AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011549.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011549.01.T01 MTR_1g101950 59.239 184 57 4 219 384 148 331 8.65e-58 192
MsG0380011549.01.T01 MTR_6g089480 55.080 187 66 5 219 387 119 305 1.25e-54 183
MsG0380011549.01.T01 MTR_1g069490 45.669 254 105 8 153 384 150 392 3.08e-51 177
MsG0380011549.01.T01 MTR_1g069490 29.358 218 95 8 109 279 4 209 1.14e-12 69.3
MsG0380011549.01.T01 MTR_1g069745 54.190 179 62 5 219 384 108 279 1.17e-46 161
MsG0380011549.01.T01 MTR_6g089480 56.774 155 53 3 219 359 119 273 8.64e-45 156
MsG0380011549.01.T01 MTR_6g089480 57.237 152 51 3 219 356 119 270 5.11e-44 154
MsG0380011549.01.T01 MTR_1g057810 52.717 184 69 4 219 384 372 555 2.36e-41 153
MsG0380011549.01.T01 MTR_1g057810 48.000 175 76 5 8 168 27 200 9.12e-34 132
MsG0380011549.01.T01 MTR_2g098950 45.856 181 82 4 218 382 138 318 5.84e-38 139
MsG0380011549.01.T01 MTR_4g067310 45.856 181 82 4 218 382 139 319 9.83e-38 139
MsG0380011549.01.T01 MTR_5g079460 48.925 186 76 5 219 386 192 376 9.73e-36 135
MsG0380011549.01.T01 MTR_1g105150 47.396 192 81 5 213 384 350 541 7.82e-35 135
MsG0380011549.01.T01 MTR_1g105150 48.000 175 76 5 8 168 27 200 5.48e-34 132
MsG0380011549.01.T01 MTR_1g076850 40.761 184 87 4 218 382 132 312 7.97e-35 131
MsG0380011549.01.T01 MTR_7g075860 43.478 184 86 4 219 384 168 351 4.35e-34 130
MsG0380011549.01.T01 MTR_0046s0180 62.887 97 32 1 292 384 7 103 2.47e-33 120
MsG0380011549.01.T01 MTR_8g096570 43.949 157 72 3 23 163 76 232 6.58e-29 119
MsG0380011549.01.T01 MTR_1g054730 43.103 174 71 6 219 384 228 381 3.86e-24 103
MsG0380011549.01.T01 MTR_1g071270 51.648 91 24 2 104 174 31 121 1.44e-16 77.0
MsG0380011549.01.T01 MTR_1g069480 42.105 114 45 6 52 145 4 116 1.05e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011549.01.T01 AT5G51830 49.451 182 74 4 219 382 148 329 5.42e-46 161
MsG0380011549.01.T01 AT5G51830 49.451 182 74 4 219 382 148 329 5.42e-46 161
MsG0380011549.01.T01 AT1G66430 49.462 186 75 6 219 386 190 374 5.82e-42 152
MsG0380011549.01.T01 AT1G06030 43.243 185 81 3 218 382 135 315 3.79e-39 142
MsG0380011549.01.T01 AT2G31390 43.243 185 81 3 218 382 133 313 2.52e-37 138
MsG0380011549.01.T01 AT1G06020 41.081 185 85 3 218 382 134 314 1.05e-35 134
MsG0380011549.01.T01 AT3G59480 44.262 183 82 6 218 382 134 314 3.60e-34 129
MsG0380011549.01.T01 AT4G10260 41.758 182 86 5 219 382 131 310 8.52e-34 128
MsG0380011549.01.T01 AT5G63540 40.491 163 81 4 17 163 98 260 7.79e-24 103
MsG0380011549.01.T01 AT5G63540 40.491 163 81 4 17 163 98 260 8.23e-24 103
MsG0380011549.01.T01 AT1G50390 37.671 146 70 5 241 382 3 131 1.78e-18 82.0

Find 100 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACAGATTTGCGCCATTT+TGG 0.212843 3:-1279463 None:intergenic
ACTTTCAAGAAAGCTCTTTC+TGG 0.215190 3:+1280605 MsG0380011549.01.T01:CDS
CTGATAGGGTTCTCCAACTC+TGG 0.227406 3:+1279412 MsG0380011549.01.T01:CDS
CCTGAAAATATTATAGTATT+GGG 0.251478 3:+1280054 MsG0380011549.01.T01:CDS
CCTTGATCGCGCCACATATA+TGG 0.255816 3:-1282891 None:intergenic
GTGAAACGTTGATAGATTTC+CGG 0.258185 3:+1280546 MsG0380011549.01.T01:CDS
CAGGCTAAAATATTCCATTA+TGG 0.292003 3:+1281440 MsG0380011549.01.T01:intron
TTGTGCGCCTCCTGGATTAA+AGG 0.303460 3:+1279900 MsG0380011549.01.T01:CDS
CAATTAGAAGCTTGTGATTA+GGG 0.307440 3:-1281833 None:intergenic
CGATGGTCCCTTCATATTAC+AGG 0.311149 3:+1279569 MsG0380011549.01.T01:CDS
ACAATTAGAAGCTTGTGATT+AGG 0.324413 3:-1281834 None:intergenic
CTTGATGTTTGTGCGCCTCC+TGG 0.325990 3:+1279892 MsG0380011549.01.T01:CDS
GTCCATGAAATTAGAAAATT+CGG 0.332161 3:+1279793 MsG0380011549.01.T01:CDS
TTAACCTTCTGACTTTGTTA+TGG 0.339987 3:+1283016 MsG0380011549.01.T01:three_prime_UTR
AACATATCAATATATTTAGT+TGG 0.352996 3:+1283082 MsG0380011549.01.T01:three_prime_UTR
AAGTGGACTGGTTGTTGTTT+TGG 0.354319 3:+1280524 MsG0380011549.01.T01:CDS
CCTATATTGCATCAGATTGC+CGG 0.359629 3:-1282949 None:intergenic
CCGGCAATCTGATGCAATAT+AGG 0.363669 3:+1282949 MsG0380011549.01.T01:exon
CATCACAGAAACCTCCAATT+TGG 0.367988 3:-1282662 None:intergenic
TCCTGAAAATATTATAGTAT+TGG 0.381415 3:+1280053 MsG0380011549.01.T01:CDS
CATCGGTCAATTTGAACTTC+AGG 0.386363 3:-1279825 None:intergenic
AGACTACGATGTCTCCAAAA+TGG 0.388919 3:+1279449 MsG0380011549.01.T01:CDS
AGTCATGTACTGCAAAATTC+AGG 0.394795 3:+1283055 MsG0380011549.01.T01:three_prime_UTR
