AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018250.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018250.01.T01 MTR_3g100050 57.534 219 71 5 54 262 35 241 1.57e-68 219
MsG0480018250.01.T01 MTR_5g066510 47.857 280 85 9 15 271 34 275 3.11e-64 207
MsG0480018250.01.T01 MTR_3g100040 55.249 181 76 1 83 263 69 244 1.48e-61 202
MsG0480018250.01.T01 MTR_4g093730 51.741 201 81 4 81 275 41 231 1.38e-57 191
MsG0480018250.01.T01 MTR_3g100040 54.483 145 61 1 119 263 1 140 1.31e-46 160
MsG0480018250.01.T01 MTR_4g008070 87.342 79 10 0 177 255 1 79 6.66e-45 150
MsG0480018250.01.T01 MTR_4g008090 93.421 76 4 1 102 176 12 87 2.63e-41 142
MsG0480018250.01.T01 MTR_5g066510 46.535 202 72 7 15 215 34 200 2.47e-36 131
MsG0480018250.01.T01 MTR_3g060200 40.000 95 51 2 169 263 4 92 2.12e-14 73.9
MsG0480018250.01.T01 MTR_3g060200 40.000 95 51 2 169 263 4 92 4.32e-14 73.6
MsG0480018250.01.T01 MTR_3g060200 40.000 95 51 2 169 263 4 92 4.56e-14 73.6
MsG0480018250.01.T01 MTR_3g060200 40.000 95 51 2 169 263 4 92 4.66e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018250.01.T01 AT1G51600 61.356 295 110 3 1 292 1 294 1.26e-123 359
MsG0480018250.01.T01 AT1G51600 61.356 295 110 3 1 292 1 294 1.26e-123 359
MsG0480018250.01.T01 AT3G21175 62.544 283 99 3 1 281 1 278 6.72e-117 342
MsG0480018250.01.T01 AT3G21175 62.105 285 99 4 1 281 1 280 5.94e-115 337
MsG0480018250.01.T01 AT3G21175 60.185 216 82 1 1 216 1 212 1.15e-81 249
MsG0480018250.01.T01 AT4G24470 51.269 197 87 3 68 263 68 256 1.18e-59 196
MsG0480018250.01.T01 AT4G24470 51.269 197 87 3 68 263 68 256 1.18e-59 196
MsG0480018250.01.T01 AT4G24470 51.269 197 87 3 68 263 68 256 1.46e-59 196

Find 94 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCTCATTCTTGTTTAA+TGG 0.137752 4:+2207323 None:intergenic
TCAATCTGTACTACTGTTAT+TGG 0.235229 4:-2208842 MsG0480018250.01.T01:CDS
TGGACTTATGTGGGCAAATA+AGG 0.243603 4:-2207730 MsG0480018250.01.T01:intron
CTACCATGTCCCTTGTTTCA+TGG 0.259352 4:+2207119 None:intergenic
TGGACTTGGCAGATGTAAAT+TGG 0.265787 4:+2208083 None:intergenic
AGCTTAAACCTTTCACAAAA+AGG 0.270333 4:+2207049 None:intergenic
CAGAGGGTTCTTGGCCCTTC+AGG 0.272302 4:+2207762 None:intergenic
CAAGCATTGCAGAGGGTTCT+TGG 0.288221 4:+2207753 None:intergenic
TTCACTTGATGAGAAATTAT+AGG 0.305903 4:-2207087 MsG0480018250.01.T01:CDS
TCTCATTTCCATTGCTCATA+TGG 0.307609 4:+2209705 None:intergenic
AAGGTTTAAGCTAGTTCTTT+TGG 0.307653 4:-2207038 MsG0480018250.01.T01:CDS
TTTAGGATGCAAAGAAATAA+AGG 0.321682 4:-2208106 MsG0480018250.01.T01:intron
TGACAGTCACACTTTAATAA+TGG 0.327842 4:-2209594 MsG0480018250.01.T01:CDS
ATGGATCAAGGGAATGATAT+TGG 0.357672 4:-2209575 MsG0480018250.01.T01:CDS
CAATCTGTACTACTGTTATT+GGG 0.360369 4:-2208841 MsG0480018250.01.T01:CDS
TCAGGTCCACGCCGCATCAT+TGG 0.388420 4:+2207780 None:intergenic
CGACTCCGTGTCGCCAGAAA+AGG 0.398718 4:-2209510 MsG0480018250.01.T01:intron
TAATGTAAAGGTCTGTCATA+AGG 0.412800 4:+2207163 None:intergenic
ATCAAGGACAGCAACCTTGC+CGG 0.414254 4:-2207357 MsG0480018250.01.T01:CDS
ATCTCTAAGCACTGTCTGAT+TGG 0.416220 4:+2207196 None:intergenic
ACCTTCCATGCCAATTTCTC+CGG 0.420398 4:-2208794 MsG0480018250.01.T01:CDS
CAGTACATGGATGGTATTCA+TGG 0.423116 4:-2209800 None:intergenic
TTTCTCCGGACGAAAATAAC+CGG 0.434754 4:-2208780 MsG0480018250.01.T01:CDS
