AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018245.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018245.01.T01 MTR_3g100050 57.534 219 71 5 54 262 35 241 1.57e-68 219
MsG0480018245.01.T01 MTR_5g066510 47.857 280 85 9 15 271 34 275 3.11e-64 207
MsG0480018245.01.T01 MTR_3g100040 55.249 181 76 1 83 263 69 244 1.48e-61 202
MsG0480018245.01.T01 MTR_4g093730 51.741 201 81 4 81 275 41 231 1.38e-57 191
MsG0480018245.01.T01 MTR_3g100040 54.483 145 61 1 119 263 1 140 1.31e-46 160
MsG0480018245.01.T01 MTR_4g008070 87.342 79 10 0 177 255 1 79 6.66e-45 150
MsG0480018245.01.T01 MTR_4g008090 93.421 76 4 1 102 176 12 87 2.63e-41 142
MsG0480018245.01.T01 MTR_5g066510 46.535 202 72 7 15 215 34 200 2.47e-36 131
MsG0480018245.01.T01 MTR_3g060200 40.000 95 51 2 169 263 4 92 2.12e-14 73.9
MsG0480018245.01.T01 MTR_3g060200 40.000 95 51 2 169 263 4 92 4.32e-14 73.6
MsG0480018245.01.T01 MTR_3g060200 40.000 95 51 2 169 263 4 92 4.56e-14 73.6
MsG0480018245.01.T01 MTR_3g060200 40.000 95 51 2 169 263 4 92 4.66e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018245.01.T01 AT1G51600 61.356 295 110 3 1 292 1 294 1.26e-123 359
MsG0480018245.01.T01 AT1G51600 61.356 295 110 3 1 292 1 294 1.26e-123 359
MsG0480018245.01.T01 AT3G21175 62.544 283 99 3 1 281 1 278 6.72e-117 342
MsG0480018245.01.T01 AT3G21175 62.105 285 99 4 1 281 1 280 5.94e-115 337
MsG0480018245.01.T01 AT3G21175 60.185 216 82 1 1 216 1 212 1.15e-81 249
MsG0480018245.01.T01 AT4G24470 51.269 197 87 3 68 263 68 256 1.18e-59 196
MsG0480018245.01.T01 AT4G24470 51.269 197 87 3 68 263 68 256 1.18e-59 196
MsG0480018245.01.T01 AT4G24470 51.269 197 87 3 68 263 68 256 1.46e-59 196

Find 94 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCTCATTCTTGTTTAA+TGG 0.137752 4:+2118279 None:intergenic
TCAATCTGTACTACTGTTAT+TGG 0.235229 4:-2119797 MsG0480018245.01.T01:CDS
TGGACTTATGTGGGCAAATA+AGG 0.243603 4:-2118686 MsG0480018245.01.T01:intron
CTACCATGTCCCTTGTTTCA+TGG 0.259352 4:+2118075 None:intergenic
TGGACTTGGCAGATGTAAAT+TGG 0.265787 4:+2119038 None:intergenic
AGCTTAAACCTTTCACAAAA+AGG 0.270333 4:+2118005 None:intergenic
CAGAGGGTTCTTGGCCCTTC+AGG 0.272302 4:+2118718 None:intergenic
CAAGCATTGCAGAGGGTTCT+TGG 0.288221 4:+2118709 None:intergenic
TTCACTTGATGAGAAATTAT+AGG 0.305903 4:-2118043 MsG0480018245.01.T01:CDS
TCTCATTTCCATTGCTCATA+TGG 0.307609 4:+2120660 None:intergenic
AAGGTTTAAGCTAGTTCTTT+TGG 0.307653 4:-2117994 MsG0480018245.01.T01:CDS
TTTAGGATGCAAAGAAATAA+AGG 0.321682 4:-2119061 MsG0480018245.01.T01:intron
TGACAGTCACACTTTAATAA+TGG 0.327842 4:-2120549 MsG0480018245.01.T01:CDS
ATGGATCAAGGGAATGATAT+TGG 0.357672 4:-2120530 MsG0480018245.01.T01:CDS
CAATCTGTACTACTGTTATT+GGG 0.360369 4:-2119796 MsG0480018245.01.T01:CDS
TCAGGTCCACGCCGCATCAT+TGG 0.388420 4:+2118736 None:intergenic
CGACTCCGTGTCGCCAGAAA+AGG 0.398718 4:-2120465 MsG0480018245.01.T01:intron
TAATGTAAAGGTCTGTCATA+AGG 0.412800 4:+2118119 None:intergenic
ATCAAGGACAGCAACCTTGC+CGG 0.414254 4:-2118313 MsG0480018245.01.T01:CDS
ATCTCTAAGCACTGTCTGAT+TGG 0.416220 4:+2118152 None:intergenic
ACCTTCCATGCCAATTTCTC+CGG 0.420398 4:-2119749 MsG0480018245.01.T01:CDS
CAGTACATGGATGGTATTCA+TGG 0.423116 4:-2120755 None:intergenic
TTTCTCCGGACGAAAATAAC+CGG 0.434754 4:-2119735 MsG0480018245.01.T01:CDS
