - | Chr3:1009728-1009747 | MsG0380011531.01.T01:intron | 30.0% | |
| ACTTTGATTATGAGGTATAG+GGG | - | Chr3:1008901-1008920 | MsG0380011531.01.T01:intron | 30.0% | |
| AGTGATTTATGTTTGGACTT+TGG | + | Chr3:1009254-1009273 | None:intergenic | 30.0% | |
| ATAAATGACGGTATAGTTCA+AGG | + | Chr3:1009726-1009745 | None:intergenic | 30.0% | |
| GAATCATACAATGTCATAAC+TGG | + | Chr3:1010119-1010138 | None:intergenic | 30.0% | |
| GACTTTGATTATGAGGTATA+GGG | - | Chr3:1008900-1008919 | MsG0380011531.01.T01:intron | 30.0% | |
| GGTTATATGTGATCTGTTTA+TGG | - | Chr3:1008826-1008845 | MsG0380011531.01.T01:intron | 30.0% | |
| TAAGTGAAAGAAAGTAAGTG+CGG | - | Chr3:1010316-1010335 | MsG0380011531.01.T01:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | Chr3:1009856-1009875 | None:intergenic | 30.0% | |
| TGACTTTGATTATGAGGTAT+AGG | - | Chr3:1008899-1008918 | MsG0380011531.01.T01:intron | 30.0% | |
| TGCAAATACTAAACAAGACA+TGG | + | Chr3:1009771-1009790 | None:intergenic | 30.0% | |
| ! | AAATTTTTCTTAGCTGTGGT+TGG | + | Chr3:1010148-1010167 | None:intergenic | 30.0% |
| ! | AAGTTGTGACGTTTTTCTTT+TGG | - | Chr3:1009549-1009568 | MsG0380011531.01.T01:intron | 30.0% |
| ! | ACAGAAATTTTTCTTAGCTG+TGG | + | Chr3:1010152-1010171 | None:intergenic | 30.0% |
| ! | GGATTAACCAAAATTGATTC+TGG | - | Chr3:1009071-1009090 | MsG0380011531.01.T01:intron | 30.0% |
| ! | GTTTTTGTTCATGCTATAAG+TGG | + | Chr3:1009998-1010017 | None:intergenic | 30.0% |
| ! | TTAACCAAAATTGATTCTGG+AGG | - | Chr3:1009074-1009093 | MsG0380011531.01.T01:intron | 30.0% |
| !! | TCACTTTTAGAAGTTCTAAC+AGG | + | Chr3:1009347-1009366 | None:intergenic | 30.0% |
| ACTAAACAAGACATGGTTGT+GGG | + | Chr3:1009764-1009783 | None:intergenic | 35.0% | |
| CACATCCATATATGCTTTCT+CGG | + | Chr3:1010357-1010376 | None:intergenic | 35.0% | |
| CTGCATTCCTACATAAATGA+CGG | + | Chr3:1009738-1009757 | None:intergenic | 35.0% | |
| TACTAAACAAGACATGGTTG+TGG | + | Chr3:1009765-1009784 | None:intergenic | 35.0% | |
| TATGATGCTCACGAACTTTA+TGG | - | Chr3:1010497-1010516 | MsG0380011531.01.T01:CDS | 35.0% | |
| TTAAGCTGTTTGTCCAAACA+GGG | - | Chr3:1010093-1010112 | MsG0380011531.01.T01:intron | 35.0% | |
| ! | GAGGCTAATGTTTTGCAAAT+AGG | - | Chr3:1010411-1010430 | MsG0380011531.01.T01:CDS | 35.0% |
| ! | TGGATTCTATCACTTGTTGA+AGG | - | Chr3:1008846-1008865 | MsG0380011531.01.T01:intron | 35.0% |
| !! | ATAGTTCAAGGTGGGTTAAT+TGG | + | Chr3:1009714-1009733 | None:intergenic | 35.0% |
| !! | TTGGGAGTATTTCCTATATG+TGG | - | Chr3:1009675-1009694 | MsG0380011531.01.T01:intron | 35.0% |
| !!! | GATTTTCTTCTGGAACCAAT+TGG | + | Chr3:1008678-1008697 | None:intergenic | 35.0% |
| AAGTTCGTGAGCATCATAGT+TGG | + | Chr3:1010495-1010514 | None:intergenic | 40.0% | |
| AATGACGGTATAGTTCAAGG+TGG | + | Chr3:1009723-1009742 | None:intergenic | 40.0% | |
| ATGACGGTATAGTTCAAGGT+GGG | + | Chr3:1009722-1009741 | None:intergenic | 40.0% | |
| CAATTGTGCCCATAATTTCC+TGG | - | Chr3:1009411-1009430 | MsG0380011531.01.T01:intron | 40.0% | |
| CTAAACAAGACATGGTTGTG+GGG | + | Chr3:1009763-1009782 | None:intergenic | 40.0% | |
| CTGTGAAGAATGGAAACAAG+AGG | + | Chr3:1008707-1008726 | None:intergenic | 40.0% | |
| GGAAGATGGCTATTACCAAT+TGG | - | Chr3:1008660-1008679 | MsG0380011531.01.T01:CDS | 40.0% | |