CAAAATGGCGCAAATCTGTT+TGG 0.395582 3:+1279464 MsG0380011549.01.T01:CDS
TCAAACTGATGGAACCATAA+TGG 0.399197 3:-1281454 None:intergenic
AGAGAGACAAGGTTGCTGAT+AGG 0.421820 3:+1279397 MsG0380011549.01.T01:CDS
CGACGTTGAGTCACTGTGAC+TGG 0.428117 3:-1280097 None:intergenic
TTGTGCACATGTTCATTAAG+AGG 0.432199 3:-1279537 None:intergenic
ACACTCTACCCACTCTTTGC+CGG 0.434153 3:-1280565 None:intergenic
GTTGATGATGCATTTGTTAG+TGG 0.439175 3:+1282705 MsG0380011549.01.T01:CDS
TGAATTACCTGGAAAATACT+TGG 0.448299 3:-1282753 None:intergenic
ATTAGAAAATTCGGTAATCA+AGG 0.454842 3:+1279802 MsG0380011549.01.T01:CDS
GGAAAAGAGGCAAAAGCAAA+AGG 0.454997 3:+1279313 MsG0380011549.01.T01:CDS
CTTGATCGCGCCACATATAT+GGG 0.456052 3:-1282890 None:intergenic
GAGAGACAAGGTTGCTGATA+GGG 0.458553 3:+1279398 MsG0380011549.01.T01:CDS
TTGAGGATTGCTAAAGAGTC+CGG 0.477772 3:+1281512 MsG0380011549.01.T01:CDS
TTGATGATGCATTTGTTAGT+GGG 0.479441 3:+1282706 MsG0380011549.01.T01:CDS
GATCTCAATTCTTGTGGTAC+CGG 0.484795 3:+1279504 MsG0380011549.01.T01:CDS
AACGGTGAGACGTGGAAGAT+TGG 0.484932 3:+1280023 MsG0380011549.01.T01:CDS
GAAACCTACCTGTAATATGA+AGG 0.485830 3:-1279577 None:intergenic
CCATATATGTGGCGCGATCA+AGG 0.491424 3:+1282891 MsG0380011549.01.T01:CDS
GAAGAGAGACAGAGCAATCT+CGG 0.491901 3:+1279335 MsG0380011549.01.T01:CDS
GATGAGCGTGTTGACATAAC+TGG 0.492096 3:+1282681 MsG0380011549.01.T01:CDS
CAAACATCAAGGTCAGCAAC+AGG 0.497863 3:-1279880 None:intergenic
TGATAGGGTTCTCCAACTCT+GGG 0.504669 3:+1279413 MsG0380011549.01.T01:CDS
ACCTTCTGACTTTGTTATGG+TGG 0.508738 3:+1283019 MsG0380011549.01.T01:three_prime_UTR
ATCATACGAGAGAATGCAAC+CGG 0.511015 3:-1281531 None:intergenic
GAAAGAGCTTTCTTGAAAGT+AGG 0.514916 3:-1280602 None:intergenic
TTTGAAATGAATCCCAGAGT+TGG 0.517994 3:-1279425 None:intergenic
TTTCAAAAGCTCACGGGTGA+CGG 0.519480 3:-1279358 None:intergenic
CACGGAAGGGAAAAGATGAC+AGG 0.519724 3:+1279291 None:intergenic
GCAGATCAGTGCAGTTGAGT+TGG 0.520437 3:+1281755 MsG0380011549.01.T01:CDS
CTGAAAATATTATAGTATTG+GGG 0.525050 3:+1280055 MsG0380011549.01.T01:CDS
ACCCTACAAAAGATGCTGTC+CGG 0.525806 3:+1282930 MsG0380011549.01.T01:CDS
GAAAAGATGACAGGGAAAAG+AGG 0.529894 3:+1279300 None:intergenic
TTTGACTGTTTGAACACCAT+CGG 0.530622 3:-1279842 None:intergenic
GATAGATTTCCGGCAAAGAG+TGG 0.546022 3:+1280556 MsG0380011549.01.T01:CDS
TGGCTCATCAATCAAACTGA+TGG 0.547967 3:-1281465 None:intergenic
TTATATTCCGCCCATATATG+TGG 0.548754 3:+1282880 MsG0380011549.01.T01:CDS
AACGAAGAAACCTTTAATCC+AGG 0.549242 3:-1279910 None:intergenic
AAGCTTCTAATTGTCACTGA+AGG 0.551946 3:+1281843 MsG0380011549.01.T01:CDS
GTACGATGAGCCGACTTGCA+TGG 0.553544 3:-1281485 None:intergenic
ATTGTCACTGAAGGGTCAAA+CGG 0.553842 3:+1281852 MsG0380011549.01.T01:CDS
TCTTCCGATCTCAATTCTTG+TGG 0.554279 3:+1279498 MsG0380011549.01.T01:CDS
ACCCGAGTTTCAAAAGCTCA+CGG 0.569058 3:-1279365 None:intergenic
GATTAGGGCGTAAAAGCTGT+TGG 0.573193 3:-1281818 None:intergenic
CAGGAGGCGCACAAACATCA+AGG 0.575331 3:-1279891 None:intergenic
TGAAAATATTATAGTATTGG+GGG 0.578622 3:+1280056 MsG0380011549.01.T01:CDS
GAATTACCTGGAAAATACTT+GGG 0.585959 3:-1282752 None:intergenic
GGTCAAAATCTCTAATGTAA+CGG 0.586449 3:+1280005 MsG0380011549.01.T01:intron
CTGCAACAAAACAAGTGGAC+TGG 0.587776 3:+1280512 MsG0380011549.01.T01:CDS
CCCGAGTTTCAAAAGCTCAC+GGG 0.588439 3:-1279364 None:intergenic
GGGCGGAATATAACGCTGCA+TGG 0.591051 3:-1282870 None:intergenic
CTGATGCAATATAGGAACAT+CGG 0.593359 3:+1282957 MsG0380011549.01.T01:exon
GACGTTGAGTCACTGTGACT+GGG 0.594517 3:-1280096 None:intergenic
GATGGTGTTCAAACAGTCAA+AGG 0.597057 3:+1279844 MsG0380011549.01.T01:CDS
AGCTTCTAATTGTCACTGAA+GGG 0.598976 3:+1281844 MsG0380011549.01.T01:CDS
TTTCTTGAAAGTAGGCACTT+CGG 0.599332 3:-1280594 None:intergenic
GAAGGCTGCAACAAAACAAG+TGG 0.603837 3:+1280507 MsG0380011549.01.T01:intron
ATAGATTTCCGGCAAAGAGT+GGG 0.603860 3:+1280557 MsG0380011549.01.T01:CDS
AAACCTACCTGTAATATGAA+GGG 0.605332 3:-1279576 None:intergenic
CGGCTCATCGTACTGCCTTG+AGG 0.612068 3:+1281495 MsG0380011549.01.T01:CDS
TGCACATGTTCATTAAGAGG+AGG 0.615105 3:-1279534 None:intergenic
CTGAAGTTCAAATTGACCGA+TGG 0.623080 3:+1279826 MsG0380011549.01.T01:CDS
TCAAACAGTCAAAGGAGTAG+TGG 0.631978 3:+1279852 MsG0380011549.01.T01:CDS
GAAAATATTATAGTATTGGG+GGG 0.643157 3:+1280057 MsG0380011549.01.T01:CDS
GGACTCTTTAGCAATCCTCA+AGG 0.645080 3:-1281510 None:intergenic