TGAACCACAGGGAGCGCTTA+GGG 0.440040 4:-2207384 MsG0480018250.01.T01:intron
TCAGCTGATGCAGACTCATC+AGG 0.441839 4:+2208058 None:intergenic
GCAAGGTTGCTGTCCTTGAT+AGG 0.445283 4:+2207360 None:intergenic
ATTGGCATGGAAGGTAAGGT+TGG 0.459291 4:+2208802 None:intergenic
CACACTTTAATAATGGATCA+AGG 0.470319 4:-2209587 MsG0480018250.01.T01:CDS
TTGAACCACAGGGAGCGCTT+AGG 0.472073 4:-2207385 MsG0480018250.01.T01:intron
TTACACGGTATCTTGCTGTT+GGG 0.489725 4:+2207988 None:intergenic
GCAATGCTTGTGGACTTATG+TGG 0.493003 4:-2207740 MsG0480018250.01.T01:CDS
AATGTAAAGGTCTGTCATAA+GGG 0.495203 4:+2207164 None:intergenic
CGGAACAAGTGAAGGTTTGA+CGG 0.497532 4:-2208026 MsG0480018250.01.T01:CDS
GAAGATTTCCATTGTTAGAG+TGG 0.498104 4:+2209618 None:intergenic
CTTACACGGTATCTTGCTGT+TGG 0.501886 4:+2207987 None:intergenic
GGTTTGACGGTAGACAATAA+TGG 0.505445 4:-2208013 MsG0480018250.01.T01:CDS
AAGCACTGTCTGATTGGCCT+CGG 0.507209 4:+2207202 None:intergenic
AAGAGTGCAAAGGAGATGAT+TGG 0.514668 4:+2206998 None:intergenic
TATAGGATGTTGTTCATCAC+TGG 0.518790 4:+2209757 None:intergenic
TGTTCATATGGCATATGTAT+AGG 0.519920 4:+2209740 None:intergenic
AGACTCATCAGGATTGGACT+TGG 0.520027 4:+2208069 None:intergenic
TACATTATGATTCCGATGGA+GGG 0.521431 4:-2207147 MsG0480018250.01.T01:CDS
AGAAATTGGCATGGAAGGTA+AGG 0.522598 4:+2208798 None:intergenic
TTCTCCATTAAACAAGAATG+AGG 0.532237 4:-2207327 MsG0480018250.01.T01:CDS
TGGCTCTTCCAGTACATGGA+TGG 0.532259 4:-2209809 None:intergenic
CCTTTACATTATGATTCCGA+TGG 0.532572 4:-2207151 MsG0480018250.01.T01:CDS
CCATCGGAATCATAATGTAA+AGG 0.533858 4:+2207151 None:intergenic
TGCAACCCGTGATGTTCATA+TGG 0.534256 4:+2209728 None:intergenic
ATGATGCGGCGTGGACCTGA+AGG 0.535411 4:-2207777 MsG0480018250.01.T01:CDS
AGAACCCTCTGCAATGCTTG+TGG 0.537519 4:-2207750 MsG0480018250.01.T01:CDS
TGATGCAGACTCATCAGGAT+TGG 0.539391 4:+2208063 None:intergenic
GGTGAAATCCACTCTAACAA+TGG 0.539967 4:-2209626 MsG0480018250.01.T01:CDS
GTATTCATGGTGTTGATTCG+CGG 0.540049 4:-2209787 MsG0480018250.01.T01:CDS
ATAAATTGCGGAACAAGTGA+AGG 0.554129 4:-2208034 MsG0480018250.01.T01:CDS
TCCGGAGAAATTGGCATGGA+AGG 0.555042 4:+2208793 None:intergenic
TTACATTATGATTCCGATGG+AGG 0.555804 4:-2207148 MsG0480018250.01.T01:CDS
TTCATGGAATCGCCCTCCAT+CGG 0.560219 4:+2207135 None:intergenic
GAGCGCTTAGGGACCTATCA+AGG 0.562951 4:-2207373 MsG0480018250.01.T01:CDS
ACTTGATGAGAAATTATAGG+AGG 0.564643 4:-2207084 MsG0480018250.01.T01:CDS
TCAATGAAGCTAATCTCTGA+GGG 0.569675 4:+2208646 None:intergenic
TGGAGAATTATGTGCCGGCA+AGG 0.571633 4:+2207343 None:intergenic
ATGGATGACGATCAAAATAA+CGG 0.572622 4:-2209683 MsG0480018250.01.T01:CDS
GGCATGGAAGGTAAGGTTGG+AGG 0.573711 4:+2208805 None:intergenic
ACACTTTAATAATGGATCAA+GGG 0.577449 4:-2209586 MsG0480018250.01.T01:CDS
CAATGCTTGTGGACTTATGT+GGG 0.580586 4:-2207739 MsG0480018250.01.T01:CDS
TTTAATGGAGAATTATGTGC+CGG 0.581798 4:+2207338 None:intergenic
TAGATTTCGTGAAAAGCGGA+AGG 0.584600 4:-2208622 MsG0480018250.01.T01:CDS
ATATGCCATATGAACATCAC+GGG 0.590381 4:-2209733 MsG0480018250.01.T01:CDS
TTCGTAAAGAAGTAGCACTA+AGG 0.592761 4:-2208566 MsG0480018250.01.T01:intron
TGATTAGATTTCGTGAAAAG+CGG 0.593015 4:-2208626 MsG0480018250.01.T01:CDS
ATCAATGAAGCTAATCTCTG+AGG 0.598501 4:+2208645 None:intergenic
TGATGCGGCGTGGACCTGAA+GGG 0.602634 4:-2207776 MsG0480018250.01.T01:CDS
TATGAGCAATGGAAATGAGA+TGG 0.602965 4:-2209702 MsG0480018250.01.T01:CDS