TGAACCACAGGGAGCGCTTA+GGG 0.440040 4:-2118340 MsG0480018245.01.T01:intron
TCAGCTGATGCAGACTCATC+AGG 0.441839 4:+2119013 None:intergenic
GCAAGGTTGCTGTCCTTGAT+AGG 0.445283 4:+2118316 None:intergenic
ATTGGCATGGAAGGTAAGGT+TGG 0.459291 4:+2119757 None:intergenic
CACACTTTAATAATGGATCA+AGG 0.470319 4:-2120542 MsG0480018245.01.T01:CDS
TTGAACCACAGGGAGCGCTT+AGG 0.472073 4:-2118341 MsG0480018245.01.T01:intron
TTACACGGTATCTTGCTGTT+GGG 0.489725 4:+2118943 None:intergenic
GCAATGCTTGTGGACTTATG+TGG 0.493003 4:-2118696 MsG0480018245.01.T01:CDS
AATGTAAAGGTCTGTCATAA+GGG 0.495203 4:+2118120 None:intergenic
CGGAACAAGTGAAGGTTTGA+CGG 0.497532 4:-2118981 MsG0480018245.01.T01:CDS
GAAGATTTCCATTGTTAGAG+TGG 0.498104 4:+2120573 None:intergenic
CTTACACGGTATCTTGCTGT+TGG 0.501886 4:+2118942 None:intergenic
GGTTTGACGGTAGACAATAA+TGG 0.505445 4:-2118968 MsG0480018245.01.T01:CDS
AAGCACTGTCTGATTGGCCT+CGG 0.507209 4:+2118158 None:intergenic
AAGAGTGCAAAGGAGATGAT+TGG 0.514668 4:+2117954 None:intergenic
TATAGGATGTTGTTCATCAC+TGG 0.518790 4:+2120712 None:intergenic
TGTTCATATGGCATATGTAT+AGG 0.519920 4:+2120695 None:intergenic
AGACTCATCAGGATTGGACT+TGG 0.520027 4:+2119024 None:intergenic
TACATTATGATTCCGATGGA+GGG 0.521431 4:-2118103 MsG0480018245.01.T01:CDS
AGAAATTGGCATGGAAGGTA+AGG 0.522598 4:+2119753 None:intergenic
TTCTCCATTAAACAAGAATG+AGG 0.532237 4:-2118283 MsG0480018245.01.T01:CDS
TGGCTCTTCCAGTACATGGA+TGG 0.532259 4:-2120764 None:intergenic
CCTTTACATTATGATTCCGA+TGG 0.532572 4:-2118107 MsG0480018245.01.T01:CDS
CCATCGGAATCATAATGTAA+AGG 0.533858 4:+2118107 None:intergenic
TGCAACCCGTGATGTTCATA+TGG 0.534256 4:+2120683 None:intergenic
ATGATGCGGCGTGGACCTGA+AGG 0.535411 4:-2118733 MsG0480018245.01.T01:CDS
AGAACCCTCTGCAATGCTTG+TGG 0.537519 4:-2118706 MsG0480018245.01.T01:CDS
TGATGCAGACTCATCAGGAT+TGG 0.539391 4:+2119018 None:intergenic
GGTGAAATCCACTCTAACAA+TGG 0.539967 4:-2120581 MsG0480018245.01.T01:CDS
GTATTCATGGTGTTGATTCG+CGG 0.540049 4:-2120742 MsG0480018245.01.T01:CDS
ATAAATTGCGGAACAAGTGA+AGG 0.554129 4:-2118989 MsG0480018245.01.T01:CDS
TCCGGAGAAATTGGCATGGA+AGG 0.555042 4:+2119748 None:intergenic
TTACATTATGATTCCGATGG+AGG 0.555804 4:-2118104 MsG0480018245.01.T01:CDS
TTCATGGAATCGCCCTCCAT+CGG 0.560219 4:+2118091 None:intergenic
GAGCGCTTAGGGACCTATCA+AGG 0.562951 4:-2118329 MsG0480018245.01.T01:CDS
ACTTGATGAGAAATTATAGG+AGG 0.564643 4:-2118040 MsG0480018245.01.T01:CDS
TCAATGAAGCTAATCTCTGA+GGG 0.569675 4:+2119601 None:intergenic
TGGAGAATTATGTGCCGGCA+AGG 0.571633 4:+2118299 None:intergenic
ATGGATGACGATCAAAATAA+CGG 0.572622 4:-2120638 MsG0480018245.01.T01:CDS
GGCATGGAAGGTAAGGTTGG+AGG 0.573711 4:+2119760 None:intergenic
ACACTTTAATAATGGATCAA+GGG 0.577449 4:-2120541 MsG0480018245.01.T01:CDS
CAATGCTTGTGGACTTATGT+GGG 0.580586 4:-2118695 MsG0480018245.01.T01:CDS
TTTAATGGAGAATTATGTGC+CGG 0.581798 4:+2118294 None:intergenic
TAGATTTCGTGAAAAGCGGA+AGG 0.584600 4:-2119577 MsG0480018245.01.T01:CDS
ATATGCCATATGAACATCAC+GGG 0.590381 4:-2120688 MsG0480018245.01.T01:CDS
TTCGTAAAGAAGTAGCACTA+AGG 0.592761 4:-2119521 MsG0480018245.01.T01:intron
TGATTAGATTTCGTGAAAAG+CGG 0.593015 4:-2119581 MsG0480018245.01.T01:CDS
ATCAATGAAGCTAATCTCTG+AGG 0.598501 4:+2119600 None:intergenic
TGATGCGGCGTGGACCTGAA+GGG 0.602634 4:-2118732 MsG0480018245.01.T01:CDS
TATGAGCAATGGAAATGAGA+TGG 0.602965 4:-2120657 MsG0480018245.01.T01:CDS