GCCACCATAACAAAGTCAGA+AGG 0.647334 3:-1283020 None:intergenic
GATTGATGAGCCATGCAAGT+CGG 0.649771 3:+1281475 MsG0380011549.01.T01:CDS
GTGCACAAAACTACTCTCGA+TGG 0.652622 3:+1279552 MsG0380011549.01.T01:CDS
TCTAATGTAACGGTGAGACG+TGG 0.656398 3:+1280015 MsG0380011549.01.T01:CDS
GTTTGCTTTGAAGAGAGACA+AGG 0.658780 3:+1279386 MsG0380011549.01.T01:CDS
GGTACCACAAGAATTGAGAT+CGG 0.666538 3:-1279502 None:intergenic
ACAACTAGCATAATCAAAAG+GGG 0.666914 3:-1283108 None:intergenic
AATAACACTTCAGATAGACT+CGG 0.667753 3:-1281720 None:intergenic
ACGGAAGGGAAAAGATGACA+GGG 0.668784 3:+1279292 None:intergenic
AATACAGCAACATCATCATG+AGG 0.670443 3:-1281795 None:intergenic
ATTAAGAGGAGGCAGTACAC+CGG 0.703216 3:-1279523 None:intergenic
GATCGCGCCACATATATGGG+CGG 0.715633 3:-1282887 None:intergenic
GAAGAAACCTTTAATCCAGG+AGG 0.736016 3:-1279907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTAATTTTATTATTA+CGG + Chr3:1279619-1279638 MsG0380011549.01.T01:intron 0.0%
!! AAAGATAATAATTTAATAAG+TGG + Chr3:1280194-1280213 MsG0380011549.01.T01:intron 10.0%
!! AAGATAATAATTTAATAAGT+GGG + Chr3:1280195-1280214 MsG0380011549.01.T01:intron 10.0%
!! TTAATTTAACAATAAGAAAA+GGG - Chr3:1281030-1281049 None:intergenic 10.0%
!! TTTCTTATTGTTAAATTAAA+GGG + Chr3:1281031-1281050 MsG0380011549.01.T01:intron 10.0%
!!! ATAAAAAAGCAAAATAATTT+TGG - Chr3:1282220-1282239 None:intergenic 10.0%
!!! TTTAATTTAACAATAAGAAA+AGG - Chr3:1281031-1281050 None:intergenic 10.0%
!!! TTTTCTTATTGTTAAATTAA+AGG + Chr3:1281030-1281049 MsG0380011549.01.T01:intron 10.0%
!! AACATATCAATATATTTAGT+TGG + Chr3:1283082-1283101 MsG0380011549.01.T01:three_prime_UTR 15.0%
!! ATATATGTATTAAGATGAAA+AGG - Chr3:1279948-1279967 None:intergenic 15.0%
!!! ATTACAGCAAATTTTAAAAA+TGG - Chr3:1282467-1282486 None:intergenic 15.0%
!! AAAATTTACCTTAATGACAT+CGG - Chr3:1281629-1281648 None:intergenic 20.0%
!! CCTGAAAATATTATAGTATT+GGG + Chr3:1280054-1280073 MsG0380011549.01.T01:CDS 20.0%
!! CTGAAAATATTATAGTATTG+GGG + Chr3:1280055-1280074 MsG0380011549.01.T01:CDS 20.0%
!! TACTAATTAGCATAACTTTA+AGG + Chr3:1280407-1280426 MsG0380011549.01.T01:intron 20.0%
!! TCCTGAAAATATTATAGTAT+TGG + Chr3:1280053-1280072 MsG0380011549.01.T01:CDS 20.0%
!! TCGAATGTAAATTAACATAT+TGG + Chr3:1282023-1282042 MsG0380011549.01.T01:intron 20.0%
!! TTCATAATTTCTCATTCTTA+AGG + Chr3:1279722-1279741 MsG0380011549.01.T01:intron 20.0%
!!! AATTTTAAAAATGGAAGGTA+CGG - Chr3:1282458-1282477 None:intergenic 20.0%
!!! CAGATTTTAATTGTCTAAAT+AGG + Chr3:1281919-1281938 MsG0380011549.01.T01:intron 20.0%
!!! CTTTTGATGAAAATAGTAAA+GGG + Chr3:1282262-1282281 MsG0380011549.01.T01:intron 20.0%
!!! TGAAAATATTATAGTATTGG+GGG + Chr3:1280056-1280075 MsG0380011549.01.T01:CDS 20.0%
!!! TTCACAGTACTATATTTTAT+AGG + Chr3:1282516-1282535 MsG0380011549.01.T01:intron 20.0%
!!! TTTAATTTAATACTGATTGC+AGG + Chr3:1281421-1281440 MsG0380011549.01.T01:intron 20.0%
!!! TTTTGAATTCAACTATAACA+TGG - Chr3:1280303-1280322 None:intergenic 20.0%
!!! TTTTGATGAAAATAGTAAAG+GGG + Chr3:1282263-1282282 MsG0380011549.01.T01:intron 20.0%
! AAATCTGAGTTAAATGACTT+TGG - Chr3:1281906-1281925 None:intergenic 25.0%
! ACAATAAGAAAAGGGAAAAA+AGG - Chr3:1281022-1281041 None:intergenic 25.0%
! ACATTGTAGATTTCTTAACA+TGG - Chr3:1280783-1280802 None:intergenic 25.0%
! AGATTTGAACAAATCAAACA+TGG - Chr3:1280760-1280779 None:intergenic 25.0%
! ATAAAGAGCAAAGAAGATAA+TGG - Chr3:1281968-1281987 None:intergenic 25.0%
! ATTAGAAAATTCGGTAATCA+AGG + Chr3:1279802-1279821 MsG0380011549.01.T01:CDS 25.0%
! ATTATACAGACTTAAACCAT+AGG - Chr3:1281401-1281420 None:intergenic 25.0%
! ATTTCTCATTCTTAAGGAAT+AGG + Chr3:1279728-1279747 MsG0380011549.01.T01:intron 25.0%
! GTCCATGAAATTAGAAAATT+CGG + Chr3:1279793-1279812 MsG0380011549.01.T01:CDS 25.0%
! TAAAATGGTTTCTATTCGAT+GGG - Chr3:1280979-1280998 None:intergenic 25.0%
! TAAACAGAGATGGAAATTAA+AGG - Chr3:1281359-1281378 None:intergenic 25.0%
! TAACCATGTAAGTAAACAAA+TGG - Chr3:1280707-1280726 None:intergenic 25.0%
! TGTTTACTTACATGGTTATT+TGG + Chr3:1280709-1280728 MsG0380011549.01.T01:intron 25.0%
! TTAAAATGGTTTCTATTCGA+TGG - Chr3:1280980-1280999 None:intergenic 25.0%
! TTAAGAAATCTACAATGTGT+TGG + Chr3:1280785-1280804 MsG0380011549.01.T01:intron 25.0%
! TTTGATGAAAATAGTAAAGG+GGG + Chr3:1282264-1282283 MsG0380011549.01.T01:intron 25.0%
!! AAGAAGATAATGGTAATGAA+AGG - Chr3:1281958-1281977 None:intergenic 25.0%