GGGTTGCACCATATGAGCAA+TGG 0.606328 4:-2209713 MsG0480018250.01.T01:CDS
CTTGATGAGAAATTATAGGA+GGG 0.607907 4:-2207083 MsG0480018250.01.T01:CDS
CTGTACTACTGTTATTGGGA+GGG 0.609779 4:-2208837 MsG0480018250.01.T01:CDS
CATATGCCATATGAACATCA+CGG 0.625092 4:-2209734 MsG0480018250.01.T01:CDS
AGAAGTGCACGCCAATGATG+CGG 0.629029 4:-2207791 MsG0480018250.01.T01:CDS
TCTGTACTACTGTTATTGGG+AGG 0.631795 4:-2208838 MsG0480018250.01.T01:CDS
AACGGTGATTCTAACTGCGG+AGG 0.632002 4:-2209665 MsG0480018250.01.T01:CDS
AACTGTATACAAGAGTGCAA+AGG 0.641474 4:+2206988 None:intergenic
CATGTCAGTTGTAGGCATTG+TGG 0.641895 4:-2207822 MsG0480018250.01.T01:intron
GCATCAGCTGAAATAAATTG+CGG 0.642078 4:-2208046 MsG0480018250.01.T01:CDS
GAGGGCGATTCCATGAAACA+AGG 0.645633 4:-2207129 MsG0480018250.01.T01:CDS
TTCGTCCGGAGAAATTGGCA+TGG 0.650275 4:+2208789 None:intergenic
ATTCCATGAAACAAGGGACA+TGG 0.654421 4:-2207122 MsG0480018250.01.T01:CDS
TAAGTCCACAAGCATTGCAG+AGG 0.655536 4:+2207745 None:intergenic
TTCTCCGGACGAAAATAACC+GGG 0.655712 4:-2208779 MsG0480018250.01.T01:intron
TGCACGCCAATGATGCGGCG+TGG 0.659677 4:-2207786 MsG0480018250.01.T01:CDS
GGAGGAAGTGAGACTGCGGA+AGG 0.665011 4:-2209647 MsG0480018250.01.T01:CDS
AAGTCCACAAGCATTGCAGA+GGG 0.674174 4:+2207746 None:intergenic
AATAACGGTGATTCTAACTG+CGG 0.691144 4:-2209668 MsG0480018250.01.T01:CDS
AGGGCGATTCCATGAAACAA+GGG 0.697086 4:-2207128 MsG0480018250.01.T01:CDS
CTGCGGAGGAAGTGAGACTG+CGG 0.700049 4:-2209651 MsG0480018250.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATTTATAATAATCTT+AGG - Chr4:2207858-2207877 MsG0480018250.01.T01:intron 10.0%
!! GTATTCTAATCTATATATTA+TGG - Chr4:2208817-2208836 MsG0480018250.01.T01:CDS 15.0%
!!! ATTTTCAGAAATAATGAAAA+CGG - Chr4:2207409-2207428 MsG0480018250.01.T01:intron 15.0%
!!! TTCATTTTAAATTTCTAACA+AGG - Chr4:2207319-2207338 MsG0480018250.01.T01:CDS 15.0%
!! AAACGAATAAATCAAAAAGA+AGG + Chr4:2209317-2209336 None:intergenic 20.0%
!! ATATAGAAAAACAATGTTGT+CGG + Chr4:2208578-2208597 None:intergenic 20.0%
!! CATACTATCTATGATAAAAT+AGG + Chr4:2207728-2207747 None:intergenic 20.0%
!! TATATATATGCTTATGAACT+AGG + Chr4:2207699-2207718 None:intergenic 20.0%
!! TCATTTCAACTAATAATCAT+AGG + Chr4:2208348-2208367 None:intergenic 20.0%
!!! ACATTTTATTAGGGATTTAT+TGG - Chr4:2208047-2208066 MsG0480018250.01.T01:CDS 20.0%
!!! ATAATTTTGTATAGCAACAT+AGG + Chr4:2209084-2209103 None:intergenic 20.0%
!!! TCATTTTCGTTTAGAATTTT+CGG + Chr4:2207479-2207498 None:intergenic 20.0%
!!! TTGACTTTTTAAAACATTTC+TGG - Chr4:2207436-2207455 MsG0480018250.01.T01:intron 20.0%
! AAAATGAAAACAGGATACAT+GGG - Chr4:2207551-2207570 MsG0480018250.01.T01:intron 25.0%
! AATTCTAAACGAAAATGATG+AGG - Chr4:2207481-2207500 MsG0480018250.01.T01:intron 25.0%
! ACTATCTATGATAAAATAGG+AGG + Chr4:2207725-2207744 None:intergenic 25.0%
! ATTCTAAACGAAAATGATGA+GGG - Chr4:2207482-2207501 MsG0480018250.01.T01:intron 25.0%
! CTAATACGAAAAACTTCTTT+AGG - Chr4:2208614-2208633 MsG0480018250.01.T01:CDS 25.0%
! CTAGAAGATTATCATACATA+CGG + Chr4:2208436-2208455 None:intergenic 25.0%
! CTATCTATGATAAAATAGGA+GGG + Chr4:2207724-2207743 None:intergenic 25.0%
! GGTTGAAATTCTTCAAAATA+AGG + Chr4:2208868-2208887 None:intergenic 25.0%
! TCGACATATCAATGATAAAA+TGG + Chr4:2209168-2209187 None:intergenic 25.0%
! TTCACTTGATGAGAAATTAT+AGG - Chr4:2209650-2209669 MsG0480018250.01.T01:CDS 25.0%