GGGTTGCACCATATGAGCAA+TGG 0.606328 4:-2120668 MsG0480018245.01.T01:CDS
CTTGATGAGAAATTATAGGA+GGG 0.607907 4:-2118039 MsG0480018245.01.T01:CDS
CTGTACTACTGTTATTGGGA+GGG 0.609779 4:-2119792 MsG0480018245.01.T01:CDS
CATATGCCATATGAACATCA+CGG 0.625092 4:-2120689 MsG0480018245.01.T01:CDS
AGAAGTGCACGCCAATGATG+CGG 0.629029 4:-2118747 MsG0480018245.01.T01:CDS
TCTGTACTACTGTTATTGGG+AGG 0.631795 4:-2119793 MsG0480018245.01.T01:CDS
AACGGTGATTCTAACTGCGG+AGG 0.632002 4:-2120620 MsG0480018245.01.T01:CDS
AACTGTATACAAGAGTGCAA+AGG 0.641474 4:+2117944 None:intergenic
CATGTCAGTTGTAGGCATTG+TGG 0.641895 4:-2118778 MsG0480018245.01.T01:intron
GCATCAGCTGAAATAAATTG+CGG 0.642078 4:-2119001 MsG0480018245.01.T01:CDS
GAGGGCGATTCCATGAAACA+AGG 0.645633 4:-2118085 MsG0480018245.01.T01:CDS
TTCGTCCGGAGAAATTGGCA+TGG 0.650275 4:+2119744 None:intergenic
ATTCCATGAAACAAGGGACA+TGG 0.654421 4:-2118078 MsG0480018245.01.T01:CDS
TAAGTCCACAAGCATTGCAG+AGG 0.655536 4:+2118701 None:intergenic
TTCTCCGGACGAAAATAACC+GGG 0.655712 4:-2119734 MsG0480018245.01.T01:intron
TGCACGCCAATGATGCGGCG+TGG 0.659677 4:-2118742 MsG0480018245.01.T01:CDS
GGAGGAAGTGAGACTGCGGA+AGG 0.665011 4:-2120602 MsG0480018245.01.T01:CDS
AAGTCCACAAGCATTGCAGA+GGG 0.674174 4:+2118702 None:intergenic
AATAACGGTGATTCTAACTG+CGG 0.691144 4:-2120623 MsG0480018245.01.T01:CDS
AGGGCGATTCCATGAAACAA+GGG 0.697086 4:-2118084 MsG0480018245.01.T01:CDS
CTGCGGAGGAAGTGAGACTG+CGG 0.700049 4:-2120606 MsG0480018245.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATTTATAATAATCTT+AGG - Chr4:2118814-2118833 MsG0480018245.01.T01:intron 10.0%
!! GTATTCTAATCTATATATTA+TGG - Chr4:2119772-2119791 MsG0480018245.01.T01:CDS 15.0%
!!! ATTTTCAGAAATAATGAAAA+CGG - Chr4:2118365-2118384 MsG0480018245.01.T01:intron 15.0%
!!! TTCATTTTAAATTTCTAACA+AGG - Chr4:2118275-2118294 MsG0480018245.01.T01:CDS 15.0%
!! AAACGAATAAATCAAAAAGA+AGG + Chr4:2120272-2120291 None:intergenic 20.0%
!! ATATAGAAAAACAATGTTGT+CGG + Chr4:2119534-2119553 None:intergenic 20.0%
!! CATACTATCTATGATAAAAT+AGG + Chr4:2118684-2118703 None:intergenic 20.0%
!! TATATATATGCTTATGAACT+AGG + Chr4:2118655-2118674 None:intergenic 20.0%
!! TCATTTCAACTAATAATCAT+AGG + Chr4:2119304-2119323 None:intergenic 20.0%
!!! ACATTTTATTAGGGATTTAT+TGG - Chr4:2119003-2119022 MsG0480018245.01.T01:CDS 20.0%
!!! ATAATTTTGTATAGCAACAT+AGG + Chr4:2120039-2120058 None:intergenic 20.0%
!!! TCATTTTCGTTTAGAATTTT+CGG + Chr4:2118435-2118454 None:intergenic 20.0%
!!! TTGACTTTTTAAAACATTTC+TGG - Chr4:2118392-2118411 MsG0480018245.01.T01:intron 20.0%
! AAAATGAAAACAGGATACAT+GGG - Chr4:2118507-2118526 MsG0480018245.01.T01:intron 25.0%
! AATTCTAAACGAAAATGATG+AGG - Chr4:2118437-2118456 MsG0480018245.01.T01:intron 25.0%
! ACTATCTATGATAAAATAGG+AGG + Chr4:2118681-2118700 None:intergenic 25.0%
! ATTCTAAACGAAAATGATGA+GGG - Chr4:2118438-2118457 MsG0480018245.01.T01:intron 25.0%
! CTAATACGAAAAACTTCTTT+AGG - Chr4:2119570-2119589 MsG0480018245.01.T01:CDS 25.0%
! CTAGAAGATTATCATACATA+CGG + Chr4:2119392-2119411 None:intergenic 25.0%
! CTATCTATGATAAAATAGGA+GGG + Chr4:2118680-2118699 None:intergenic 25.0%
! GGTTGAAATTCTTCAAAATA+AGG + Chr4:2119823-2119842 None:intergenic 25.0%
! TCGACATATCAATGATAAAA+TGG + Chr4:2120123-2120142 None:intergenic 25.0%
! TTCACTTGATGAGAAATTAT+AGG - Chr4:2120605-2120624 MsG0480018245.01.T01:CDS 25.0%