!! ATTGATTACACTTTTCTGAA+TGG + Chr3:1280818-1280837 MsG0380011549.01.T01:intron 25.0%
!! CAGTACTATATTTTATAGGT+AGG + Chr3:1282520-1282539 MsG0380011549.01.T01:intron 25.0%
!! CCCAATACTATAATATTTTC+AGG - Chr3:1280057-1280076 None:intergenic 25.0%
!! CTTTATGTTATGAGAAGTTT+TGG + Chr3:1280331-1280350 MsG0380011549.01.T01:intron 25.0%
!! GAAAATATTATAGTATTGGG+GGG + Chr3:1280057-1280076 MsG0380011549.01.T01:CDS 25.0%
!! GCTTTTGATGAAAATAGTAA+AGG + Chr3:1282261-1282280 MsG0380011549.01.T01:intron 25.0%
!! TACCGAATTTTCTAATTTCA+TGG - Chr3:1279798-1279817 None:intergenic 25.0%
!!! AATGAATTTAGTTCTGATCT+AGG + Chr3:1280243-1280262 MsG0380011549.01.T01:intron 25.0%
!!! ATAACTTTAAGGATGTTTTG+TGG + Chr3:1280418-1280437 MsG0380011549.01.T01:intron 25.0%
!!! ATTTTAAAAATGGAAGGTAC+GGG - Chr3:1282457-1282476 None:intergenic 25.0%
!!! ATTTTTTGTGCAGGATTTTA+AGG + Chr3:1282638-1282657 MsG0380011549.01.T01:intron 25.0%
!!! CAGCAAATTTTAAAAATGGA+AGG - Chr3:1282463-1282482 None:intergenic 25.0%
!!! TGATTACTAATTTTTTGTGC+AGG + Chr3:1282629-1282648 MsG0380011549.01.T01:intron 25.0%
!!! TTTTTTGTGCAGGATTTTAA+GGG + Chr3:1282639-1282658 MsG0380011549.01.T01:intron 25.0%
AAAAGGGAAAAAAGGTAGAA+TGG - Chr3:1281014-1281033 None:intergenic 30.0%
AAAATGGTTTCTATTCGATG+GGG - Chr3:1280978-1280997 None:intergenic 30.0%
AAACCTACCTGTAATATGAA+GGG - Chr3:1279579-1279598 None:intergenic 30.0%
AATAACACTTCAGATAGACT+CGG - Chr3:1281723-1281742 None:intergenic 30.0%
ACAAGTACCAATAGATTACT+CGG - Chr3:1279984-1280003 None:intergenic 30.0%
ACAATTAGAAGCTTGTGATT+AGG - Chr3:1281837-1281856 None:intergenic 30.0%
ACTTCTTACCATATGTGTTT+AGG + Chr3:1281113-1281132 MsG0380011549.01.T01:intron 30.0%
AGAAAAAAGTTGTGAGTGTT+TGG + Chr3:1282806-1282825 MsG0380011549.01.T01:intron 30.0%
AGTAATCTATTGGTACTTGT+AGG + Chr3:1279984-1280003 MsG0380011549.01.T01:intron 30.0%
AGTAGTAGTGTAGTAAATCA+TGG - Chr3:1279673-1279692 None:intergenic 30.0%
CAATTAGAAGCTTGTGATTA+GGG - Chr3:1281836-1281855 None:intergenic 30.0%
CAGGCTAAAATATTCCATTA+TGG + Chr3:1281440-1281459 MsG0380011549.01.T01:intron 30.0%
GAAAAAAGAATAACCTGCAA+TGG - Chr3:1281695-1281714 None:intergenic 30.0%
GAATTACCTGGAAAATACTT+GGG - Chr3:1282755-1282774 None:intergenic 30.0%
GGTCAAAATCTCTAATGTAA+CGG + Chr3:1280005-1280024 MsG0380011549.01.T01:intron 30.0%
GTAAAGATATCTGAATTACC+TGG - Chr3:1282767-1282786 None:intergenic 30.0%
TATGATGATCTCTTAACAGA+AGG + Chr3:1280489-1280508 MsG0380011549.01.T01:intron 30.0%
TGAATTACCTGGAAAATACT+TGG - Chr3:1282756-1282775 None:intergenic 30.0%
TGTCCATTTGTTTACTTACA+TGG + Chr3:1280701-1280720 MsG0380011549.01.T01:intron 30.0%
TTAACCTTCTGACTTTGTTA+TGG + Chr3:1283016-1283035 MsG0380011549.01.T01:three_prime_UTR 30.0%
! AAAGGGTATAATGAGCATAT+GGG + Chr3:1281597-1281616 MsG0380011549.01.T01:intron 30.0%
! AGATAATGGTAATGAAAGGA+AGG - Chr3:1281954-1281973 None:intergenic 30.0%
! ATCAGCTAATCTAGAACATA+AGG - Chr3:1280160-1280179 None:intergenic 30.0%
! ATTCAAGAACCTATTGCTTT+TGG + Chr3:1281216-1281235 MsG0380011549.01.T01:intron 30.0%
!! AAATTTGCTGTAATACGTAC+CGG + Chr3:1282473-1282492 MsG0380011549.01.T01:intron 30.0%
!! AATATGATCTCTAGGATTTC+GGG - Chr3:1281289-1281308 None:intergenic 30.0%
!! CAATATGATCTCTAGGATTT+CGG - Chr3:1281290-1281309 None:intergenic 30.0%
!! GTTGATGAAGTTATTTTGTG+TGG + Chr3:1282830-1282849 MsG0380011549.01.T01:intron 30.0%
!! TTGATGATGCATTTGTTAGT+GGG + Chr3:1282706-1282725 MsG0380011549.01.T01:CDS 30.0%
!!! TGGTTGGTTAGGTTTTAAAA+TGG - Chr3:1280994-1281013 None:intergenic 30.0%
AACGAAGAAACCTTTAATCC+AGG - Chr3:1279913-1279932 None:intergenic 35.0%
AAGATGAAAAGGATGTCTAG+TGG - Chr3:1279937-1279956 None:intergenic 35.0%
AAGCTTCTAATTGTCACTGA+AGG + Chr3:1281843-1281862 MsG0380011549.01.T01:CDS 35.0%
AATACAGCAACATCATCATG+AGG - Chr3:1281798-1281817 None:intergenic 35.0%
ACAACCAAGTAAAATGGGTA+CGG - Chr3:1282151-1282170 None:intergenic 35.0%
ACTTAAACCATAGGTCTCTA+TGG - Chr3:1281392-1281411 None:intergenic 35.0%
ACTTTCAAGAAAGCTCTTTC+TGG + Chr3:1280605-1280624 MsG0380011549.01.T01:CDS 35.0%
AGCGAAACAACCAAGTAAAA+TGG - Chr3:1282157-1282176 None:intergenic 35.0%
AGCTTCTAATTGTCACTGAA+GGG + Chr3:1281844-1281863 MsG0380011549.01.T01:CDS 35.0%
AGTCATGTACTGCAAAATTC+AGG + Chr3:1283055-1283074 MsG0380011549.01.T01:three_prime_UTR 35.0%
ATTCTCTCCGAGTAATCTAT+TGG + Chr3:1279974-1279993 MsG0380011549.01.T01:intron 35.0%
