AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011550.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011550.01.T01 MTR_6g089480 47.154 246 50 6 147 312 13 258 2.43e-55 181
MsG0380011550.01.T01 MTR_6g089480 47.347 245 49 6 148 312 14 258 3.34e-55 181
MsG0380011550.01.T01 MTR_6g089480 47.347 245 49 6 148 312 14 258 4.02e-55 182
MsG0380011550.01.T01 MTR_1g101950 46.939 245 50 6 148 312 43 287 2.89e-53 178
MsG0380011550.01.T01 MTR_1g105150 43.182 220 60 5 158 312 278 497 1.94e-39 145
MsG0380011550.01.T01 MTR_1g105150 41.781 146 70 5 8 139 27 171 2.96e-20 91.7
MsG0380011550.01.T01 MTR_5g079460 41.129 248 65 7 148 315 87 333 1.09e-37 138
MsG0380011550.01.T01 MTR_1g069490 41.232 211 53 4 173 312 138 348 7.55e-36 134
MsG0380011550.01.T01 MTR_2g098950 36.842 247 78 5 147 315 33 279 7.63e-36 132
MsG0380011550.01.T01 MTR_1g069745 40.909 242 61 8 149 315 4 238 1.35e-34 127
MsG0380011550.01.T01 MTR_7g075860 35.743 249 78 6 148 314 61 309 2.61e-33 126
MsG0380011550.01.T01 MTR_1g076850 34.979 243 80 5 148 312 28 270 1.36e-32 123
MsG0380011550.01.T01 MTR_4g067310 47.368 133 57 1 196 315 148 280 1.36e-31 120
MsG0380011550.01.T01 MTR_1g057810 38.462 234 65 6 158 312 278 511 8.87e-31 122
MsG0380011550.01.T01 MTR_1g057810 41.781 146 70 5 8 139 27 171 2.89e-20 91.7
MsG0380011550.01.T01 MTR_1g054730 32.877 292 137 12 35 312 91 337 1.91e-23 99.8
MsG0380011550.01.T01 MTR_8g096570 37.313 134 68 3 23 140 76 209 1.76e-18 86.7
MsG0380011550.01.T01 MTR_0046s0180 64.151 53 19 0 260 312 7 59 3.70e-16 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011550.01.T01 AT5G51830 41.463 246 64 6 147 312 42 287 1.44e-46 160
MsG0380011550.01.T01 AT5G51830 41.463 246 64 6 147 312 42 287 1.44e-46 160
MsG0380011550.01.T01 AT1G66430 40.161 249 68 7 147 315 84 331 4.26e-42 150
MsG0380011550.01.T01 AT1G06030 35.223 247 82 5 147 315 30 276 5.24e-33 124
MsG0380011550.01.T01 AT2G31390 35.223 247 82 5 147 315 28 274 5.71e-32 121
MsG0380011550.01.T01 AT3G59480 35.341 249 79 7 147 315 29 275 6.35e-31 119
MsG0380011550.01.T01 AT1G06020 34.156 243 82 5 148 312 30 272 1.73e-30 118
MsG0380011550.01.T01 AT4G10260 35.124 242 75 7 148 309 26 265 3.15e-30 117
MsG0380011550.01.T01 AT1G50390 44.118 102 41 3 214 315 7 92 9.63e-18 79.0
MsG0380011550.01.T01 AT5G63540 38.849 139 69 4 17 139 98 236 8.04e-17 81.6
MsG0380011550.01.T01 AT5G63540 38.849 139 69 4 17 139 98 236 8.47e-17 81.3

Find 101 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCAAGAAAGCTCTTTC+TGG 0.186607 3:-1291218 MsG0380011550.01.T01:CDS
CAAACAGATTTGCGCCATTT+TGG 0.212843 3:+1292354 None:intergenic
CTGATAGGGTTCTCCAACTC+TGG 0.227406 3:-1292405 MsG0380011550.01.T01:CDS
CCTTGATCGCGCCACATATA+TGG 0.233071 3:+1288937 None:intergenic
GTGAAACGTTGATAGATTTC+CGG 0.258185 3:-1291275 MsG0380011550.01.T01:intron
CGAATTTGAGATTGGGACTA+TGG 0.282851 3:-1290262 MsG0380011550.01.T01:CDS
TTGTGCACATGTTCATTAAT+AGG 0.290325 3:+1292280 None:intergenic
TTGTGCGCCTCCTGGATTAA+AGG 0.303460 3:-1291920 MsG0380011550.01.T01:intron
TAGGTTGGAGCAGATGAATT+TGG 0.306305 3:-1290686 MsG0380011550.01.T01:CDS
CAATTAGAAGCTTGTGATTA+GGG 0.307440 3:+1289986 None:intergenic
CGATGGTCCCTTCATATTAC+AGG 0.311149 3:-1292248 MsG0380011550.01.T01:intron
AGGTTGGAGCAGATGAATTT+GGG 0.318393 3:-1290685 MsG0380011550.01.T01:CDS
ACAATTAGAAGCTTGTGATT+AGG 0.324413 3:+1289985 None:intergenic
CTTGATGTTTGTGCGCCTCC+TGG 0.325990 3:-1291928 MsG0380011550.01.T01:CDS
CCTATATTGCATCAGATTGC+CGG 0.329392 3:+1288879 None:intergenic
GTCCATGAAATTAGAAAATT+CGG 0.332161 3:-1292027 MsG0380011550.01.T01:CDS
TTAACCTTCTGACTTTGTTA+TGG 0.339987 3:-1288811 MsG0380011550.01.T01:three_prime_UTR
GGCAGTTGGCATCTCTAAGC+TGG 0.347511 3:-1291183 MsG0380011550.01.T01:CDS
AACATATCAATATATTTAGT+TGG 0.352996 3:-1288746 MsG0380011550.01.T01:three_prime_UTR
CCGGCAATCTGATGCAATAT+AGG 0.363669 3:-1288879 MsG0380011550.01.T01:three_prime_UTR
CATCACAGAAACCTCCAATT+TGG 0.367988 3:+1289160 None:intergenic
CATCGGTCAATTTGAACTTC+AGG 0.386363 3:+1291995 None:intergenic
ACACTCTACCCACTCTTTGC+CGG 0.387027 3:+1291256 None:intergenic
CTTGATCGCGCCACATATAT+GGG 0.388659 3:+1288938 None:intergenic
AGACTACGATGTCTCCAAAA+TGG 0.388919 3:-1292368 MsG0380011550.01.T01:CDS
AGTCATGTACTGCAAAATTC+AGG 0.394795 3:-1288773 MsG0380011550.01.T01:three_prime_UTR