!! GCTCATGAAACATTTTATTA+GGG - Chr4:2118994-2119013 MsG0480018245.01.T01:CDS 25.0%
!! TTTAGGATGCAAAGAAATAA+AGG - Chr4:2119587-2119606 MsG0480018245.01.T01:CDS 25.0%
!! TTTTCAGAATAATAATTCCG+AGG - Chr4:2120473-2120492 MsG0480018245.01.T01:CDS 25.0%
!! TTTTTCGTATTAGTTAGCAA+GGG + Chr4:2119563-2119582 None:intergenic 25.0%
!!! ACACTTTAATAATGGATCAA+GGG - Chr4:2118107-2118126 MsG0480018245.01.T01:CDS 25.0%
!!! ATATATTATGGTTGACTTGA+TGG - Chr4:2119784-2119803 MsG0480018245.01.T01:CDS 25.0%
!!! TACAGTTTTATATACACTGT+CGG - Chr4:2120720-2120739 MsG0480018245.01.T01:CDS 25.0%
!!! TTTTCATTTTTTGAACCACA+GGG - Chr4:2120297-2120316 MsG0480018245.01.T01:intron 25.0%
AAAAGATAGCAATTGACATG+AGG + Chr4:2120009-2120028 None:intergenic 30.0%
AAGAAAGACTATTTCAGTGT+AGG + Chr4:2119844-2119863 None:intergenic 30.0%
AATGTAAAGGTCTGTCATAA+GGG + Chr4:2120531-2120550 None:intergenic 30.0%
ACTTGATGAGAAATTATAGG+AGG - Chr4:2120608-2120627 MsG0480018245.01.T01:CDS 30.0%
AGCTTAAACCTTTCACAAAA+AGG + Chr4:2120646-2120665 None:intergenic 30.0%
ATATATGCTTATGAACTAGG+AGG + Chr4:2118652-2118671 None:intergenic 30.0%
ATCCATTGTTAATCCTGTTA+TGG - Chr4:2118761-2118780 MsG0480018245.01.T01:CDS 30.0%
ATCTGTTTACGATGATGAAT+TGG + Chr4:2120172-2120191 None:intergenic 30.0%
ATGGATGACGATCAAAATAA+CGG - Chr4:2118010-2118029 MsG0480018245.01.T01:CDS 30.0%
ATGTAGTGAATAACTGTGAT+AGG - Chr4:2118311-2118330 MsG0480018245.01.T01:CDS 30.0%
CAATCTGTACTACTGTTATT+GGG - Chr4:2118852-2118871 MsG0480018245.01.T01:intron 30.0%
CAGGAAACATAGAGATTAAA+TGG - Chr4:2119333-2119352 MsG0480018245.01.T01:intron 30.0%
CATTCAACTTGATTCAGATT+TGG - Chr4:2120193-2120212 MsG0480018245.01.T01:intron 30.0%
CTTGATGAGAAATTATAGGA+GGG - Chr4:2120609-2120628 MsG0480018245.01.T01:CDS 30.0%
GAAAATGAAAACAGGATACA+TGG - Chr4:2118506-2118525 MsG0480018245.01.T01:intron 30.0%
GTATTACTACATTACTTGGT+TGG - Chr4:2118936-2118955 MsG0480018245.01.T01:intron 30.0%
GTTGAAATGAAACTGAAAAC+AGG - Chr4:2119314-2119333 MsG0480018245.01.T01:intron 30.0%
GTTGAAGTGAAAATGAAAAC+AGG - Chr4:2118498-2118517 MsG0480018245.01.T01:intron 30.0%
TAATGTAAAGGTCTGTCATA+AGG + Chr4:2120532-2120551 None:intergenic 30.0%
TATATGCTTATGAACTAGGA+GGG + Chr4:2118651-2118670 None:intergenic 30.0%
TCAATCTGTACTACTGTTAT+TGG - Chr4:2118851-2118870 MsG0480018245.01.T01:intron 30.0%
TGACAGTCACACTTTAATAA+TGG - Chr4:2118099-2118118 MsG0480018245.01.T01:CDS 30.0%
TGATTAGATTTCGTGAAAAG+CGG - Chr4:2119067-2119086 MsG0480018245.01.T01:intron 30.0%
TGTCCGAAAAATAATCGAAA+AGG - Chr4:2120066-2120085 MsG0480018245.01.T01:intron 30.0%
TGTTCATATGGCATATGTAT+AGG + Chr4:2117956-2117975 None:intergenic 30.0%
TTCTCCATTAAACAAGAATG+AGG - Chr4:2120365-2120384 MsG0480018245.01.T01:intron 30.0%
TTTAATGGAGAATTATGTGC+CGG + Chr4:2120357-2120376 None:intergenic 30.0%
! GACTAACTTTTCTTCTAACA+TGG - Chr4:2118622-2118641 MsG0480018245.01.T01:intron 30.0%
! GGCTCATGAAACATTTTATT+AGG - Chr4:2118993-2119012 MsG0480018245.01.T01:CDS 30.0%
! GTTTTTCGTATTAGTTAGCA+AGG + Chr4:2119564-2119583 None:intergenic 30.0%
! TCAACCTCATTCTTGTTTAA+TGG + Chr4:2120372-2120391 None:intergenic 30.0%
!! AAGGTTTAAGCTAGTTCTTT+TGG - Chr4:2120654-2120673 MsG0480018245.01.T01:CDS 30.0%
!! CAAATCTGAATCAAGTTGAA+TGG + Chr4:2120195-2120214 None:intergenic 30.0%
!! CACACTTTAATAATGGATCA+AGG - Chr4:2118106-2118125 MsG0480018245.01.T01:CDS 30.0%