!! GCTCATGAAACATTTTATTA+GGG - Chr4:2208038-2208057 MsG0480018250.01.T01:CDS 25.0%
!! TTTAGGATGCAAAGAAATAA+AGG - Chr4:2208631-2208650 MsG0480018250.01.T01:CDS 25.0%
!! TTTTCAGAATAATAATTCCG+AGG - Chr4:2209518-2209537 MsG0480018250.01.T01:CDS 25.0%
!! TTTTTCGTATTAGTTAGCAA+GGG + Chr4:2208607-2208626 None:intergenic 25.0%
!!! ACACTTTAATAATGGATCAA+GGG - Chr4:2207151-2207170 MsG0480018250.01.T01:CDS 25.0%
!!! ATATATTATGGTTGACTTGA+TGG - Chr4:2208829-2208848 MsG0480018250.01.T01:CDS 25.0%
!!! TACAGTTTTATATACACTGT+CGG - Chr4:2209765-2209784 MsG0480018250.01.T01:CDS 25.0%
!!! TTTTCATTTTTTGAACCACA+GGG - Chr4:2209342-2209361 MsG0480018250.01.T01:intron 25.0%
AAAAGATAGCAATTGACATG+AGG + Chr4:2209054-2209073 None:intergenic 30.0%
AAGAAAGACTATTTCAGTGT+AGG + Chr4:2208889-2208908 None:intergenic 30.0%
AATGTAAAGGTCTGTCATAA+GGG + Chr4:2209576-2209595 None:intergenic 30.0%
ACTTGATGAGAAATTATAGG+AGG - Chr4:2209653-2209672 MsG0480018250.01.T01:CDS 30.0%
AGCTTAAACCTTTCACAAAA+AGG + Chr4:2209691-2209710 None:intergenic 30.0%
ATATATGCTTATGAACTAGG+AGG + Chr4:2207696-2207715 None:intergenic 30.0%
ATCCATTGTTAATCCTGTTA+TGG - Chr4:2207805-2207824 MsG0480018250.01.T01:CDS 30.0%
ATCTGTTTACGATGATGAAT+TGG + Chr4:2209217-2209236 None:intergenic 30.0%
ATGGATGACGATCAAAATAA+CGG - Chr4:2207054-2207073 MsG0480018250.01.T01:CDS 30.0%
ATGTAGTGAATAACTGTGAT+AGG - Chr4:2207355-2207374 MsG0480018250.01.T01:CDS 30.0%
CAATCTGTACTACTGTTATT+GGG - Chr4:2207896-2207915 MsG0480018250.01.T01:intron 30.0%
CAGGAAACATAGAGATTAAA+TGG - Chr4:2208377-2208396 MsG0480018250.01.T01:intron 30.0%
CATTCAACTTGATTCAGATT+TGG - Chr4:2209238-2209257 MsG0480018250.01.T01:intron 30.0%
CTTGATGAGAAATTATAGGA+GGG - Chr4:2209654-2209673 MsG0480018250.01.T01:CDS 30.0%
GAAAATGAAAACAGGATACA+TGG - Chr4:2207550-2207569 MsG0480018250.01.T01:intron 30.0%
GTATTACTACATTACTTGGT+TGG - Chr4:2207980-2207999 MsG0480018250.01.T01:intron 30.0%
GTTGAAATGAAACTGAAAAC+AGG - Chr4:2208358-2208377 MsG0480018250.01.T01:intron 30.0%
GTTGAAGTGAAAATGAAAAC+AGG - Chr4:2207542-2207561 MsG0480018250.01.T01:intron 30.0%
TAATGTAAAGGTCTGTCATA+AGG + Chr4:2209577-2209596 None:intergenic 30.0%
TATATGCTTATGAACTAGGA+GGG + Chr4:2207695-2207714 None:intergenic 30.0%
TCAATCTGTACTACTGTTAT+TGG - Chr4:2207895-2207914 MsG0480018250.01.T01:intron 30.0%
TGACAGTCACACTTTAATAA+TGG - Chr4:2207143-2207162 MsG0480018250.01.T01:CDS 30.0%
TGATTAGATTTCGTGAAAAG+CGG - Chr4:2208111-2208130 MsG0480018250.01.T01:intron 30.0%
TGTCCGAAAAATAATCGAAA+AGG - Chr4:2209111-2209130 MsG0480018250.01.T01:intron 30.0%
TGTTCATATGGCATATGTAT+AGG + Chr4:2207000-2207019 None:intergenic 30.0%
TTCTCCATTAAACAAGAATG+AGG - Chr4:2209410-2209429 MsG0480018250.01.T01:intron 30.0%
TTTAATGGAGAATTATGTGC+CGG + Chr4:2209402-2209421 None:intergenic 30.0%
! GACTAACTTTTCTTCTAACA+TGG - Chr4:2207666-2207685 MsG0480018250.01.T01:intron 30.0%
! GGCTCATGAAACATTTTATT+AGG - Chr4:2208037-2208056 MsG0480018250.01.T01:CDS 30.0%
! GTTTTTCGTATTAGTTAGCA+AGG + Chr4:2208608-2208627 None:intergenic 30.0%
! TCAACCTCATTCTTGTTTAA+TGG + Chr4:2209417-2209436 None:intergenic 30.0%
!! AAGGTTTAAGCTAGTTCTTT+TGG - Chr4:2209699-2209718 MsG0480018250.01.T01:CDS 30.0%
!! CAAATCTGAATCAAGTTGAA+TGG + Chr4:2209240-2209259 None:intergenic 30.0%
!! CACACTTTAATAATGGATCA+AGG - Chr4:2207150-2207169 MsG0480018250.01.T01:CDS 30.0%