CAAAATGGCGCAAATCTGTT+TGG 0.395582 3:-1292353 MsG0380011550.01.T01:CDS
GCTTCTGACCAAGTATTTCC+AGG 0.408074 3:-1289079 MsG0380011550.01.T01:intron
CATAGTCCCAATCTCAAATT+CGG 0.415637 3:+1290263 None:intergenic
AGAGAGACAAGGTTGCTGAT+AGG 0.421820 3:-1292420 MsG0380011550.01.T01:CDS
GTATGATCCGAATTTGAGAT+TGG 0.427728 3:-1290270 MsG0380011550.01.T01:CDS
CAAAATGATATTGATACGTC+TGG 0.432801 3:-1290638 MsG0380011550.01.T01:CDS
GTTGATGATGCATTTGTTAG+TGG 0.439175 3:-1289117 MsG0380011550.01.T01:CDS
CTGAATTACCTGGAAATACT+TGG 0.439861 3:+1289071 None:intergenic
ATTAGAAAATTCGGTAATCA+AGG 0.454842 3:-1292018 MsG0380011550.01.T01:CDS
GGAAAAGAGGCAAAAGCAAA+AGG 0.454997 3:-1292504 MsG0380011550.01.T01:CDS
GAGAGACAAGGTTGCTGATA+GGG 0.458553 3:-1292419 MsG0380011550.01.T01:CDS
GCAGTTGGCATCTCTAAGCT+GGG 0.475812 3:-1291182 MsG0380011550.01.T01:CDS
TTGAGGATTGCTAAAGAGTC+CGG 0.477772 3:-1290305 MsG0380011550.01.T01:CDS
TTGATGATGCATTTGTTAGT+GGG 0.479441 3:-1289116 MsG0380011550.01.T01:CDS
GATCTCAATTCTTGTGGTAC+CGG 0.484795 3:-1292313 MsG0380011550.01.T01:CDS
CCATATATGTGGCGCGATCA+AGG 0.489866 3:-1288937 MsG0380011550.01.T01:three_prime_UTR
GAAGAGAGACAGAGCAATCT+CGG 0.491901 3:-1292482 MsG0380011550.01.T01:CDS
GATGAGCGTGTTGACATAAC+TGG 0.492096 3:-1289141 MsG0380011550.01.T01:CDS
GAAAGAGCTTTCTTGAAAGC+AGG 0.494865 3:+1291221 None:intergenic
CTTCGAGCAGCCTCGTCTGA+TGG 0.497725 3:+1290239 None:intergenic
CAAACATCAAGGTCAGCAAC+AGG 0.497863 3:+1291940 None:intergenic
TATGATCCGAATTTGAGATT+GGG 0.500687 3:-1290269 MsG0380011550.01.T01:CDS
TGATAGGGTTCTCCAACTCT+GGG 0.504669 3:-1292404 MsG0380011550.01.T01:CDS
ACCTTCTGACTTTGTTATGG+TGG 0.508738 3:-1288808 MsG0380011550.01.T01:three_prime_UTR
ATCATACGAGAGAATGCAAC+CGG 0.511015 3:+1290286 None:intergenic
TTTGAAATGAATCCCAGAGT+TGG 0.517994 3:+1292392 None:intergenic
GGAACCTACCTGTAATATGA+AGG 0.519249 3:+1292240 None:intergenic
TTTCAAAAGCTCACGGGTGA+CGG 0.519480 3:+1292459 None:intergenic
CACGGAAGGGAAAAGATGAC+AGG 0.519724 3:-1292526 None:intergenic
GCAGATCAGTGCAGTTGAGT+TGG 0.520437 3:-1290064 MsG0380011550.01.T01:intron
ACCCTACAAAAGATGCTGTC+CGG 0.525806 3:-1288898 MsG0380011550.01.T01:three_prime_UTR
GAAAAGATGACAGGGAAAAG+AGG 0.529894 3:-1292517 MsG0380011550.01.T01:exon
TTTGACTGTTTGAACACCAT+CGG 0.530622 3:+1291978 None:intergenic
GATAGATTTCCGGCAAAGAG+TGG 0.546022 3:-1291265 MsG0380011550.01.T01:intron
AAGCTTCTAATTGTCACTGA+AGG 0.551946 3:-1289976 MsG0380011550.01.T01:CDS
GTACGATGAGCCGACTTGCA+TGG 0.553544 3:+1290332 None:intergenic
ATTGTCACTGAAGGGTCAAA+CGG 0.553842 3:-1289967 MsG0380011550.01.T01:CDS
TCTTCCGATCTCAATTCTTG+TGG 0.554279 3:-1292319 MsG0380011550.01.T01:CDS
ATCAGACGAGGCTGCTCGAA+GGG 0.555250 3:-1290237 MsG0380011550.01.T01:intron
CAGTTGGCATCTCTAAGCTG+GGG 0.565423 3:-1291181 MsG0380011550.01.T01:CDS
ACCCGAGTTTCAAAAGCTCA+CGG 0.569058 3:+1292452 None:intergenic
CAACGAAGAACCTTTAATCC+AGG 0.569795 3:+1291910 None:intergenic
GATTAGGGCGTAAAAGCTGT+TGG 0.573193 3:+1290001 None:intergenic
CAGGAGGCGCACAAACATCA+AGG 0.575331 3:+1291929 None:intergenic
CATCAGACGAGGCTGCTCGA+AGG 0.576965 3:-1290238 MsG0380011550.01.T01:CDS
TCTTTCTGGTGCTGCAAACG+TGG 0.577793 3:-1291204 MsG0380011550.01.T01:CDS
TGCACATGTTCATTAATAGG+AGG 0.580037 3:+1292283 None:intergenic
CCCGAGTTTCAAAAGCTCAC+GGG 0.588439 3:+1292453 None:intergenic
TTTCTTGAAAGCAGGCACTT+CGG 0.590586 3:+1291229 None:intergenic
GATGGTGTTCAAACAGTCAA+AGG 0.597057 3:-1291976 MsG0380011550.01.T01:CDS
AGCTTCTAATTGTCACTGAA+GGG 0.598976 3:-1289975 MsG0380011550.01.T01:CDS
AGATGAATTTGGGTATATGT+TGG 0.599101 3:-1290675 MsG0380011550.01.T01:CDS
AGTTGGCATCTCTAAGCTGG+GGG 0.602183 3:-1291180 MsG0380011550.01.T01:intron
ATAGATTTCCGGCAAAGAGT+GGG 0.603860 3:-1291264 MsG0380011550.01.T01:intron
CGGCTCATCGTACTGCCTTG+AGG 0.612068 3:-1290322 MsG0380011550.01.T01:CDS
GAACCTACCTGTAATATGAA+GGG 0.612152 3:+1292241 None:intergenic
TTGATCGCGCCACATATATG+GGG 0.619968 3:+1288939 None:intergenic
CTGAAGTTCAAATTGACCGA+TGG 0.623080 3:-1291994 MsG0380011550.01.T01:CDS
GGTGCTGCAAACGTGGCAGT+TGG 0.623402 3:-1291197 MsG0380011550.01.T01:CDS
TGATGCAATATAGGAAACAT+CGG 0.624172 3:-1288870 MsG0380011550.01.T01:three_prime_UTR
GTGCACAAAACTGCTCTCGA+TGG 0.626992 3:-1292265 MsG0380011550.01.T01:CDS
TCAAACAGTCAAAGGAGTAG+TGG 0.631978 3:-1291968 MsG0380011550.01.T01:CDS