| GTGGGTTTCATAAGCTATCT+TGG | + | Chr3:1009979-1009998 | None:intergenic | 40.0% | |
| GTTAAGCTGTTTGTCCAAAC+AGG | - | Chr3:1010092-1010111 | MsG0380011531.01.T01:intron | 40.0% | |
| TTGTTCGGCAAGAGAAGAAT+TGG | - | Chr3:1009120-1009139 | MsG0380011531.01.T01:intron | 40.0% | |
| ! | AGGATCCGAGAAAGCATATA+TGG | - | Chr3:1010349-1010368 | MsG0380011531.01.T01:intron | 40.0% |
| ! | CTCTTGTTTCCATTCTTCAC+AGG | - | Chr3:1008705-1008724 | MsG0380011531.01.T01:CDS | 40.0% |
| ! | TGCACCTCCAGAATCAATTT+TGG | + | Chr3:1009081-1009100 | None:intergenic | 40.0% |
| ! | TGTATGTTTGGTCCCACTTT+TGG | - | Chr3:1009050-1009069 | MsG0380011531.01.T01:intron | 40.0% |
| !! | TGAAGAGTACCTGTGAAGAA+TGG | + | Chr3:1008717-1008736 | None:intergenic | 40.0% |
| !!! | GAGGATCACTGATTTTCTTC+TGG | + | Chr3:1008688-1008707 | None:intergenic | 40.0% |
| AGGAGCTGAACCAAATCAGT+TGG | - | Chr3:1009626-1009645 | MsG0380011531.01.T01:intron | 45.0% | |
| ATGTCATAACTGGCCCTGTT+TGG | + | Chr3:1010109-1010128 | None:intergenic | 45.0% | |
| GCAGAGAAAGCCAACTGATT+TGG | + | Chr3:1009639-1009658 | None:intergenic | 45.0% | |
| GCTGCTCTTGGCATTACATT+GGG | - | Chr3:1009657-1009676 | MsG0380011531.01.T01:intron | 45.0% | |
| GGAATGGCTATTGCATTGCT+TGG | - | Chr3:1010453-1010472 | MsG0380011531.01.T01:CDS | 45.0% | |
| TGCTGCTCTTGGCATTACAT+TGG | - | Chr3:1009656-1009675 | MsG0380011531.01.T01:intron | 45.0% | |
| ATGCAATAGCCATTCCGCAG+AGG | + | Chr3:1010449-1010468 | None:intergenic | 50.0% | |
| CACTGTATTCCTCTGCGGAA+TGG | - | Chr3:1010437-1010456 | MsG0380011531.01.T01:CDS | 50.0% | |
| GATTGGACATTGGGCCTGTT+TGG | - | Chr3:1009839-1009858 | MsG0380011531.01.T01:intron | 50.0% | |
| TTTCTCGGATCCTCTACAGC+AGG | + | Chr3:1010342-1010361 | None:intergenic | 50.0% | |
| ! | TTGGCTTTCTCTGCTGCTCT+TGG | - | Chr3:1009645-1009664 | MsG0380011531.01.T01:intron | 50.0% |
| !! | GGTGTCACTGTATTCCTCTG+CGG | - | Chr3:1010432-1010451 | MsG0380011531.01.T01:CDS | 50.0% |
| GATCCTCTACAGCAGCTGCA+TGG | - | Chr3:1010267-1010286 | MsG0380011531.01.T01:intron | 55.0% | |
| TGGCGACGCCAATAGAGTTG+AGG | - | Chr3:1010517-1010536 | MsG0380011531.01.T01:CDS | 55.0% | |
| GCACCATGCAGCTGCTGTAG+AGG | + | Chr3:1010273-1010292 | None:intergenic | 60.0% | |
| GCAGCACACTGCACAGCTGT+TGG | - | Chr3:1010291-1010310 | MsG0380011531.01.T01:intron | 60.0% | |
| GTAAGTGCGGCCTGCTGTAG+AGG | - | Chr3:1010329-1010348 | MsG0380011531.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 1008650 | 1010542 | 1008650 | ID=MsG0380011531.01;Name=MsG0380011531.01 |
| Chr3 | mRNA | 1008650 | 1010542 | 1008650 | ID=MsG0380011531.01.T01;Parent=MsG0380011531.01;Name=MsG0380011531.01.T01;_AED=0.49;_eAED=0.57;_QI=0|0|0|1|0|0|2|0|86 |
| Chr3 | exon | 1010411 | 1010542 | 1010411 | ID=MsG0380011531.01.T01:exon:677;Parent=MsG0380011531.01.T01 |
| Chr3 | exon | 1008650 | 1008778 | 1008650 | ID=MsG0380011531.01.T01:exon:676;Parent=MsG0380011531.01.T01 |
| Chr3 | CDS | 1010411 | 1010542 | 1010411 | ID=MsG0380011531.01.T01:cds;Parent=MsG0380011531.01.T01 |
| Chr3 | CDS | 1008650 | 1008778 | 1008650 | ID=MsG0380011531.01.T01:cds;Parent=MsG0380011531.01.T01 |
| Gene Sequence |
| Protein sequence |