!! GGACCTTTTCGATTATTTTT+CGG + Chr4:2120072-2120091 None:intergenic 30.0%
!!! ATAAGTTGATGAACCTTTTC+TGG + Chr4:2118199-2118218 None:intergenic 30.0%
!!! ATTTGGCTTTTATACTCGAA+TGG - Chr4:2120210-2120229 MsG0480018245.01.T01:intron 30.0%
!!! GATGTTTGGTTTTTCTTTTC+TGG - Chr4:2118554-2118573 MsG0480018245.01.T01:intron 30.0%
!!! GTTTTCATTTTTTGAACCAC+AGG - Chr4:2120296-2120315 MsG0480018245.01.T01:intron 30.0%
AAAAACAATGTTGTCGGTCA+TGG + Chr4:2119528-2119547 None:intergenic 35.0%
AAAGAAGTAGCACTAAGGTA+TGG - Chr4:2119132-2119151 MsG0480018245.01.T01:intron 35.0%
AATAACGGTGATTCTAACTG+CGG - Chr4:2118025-2118044 MsG0480018245.01.T01:CDS 35.0%
ACCAAACATCCTTAAAAGCA+AGG + Chr4:2118544-2118563 None:intergenic 35.0%
ATAAATTGCGGAACAAGTGA+AGG - Chr4:2119659-2119678 MsG0480018245.01.T01:intron 35.0%
ATATGCCATATGAACATCAC+GGG - Chr4:2117960-2117979 MsG0480018245.01.T01:CDS 35.0%
ATCAATGAAGCTAATCTCTG+AGG + Chr4:2119051-2119070 None:intergenic 35.0%
ATGGATCAAGGGAATGATAT+TGG - Chr4:2118118-2118137 MsG0480018245.01.T01:CDS 35.0%
ATGTGGGCAAATAAGGTAAA+TGG - Chr4:2119969-2119988 MsG0480018245.01.T01:intron 35.0%
CATATGCCATATGAACATCA+CGG - Chr4:2117959-2117978 MsG0480018245.01.T01:CDS 35.0%
CCAAGTAATGTAGTAATACC+CGG + Chr4:2118935-2118954 None:intergenic 35.0%
CCATCGGAATCATAATGTAA+AGG + Chr4:2120544-2120563 None:intergenic 35.0%
CCTTTACATTATGATTCCGA+TGG - Chr4:2120541-2120560 MsG0480018245.01.T01:CDS 35.0%
CTAAAATCAAACCCTTTGCA+GGG + Chr4:2118793-2118812 None:intergenic 35.0%
GAAGATCTAAGTTCCTATGT+TGG + Chr4:2120435-2120454 None:intergenic 35.0%
GAAGATTTCCATTGTTAGAG+TGG + Chr4:2118078-2118097 None:intergenic 35.0%
GCATCAGCTGAAATAAATTG+CGG - Chr4:2119647-2119666 MsG0480018245.01.T01:intron 35.0%
GTCCATAACAGGATTAACAA+TGG + Chr4:2118766-2118785 None:intergenic 35.0%
TAACTGTGATAGGAAGAAGA+TGG - Chr4:2118321-2118340 MsG0480018245.01.T01:CDS 35.0%
TACATTATGATTCCGATGGA+GGG - Chr4:2120545-2120564 MsG0480018245.01.T01:CDS 35.0%
TATAGGATGTTGTTCATCAC+TGG + Chr4:2117939-2117958 None:intergenic 35.0%
TATGAGCAATGGAAATGAGA+TGG - Chr4:2117991-2118010 MsG0480018245.01.T01:CDS 35.0%
TCAATGAAGCTAATCTCTGA+GGG + Chr4:2119050-2119069 None:intergenic 35.0%
TCTCATTTCCATTGCTCATA+TGG + Chr4:2117991-2118010 None:intergenic 35.0%
TTACATTATGATTCCGATGG+AGG - Chr4:2120544-2120563 MsG0480018245.01.T01:CDS 35.0%
TTCGTAAAGAAGTAGCACTA+AGG - Chr4:2119127-2119146 MsG0480018245.01.T01:intron 35.0%
TTTCAACTCATGTCAGTTGT+AGG - Chr4:2119862-2119881 MsG0480018245.01.T01:intron 35.0%
! AACTGTATACAAGAGTGCAA+AGG + Chr4:2120707-2120726 None:intergenic 35.0%
! CAGCTTACTTTGTCTTTTCA+GGG - Chr4:2118145-2118164 MsG0480018245.01.T01:CDS 35.0%
! GTACTTTGTTGTCGATGAAT+TGG - Chr4:2118582-2118601 MsG0480018245.01.T01:intron 35.0%
! GTTATGTGCCTTTTTGTGAA+AGG - Chr4:2120635-2120654 MsG0480018245.01.T01:CDS 35.0%
! GTTTTTGCTGGTCAAATATC+TGG - Chr4:2118972-2118991 MsG0480018245.01.T01:CDS 35.0%
! TCAGCTTACTTTGTCTTTTC+AGG - Chr4:2118144-2118163 MsG0480018245.01.T01:CDS 35.0%
! TCTAAAATCAAACCCTTTGC+AGG + Chr4:2118794-2118813 None:intergenic 35.0%
! TTATTTTCGTCCGGAGAAAT+TGG + Chr4:2118912-2118931 None:intergenic 35.0%
!! GTTCGATTGATAGTTTTTGC+TGG - Chr4:2118960-2118979 MsG0480018245.01.T01:CDS 35.0%
!! TAATCTTAGGTGTCATTGCT+AGG - Chr4:2118827-2118846 MsG0480018245.01.T01:intron 35.0%