GGACTCTTTAGCAATCCTCA+AGG 0.645080 3:+1290307 None:intergenic
GCCACCATAACAAAGTCAGA+AGG 0.647334 3:+1288807 None:intergenic
GGGACTATGGCCATCAGACG+AGG 0.649543 3:-1290249 MsG0380011550.01.T01:CDS
GATTGATGAGCCATGCAAGT+CGG 0.649771 3:-1290342 MsG0380011550.01.T01:CDS
GTTTGCTTTGAAGAGAGACA+AGG 0.658780 3:-1292431 MsG0380011550.01.T01:CDS
GGTACCACAAGAATTGAGAT+CGG 0.666538 3:+1292315 None:intergenic
ACAACTAGCATAATCAAAAG+GGG 0.666914 3:+1288720 None:intergenic
ACGGAAGGGAAAAGATGACA+GGG 0.668784 3:-1292525 None:intergenic
AATACAGCAACATCATCATG+AGG 0.670443 3:+1290024 None:intergenic
CGAAGAACCTTTAATCCAGG+AGG 0.685471 3:+1291913 None:intergenic
ATATTGATACGTCTGGCATG+CGG 0.686631 3:-1290631 MsG0380011550.01.T01:intron
TGATCGCGCCACATATATGG+GGG 0.692935 3:+1288940 None:intergenic
ATTAATAGGAGGCAGTACAC+CGG 0.703216 3:+1292294 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTAATTTATTATTA+CGG - Chr3:1289050-1289069 MsG0380011550.01.T01:intron 0.0%
!! AAAGATAATAATTTAATAAG+TGG - Chr3:1289623-1289642 MsG0380011550.01.T01:intron 10.0%
!! AAGATAATAATTTAATAAGT+GGG - Chr3:1289624-1289643 MsG0380011550.01.T01:intron 10.0%
!! TTAATTTAACAATAAGAAAA+GGG + Chr3:1290460-1290479 None:intergenic 10.0%
!! TTTCTTATTGTTAAATTAAA+GGG - Chr3:1290461-1290480 MsG0380011550.01.T01:intron 10.0%
!!! ATAAAAAAGCAAAATAATTT+TGG + Chr3:1291651-1291670 None:intergenic 10.0%
!!! TTTAATTTAACAATAAGAAA+AGG + Chr3:1290461-1290480 None:intergenic 10.0%
!!! TTTTCTTATTGTTAAATTAA+AGG - Chr3:1290460-1290479 MsG0380011550.01.T01:intron 10.0%
!! AACATATCAATATATTTAGT+TGG - Chr3:1292505-1292524 MsG0380011550.01.T01:CDS 15.0%
!! ATATATGTATTAAGATGAAA+AGG + Chr3:1289378-1289397 None:intergenic 15.0%
!! CTGAAAAATATTATAGTATT+GGG - Chr3:1289486-1289505 MsG0380011550.01.T01:intron 15.0%
!! TAATAATTGAATTAACTGAA+TGG + Chr3:1289035-1289054 None:intergenic 15.0%
!! TGAAAAATATTATAGTATTG+GGG - Chr3:1289487-1289506 MsG0380011550.01.T01:intron 15.0%
!!! ATTACAGCAAATTTTAAAAA+TGG + Chr3:1291899-1291918 None:intergenic 15.0%
!! AAAATTTACCTTAATGACAT+CGG + Chr3:1291063-1291082 None:intergenic 20.0%
!! CCTGAAAAATATTATAGTAT+TGG - Chr3:1289485-1289504 MsG0380011550.01.T01:intron 20.0%
!! CTAATTAGCATAACTTAATA+AGG - Chr3:1289838-1289857 MsG0380011550.01.T01:intron 20.0%
!! TCGAATGTAAATTAACATAT+TGG - Chr3:1291455-1291474 MsG0380011550.01.T01:intron 20.0%
!! TGCTAATTAGTATTAAATAG+AGG + Chr3:1289828-1289847 None:intergenic 20.0%
!! TTCATAATTTCTCATTCTTA+AGG - Chr3:1289153-1289172 MsG0380011550.01.T01:CDS 20.0%
!!! AAAAATATTATAGTATTGGG+GGG - Chr3:1289489-1289508 MsG0380011550.01.T01:intron 20.0%
!!! AACTTAATAAGGATGTTTTT+TGG - Chr3:1289849-1289868 MsG0380011550.01.T01:intron 20.0%
!!! AATTTTAAAAATGGAAGGTA+CGG + Chr3:1291890-1291909 None:intergenic 20.0%
!!! CAGATTTTAATTGTCTAAAT+AGG - Chr3:1291351-1291370 MsG0380011550.01.T01:intron 20.0%
!!! CCAATACTATAATATTTTTC+AGG + Chr3:1289488-1289507 None:intergenic 20.0%
!!! CTTTTGATGAAAATAGTAAA+GGG - Chr3:1291692-1291711 MsG0380011550.01.T01:intron 20.0%
!!! GAAAAATATTATAGTATTGG+GGG - Chr3:1289488-1289507 MsG0380011550.01.T01:intron 20.0%
!!! TTCACAGTACTATATTTTAT+AGG - Chr3:1291948-1291967 MsG0380011550.01.T01:CDS 20.0%
!!! TTTAATTTAATACTGATTGC+AGG - Chr3:1290856-1290875 MsG0380011550.01.T01:intron 20.0%
!!! TTTTGATGAAAATAGTAAAG+GGG - Chr3:1291693-1291712 MsG0380011550.01.T01:intron 20.0%
! AAATCTGAGTTAAATGACTT+TGG + Chr3:1291338-1291357 None:intergenic 25.0%
! ACAATAAGAAAAGGGAAAAA+AGG + Chr3:1290452-1290471 None:intergenic 25.0%
! AGATTTGAACAAATCAAACA+TGG + Chr3:1290187-1290206 None:intergenic 25.0%
! ATAAAGAGCAAAGAAGATAA+TGG + Chr3:1291400-1291419 None:intergenic 25.0%
! ATATGATGATTCTTAACAGA+AGG - Chr3:1289919-1289938 MsG0380011550.01.T01:intron 25.0%
! ATTAGAAAATTCGGTAATCA+AGG - Chr3:1289233-1289252 MsG0380011550.01.T01:intron 25.0%
! ATTATACAGACTTAAACCAT+AGG + Chr3:1290836-1290855 None:intergenic 25.0%
! ATTTCTCATTCTTAAGGAAT+AGG - Chr3:1289159-1289178 MsG0380011550.01.T01:CDS 25.0%
! CATTGTAGATTTCTTAAACA+TGG + Chr3:1290210-1290229 None:intergenic 25.0%
! GTCCATGAAATTAGAAAATT+CGG - Chr3:1289224-1289243 MsG0380011550.01.T01:intron 25.0%
! TAAAATGGTTTCTATTCGAT+GGG + Chr3:1290409-1290428 None:intergenic 25.0%
! TAAACAGAGATGGAAATTAA+AGG + Chr3:1290794-1290813 None:intergenic 25.0%