!! GGACCTTTTCGATTATTTTT+CGG + Chr4:2209117-2209136 None:intergenic 30.0%
!!! ATAAGTTGATGAACCTTTTC+TGG + Chr4:2207243-2207262 None:intergenic 30.0%
!!! ATTTGGCTTTTATACTCGAA+TGG - Chr4:2209255-2209274 MsG0480018250.01.T01:intron 30.0%
!!! GATGTTTGGTTTTTCTTTTC+TGG - Chr4:2207598-2207617 MsG0480018250.01.T01:intron 30.0%
!!! GTTTTCATTTTTTGAACCAC+AGG - Chr4:2209341-2209360 MsG0480018250.01.T01:intron 30.0%
AAAAACAATGTTGTCGGTCA+TGG + Chr4:2208572-2208591 None:intergenic 35.0%
AAAGAAGTAGCACTAAGGTA+TGG - Chr4:2208176-2208195 MsG0480018250.01.T01:intron 35.0%
AATAACGGTGATTCTAACTG+CGG - Chr4:2207069-2207088 MsG0480018250.01.T01:CDS 35.0%
ACCAAACATCCTTAAAAGCA+AGG + Chr4:2207588-2207607 None:intergenic 35.0%
ATAAATTGCGGAACAAGTGA+AGG - Chr4:2208703-2208722 MsG0480018250.01.T01:intron 35.0%
ATATGCCATATGAACATCAC+GGG - Chr4:2207004-2207023 MsG0480018250.01.T01:CDS 35.0%
ATCAATGAAGCTAATCTCTG+AGG + Chr4:2208095-2208114 None:intergenic 35.0%
ATGGATCAAGGGAATGATAT+TGG - Chr4:2207162-2207181 MsG0480018250.01.T01:CDS 35.0%
ATGTGGGCAAATAAGGTAAA+TGG - Chr4:2209014-2209033 MsG0480018250.01.T01:intron 35.0%
CATATGCCATATGAACATCA+CGG - Chr4:2207003-2207022 MsG0480018250.01.T01:CDS 35.0%
CCAAGTAATGTAGTAATACC+CGG + Chr4:2207979-2207998 None:intergenic 35.0%
CCATCGGAATCATAATGTAA+AGG + Chr4:2209589-2209608 None:intergenic 35.0%
CCTTTACATTATGATTCCGA+TGG - Chr4:2209586-2209605 MsG0480018250.01.T01:CDS 35.0%
CTAAAATCAAACCCTTTGCA+GGG + Chr4:2207837-2207856 None:intergenic 35.0%
GAAGATCTAAGTTCCTATGT+TGG + Chr4:2209480-2209499 None:intergenic 35.0%
GAAGATTTCCATTGTTAGAG+TGG + Chr4:2207122-2207141 None:intergenic 35.0%
GCATCAGCTGAAATAAATTG+CGG - Chr4:2208691-2208710 MsG0480018250.01.T01:intron 35.0%
GTCCATAACAGGATTAACAA+TGG + Chr4:2207810-2207829 None:intergenic 35.0%
TAACTGTGATAGGAAGAAGA+TGG - Chr4:2207365-2207384 MsG0480018250.01.T01:CDS 35.0%
TACATTATGATTCCGATGGA+GGG - Chr4:2209590-2209609 MsG0480018250.01.T01:CDS 35.0%
TATAGGATGTTGTTCATCAC+TGG + Chr4:2206983-2207002 None:intergenic 35.0%
TATGAGCAATGGAAATGAGA+TGG - Chr4:2207035-2207054 MsG0480018250.01.T01:CDS 35.0%
TCAATGAAGCTAATCTCTGA+GGG + Chr4:2208094-2208113 None:intergenic 35.0%
TCTCATTTCCATTGCTCATA+TGG + Chr4:2207035-2207054 None:intergenic 35.0%
TTACATTATGATTCCGATGG+AGG - Chr4:2209589-2209608 MsG0480018250.01.T01:CDS 35.0%
TTCGTAAAGAAGTAGCACTA+AGG - Chr4:2208171-2208190 MsG0480018250.01.T01:intron 35.0%
TTTCAACTCATGTCAGTTGT+AGG - Chr4:2208907-2208926 MsG0480018250.01.T01:intron 35.0%
! AACTGTATACAAGAGTGCAA+AGG + Chr4:2209752-2209771 None:intergenic 35.0%
! CAGCTTACTTTGTCTTTTCA+GGG - Chr4:2207189-2207208 MsG0480018250.01.T01:CDS 35.0%
! GTACTTTGTTGTCGATGAAT+TGG - Chr4:2207626-2207645 MsG0480018250.01.T01:intron 35.0%
! GTTATGTGCCTTTTTGTGAA+AGG - Chr4:2209680-2209699 MsG0480018250.01.T01:CDS 35.0%
! GTTTTTGCTGGTCAAATATC+TGG - Chr4:2208016-2208035 MsG0480018250.01.T01:CDS 35.0%
! TCAGCTTACTTTGTCTTTTC+AGG - Chr4:2207188-2207207 MsG0480018250.01.T01:CDS 35.0%
! TCTAAAATCAAACCCTTTGC+AGG + Chr4:2207838-2207857 None:intergenic 35.0%
! TTATTTTCGTCCGGAGAAAT+TGG + Chr4:2207956-2207975 None:intergenic 35.0%
!! GTTCGATTGATAGTTTTTGC+TGG - Chr4:2208004-2208023 MsG0480018250.01.T01:CDS 35.0%
!! TAATCTTAGGTGTCATTGCT+AGG - Chr4:2207871-2207890 MsG0480018250.01.T01:intron 35.0%