CACTTTATAAATGCCATTGC+AGG + Chr3:1281679-1281698 MsG0380011549.01.T01:intron 35.0%
CCACAGTTTATAAACAGAGA+TGG - Chr3:1281369-1281388 None:intergenic 35.0%
CCATCTCTGTTTATAAACTG+TGG + Chr3:1281366-1281385 MsG0380011549.01.T01:intron 35.0%
CTAACGAATGTGAATCTATG+TGG + Chr3:1281072-1281091 MsG0380011549.01.T01:intron 35.0%
CTGATATAGATCAAATGCAC+TGG + Chr3:1279767-1279786 MsG0380011549.01.T01:intron 35.0%
CTGATGCAATATAGGAACAT+CGG + Chr3:1282957-1282976 MsG0380011549.01.T01:exon 35.0%
CTTACCATATGTGTTTAGGT+TGG + Chr3:1281117-1281136 MsG0380011549.01.T01:intron 35.0%
GAAACCTACCTGTAATATGA+AGG - Chr3:1279580-1279599 None:intergenic 35.0%
GAAAGAGCTTTCTTGAAAGT+AGG - Chr3:1280605-1280624 None:intergenic 35.0%
GAATGCAACATTGTCATGTT+TGG + Chr3:1280897-1280916 MsG0380011549.01.T01:intron 35.0%
GCAAAATGATATGATACGTC+TGG + Chr3:1281177-1281196 MsG0380011549.01.T01:intron 35.0%
GCAACATTATGATAGAAGTG+TGG + Chr3:1282312-1282331 MsG0380011549.01.T01:intron 35.0%
GCATGTTCTTACAACAACAA+TGG + Chr3:1282381-1282400 MsG0380011549.01.T01:intron 35.0%
GCGAAACAACCAAGTAAAAT+GGG - Chr3:1282156-1282175 None:intergenic 35.0%
GTATGATCCGAATTGAGATT+GGG + Chr3:1281547-1281566 MsG0380011549.01.T01:intron 35.0%
TAGAACATAAGGACTTACCT+AGG - Chr3:1280149-1280168 None:intergenic 35.0%
TAGGTTGTAAAACTTACGCA+AGG + Chr3:1282539-1282558 MsG0380011549.01.T01:intron 35.0%
TCAAACTGATGGAACCATAA+TGG - Chr3:1281457-1281476 None:intergenic 35.0%
TGACTTTGGTAAGCTTACAT+TGG - Chr3:1281892-1281911 None:intergenic 35.0%
TGGTTTCCTGTTACTATCTA+CGG + Chr3:1280729-1280748 MsG0380011549.01.T01:intron 35.0%
TTAAAAGTTCGTGCATTTCG+AGG + Chr3:1280920-1280939 MsG0380011549.01.T01:intron 35.0%
TTATATTCCGCCCATATATG+TGG + Chr3:1282880-1282899 MsG0380011549.01.T01:CDS 35.0%
TTCATCTGCAGTTATAAGCA+AGG + Chr3:1280668-1280687 MsG0380011549.01.T01:intron 35.0%
TTCTGATCTAGGTTATGAAC+TGG + Chr3:1280254-1280273 MsG0380011549.01.T01:intron 35.0%
TTGTGCACATGTTCATTAAG+AGG - Chr3:1279540-1279559 None:intergenic 35.0%
TTTCTTGAAAGTAGGCACTT+CGG - Chr3:1280597-1280616 None:intergenic 35.0%
TTTGACTGTTTGAACACCAT+CGG - Chr3:1279845-1279864 None:intergenic 35.0%
! AAAAGGTAGAATGGTTGGTT+AGG - Chr3:1281005-1281024 None:intergenic 35.0%
! AATATTATAGTATTGGGGGG+TGG + Chr3:1280060-1280079 MsG0380011549.01.T01:CDS 35.0%
! GAAAGGGTATAATGAGCATA+TGG + Chr3:1281596-1281615 MsG0380011549.01.T01:intron 35.0%
! GTGAAACGTTGATAGATTTC+CGG + Chr3:1280546-1280565 MsG0380011549.01.T01:CDS 35.0%
! TTTGAAATGAATCCCAGAGT+TGG - Chr3:1279428-1279447 None:intergenic 35.0%
!! ATGAAGTTATTTTGTGTGGC+AGG + Chr3:1282834-1282853 MsG0380011549.01.T01:intron 35.0%
!! CAATTTGCTGTAATACGTAC+CGG - Chr3:1282495-1282514 None:intergenic 35.0%
!! GCAGATGATTTGGTATATGT+TGG + Chr3:1281141-1281160 MsG0380011549.01.T01:intron 35.0%
!! GTTGATGATGCATTTGTTAG+TGG + Chr3:1282705-1282724 MsG0380011549.01.T01:CDS 35.0%
!! TTATTTTGTGTGGCAGGATA+AGG + Chr3:1282840-1282859 MsG0380011549.01.T01:intron 35.0%
AACATTTCAGTCCACTCATC+AGG - Chr3:1281991-1282010 None:intergenic 40.0%
AATGTGAATCTATGTGGCTG+CGG + Chr3:1281078-1281097 MsG0380011549.01.T01:intron 40.0%
AGACTACGATGTCTCCAAAA+TGG + Chr3:1279449-1279468 MsG0380011549.01.T01:CDS 40.0%
ATAGATTTCCGGCAAAGAGT+GGG + Chr3:1280557-1280576 MsG0380011549.01.T01:CDS 40.0%
ATCATACGAGAGAATGCAAC+CGG - Chr3:1281534-1281553 None:intergenic 40.0%
ATTGTCACTGAAGGGTCAAA+CGG + Chr3:1281852-1281871 MsG0380011549.01.T01:CDS 40.0%
CAAAATGGCGCAAATCTGTT+TGG + Chr3:1279464-1279483 MsG0380011549.01.T01:CDS 40.0%
CAAGTAAAATGGGTACGGTT+CGG - Chr3:1282146-1282165 None:intergenic 40.0%
CAAGTGTAGCCAAAAGCAAT+AGG - Chr3:1281228-1281247 None:intergenic 40.0%
CATCACAGAAACCTCCAATT+TGG - Chr3:1282665-1282684 None:intergenic 40.0%
CATCGGTCAATTTGAACTTC+AGG - Chr3:1279828-1279847 None:intergenic 40.0%
CCAGAAGCAATATGATCTCT+AGG - Chr3:1281297-1281316 None:intergenic 40.0%
CCATAGTCCCAATCTCAATT+CGG - Chr3:1281557-1281576 None:intergenic 40.0%
CCTAGAGATCATATTGCTTC+TGG + Chr3:1281294-1281313 MsG0380011549.01.T01:intron 40.0%
CCTATATTGCATCAGATTGC+CGG - Chr3:1282952-1282971 None:intergenic 40.0%
CGTATGATCCGAATTGAGAT+TGG + Chr3:1281546-1281565 MsG0380011549.01.T01:intron 40.0%
CTGAAGTTCAAATTGACCGA+TGG + Chr3:1279826-1279845 MsG0380011549.01.T01:CDS 40.0%
GAAGAAACCTTTAATCCAGG+AGG - Chr3:1279910-1279929 None:intergenic 40.0%
GAGTACCCTACTATGTCATT+GGG - Chr3:1282052-1282071 None:intergenic 40.0%