! TAACCATGTAAGTAAACAAA+TGG + Chr3:1290133-1290152 None:intergenic 25.0%
! TAAGAAATCTACAATGTGTT+GGG - Chr3:1290214-1290233 MsG0380011550.01.T01:intron 25.0%
! TGTTTACTTACATGGTTATT+TGG - Chr3:1290135-1290154 MsG0380011550.01.T01:intron 25.0%
! TTAAAATGGTTTCTATTCGA+TGG + Chr3:1290410-1290429 None:intergenic 25.0%
! TTAAGAAATCTACAATGTGT+TGG - Chr3:1290213-1290232 MsG0380011550.01.T01:intron 25.0%
! TTTGATGAAAATAGTAAAGG+GGG - Chr3:1291694-1291713 MsG0380011550.01.T01:intron 25.0%
!! AAGAAGATAATGGTAATGAA+AGG + Chr3:1291390-1291409 None:intergenic 25.0%
!! ATTGATTACACTTTTCTGAA+TGG - Chr3:1290246-1290265 MsG0380011550.01.T01:CDS 25.0%
!! CAGTACTATATTTTATAGGT+AGG - Chr3:1291952-1291971 MsG0380011550.01.T01:CDS 25.0%
!! GCTTTTGATGAAAATAGTAA+AGG - Chr3:1291691-1291710 MsG0380011550.01.T01:intron 25.0%
!! TACCGAATTTTCTAATTTCA+TGG + Chr3:1289229-1289248 None:intergenic 25.0%
!!! ACTTTTGTTATGAAGAAGTT+TGG - Chr3:1289760-1289779 MsG0380011550.01.T01:intron 25.0%
!!! ATTTTAAAAATGGAAGGTAC+GGG + Chr3:1291889-1291908 None:intergenic 25.0%
!!! ATTTTTTGTGCAGGATTTTA+AGG - Chr3:1292067-1292086 MsG0380011550.01.T01:intron 25.0%
!!! CAGCAAATTTTAAAAATGGA+AGG + Chr3:1291895-1291914 None:intergenic 25.0%
!!! TAATGAATTAGTTCTGATCT+AGG - Chr3:1289672-1289691 MsG0380011550.01.T01:intron 25.0%
!!! TGATTACTAATTTTTTGTGC+AGG - Chr3:1292058-1292077 MsG0380011550.01.T01:intron 25.0%
!!! TTTTTTGTGCAGGATTTTAA+GGG - Chr3:1292068-1292087 MsG0380011550.01.T01:intron 25.0%
AAAAGGGAAAAAAGGTAGAA+TGG + Chr3:1290444-1290463 None:intergenic 30.0%
AAAATGGTTTCTATTCGATG+GGG + Chr3:1290408-1290427 None:intergenic 30.0%
AATAACACTTCAGATAGACT+CGG + Chr3:1291156-1291175 None:intergenic 30.0%
ACAATTAGAAGCTTGTGATT+AGG + Chr3:1291269-1291288 None:intergenic 30.0%
AGAAAAAAGTTGTGAGTGTT+TGG - Chr3:1292230-1292249 MsG0380011550.01.T01:intron 30.0%
AGAAAAAGAATAACCTGCAA+TGG + Chr3:1291129-1291148 None:intergenic 30.0%
AGATGAATTTGGGTATATGT+TGG - Chr3:1290576-1290595 MsG0380011550.01.T01:intron 30.0%
AGTAATCTATTGGTACTTGT+AGG - Chr3:1289415-1289434 MsG0380011550.01.T01:intron 30.0%
AGTAGTAGTGTAGTAAATCA+TGG + Chr3:1289104-1289123 None:intergenic 30.0%
CAAAATGATATTGATACGTC+TGG - Chr3:1290613-1290632 MsG0380011550.01.T01:intron 30.0%
CAATTAGAAGCTTGTGATTA+GGG + Chr3:1291268-1291287 None:intergenic 30.0%
GGTCAAAATCTCTAATGTAA+CGG - Chr3:1289436-1289455 MsG0380011550.01.T01:intron 30.0%
GTAAAGATATCTGAATTACC+TGG + Chr3:1292193-1292212 None:intergenic 30.0%
TAACGAATGTGAATCTATGT+TGG - Chr3:1290503-1290522 MsG0380011550.01.T01:intron 30.0%
TGATGCAATATAGGAAACAT+CGG - Chr3:1292381-1292400 MsG0380011550.01.T01:CDS 30.0%
TGTCCATTTGTTTACTTACA+TGG - Chr3:1290127-1290146 MsG0380011550.01.T01:intron 30.0%
TTAACCTTCTGACTTTGTTA+TGG - Chr3:1292440-1292459 MsG0380011550.01.T01:CDS 30.0%
TTATAATGCCAGAACCATAT+TGG - Chr3:1290648-1290667 MsG0380011550.01.T01:CDS 30.0%
TTGTGCACATGTTCATTAAT+AGG + Chr3:1288974-1288993 None:intergenic 30.0%
! AGATAATGGTAATGAAAGGA+AGG + Chr3:1291386-1291405 None:intergenic 30.0%
! ATCAGCTAATCTAGAACATA+AGG + Chr3:1289589-1289608 None:intergenic 30.0%
! CTTCTTACCATATGTGTTTT+AGG - Chr3:1290546-1290565 MsG0380011550.01.T01:intron 30.0%
! TATGATCCGAATTTGAGATT+GGG - Chr3:1290982-1291001 MsG0380011550.01.T01:intron 30.0%
! TTTTCTCTCGAGTAATCTAT+TGG - Chr3:1289405-1289424 MsG0380011550.01.T01:intron 30.0%
!! AAATTTGCTGTAATACGTAC+CGG - Chr3:1291905-1291924 MsG0380011550.01.T01:intron 30.0%
!! GTTGATGAAGTTATTTTGTG+TGG - Chr3:1292254-1292273 MsG0380011550.01.T01:CDS 30.0%
!! TTACCATATGTGTTTTAGGT+TGG - Chr3:1290550-1290569 MsG0380011550.01.T01:intron 30.0%
!! TTGATGATGCATTTGTTAGT+GGG - Chr3:1292135-1292154 MsG0380011550.01.T01:intron 30.0%
!!! TGGTTGGTTAGGTTTTAAAA+TGG + Chr3:1290424-1290443 None:intergenic 30.0%
AACACCAAGTAAAATGGGTA+CGG + Chr3:1291583-1291602 None:intergenic 35.0%
AAGATGAAAAGGATGTCTAG+TGG + Chr3:1289367-1289386 None:intergenic 35.0%
AAGCTTCTAATTGTCACTGA+AGG - Chr3:1291275-1291294 MsG0380011550.01.T01:intron 35.0%
AATACAGCAACATCATCATG+AGG + Chr3:1291230-1291249 None:intergenic 35.0%
ACTTAAACCATAGGTCTCTA+TGG + Chr3:1290827-1290846 None:intergenic 35.0%
AGCGAAACACCAAGTAAAAT+GGG + Chr3:1291588-1291607 None:intergenic 35.0%