!! TGGCTCATTTTTGAACAAGA+GGG - Chr4:2208778-2208797 MsG0480018250.01.T01:intron 35.0%
!! TTTTGGAGATTTTGATCGAG+TGG - Chr4:2209716-2209735 MsG0480018250.01.T01:CDS 35.0%
AAGATACCGTGTAAGTTCAC+TGG - Chr4:2208758-2208777 MsG0480018250.01.T01:intron 40.0%
AATGAGCCAGTGAACTTACA+CGG + Chr4:2208767-2208786 None:intergenic 40.0%
ACAGGATACATGGGAAGTAA+TGG - Chr4:2207560-2207579 MsG0480018250.01.T01:intron 40.0%
AGAAATTGGCATGGAAGGTA+AGG + Chr4:2207942-2207961 None:intergenic 40.0%
ATTCCATGAAACAAGGGACA+TGG - Chr4:2209615-2209634 MsG0480018250.01.T01:CDS 40.0%
CAATGCTTGTGGACTTATGT+GGG - Chr4:2208998-2209017 MsG0480018250.01.T01:intron 40.0%
CAATTATAACACACGCCTCA+AGG + Chr4:2207763-2207782 None:intergenic 40.0%
CCGGGTATTACTACATTACT+TGG - Chr4:2207976-2207995 MsG0480018250.01.T01:intron 40.0%
CTGTACTACTGTTATTGGGA+GGG - Chr4:2207900-2207919 MsG0480018250.01.T01:intron 40.0%
GATGTTTCTCTTGCCAACAT+AGG - Chr4:2209464-2209483 MsG0480018250.01.T01:intron 40.0%
GGTGAAATCCACTCTAACAA+TGG - Chr4:2207111-2207130 MsG0480018250.01.T01:CDS 40.0%
GGTTTGACGGTAGACAATAA+TGG - Chr4:2208724-2208743 MsG0480018250.01.T01:intron 40.0%
TAGATTTCGTGAAAAGCGGA+AGG - Chr4:2208115-2208134 MsG0480018250.01.T01:intron 40.0%
TCTGTACTACTGTTATTGGG+AGG - Chr4:2207899-2207918 MsG0480018250.01.T01:intron 40.0%
TGGACTTATGTGGGCAAATA+AGG - Chr4:2209007-2209026 MsG0480018250.01.T01:intron 40.0%
TGGACTTGGCAGATGTAAAT+TGG + Chr4:2208657-2208676 None:intergenic 40.0%
TTTCTCCGGACGAAAATAAC+CGG - Chr4:2207957-2207976 MsG0480018250.01.T01:intron 40.0%
! AAGAGTGCAAAGGAGATGAT+TGG + Chr4:2209742-2209761 None:intergenic 40.0%
! AGGCACAGTTGTTTGTTGAA+AGG + Chr4:2209297-2209316 None:intergenic 40.0%
! ATCTCTAAGCACTGTCTGAT+TGG + Chr4:2209544-2209563 None:intergenic 40.0%
! TATGGACTATTCCCTGCAAA+GGG - Chr4:2207823-2207842 MsG0480018250.01.T01:intron 40.0%
! TTATGGACTATTCCCTGCAA+AGG - Chr4:2207822-2207841 MsG0480018250.01.T01:intron 40.0%
!! AATACCCGGTTATTTTCGTC+CGG + Chr4:2207965-2207984 None:intergenic 40.0%
!! CTGGCTCATTTTTGAACAAG+AGG - Chr4:2208777-2208796 MsG0480018250.01.T01:intron 40.0%
!! GCCTTGCTTTTAAGGATGTT+TGG - Chr4:2207584-2207603 MsG0480018250.01.T01:intron 40.0%
!! GTAATGGAGCCTTGCTTTTA+AGG - Chr4:2207576-2207595 MsG0480018250.01.T01:intron 40.0%
!! GTATTCATGGTGTTGATTCG+CGG - Chr4:2206950-2206969 MsG0480018250.01.T01:CDS 40.0%
!! TTACACGGTATCTTGCTGTT+GGG + Chr4:2208752-2208771 None:intergenic 40.0%
ACAGAACTCCATTGGAGTGT+CGG + Chr4:2208406-2208425 None:intergenic 45.0%
ACCTTCCATGCCAATTTCTC+CGG - Chr4:2207943-2207962 MsG0480018250.01.T01:intron 45.0%
AGACTCATCAGGATTGGACT+TGG + Chr4:2208671-2208690 None:intergenic 45.0%
AGGGCGATTCCATGAAACAA+GGG - Chr4:2209609-2209628 MsG0480018250.01.T01:CDS 45.0%
ATCGAAAAGGTCCATGACTG+TGG - Chr4:2209124-2209143 MsG0480018250.01.T01:intron 45.0%
ATGCAGTTTAACACGCCTTG+AGG - Chr4:2207745-2207764 MsG0480018250.01.T01:CDS 45.0%
ATTGGCATGGAAGGTAAGGT+TGG + Chr4:2207938-2207957 None:intergenic 45.0%
CGGAACAAGTGAAGGTTTGA+CGG - Chr4:2208711-2208730 MsG0480018250.01.T01:intron 45.0%
GCAATGCTTGTGGACTTATG+TGG - Chr4:2208997-2209016 MsG0480018250.01.T01:intron 45.0%
GTGTTACGACAGAACTCCAT+TGG + Chr4:2208414-2208433 None:intergenic 45.0%
TAAACCACAGTCCACAGTCA+TGG + Chr4:2209138-2209157 None:intergenic 45.0%