!! TGGCTCATTTTTGAACAAGA+GGG - Chr4:2119734-2119753 MsG0480018245.01.T01:intron 35.0%
!! TTTTGGAGATTTTGATCGAG+TGG - Chr4:2120671-2120690 MsG0480018245.01.T01:CDS 35.0%
AAGATACCGTGTAAGTTCAC+TGG - Chr4:2119714-2119733 MsG0480018245.01.T01:intron 40.0%
AATGAGCCAGTGAACTTACA+CGG + Chr4:2119723-2119742 None:intergenic 40.0%
ACAGGATACATGGGAAGTAA+TGG - Chr4:2118516-2118535 MsG0480018245.01.T01:intron 40.0%
AGAAATTGGCATGGAAGGTA+AGG + Chr4:2118898-2118917 None:intergenic 40.0%
ATTCCATGAAACAAGGGACA+TGG - Chr4:2120570-2120589 MsG0480018245.01.T01:CDS 40.0%
CAATGCTTGTGGACTTATGT+GGG - Chr4:2119953-2119972 MsG0480018245.01.T01:intron 40.0%
CAATTATAACACACGCCTCA+AGG + Chr4:2118719-2118738 None:intergenic 40.0%
CCGGGTATTACTACATTACT+TGG - Chr4:2118932-2118951 MsG0480018245.01.T01:intron 40.0%
CTGTACTACTGTTATTGGGA+GGG - Chr4:2118856-2118875 MsG0480018245.01.T01:intron 40.0%
GATGTTTCTCTTGCCAACAT+AGG - Chr4:2120419-2120438 MsG0480018245.01.T01:intron 40.0%
GGTGAAATCCACTCTAACAA+TGG - Chr4:2118067-2118086 MsG0480018245.01.T01:CDS 40.0%
GGTTTGACGGTAGACAATAA+TGG - Chr4:2119680-2119699 MsG0480018245.01.T01:intron 40.0%
TAGATTTCGTGAAAAGCGGA+AGG - Chr4:2119071-2119090 MsG0480018245.01.T01:intron 40.0%
TCTGTACTACTGTTATTGGG+AGG - Chr4:2118855-2118874 MsG0480018245.01.T01:intron 40.0%
TGGACTTATGTGGGCAAATA+AGG - Chr4:2119962-2119981 MsG0480018245.01.T01:intron 40.0%
TGGACTTGGCAGATGTAAAT+TGG + Chr4:2119613-2119632 None:intergenic 40.0%
TTTCTCCGGACGAAAATAAC+CGG - Chr4:2118913-2118932 MsG0480018245.01.T01:intron 40.0%
! AAGAGTGCAAAGGAGATGAT+TGG + Chr4:2120697-2120716 None:intergenic 40.0%
! AGGCACAGTTGTTTGTTGAA+AGG + Chr4:2120252-2120271 None:intergenic 40.0%
! ATCTCTAAGCACTGTCTGAT+TGG + Chr4:2120499-2120518 None:intergenic 40.0%
! TATGGACTATTCCCTGCAAA+GGG - Chr4:2118779-2118798 MsG0480018245.01.T01:intron 40.0%
! TTATGGACTATTCCCTGCAA+AGG - Chr4:2118778-2118797 MsG0480018245.01.T01:intron 40.0%
!! AATACCCGGTTATTTTCGTC+CGG + Chr4:2118921-2118940 None:intergenic 40.0%
!! CTGGCTCATTTTTGAACAAG+AGG - Chr4:2119733-2119752 MsG0480018245.01.T01:intron 40.0%
!! GCCTTGCTTTTAAGGATGTT+TGG - Chr4:2118540-2118559 MsG0480018245.01.T01:intron 40.0%
!! GTAATGGAGCCTTGCTTTTA+AGG - Chr4:2118532-2118551 MsG0480018245.01.T01:intron 40.0%
!! GTATTCATGGTGTTGATTCG+CGG - Chr4:2117906-2117925 MsG0480018245.01.T01:CDS 40.0%
!! TTACACGGTATCTTGCTGTT+GGG + Chr4:2119708-2119727 None:intergenic 40.0%
ACAGAACTCCATTGGAGTGT+CGG + Chr4:2119362-2119381 None:intergenic 45.0%
ACCTTCCATGCCAATTTCTC+CGG - Chr4:2118899-2118918 MsG0480018245.01.T01:intron 45.0%
AGACTCATCAGGATTGGACT+TGG + Chr4:2119627-2119646 None:intergenic 45.0%
AGGGCGATTCCATGAAACAA+GGG - Chr4:2120564-2120583 MsG0480018245.01.T01:CDS 45.0%
ATCGAAAAGGTCCATGACTG+TGG - Chr4:2120079-2120098 MsG0480018245.01.T01:intron 45.0%
ATGCAGTTTAACACGCCTTG+AGG - Chr4:2118701-2118720 MsG0480018245.01.T01:CDS 45.0%
ATTGGCATGGAAGGTAAGGT+TGG + Chr4:2118894-2118913 None:intergenic 45.0%
CGGAACAAGTGAAGGTTTGA+CGG - Chr4:2119667-2119686 MsG0480018245.01.T01:intron 45.0%
GCAATGCTTGTGGACTTATG+TGG - Chr4:2119952-2119971 MsG0480018245.01.T01:intron 45.0%
GTGTTACGACAGAACTCCAT+TGG + Chr4:2119370-2119389 None:intergenic 45.0%
TAAACCACAGTCCACAGTCA+TGG + Chr4:2120093-2120112 None:intergenic 45.0%