AGCTTCTAATTGTCACTGAA+GGG - Chr3:1291276-1291295 MsG0380011550.01.T01:intron 35.0%
AGTCATGTACTGCAAAATTC+AGG - Chr3:1292478-1292497 MsG0380011550.01.T01:CDS 35.0%
CACTTTATAAATGCCATTGC+AGG - Chr3:1291113-1291132 MsG0380011550.01.T01:intron 35.0%
CATAGTCCCAATCTCAAATT+CGG + Chr3:1290991-1291010 None:intergenic 35.0%
CCACAGTTTATAAACAGAGA+TGG + Chr3:1290804-1290823 None:intergenic 35.0%
CCATCTCTGTTTATAAACTG+TGG - Chr3:1290801-1290820 MsG0380011550.01.T01:intron 35.0%
CTGAATTACCTGGAAATACT+TGG + Chr3:1292183-1292202 None:intergenic 35.0%
CTGATATAGATCAAATGCAC+TGG - Chr3:1289198-1289217 MsG0380011550.01.T01:intron 35.0%
GAACCTACCTGTAATATGAA+GGG + Chr3:1289013-1289032 None:intergenic 35.0%
GAATGCAACATTGTCATGTT+TGG - Chr3:1290329-1290348 MsG0380011550.01.T01:CDS 35.0%
GCAACATTATGATAGAAGTG+TGG - Chr3:1291741-1291760 MsG0380011550.01.T01:intron 35.0%
GCAGGCTAAAATATCCATTA+TGG - Chr3:1290874-1290893 MsG0380011550.01.T01:intron 35.0%
GCATGTTCTTACAACAACAA+TGG - Chr3:1291812-1291831 MsG0380011550.01.T01:intron 35.0%
GTTATATTCCCCCATATATG+TGG - Chr3:1292303-1292322 MsG0380011550.01.T01:CDS 35.0%
TAGAACATAAGGACTTACCT+AGG + Chr3:1289578-1289597 None:intergenic 35.0%
TCAAACTGATGGAACCATAA+TGG + Chr3:1290891-1290910 None:intergenic 35.0%
TGACTTTGGTAAGCTTACAT+TGG + Chr3:1291324-1291343 None:intergenic 35.0%
TGATCATAACCTCATCAAGA+AGG - Chr3:1290766-1290785 MsG0380011550.01.T01:intron 35.0%
TGCACATGTTCATTAATAGG+AGG + Chr3:1288971-1288990 None:intergenic 35.0%
TTCATCTGCAGTTATAAGCA+AGG - Chr3:1290094-1290113 MsG0380011550.01.T01:intron 35.0%
TTCTGATCTAGGTTATGAAC+TGG - Chr3:1289683-1289702 MsG0380011550.01.T01:intron 35.0%
TTTCCTGTTACTATCTACGT+GGG - Chr3:1290158-1290177 MsG0380011550.01.T01:intron 35.0%
TTTGACTGTTTGAACACCAT+CGG + Chr3:1289276-1289295 None:intergenic 35.0%
! AAAAGGTAGAATGGTTGGTT+AGG + Chr3:1290435-1290454 None:intergenic 35.0%
! AATATTATAGTATTGGGGGG+TGG - Chr3:1289492-1289511 MsG0380011550.01.T01:intron 35.0%
! GAAGGGTATAATGAGCATAT+GGG - Chr3:1291031-1291050 MsG0380011550.01.T01:intron 35.0%
! GTATGATCCGAATTTGAGAT+TGG - Chr3:1290981-1291000 MsG0380011550.01.T01:intron 35.0%
! GTGAAACGTTGATAGATTTC+CGG - Chr3:1289976-1289995 MsG0380011550.01.T01:CDS 35.0%
! TTTGAAATGAATCCCAGAGT+TGG + Chr3:1288862-1288881 None:intergenic 35.0%
!! ATGAAGTTATTTTGTGTGGC+AGG - Chr3:1292258-1292277 MsG0380011550.01.T01:CDS 35.0%
!! CAATTTGCTGTAATACGTAC+CGG + Chr3:1291927-1291946 None:intergenic 35.0%
!! CATATGATCTCTAGGATTTC+GGG + Chr3:1290726-1290745 None:intergenic 35.0%
!! GCATATGATCTCTAGGATTT+CGG + Chr3:1290727-1290746 None:intergenic 35.0%
!! GTTGATGATGCATTTGTTAG+TGG - Chr3:1292134-1292153 MsG0380011550.01.T01:intron 35.0%
!! TTATGAACTGGTTTGTCTCT+TGG - Chr3:1289695-1289714 MsG0380011550.01.T01:intron 35.0%
!! TTATTTTGTGTGGCAGGATA+AGG - Chr3:1292264-1292283 MsG0380011550.01.T01:CDS 35.0%
AACATTTCAGTCCACTCATC+AGG + Chr3:1291423-1291442 None:intergenic 40.0%
AGACTACGATGTCTCCAAAA+TGG - Chr3:1288883-1288902 MsG0380011550.01.T01:three_prime_UTR 40.0%
AGCAAAAGCCAATATGGTTC+TGG + Chr3:1290659-1290678 None:intergenic 40.0%
AGGTTGGAGCAGATGAATTT+GGG - Chr3:1290566-1290585 MsG0380011550.01.T01:intron 40.0%
ATAGATTTCCGGCAAAGAGT+GGG - Chr3:1289987-1290006 MsG0380011550.01.T01:CDS 40.0%
ATATTGATACGTCTGGCATG+CGG - Chr3:1290620-1290639 MsG0380011550.01.T01:intron 40.0%
ATCATACGAGAGAATGCAAC+CGG + Chr3:1290968-1290987 None:intergenic 40.0%
ATTAATAGGAGGCAGTACAC+CGG + Chr3:1288960-1288979 None:intergenic 40.0%
ATTGTCACTGAAGGGTCAAA+CGG - Chr3:1291284-1291303 MsG0380011550.01.T01:intron 40.0%
CAAAATGGCGCAAATCTGTT+TGG - Chr3:1288898-1288917 MsG0380011550.01.T01:three_prime_UTR 40.0%
CAACGAAGAACCTTTAATCC+AGG + Chr3:1289344-1289363 None:intergenic 40.0%
CAAGTAAAATGGGTACGGTT+CGG + Chr3:1291578-1291597 None:intergenic 40.0%
CAGCGAAACACCAAGTAAAA+TGG + Chr3:1291589-1291608 None:intergenic 40.0%
CATCACAGAAACCTCCAATT+TGG + Chr3:1292094-1292113 None:intergenic 40.0%
CATCGGTCAATTTGAACTTC+AGG + Chr3:1289259-1289278 None:intergenic 40.0%
CCAAGTAGCAAAAGCCAATA+TGG + Chr3:1290665-1290684 None:intergenic 40.0%
CCTATATTGCATCAGATTGC+CGG + Chr3:1292375-1292394 None:intergenic 40.0%
CTGAAGTTCAAATTGACCGA+TGG - Chr3:1289257-1289276 MsG0380011550.01.T01:intron 40.0%
GAAAGAGCTTTCTTGAAAGC+AGG + Chr3:1290033-1290052 None:intergenic 40.0%