TGATGCAGACTCATCAGGAT+TGG + Chr4:2208677-2208696 None:intergenic 45.0%
TGCAACCCGTGATGTTCATA+TGG + Chr4:2207012-2207031 None:intergenic 45.0%
TGCAGGGAATAGTCCATAAC+AGG + Chr4:2207821-2207840 None:intergenic 45.0%
TTCTCCGGACGAAAATAACC+GGG - Chr4:2207958-2207977 MsG0480018250.01.T01:intron 45.0%
! AAGTCCACAAGCATTGCAGA+GGG + Chr4:2208994-2209013 None:intergenic 45.0%
! CATGTCAGTTGTAGGCATTG+TGG - Chr4:2208915-2208934 MsG0480018250.01.T01:intron 45.0%
! CTACCATGTCCCTTGTTTCA+TGG + Chr4:2209621-2209640 None:intergenic 45.0%
! CTTACACGGTATCTTGCTGT+TGG + Chr4:2208753-2208772 None:intergenic 45.0%
! TAAGTCCACAAGCATTGCAG+AGG + Chr4:2208995-2209014 None:intergenic 45.0%
!! ATGAACCTTTTCTGGCGACA+CGG + Chr4:2207235-2207254 None:intergenic 45.0%
AACGGTGATTCTAACTGCGG+AGG - Chr4:2207072-2207091 MsG0480018250.01.T01:CDS 50.0%
AGAACCCTCTGCAATGCTTG+TGG - Chr4:2208987-2209006 MsG0480018250.01.T01:intron 50.0%
ATCAAGGACAGCAACCTTGC+CGG - Chr4:2209380-2209399 MsG0480018250.01.T01:intron 50.0%
GAGGGCGATTCCATGAAACA+AGG - Chr4:2209608-2209627 MsG0480018250.01.T01:CDS 50.0%
GCAAGGTTGCTGTCCTTGAT+AGG + Chr4:2209380-2209399 None:intergenic 50.0%
GGGTTGCACCATATGAGCAA+TGG - Chr4:2207024-2207043 MsG0480018250.01.T01:CDS 50.0%
TCAGCTGATGCAGACTCATC+AGG + Chr4:2208682-2208701 None:intergenic 50.0%
TCCGGAGAAATTGGCATGGA+AGG + Chr4:2207947-2207966 None:intergenic 50.0%
TTCATGGAATCGCCCTCCAT+CGG + Chr4:2209605-2209624 None:intergenic 50.0%
TTCGTCCGGAGAAATTGGCA+TGG + Chr4:2207951-2207970 None:intergenic 50.0%
! AGAAGTGCACGCCAATGATG+CGG - Chr4:2208946-2208965 MsG0480018250.01.T01:intron 50.0%
! CAAGCATTGCAGAGGGTTCT+TGG + Chr4:2208987-2209006 None:intergenic 50.0%
! CAGAACTCCATTGGAGTGTC+GGG + Chr4:2208405-2208424 None:intergenic 50.0%
! TGAGGGACGCTGAGTTTTTC+TGG + Chr4:2208077-2208096 None:intergenic 50.0%
! TGGAGAATTATGTGCCGGCA+AGG + Chr4:2209397-2209416 None:intergenic 50.0%
!! AAGCACTGTCTGATTGGCCT+CGG + Chr4:2209538-2209557 None:intergenic 50.0%
!! AGAACTCCATTGGAGTGTCG+GGG + Chr4:2208404-2208423 None:intergenic 50.0%
AATGGACCCCGACACTCCAA+TGG - Chr4:2208395-2208414 MsG0480018250.01.T01:intron 55.0%
CAATGTTGTCGGTCATGGCG+TGG + Chr4:2208567-2208586 None:intergenic 55.0%
GAGCGCTTAGGGACCTATCA+AGG - Chr4:2209364-2209383 MsG0480018250.01.T01:intron 55.0%
GGCATGGAAGGTAAGGTTGG+AGG + Chr4:2207935-2207954 None:intergenic 55.0%
GTCGGTCATGGCGTGGATTT+AGG + Chr4:2208560-2208579 None:intergenic 55.0%
! AGGTCCATGACTGTGGACTG+TGG - Chr4:2209131-2209150 MsG0480018250.01.T01:intron 55.0%
!! TGAACCACAGGGAGCGCTTA+GGG - Chr4:2209353-2209372 MsG0480018250.01.T01:intron 55.0%
!! TTGAACCACAGGGAGCGCTT+AGG - Chr4:2209352-2209371 MsG0480018250.01.T01:intron 55.0%
ATGATGCGGCGTGGACCTGA+AGG - Chr4:2208960-2208979 MsG0480018250.01.T01:intron 60.0%
CAGAGGGTTCTTGGCCCTTC+AGG + Chr4:2208978-2208997 None:intergenic 60.0%
CGACTCCGTGTCGCCAGAAA+AGG - Chr4:2207227-2207246 MsG0480018250.01.T01:intron 60.0%
CTGCGGAGGAAGTGAGACTG+CGG - Chr4:2207086-2207105 MsG0480018250.01.T01:CDS 60.0%
GGAGGAAGTGAGACTGCGGA+AGG - Chr4:2207090-2207109 MsG0480018250.01.T01:CDS 60.0%
TCAGGTCCACGCCGCATCAT+TGG + Chr4:2208960-2208979 None:intergenic 60.0%
TGATGCGGCGTGGACCTGAA+GGG - Chr4:2208961-2208980 MsG0480018250.01.T01:intron 60.0%
AGGTCCCTAAGCGCTCCCTG+TGG + Chr4:2209360-2209379 None:intergenic 65.0%