GATCATAGACCTCATCAAGA+AGG + Chr3:1281331-1281350 MsG0380011549.01.T01:intron 40.0%
GATCTCAATTCTTGTGGTAC+CGG + Chr3:1279504-1279523 MsG0380011549.01.T01:CDS 40.0%
GATGGTGTTCAAACAGTCAA+AGG + Chr3:1279844-1279863 MsG0380011549.01.T01:CDS 40.0%
GGAAAAGAGGCAAAAGCAAA+AGG + Chr3:1279313-1279332 MsG0380011549.01.T01:CDS 40.0%
GGGAAAAAAGGTAGAATGGT+TGG - Chr3:1281010-1281029 None:intergenic 40.0%
GGTACCACAAGAATTGAGAT+CGG - Chr3:1279505-1279524 None:intergenic 40.0%
GGTTTCCTGTTACTATCTAC+GGG + Chr3:1280730-1280749 MsG0380011549.01.T01:intron 40.0%
GTTGATGCAGCAAAAACACA+CGG + Chr3:1282180-1282199 MsG0380011549.01.T01:intron 40.0%
GTTTCCTGTTACTATCTACG+GGG + Chr3:1280731-1280750 MsG0380011549.01.T01:intron 40.0%
TAAAGGGTCATGCTAACTTG+AGG + Chr3:1281047-1281066 MsG0380011549.01.T01:intron 40.0%
TATCATACGCGTACCCAATA+CGG - Chr3:1282109-1282128 None:intergenic 40.0%
TCAAACAGTCAAAGGAGTAG+TGG + Chr3:1279852-1279871 MsG0380011549.01.T01:CDS 40.0%
TCTTCCGATCTCAATTCTTG+TGG + Chr3:1279498-1279517 MsG0380011549.01.T01:CDS 40.0%
TGCACATGTTCATTAAGAGG+AGG - Chr3:1279537-1279556 None:intergenic 40.0%
TGCTCCAACCTAAACACATA+TGG - Chr3:1281124-1281143 None:intergenic 40.0%
TGGCTCATCAATCAAACTGA+TGG - Chr3:1281468-1281487 None:intergenic 40.0%
TTGAGGATTGCTAAAGAGTC+CGG + Chr3:1281512-1281531 MsG0380011549.01.T01:CDS 40.0%
TTGATGCAGCAAAAACACAC+GGG + Chr3:1282181-1282200 MsG0380011549.01.T01:intron 40.0%
TTGCTCTTTATCCTGATGAG+TGG + Chr3:1281977-1281996 MsG0380011549.01.T01:intron 40.0%
! ACCTTCTGACTTTGTTATGG+TGG + Chr3:1283019-1283038 MsG0380011549.01.T01:three_prime_UTR 40.0%
! ATAGTAGGGTACTCCAAACA+TGG + Chr3:1282058-1282077 MsG0380011549.01.T01:intron 40.0%
! CAAACAGATTTGCGCCATTT+TGG - Chr3:1279466-1279485 None:intergenic 40.0%
! TATAGATCAAATGCACTGGC+AGG + Chr3:1279771-1279790 MsG0380011549.01.T01:intron 40.0%
! TTCTGACCCAAGTATTTTCC+AGG + Chr3:1282746-1282765 MsG0380011549.01.T01:CDS 40.0%
!! ATTCCAAGCTCACTTTTCAG+GGG - Chr3:1280881-1280900 None:intergenic 40.0%
!! CAGGATTTTAAGGGCCAAAT+TGG + Chr3:1282648-1282667 MsG0380011549.01.T01:intron 40.0%
!! CATTCCAAGCTCACTTTTCA+GGG - Chr3:1280882-1280901 None:intergenic 40.0%
!! CTATTGCTTTTGGCTACACT+TGG + Chr3:1281226-1281245 MsG0380011549.01.T01:intron 40.0%
!! GATTTTAAGGGCCAAATTGG+AGG + Chr3:1282651-1282670 MsG0380011549.01.T01:CDS 40.0%
!! GTTTGCTTTGAAGAGAGACA+AGG + Chr3:1279386-1279405 MsG0380011549.01.T01:CDS 40.0%
!! TGATGAGTGGACTGAAATGT+TGG + Chr3:1281990-1282009 MsG0380011549.01.T01:intron 40.0%
!! TTAAAGGCACCTTCTTGATG+AGG - Chr3:1281343-1281362 None:intergenic 40.0%
!! TTAGGTTGGAGCAGATGATT+TGG + Chr3:1281131-1281150 MsG0380011549.01.T01:intron 40.0%
!!! AAGTGGACTGGTTGTTGTTT+TGG + Chr3:1280524-1280543 MsG0380011549.01.T01:CDS 40.0%
AAGGACTTACCTAGGTTGCT+TGG - Chr3:1280141-1280160 None:intergenic 45.0%
AATCACTGTTAGCTGACTGC+TGG - Chr3:1282614-1282633 None:intergenic 45.0%
ACCCGAGTTTCAAAAGCTCA+CGG - Chr3:1279368-1279387 None:intergenic 45.0%
ACCCTACAAAAGATGCTGTC+CGG + Chr3:1282930-1282949 MsG0380011549.01.T01:CDS 45.0%
AGAGAGACAAGGTTGCTGAT+AGG + Chr3:1279397-1279416 MsG0380011549.01.T01:CDS 45.0%
ATCATACGCGTACCCAATAC+GGG - Chr3:1282108-1282127 None:intergenic 45.0%
ATTAAGAGGAGGCAGTACAC+CGG - Chr3:1279526-1279545 None:intergenic 45.0%
CAAACATCAAGGTCAGCAAC+AGG - Chr3:1279883-1279902 None:intergenic 45.0%
CCGAATTGAGATTGGGACTA+TGG + Chr3:1281554-1281573 MsG0380011549.01.T01:intron 45.0%
CCGGCAATCTGATGCAATAT+AGG + Chr3:1282949-1282968 MsG0380011549.01.T01:exon 45.0%
CGATGGTCCCTTCATATTAC+AGG + Chr3:1279569-1279588 MsG0380011549.01.T01:CDS 45.0%
CTGCAACAAAACAAGTGGAC+TGG + Chr3:1280512-1280531 MsG0380011549.01.T01:CDS 45.0%
CTTGATCGCGCCACATATAT+GGG - Chr3:1282893-1282912 None:intergenic 45.0%
GAAGAGAGACAGAGCAATCT+CGG + Chr3:1279335-1279354 MsG0380011549.01.T01:CDS 45.0%
GAAGGCTGCAACAAAACAAG+TGG + Chr3:1280507-1280526 MsG0380011549.01.T01:intron 45.0%
GAGAGACAAGGTTGCTGATA+GGG + Chr3:1279398-1279417 MsG0380011549.01.T01:CDS 45.0%
GATAGATTTCCGGCAAAGAG+TGG + Chr3:1280556-1280575 MsG0380011549.01.T01:CDS 45.0%
GATATGATACGTCTGGCATG+CGG + Chr3:1281184-1281203 MsG0380011549.01.T01:intron 45.0%
GATTAGGGCGTAAAAGCTGT+TGG - Chr3:1281821-1281840 None:intergenic 45.0%
GATTGATGAGCCATGCAAGT+CGG + Chr3:1281475-1281494 MsG0380011549.01.T01:CDS 45.0%