GAGTACCCTACTATGTCATT+GGG + Chr3:1291484-1291503 None:intergenic 40.0%
GATCTCAATTCTTGTGGTAC+CGG - Chr3:1288938-1288957 MsG0380011550.01.T01:three_prime_UTR 40.0%
GATGGTGTTCAAACAGTCAA+AGG - Chr3:1289275-1289294 MsG0380011550.01.T01:intron 40.0%
GCTCCAACCTAAAACACATA+TGG + Chr3:1290556-1290575 None:intergenic 40.0%
GCTTTCAAGAAAGCTCTTTC+TGG - Chr3:1290033-1290052 MsG0380011550.01.T01:CDS 40.0%
GGAAAAGAGGCAAAAGCAAA+AGG - Chr3:1288747-1288766 MsG0380011550.01.T01:three_prime_UTR 40.0%
GGAACCTACCTGTAATATGA+AGG + Chr3:1289014-1289033 None:intergenic 40.0%
GGGAAAAAAGGTAGAATGGT+TGG + Chr3:1290440-1290459 None:intergenic 40.0%
GGTACCACAAGAATTGAGAT+CGG + Chr3:1288939-1288958 None:intergenic 40.0%
GTAGGTGTAAAACTTACGCA+AGG - Chr3:1291970-1291989 MsG0380011550.01.T01:CDS 40.0%
GTTAAAGTTCGTGCATTTCG+AGG - Chr3:1290351-1290370 MsG0380011550.01.T01:intron 40.0%
GTTTCCTGTTACTATCTACG+TGG - Chr3:1290157-1290176 MsG0380011550.01.T01:intron 40.0%
TAAAGGGTCATGCTAACTTG+AGG - Chr3:1290477-1290496 MsG0380011550.01.T01:intron 40.0%
TATCATACGCGTACCCAATA+CGG + Chr3:1291541-1291560 None:intergenic 40.0%
TCAAACAGTCAAAGGAGTAG+TGG - Chr3:1289283-1289302 MsG0380011550.01.T01:intron 40.0%
TCCTAGAGATCATATGCTTC+TGG - Chr3:1290730-1290749 MsG0380011550.01.T01:intron 40.0%
TCTTCCGATCTCAATTCTTG+TGG - Chr3:1288932-1288951 MsG0380011550.01.T01:three_prime_UTR 40.0%
TGGCTCATCAATCAAACTGA+TGG + Chr3:1290902-1290921 None:intergenic 40.0%
TTGAGGATTGCTAAAGAGTC+CGG - Chr3:1290946-1290965 MsG0380011550.01.T01:intron 40.0%
TTGCTCTTTATCCTGATGAG+TGG - Chr3:1291409-1291428 MsG0380011550.01.T01:intron 40.0%
TTTCTTGAAAGCAGGCACTT+CGG + Chr3:1290025-1290044 None:intergenic 40.0%
! ACCTTCTGACTTTGTTATGG+TGG - Chr3:1292443-1292462 MsG0380011550.01.T01:CDS 40.0%
! AGTTGATGCAGCAAAACACA+CGG - Chr3:1291610-1291629 MsG0380011550.01.T01:intron 40.0%
! ATAGTAGGGTACTCCAAACA+TGG - Chr3:1291490-1291509 MsG0380011550.01.T01:intron 40.0%
! ATGTGAATCTATGTTGGCTG+CGG - Chr3:1290509-1290528 MsG0380011550.01.T01:intron 40.0%
! CAAACAGATTTGCGCCATTT+TGG + Chr3:1288900-1288919 None:intergenic 40.0%
! CGAAGGGTATAATGAGCATA+TGG - Chr3:1291030-1291049 MsG0380011550.01.T01:intron 40.0%
! CGAATTTGAGATTGGGACTA+TGG - Chr3:1290989-1291008 MsG0380011550.01.T01:intron 40.0%
! TAGGTTGGAGCAGATGAATT+TGG - Chr3:1290565-1290584 MsG0380011550.01.T01:intron 40.0%
! TATAGATCAAATGCACTGGC+AGG - Chr3:1289202-1289221 MsG0380011550.01.T01:intron 40.0%
! TCCAGAAGCATATGATCTCT+AGG + Chr3:1290734-1290753 None:intergenic 40.0%
!! AAGTGGACTGGTTGTTTGTT+TGG - Chr3:1289954-1289973 MsG0380011550.01.T01:CDS 40.0%
!! ATTCGCAAGCTCACTTTTCA+GGG + Chr3:1290313-1290332 None:intergenic 40.0%
!! CAGGATTTTAAGGGCCAAAT+TGG - Chr3:1292077-1292096 MsG0380011550.01.T01:intron 40.0%
!! CTTTTGCTACTTGGAGTTGA+TGG - Chr3:1290671-1290690 MsG0380011550.01.T01:CDS 40.0%
!! GATTTTAAGGGCCAAATTGG+AGG - Chr3:1292080-1292099 MsG0380011550.01.T01:intron 40.0%
!! GTTTGCTTTGAAGAGAGACA+AGG - Chr3:1288820-1288839 MsG0380011550.01.T01:three_prime_UTR 40.0%
!! TGATGAGTGGACTGAAATGT+TGG - Chr3:1291422-1291441 MsG0380011550.01.T01:intron 40.0%
!! TTAAAGGCACCTTCTTGATG+AGG + Chr3:1290778-1290797 None:intergenic 40.0%
!!! CCATATTGGCTTTTGCTACT+TGG - Chr3:1290662-1290681 MsG0380011550.01.T01:CDS 40.0%
AAGCCCACGTAGATAGTAAC+AGG + Chr3:1290164-1290183 None:intergenic 45.0%
AAGGACTTACCTAGGTTGCT+TGG + Chr3:1289570-1289589 None:intergenic 45.0%
AATCACTGTTAGCTGACTGC+TGG + Chr3:1292043-1292062 None:intergenic 45.0%
ACCCGAGTTTCAAAAGCTCA+CGG + Chr3:1288802-1288821 None:intergenic 45.0%
ACCCTACAAAAGATGCTGTC+CGG - Chr3:1292353-1292372 MsG0380011550.01.T01:CDS 45.0%
AGAGAGACAAGGTTGCTGAT+AGG - Chr3:1288831-1288850 MsG0380011550.01.T01:three_prime_UTR 45.0%
ATCATACGCGTACCCAATAC+GGG + Chr3:1291540-1291559 None:intergenic 45.0%
CAAACATCAAGGTCAGCAAC+AGG + Chr3:1289314-1289333 None:intergenic 45.0%
CCGGCAATCTGATGCAATAT+AGG - Chr3:1292372-1292391 MsG0380011550.01.T01:CDS 45.0%
CGAAGAACCTTTAATCCAGG+AGG + Chr3:1289341-1289360 None:intergenic 45.0%
CGATGGTCCCTTCATATTAC+AGG - Chr3:1289003-1289022 MsG0380011550.01.T01:intron 45.0%
CTGCAACAAAACAAGTGGAC+TGG - Chr3:1289942-1289961 MsG0380011550.01.T01:intron 45.0%
CTTGATCGCGCCACATATAT+GGG + Chr3:1292316-1292335 None:intergenic 45.0%