TGATGCAGACTCATCAGGAT+TGG + Chr4:2119633-2119652 None:intergenic 45.0%
TGCAACCCGTGATGTTCATA+TGG + Chr4:2117968-2117987 None:intergenic 45.0%
TGCAGGGAATAGTCCATAAC+AGG + Chr4:2118777-2118796 None:intergenic 45.0%
TTCTCCGGACGAAAATAACC+GGG - Chr4:2118914-2118933 MsG0480018245.01.T01:intron 45.0%
! AAGTCCACAAGCATTGCAGA+GGG + Chr4:2119949-2119968 None:intergenic 45.0%
! CATGTCAGTTGTAGGCATTG+TGG - Chr4:2119870-2119889 MsG0480018245.01.T01:intron 45.0%
! CTACCATGTCCCTTGTTTCA+TGG + Chr4:2120576-2120595 None:intergenic 45.0%
! CTTACACGGTATCTTGCTGT+TGG + Chr4:2119709-2119728 None:intergenic 45.0%
! TAAGTCCACAAGCATTGCAG+AGG + Chr4:2119950-2119969 None:intergenic 45.0%
!! ATGAACCTTTTCTGGCGACA+CGG + Chr4:2118191-2118210 None:intergenic 45.0%
AACGGTGATTCTAACTGCGG+AGG - Chr4:2118028-2118047 MsG0480018245.01.T01:CDS 50.0%
AGAACCCTCTGCAATGCTTG+TGG - Chr4:2119942-2119961 MsG0480018245.01.T01:intron 50.0%
ATCAAGGACAGCAACCTTGC+CGG - Chr4:2120335-2120354 MsG0480018245.01.T01:intron 50.0%
GAGGGCGATTCCATGAAACA+AGG - Chr4:2120563-2120582 MsG0480018245.01.T01:CDS 50.0%
GCAAGGTTGCTGTCCTTGAT+AGG + Chr4:2120335-2120354 None:intergenic 50.0%
GGGTTGCACCATATGAGCAA+TGG - Chr4:2117980-2117999 MsG0480018245.01.T01:CDS 50.0%
TCAGCTGATGCAGACTCATC+AGG + Chr4:2119638-2119657 None:intergenic 50.0%
TCCGGAGAAATTGGCATGGA+AGG + Chr4:2118903-2118922 None:intergenic 50.0%
TTCATGGAATCGCCCTCCAT+CGG + Chr4:2120560-2120579 None:intergenic 50.0%
TTCGTCCGGAGAAATTGGCA+TGG + Chr4:2118907-2118926 None:intergenic 50.0%
! AGAAGTGCACGCCAATGATG+CGG - Chr4:2119901-2119920 MsG0480018245.01.T01:intron 50.0%
! CAAGCATTGCAGAGGGTTCT+TGG + Chr4:2119942-2119961 None:intergenic 50.0%
! CAGAACTCCATTGGAGTGTC+GGG + Chr4:2119361-2119380 None:intergenic 50.0%
! TGAGGGACGCTGAGTTTTTC+TGG + Chr4:2119033-2119052 None:intergenic 50.0%
! TGGAGAATTATGTGCCGGCA+AGG + Chr4:2120352-2120371 None:intergenic 50.0%
!! AAGCACTGTCTGATTGGCCT+CGG + Chr4:2120493-2120512 None:intergenic 50.0%
!! AGAACTCCATTGGAGTGTCG+GGG + Chr4:2119360-2119379 None:intergenic 50.0%
AATGGACCCCGACACTCCAA+TGG - Chr4:2119351-2119370 MsG0480018245.01.T01:intron 55.0%
CAATGTTGTCGGTCATGGCG+TGG + Chr4:2119523-2119542 None:intergenic 55.0%
GAGCGCTTAGGGACCTATCA+AGG - Chr4:2120319-2120338 MsG0480018245.01.T01:intron 55.0%
GGCATGGAAGGTAAGGTTGG+AGG + Chr4:2118891-2118910 None:intergenic 55.0%
GTCGGTCATGGCGTGGATTT+AGG + Chr4:2119516-2119535 None:intergenic 55.0%
! AGGTCCATGACTGTGGACTG+TGG - Chr4:2120086-2120105 MsG0480018245.01.T01:intron 55.0%
!! TGAACCACAGGGAGCGCTTA+GGG - Chr4:2120308-2120327 MsG0480018245.01.T01:intron 55.0%
!! TTGAACCACAGGGAGCGCTT+AGG - Chr4:2120307-2120326 MsG0480018245.01.T01:intron 55.0%
ATGATGCGGCGTGGACCTGA+AGG - Chr4:2119915-2119934 MsG0480018245.01.T01:intron 60.0%
CAGAGGGTTCTTGGCCCTTC+AGG + Chr4:2119933-2119952 None:intergenic 60.0%
CGACTCCGTGTCGCCAGAAA+AGG - Chr4:2118183-2118202 MsG0480018245.01.T01:intron 60.0%
CTGCGGAGGAAGTGAGACTG+CGG - Chr4:2118042-2118061 MsG0480018245.01.T01:CDS 60.0%
GGAGGAAGTGAGACTGCGGA+AGG - Chr4:2118046-2118065 MsG0480018245.01.T01:CDS 60.0%
TCAGGTCCACGCCGCATCAT+TGG + Chr4:2119915-2119934 None:intergenic 60.0%
TGATGCGGCGTGGACCTGAA+GGG - Chr4:2119916-2119935 MsG0480018245.01.T01:intron 60.0%
AGGTCCCTAAGCGCTCCCTG+TGG + Chr4:2120315-2120334 None:intergenic 65.0%