GCCACCATAACAAAGTCAGA+AGG - Chr3:1283023-1283042 None:intergenic 45.0%
GGACACCCAATGACATAGTA+GGG + Chr3:1282044-1282063 MsG0380011549.01.T01:intron 45.0%
GGACTCTTTAGCAATCCTCA+AGG - Chr3:1281513-1281532 None:intergenic 45.0%
GGATCAAGCCGATGTCATTA+AGG + Chr3:1281618-1281637 MsG0380011549.01.T01:intron 45.0%
GGTCCCTTCATATTACAGGT+AGG + Chr3:1279573-1279592 MsG0380011549.01.T01:intron 45.0%
GTGCACAAAACTACTCTCGA+TGG + Chr3:1279552-1279571 MsG0380011549.01.T01:CDS 45.0%
TACCGGTACTTCTCCATGTT+TGG - Chr3:1282074-1282093 None:intergenic 45.0%
TCTAATGTAACGGTGAGACG+TGG + Chr3:1280015-1280034 MsG0380011549.01.T01:CDS 45.0%
TGATAGGGTTCTCCAACTCT+GGG + Chr3:1279413-1279432 MsG0380011549.01.T01:CDS 45.0%
TGGACACCCAATGACATAGT+AGG + Chr3:1282043-1282062 MsG0380011549.01.T01:intron 45.0%
TTGGCTACACTTGGAGTTGA+TGG + Chr3:1281235-1281254 MsG0380011549.01.T01:intron 45.0%
TTTCAAAAGCTCACGGGTGA+CGG - Chr3:1279361-1279380 None:intergenic 45.0%
! CATCTTTTGTAGGGTAACGC+AGG - Chr3:1282925-1282944 None:intergenic 45.0%
! CGAACCGTACCCATTTTACT+TGG + Chr3:1282144-1282163 MsG0380011549.01.T01:intron 45.0%
! CTCCAAACATGGAGAAGTAC+CGG + Chr3:1282069-1282088 MsG0380011549.01.T01:intron 45.0%
! GATGAGCGTGTTGACATAAC+TGG + Chr3:1282681-1282700 MsG0380011549.01.T01:CDS 45.0%
! GGAGTACCCTACTATGTCAT+TGG - Chr3:1282053-1282072 None:intergenic 45.0%
!! AAAATGGGTACGGTTCGGTA+CGG - Chr3:1282141-1282160 None:intergenic 45.0%
!! GCATTCCAAGCTCACTTTTC+AGG - Chr3:1280883-1280902 None:intergenic 45.0%
!!! ACCCGTGAGCTTTTGAAACT+CGG + Chr3:1279363-1279382 MsG0380011549.01.T01:CDS 45.0%
!! ATATTAGTAAAAAAAAAAAA+AGG - Chr3:1280464-1280483 None:intergenic 5.0%
AACGGTGAGACGTGGAAGAT+TGG + Chr3:1280023-1280042 MsG0380011549.01.T01:CDS 50.0%
ACACTCTACCCACTCTTTGC+CGG - Chr3:1280568-1280587 None:intergenic 50.0%
ACTCCCCTGAAAAGTGAGCT+TGG + Chr3:1280875-1280894 MsG0380011549.01.T01:intron 50.0%
ACTGTGGCCATAGAGACCTA+TGG + Chr3:1281382-1281401 MsG0380011549.01.T01:intron 50.0%
ACTTACCTAGGTTGCTTGGC+TGG - Chr3:1280137-1280156 None:intergenic 50.0%
AGTTGGCATCTCTAAGCTGG+GGG + Chr3:1280644-1280663 MsG0380011549.01.T01:intron 50.0%
CAGTTGGCATCTCTAAGCTG+GGG + Chr3:1280643-1280662 MsG0380011549.01.T01:intron 50.0%
CCATATATGTGGCGCGATCA+AGG + Chr3:1282891-1282910 MsG0380011549.01.T01:CDS 50.0%
CCCGAGTTTCAAAAGCTCAC+GGG - Chr3:1279367-1279386 None:intergenic 50.0%
CCTTGATCGCGCCACATATA+TGG - Chr3:1282894-1282913 None:intergenic 50.0%
CTGATAGGGTTCTCCAACTC+TGG + Chr3:1279412-1279431 MsG0380011549.01.T01:CDS 50.0%
GAAGCCCCGTAGATAGTAAC+AGG - Chr3:1280738-1280757 None:intergenic 50.0%
GACGTTGAGTCACTGTGACT+GGG - Chr3:1280099-1280118 None:intergenic 50.0%
GCAGATCAGTGCAGTTGAGT+TGG + Chr3:1281755-1281774 MsG0380011549.01.T01:CDS 50.0%
GCAGTTGGCATCTCTAAGCT+GGG + Chr3:1280642-1280661 MsG0380011549.01.T01:intron 50.0%
TTGTGCGCCTCCTGGATTAA+AGG + Chr3:1279900-1279919 MsG0380011549.01.T01:CDS 50.0%
! CTTACGCAAGGTTTGCTTCG+AGG + Chr3:1282551-1282570 MsG0380011549.01.T01:intron 50.0%
! GCCGGACAGCATCTTTTGTA+GGG - Chr3:1282934-1282953 None:intergenic 50.0%
! TGCCGGACAGCATCTTTTGT+AGG - Chr3:1282935-1282954 None:intergenic 50.0%
!! CTTTCTGGTGCTGCAAACGT+GGG + Chr3:1280620-1280639 MsG0380011549.01.T01:intron 50.0%
!! TCTTTCTGGTGCTGCAAACG+TGG + Chr3:1280619-1280638 MsG0380011549.01.T01:intron 50.0%
!!! CCCGTGAGCTTTTGAAACTC+GGG + Chr3:1279364-1279383 MsG0380011549.01.T01:CDS 50.0%
ACCAGGTACGCACCCGTATT+GGG + Chr3:1282093-1282112 MsG0380011549.01.T01:intron 55.0%
ACTCTCCAGCCAAGCAACCT+AGG + Chr3:1280129-1280148 MsG0380011549.01.T01:intron 55.0%
ATCAGACGAGGCTGCTCGAA+AGG + Chr3:1281579-1281598 MsG0380011549.01.T01:intron 55.0%
CAGCAAAAACACACGGGCAG+TGG + Chr3:1282187-1282206 MsG0380011549.01.T01:intron 55.0%
CGACGTTGAGTCACTGTGAC+TGG - Chr3:1280100-1280119 None:intergenic 55.0%
CTTGATGTTTGTGCGCCTCC+TGG + Chr3:1279892-1279911 MsG0380011549.01.T01:CDS 55.0%
GATCGCGCCACATATATGGG+CGG - Chr3:1282890-1282909 None:intergenic 55.0%
GGCAGTTGGCATCTCTAAGC+TGG + Chr3:1280641-1280660 MsG0380011549.01.T01:intron 55.0%
GGGCGGAATATAACGCTGCA+TGG - Chr3:1282873-1282892 None:intergenic 55.0%
GTTGGCATCTCTAAGCTGGG+GGG + Chr3:1280645-1280664 MsG0380011549.01.T01:intron 55.0%
TACCAGGTACGCACCCGTAT+TGG + Chr3:1282092-1282111 MsG0380011549.01.T01:intron 55.0%
TCAGACGAGGCTGCTCGAAA+GGG + Chr3:1281580-1281599 MsG0380011549.01.T01:intron 55.0%