GAAGAGAGACAGAGCAATCT+CGG - Chr3:1288769-1288788 MsG0380011550.01.T01:three_prime_UTR 45.0%
GAAGGCTGCAACAAAACAAG+TGG - Chr3:1289937-1289956 MsG0380011550.01.T01:intron 45.0%
GAGAGACAAGGTTGCTGATA+GGG - Chr3:1288832-1288851 MsG0380011550.01.T01:three_prime_UTR 45.0%
GATAGATTTCCGGCAAAGAG+TGG - Chr3:1289986-1290005 MsG0380011550.01.T01:CDS 45.0%
GATTAGGGCGTAAAAGCTGT+TGG + Chr3:1291253-1291272 None:intergenic 45.0%
GATTGATGAGCCATGCAAGT+CGG - Chr3:1290909-1290928 MsG0380011550.01.T01:intron 45.0%
GCCACCATAACAAAGTCAGA+AGG + Chr3:1292447-1292466 None:intergenic 45.0%
GCTTCTGACCAAGTATTTCC+AGG - Chr3:1292172-1292191 MsG0380011550.01.T01:intron 45.0%
GGACACCCAATGACATAGTA+GGG - Chr3:1291476-1291495 MsG0380011550.01.T01:intron 45.0%
GGACTCTTTAGCAATCCTCA+AGG + Chr3:1290947-1290966 None:intergenic 45.0%
GGATCAAGCCGATGTCATTA+AGG - Chr3:1291052-1291071 MsG0380011550.01.T01:intron 45.0%
GGTCCCTTCATATTACAGGT+AGG - Chr3:1289007-1289026 MsG0380011550.01.T01:intron 45.0%
GTGTGTGTGTGTGTGTTTCA+AGG - Chr3:1290272-1290291 MsG0380011550.01.T01:CDS 45.0%
GTTGATGCAGCAAAACACAC+GGG - Chr3:1291611-1291630 MsG0380011550.01.T01:intron 45.0%
TACCGGTACTTCTCCATGTT+TGG + Chr3:1291506-1291525 None:intergenic 45.0%
TCTAATGTAACGGTGAGACG+TGG - Chr3:1289446-1289465 MsG0380011550.01.T01:intron 45.0%
TGATAGGGTTCTCCAACTCT+GGG - Chr3:1288847-1288866 MsG0380011550.01.T01:three_prime_UTR 45.0%
TGGACACCCAATGACATAGT+AGG - Chr3:1291475-1291494 MsG0380011550.01.T01:intron 45.0%
TTGATCGCGCCACATATATG+GGG + Chr3:1292315-1292334 None:intergenic 45.0%
TTTCAAAAGCTCACGGGTGA+CGG + Chr3:1288795-1288814 None:intergenic 45.0%
! CATCTTTTGTAGGGTAACGC+AGG + Chr3:1292348-1292367 None:intergenic 45.0%
! CGAACCGTACCCATTTTACT+TGG - Chr3:1291576-1291595 MsG0380011550.01.T01:intron 45.0%
! CTCCAAACATGGAGAAGTAC+CGG - Chr3:1291501-1291520 MsG0380011550.01.T01:intron 45.0%
! GATGAGCGTGTTGACATAAC+TGG - Chr3:1292110-1292129 MsG0380011550.01.T01:intron 45.0%
! GGAGTACCCTACTATGTCAT+TGG + Chr3:1291485-1291504 None:intergenic 45.0%
!! AAAATGGGTACGGTTCGGTA+CGG + Chr3:1291573-1291592 None:intergenic 45.0%
!! CATTCGCAAGCTCACTTTTC+AGG + Chr3:1290314-1290333 None:intergenic 45.0%
!! GAACTGGTTTGTCTCTTGGT+TGG - Chr3:1289699-1289718 MsG0380011550.01.T01:intron 45.0%
!! TTCGCAAGCTCACTTTTCAG+GGG + Chr3:1290312-1290331 None:intergenic 45.0%
!!! ACCCGTGAGCTTTTGAAACT+CGG - Chr3:1288797-1288816 MsG0380011550.01.T01:three_prime_UTR 45.0%
!! ATATTAGTAAAAAAAAAAAA+AGG + Chr3:1289895-1289914 None:intergenic 5.0%
AACGGTGAGACGTGGAAGAT+TGG - Chr3:1289454-1289473 MsG0380011550.01.T01:intron 50.0%
ACACTCTACCCACTCTTTGC+CGG + Chr3:1289998-1290017 None:intergenic 50.0%
ACTGTGGCCATAGAGACCTA+TGG - Chr3:1290817-1290836 MsG0380011550.01.T01:intron 50.0%
ACTTACCTAGGTTGCTTGGC+TGG + Chr3:1289566-1289585 None:intergenic 50.0%
AGTTGGCATCTCTAAGCTGG+GGG - Chr3:1290071-1290090 MsG0380011550.01.T01:intron 50.0%
CAGTTGGCATCTCTAAGCTG+GGG - Chr3:1290070-1290089 MsG0380011550.01.T01:intron 50.0%
CCATATATGTGGCGCGATCA+AGG - Chr3:1292314-1292333 MsG0380011550.01.T01:CDS 50.0%
CCCGAGTTTCAAAAGCTCAC+GGG + Chr3:1288801-1288820 None:intergenic 50.0%
CCTTGATCGCGCCACATATA+TGG + Chr3:1292317-1292336 None:intergenic 50.0%
CTGATAGGGTTCTCCAACTC+TGG - Chr3:1288846-1288865 MsG0380011550.01.T01:three_prime_UTR 50.0%
GACGTTGAGTCACTGTGACT+GGG + Chr3:1289528-1289547 None:intergenic 50.0%
GCAGATCAGTGCAGTTGAGT+TGG - Chr3:1291187-1291206 MsG0380011550.01.T01:CDS 50.0%
GCAGTTGGCATCTCTAAGCT+GGG - Chr3:1290069-1290088 MsG0380011550.01.T01:intron 50.0%
GTGCACAAAACTGCTCTCGA+TGG - Chr3:1288986-1289005 MsG0380011550.01.T01:intron 50.0%
TGATCGCGCCACATATATGG+GGG + Chr3:1292314-1292333 None:intergenic 50.0%
TGGGGGAATATAACGCTGCA+TGG + Chr3:1292297-1292316 None:intergenic 50.0%
TTGTGCGCCTCCTGGATTAA+AGG - Chr3:1289331-1289350 MsG0380011550.01.T01:intron 50.0%
! CTTACGCAAGGTTTGCTTCG+AGG - Chr3:1291982-1292001 MsG0380011550.01.T01:CDS 50.0%
! GCCGGACAGCATCTTTTGTA+GGG + Chr3:1292357-1292376 None:intergenic 50.0%
! TGCCGGACAGCATCTTTTGT+AGG + Chr3:1292358-1292377 None:intergenic 50.0%
!! TCTTTCTGGTGCTGCAAACG+TGG - Chr3:1290047-1290066 MsG0380011550.01.T01:CDS 50.0%
!!! CCCGTGAGCTTTTGAAACTC+GGG - Chr3:1288798-1288817 MsG0380011550.01.T01:three_prime_UTR 50.0%
ACCAGGTACGCACCCGTATT+GGG - Chr3:1291525-1291544 MsG0380011550.01.T01:intron 55.0%