TGCACGCCAATGATGCGGCG+TGG - Chr4:2119906-2119925 MsG0480018245.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 2117899 2120771 2117899 ID=MsG0480018245.01;Name=MsG0480018245.01
Chr4 mRNA 2117899 2120771 2117899 ID=MsG0480018245.01.T01;Parent=MsG0480018245.01;Name=MsG0480018245.01.T01;_AED=0.49;_eAED=0.63;_QI=0|0|0|1|1|1|7|0|386
Chr4 exon 2120466 2120771 2120466 ID=MsG0480018245.01.T01:exon:1108;Parent=MsG0480018245.01.T01
Chr4 exon 2119735 2119821 2119735 ID=MsG0480018245.01.T01:exon:1107;Parent=MsG0480018245.01.T01
Chr4 exon 2119522 2119655 2119522 ID=MsG0480018245.01.T01:exon:1106;Parent=MsG0480018245.01.T01
Chr4 exon 2118947 2119078 2118947 ID=MsG0480018245.01.T01:exon:1105;Parent=MsG0480018245.01.T01
Chr4 exon 2118687 2118792 2118687 ID=MsG0480018245.01.T01:exon:1104;Parent=MsG0480018245.01.T01
Chr4 exon 2118249 2118352 2118249 ID=MsG0480018245.01.T01:exon:1103;Parent=MsG0480018245.01.T01
Chr4 exon 2117899 2118190 2117899 ID=MsG0480018245.01.T01:exon:1102;Parent=MsG0480018245.01.T01
Chr4 CDS 2120466 2120771 2120466 ID=MsG0480018245.01.T01:cds;Parent=MsG0480018245.01.T01
Chr4 CDS 2119735 2119821 2119735 ID=MsG0480018245.01.T01:cds;Parent=MsG0480018245.01.T01
Chr4 CDS 2119522 2119655 2119522 ID=MsG0480018245.01.T01:cds;Parent=MsG0480018245.01.T01
Chr4 CDS 2118947 2119078 2118947 ID=MsG0480018245.01.T01:cds;Parent=MsG0480018245.01.T01
Chr4 CDS 2118687 2118792 2118687 ID=MsG0480018245.01.T01:cds;Parent=MsG0480018245.01.T01
Chr4 CDS 2118249 2118352 2118249 ID=MsG0480018245.01.T01:cds;Parent=MsG0480018245.01.T01
Chr4 CDS 2117899 2118190 2117899 ID=MsG0480018245.01.T01:cds;Parent=MsG0480018245.01.T01
Gene Sequence

>MsG0480018245.01.T01

ATGGATGGTATTCATGGTGTTGATTCGCGGATGCAGACCAGTGATGAACAACATCCTATACATATGCCATATGAACATCACGGGTTGCACCATATGAGCAATGGAAATGAGATGGATGACGATCAAAATAACGGTGATTCTAACTGCGGAGGAAGTGAGACTGCGGAAGGTGAAATCCACTCTAACAATGGAAATCTTCATGACAGTCACACTTTAATAATGGATCAAGGGAATGATATTGGAGATCAGCTTACTTTGTCTTTTCAGGGACAAGTTTATGTCTTCGACTCCGTGTCGCCAGAAAAGGTTCAATCTGTACTACTGTTATTGGGAGGGCGTGAAGTACCTCCAACCTTACCTTCCATGCCAATTTCTCCGGACGAAAATAACCGGGGATTTATTGGTACGCCAGAAAAACTCAGCGTCCCTCAGAGATTAGCTTCATTGATTAGATTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATTCGTTATACTGTTCGTAAAGAAGTAGCACTAAGGATGCAAAGAAATAAAGGCCAATTTACATCTGCCAAGTCCAATCCTGATGAGTCTGCATCAGCTGAAATAAATTGCGGAACAAGTGAAGGTTTGACGGTAGACAATAATGGATCCCAACAGCAAGATACCGTTTGTAGGCATTGTGGCATCAGTGAGAAGTGCACGCCAATGATGCGGCGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAGCGCTTAGGGACCTATCAAGGACAGCAACCTTGCCGGCACATAATTCTCCATTAAACAAGAATGAGGTTGAAAATCATGCATTCATTAAATTTATTTTGATAATAATAATTCCGAGGCCAATCAGACAGTGCTTAGAGATGCTGCTGAACCCTTATGACAGACCTTTACATTATGATTCCGATGGAGGGCGATTCCATGAAACAAGGGACATGGTAGAGAGTGCTTTTCACTTGATGAGAAATTATAGGAGGGCTAGTTATGTGCCTTTTTGTGAAAGGTTTAAGCTAGTTCTTTTGGAGATTTTGATCGAGTGGCCAATCATCTCCTTTGCACTCTTGTATACAGTTTTATATACACTGTCGGCAGCTGCAGATGATACAGTTGCATTTTGA
Protein sequence

>MsG0480018245.01.T01

MDGIHGVDSRMQTSDEQHPIHMPYEHHGLHHMSNGNEMDDDQNNGDSNCGGSETAEGEIHSNNGNLHDSHTLIMDQGNDIGDQLTLSFQGQVYVFDSVSPEKVQSVLLLLGGREVPPTLPSMPISPDENNRGFIGTPEKLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNPDESASAEINCGTSEGLTVDNNGSQQQDTVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGALRDLSRTATLPAHNSPLNKNEVENHAFIKFILIIIIPRPIRQCLEMLLNPYDRPLHYDSDGGRFHETRDMVESAFHLMRNYRRASYVPFCERFKLVLLEILIEWPIISFALLYTVLYTLSAAADDTVAF*