TTTCGAGCAGCCTCGTCTGA+TGG - Chr3:1281580-1281599 None:intergenic 55.0%
! CAGGAGGCGCACAAACATCA+AGG - Chr3:1279894-1279913 None:intergenic 55.0%
!! CATGGAGAAGTACCGGTACC+AGG + Chr3:1282076-1282095 MsG0380011549.01.T01:intron 55.0%
!! GTACGATGAGCCGACTTGCA+TGG - Chr3:1281488-1281507 None:intergenic 55.0%
ACCCAATACGGGTGCGTACC+TGG - Chr3:1282097-1282116 None:intergenic 60.0%
CGGCTCATCGTACTGCCTTG+AGG + Chr3:1281495-1281514 MsG0380011549.01.T01:CDS 60.0%
GGGACTATGGCCATCAGACG+AGG + Chr3:1281567-1281586 MsG0380011549.01.T01:intron 60.0%
GTGCTGCAAACGTGGGCAGT+TGG + Chr3:1280627-1280646 MsG0380011549.01.T01:intron 60.0%
TACGGGTGCGTACCTGGTAC+CGG - Chr3:1282091-1282110 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 1279301 1283115 1279301 ID=MsG0380011549.01;Name=MsG0380011549.01
Chr3 mRNA 1279301 1283115 1279301 ID=MsG0380011549.01.T01;Parent=MsG0380011549.01;Name=MsG0380011549.01.T01;_AED=0.50;_eAED=0.52;_QI=5|0.57|0.5|1|1|1|8|155|390
Chr3 exon 1279301 1279590 1279301 ID=MsG0380011549.01.T01:exon:684;Parent=MsG0380011549.01.T01
Chr3 exon 1279793 1279921 1279793 ID=MsG0380011549.01.T01:exon:685;Parent=MsG0380011549.01.T01
Chr3 exon 1280006 1280115 1280006 ID=MsG0380011549.01.T01:exon:686;Parent=MsG0380011549.01.T01
Chr3 exon 1280508 1280637 1280508 ID=MsG0380011549.01.T01:exon:687;Parent=MsG0380011549.01.T01
Chr3 exon 1281443 1281546 1281443 ID=MsG0380011549.01.T01:exon:688;Parent=MsG0380011549.01.T01
Chr3 exon 1281701 1281893 1281701 ID=MsG0380011549.01.T01:exon:689;Parent=MsG0380011549.01.T01
Chr3 exon 1282651 1282767 1282651 ID=MsG0380011549.01.T01:exon:690;Parent=MsG0380011549.01.T01
Chr3 exon 1282856 1283115 1282856 ID=MsG0380011549.01.T01:exon:691;Parent=MsG0380011549.01.T01
Chr3 five_prime_UTR 1279301 1279305 1279301 ID=MsG0380011549.01.T01:five_prime_utr;Parent=MsG0380011549.01.T01
Chr3 CDS 1279306 1279590 1279306 ID=MsG0380011549.01.T01:cds;Parent=MsG0380011549.01.T01
Chr3 CDS 1279793 1279921 1279793 ID=MsG0380011549.01.T01:cds;Parent=MsG0380011549.01.T01
Chr3 CDS 1280006 1280115 1280006 ID=MsG0380011549.01.T01:cds;Parent=MsG0380011549.01.T01
Chr3 CDS 1280508 1280637 1280508 ID=MsG0380011549.01.T01:cds;Parent=MsG0380011549.01.T01
Chr3 CDS 1281443 1281546 1281443 ID=MsG0380011549.01.T01:cds;Parent=MsG0380011549.01.T01
Chr3 CDS 1281701 1281893 1281701 ID=MsG0380011549.01.T01:cds;Parent=MsG0380011549.01.T01
Chr3 CDS 1282651 1282767 1282651 ID=MsG0380011549.01.T01:cds;Parent=MsG0380011549.01.T01
Chr3 CDS 1282856 1282960 1282856 ID=MsG0380011549.01.T01:cds;Parent=MsG0380011549.01.T01
Chr3 three_prime_UTR 1282961 1283115 1282961 ID=MsG0380011549.01.T01:three_prime_utr;Parent=MsG0380011549.01.T01
Gene Sequence

>MsG0380011549.01.T01

ATGACAGGGAAAAGAGGCAAAAGCAAAAGGAAGAGAGACAGAGCAATCTCGGCCGTCACCCGTGAGCTTTTGAAACTCGGGTTTGCTTTGAAGAGAGACAAGGTTGCTGATAGGGTTCTCCAACTCTGGGATTCATTTCAAAAAGACTACGATGTCTCCAAAATGGCGCAAATCTGTTTGGACAAGTGTCTGTCTTCCGATCTCAATTCTTGTGGTACCGGTGTACTGCCTCCTCTTAATGAACATGTGCACAAAACTACTCTCGATGGTCCCTTCATATTACAGGTCCATGAAATTAGAAAATTCGGTAATCAAGGCCTGAAGTTCAAATTGACCGATGGTGTTCAAACAGTCAAAGGAGTAGTGGTCAAGCCTGTTGCTGACCTTGATGTTTGTGCGCCTCCTGGATTAAAGGTCAAAATCTCTAATGTAACGGTGAGACGTGGAAGATTGGTTCTGCTTCCTGAAAATATTATAGTATTGGGGGGTGGATTAGTTGATGATCCCAGTCACAGTGACTCAACAAGGCTGCAACAAAACAAGTGGACTGGTTGTTGTTTTGGTGAAACGTTGATAGATTTCCGGCAAAGAGTGGGTAGAGTGTCTCTAGCCGAAGTGCCTACTTTCAAGAAAGCTCTTTCTGGTGCTGCAAACGCTAAAATATTCCATTATGGTTCCATCAGTTTGATTGATGAGCCATGCAAGTCGGCTCATCGTACTGCCTTGAGGATTGCTAAAGAGTCCGGTTGCATTCTCTCGTTATTCTTTTTTCTTACTCCGAGTCTATCTGAAGTGTTATTTTCTTGTGTATTGCAGATCAGTGCAGTTGAGTTGGCTATTTTGACTGATAAACCTCATGATGATGTTGCTGTATTCCAACAGCTTTTACGCCCTAATCACAAGCTTCTAATTGTCACTGAAGGGTCAAACGGTTGTAGATATTACACCAATGATTTTAAGGGCCAAATTGGAGGTTTCTGTGATGAGCGTGTTGACATAACTGGTGTTGATGATGCATTTGTTAGTGGGATTCTGTACGAGATAGCTTCTGACCCAAGTATTTTCCAGGATAAGGAACGTCTCCATGCAGCGTTATATTCCGCCCATATATGTGGCGCGATCAAGGTGACAGAGCCTGCGTTACCCTACAAAAGATGCTGTCCGGCAATCTGA
Protein sequence

>MsG0380011549.01.T01

MTGKRGKSKRKRDRAISAVTRELLKLGFALKRDKVADRVLQLWDSFQKDYDVSKMAQICLDKCLSSDLNSCGTGVLPPLNEHVHKTTLDGPFILQVHEIRKFGNQGLKFKLTDGVQTVKGVVVKPVADLDVCAPPGLKVKISNVTVRRGRLVLLPENIIVLGGGLVDDPSHSDSTRLQQNKWTGCCFGETLIDFRQRVGRVSLAEVPTFKKALSGAANAKIFHYGSISLIDEPCKSAHRTALRIAKESGCILSLFFFLTPSLSEVLFSCVLQISAVELAILTDKPHDDVAVFQQLLRPNHKLLIVTEGSNGCRYYTNDFKGQIGGFCDERVDITGVDDAFVSGILYEIASDPSIFQDKERLHAALYSAHICGAIKVTEPALPYKRCCPAI*