TGCACGCCAATGATGCGGCG+TGG - Chr4:2208951-2208970 MsG0480018250.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 2206943 2209816 2206943 ID=MsG0480018250.01;Name=MsG0480018250.01
Chr4 mRNA 2206943 2209816 2206943 ID=MsG0480018250.01.T01;Parent=MsG0480018250.01;Name=MsG0480018250.01.T01;_AED=0.34;_eAED=0.38;_QI=0|0|0|1|1|1|7|0|386
Chr4 exon 2209511 2209816 2209511 ID=MsG0480018250.01.T01:exon:1137;Parent=MsG0480018250.01.T01
Chr4 exon 2208780 2208866 2208780 ID=MsG0480018250.01.T01:exon:1136;Parent=MsG0480018250.01.T01
Chr4 exon 2208567 2208700 2208567 ID=MsG0480018250.01.T01:exon:1135;Parent=MsG0480018250.01.T01
Chr4 exon 2207992 2208123 2207992 ID=MsG0480018250.01.T01:exon:1134;Parent=MsG0480018250.01.T01
Chr4 exon 2207731 2207836 2207731 ID=MsG0480018250.01.T01:exon:1133;Parent=MsG0480018250.01.T01
Chr4 exon 2207293 2207396 2207293 ID=MsG0480018250.01.T01:exon:1132;Parent=MsG0480018250.01.T01
Chr4 exon 2206943 2207234 2206943 ID=MsG0480018250.01.T01:exon:1131;Parent=MsG0480018250.01.T01
Chr4 CDS 2209511 2209816 2209511 ID=MsG0480018250.01.T01:cds;Parent=MsG0480018250.01.T01
Chr4 CDS 2208780 2208866 2208780 ID=MsG0480018250.01.T01:cds;Parent=MsG0480018250.01.T01
Chr4 CDS 2208567 2208700 2208567 ID=MsG0480018250.01.T01:cds;Parent=MsG0480018250.01.T01
Chr4 CDS 2207992 2208123 2207992 ID=MsG0480018250.01.T01:cds;Parent=MsG0480018250.01.T01
Chr4 CDS 2207731 2207836 2207731 ID=MsG0480018250.01.T01:cds;Parent=MsG0480018250.01.T01
Chr4 CDS 2207293 2207396 2207293 ID=MsG0480018250.01.T01:cds;Parent=MsG0480018250.01.T01
Chr4 CDS 2206943 2207234 2206943 ID=MsG0480018250.01.T01:cds;Parent=MsG0480018250.01.T01
Gene Sequence

>MsG0480018250.01.T01

ATGGATGGTATTCATGGTGTTGATTCGCGGATGCAGACCAGTGATGAACAACATCCTATACATATGCCATATGAACATCACGGGTTGCACCATATGAGCAATGGAAATGAGATGGATGACGATCAAAATAACGGTGATTCTAACTGCGGAGGAAGTGAGACTGCGGAAGGTGAAATCCACTCTAACAATGGAAATCTTCATGACAGTCACACTTTAATAATGGATCAAGGGAATGATATTGGAGATCAGCTTACTTTGTCTTTTCAGGGACAAGTTTATGTCTTCGACTCCGTGTCGCCAGAAAAGGTTCAATCTGTACTACTGTTATTGGGAGGGCGTGAAGTACCTCCAACCTTACCTTCCATGCCAATTTCTCCGGACGAAAATAACCGGGGATTTATTGGTACGCCAGAAAAACTCAGCGTCCCTCAGAGATTAGCTTCATTGATTAGATTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATTCGTTATACTGTTCGTAAAGAAGTAGCACTAAGGATGCAAAGAAATAAAGGCCAATTTACATCTGCCAAGTCCAATCCTGATGAGTCTGCATCAGCTGAAATAAATTGCGGAACAAGTGAAGGTTTGACGGTAGACAATAATGGATCCCAACAGCAAGATACCGTTTGTAGGCATTGTGGCATCAGTGAGAAGTGCACGCCAATGATGCGGCGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAGCGCTTAGGGACCTATCAAGGACAGCAACCTTGCCGGCACATAATTCTCCATTAAACAAGAATGAGGTTGAAAATCATGCATTCATTAAATTTATTTTGATAATAATAATTCCGAGGCCAATCAGACAGTGCTTAGAGATGCTGCTGAACCCTTATGACAGACCTTTACATTATGATTCCGATGGAGGGCGATTCCATGAAACAAGGGACATGGTAGAGAGTGCTTTTCACTTGATGAGAAATTATAGGAGGGCTAGTTATGTGCCTTTTTGTGAAAGGTTTAAGCTAGTTCTTTTGGAGATTTTGATCGAGTGGCCAATCATCTCCTTTGCACTCTTGTATACAGTTTTATATACACTGTCGGCAGCTGCAGATGATACAGTTGCATTTTGA
Protein sequence

>MsG0480018250.01.T01

MDGIHGVDSRMQTSDEQHPIHMPYEHHGLHHMSNGNEMDDDQNNGDSNCGGSETAEGEIHSNNGNLHDSHTLIMDQGNDIGDQLTLSFQGQVYVFDSVSPEKVQSVLLLLGGREVPPTLPSMPISPDENNRGFIGTPEKLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNPDESASAEINCGTSEGLTVDNNGSQQQDTVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGALRDLSRTATLPAHNSPLNKNEVENHAFIKFILIIIIPRPIRQCLEMLLNPYDRPLHYDSDGGRFHETRDMVESAFHLMRNYRRASYVPFCERFKLVLLEILIEWPIISFALLYTVLYTLSAAADDTVAF*