ACTCTCCAGCCAAGCAACCT+AGG - Chr3:1289558-1289577 MsG0380011550.01.T01:intron 55.0%
ATCAGACGAGGCTGCTCGAA+GGG - Chr3:1291014-1291033 MsG0380011550.01.T01:intron 55.0%
CGACGTTGAGTCACTGTGAC+TGG + Chr3:1289529-1289548 None:intergenic 55.0%
CTTGATGTTTGTGCGCCTCC+TGG - Chr3:1289323-1289342 MsG0380011550.01.T01:intron 55.0%
GGCAGTTGGCATCTCTAAGC+TGG - Chr3:1290068-1290087 MsG0380011550.01.T01:intron 55.0%
TACCAGGTACGCACCCGTAT+TGG - Chr3:1291524-1291543 MsG0380011550.01.T01:intron 55.0%
! CAGGAGGCGCACAAACATCA+AGG + Chr3:1289325-1289344 None:intergenic 55.0%
!! CATGGAGAAGTACCGGTACC+AGG - Chr3:1291508-1291527 MsG0380011550.01.T01:intron 55.0%
!! GTACGATGAGCCGACTTGCA+TGG + Chr3:1290922-1290941 None:intergenic 55.0%
ACCCAATACGGGTGCGTACC+TGG + Chr3:1291529-1291548 None:intergenic 60.0%
CATCAGACGAGGCTGCTCGA+AGG - Chr3:1291013-1291032 MsG0380011550.01.T01:intron 60.0%
CGGCTCATCGTACTGCCTTG+AGG - Chr3:1290929-1290948 MsG0380011550.01.T01:intron 60.0%
CTTCGAGCAGCCTCGTCTGA+TGG + Chr3:1291015-1291034 None:intergenic 60.0%
GCAGCAAAACACACGGGCAG+TGG - Chr3:1291617-1291636 MsG0380011550.01.T01:intron 60.0%
GGGACTATGGCCATCAGACG+AGG - Chr3:1291002-1291021 MsG0380011550.01.T01:intron 60.0%
TACGGGTGCGTACCTGGTAC+CGG + Chr3:1291523-1291542 None:intergenic 60.0%
! GGTGCTGCAAACGTGGCAGT+TGG - Chr3:1290054-1290073 MsG0380011550.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 1288735 1292538 1288735 ID=MsG0380011550.01;Name=MsG0380011550.01
Chr3 mRNA 1288735 1292538 1288735 ID=MsG0380011550.01.T01;Parent=MsG0380011550.01;Name=MsG0380011550.01.T01;_AED=0.18;_eAED=0.19;_QI=5|0.42|0.62|1|0.85|0.75|8|280|315
Chr3 exon 1288735 1288993 1288735 ID=MsG0380011550.01.T01:exon:1174;Parent=MsG0380011550.01.T01
Chr3 exon 1289080 1289193 1289080 ID=MsG0380011550.01.T01:exon:1173;Parent=MsG0380011550.01.T01
Chr3 exon 1289948 1290082 1289948 ID=MsG0380011550.01.T01:exon:1172;Parent=MsG0380011550.01.T01
Chr3 exon 1290238 1290367 1290238 ID=MsG0380011550.01.T01:exon:1171;Parent=MsG0380011550.01.T01
Chr3 exon 1290632 1290705 1290632 ID=MsG0380011550.01.T01:exon:1170;Parent=MsG0380011550.01.T01
Chr3 exon 1291181 1291282 1291181 ID=MsG0380011550.01.T01:exon:1169;Parent=MsG0380011550.01.T01
Chr3 exon 1291921 1292049 1291921 ID=MsG0380011550.01.T01:exon:1168;Parent=MsG0380011550.01.T01
Chr3 exon 1292249 1292538 1292249 ID=MsG0380011550.01.T01:exon:1167;Parent=MsG0380011550.01.T01
Chr3 five_prime_UTR 1292534 1292538 1292534 ID=MsG0380011550.01.T01:five_prime_utr;Parent=MsG0380011550.01.T01
Chr3 CDS 1292249 1292533 1292249 ID=MsG0380011550.01.T01:cds;Parent=MsG0380011550.01.T01
Chr3 CDS 1291921 1292049 1291921 ID=MsG0380011550.01.T01:cds;Parent=MsG0380011550.01.T01
Chr3 CDS 1291181 1291282 1291181 ID=MsG0380011550.01.T01:cds;Parent=MsG0380011550.01.T01
Chr3 CDS 1290632 1290705 1290632 ID=MsG0380011550.01.T01:cds;Parent=MsG0380011550.01.T01
Chr3 CDS 1290238 1290367 1290238 ID=MsG0380011550.01.T01:cds;Parent=MsG0380011550.01.T01
Chr3 CDS 1289948 1290082 1289948 ID=MsG0380011550.01.T01:cds;Parent=MsG0380011550.01.T01
Chr3 CDS 1289101 1289193 1289101 ID=MsG0380011550.01.T01:cds;Parent=MsG0380011550.01.T01
Chr3 three_prime_UTR 1289080 1289100 1289080 ID=MsG0380011550.01.T01:three_prime_utr;Parent=MsG0380011550.01.T01
Chr3 three_prime_UTR 1288735 1288993 1288735 ID=MsG0380011550.01.T01:three_prime_utr;Parent=MsG0380011550.01.T01
Gene Sequence

>MsG0380011550.01.T01

ATGACAGGGAAAAGAGGCAAAAGCAAAAGGAAGAGAGACAGAGCAATCTCGGCCGTCACCCGTGAGCTTTTGAAACTCGGGTTTGCTTTGAAGAGAGACAAGGTTGCTGATAGGGTTCTCCAACTCTGGGATTCATTTCAAAAAGACTACGATGTCTCCAAAATGGCGCAAATCTGTTTGGACAAGTGTCTGTCTTCCGATCTCAATTCTTGTGGTACCGGTGTACTGCCTCCTATTAATGAACATGTGCACAAAACTGCTCTCGATGGTCCCTTCATATTACAGGTCCATGAAATTAGAAAATTCGGTAATCAAGGCCTGAAGTTCAAATTGACCGATGGTGTTCAAACAGTCAAAGGAGTAGTGGTCAAGCCTGTTGCTGACCTTGATGTTTGTGCGCCTCCTGGATTAAAGATTTCCGGCAAAGAGTGGGTAGAGTGTCTAGCCGAAGTGCCTGCTTTCAAGAAAGCTCTTTCTGGTGCTGCAAACGTGGCAGTTGGCATCTCTAAGCTGGGGGTTGGAGCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCAAAATGATATTGATACGTCTGGCATGCGTTTGATTGATGAGCCATGCAAGTCGGCTCATCGTACTGCCTTGAGGATTGCTAAAGAGTCCGGTTGCATTCTCTCGTATGATCCGAATTTGAGATTGGGACTATGGCCATCAGACGAGGCTGCTCGAAGGATCAGTGCAGTTGAGTTGGCTATTTTGACTGATAAACCTCATGATGATGTTGCTGTATTCCAACAGCTTTTACGCCCTAATCACAAGCTTCTAATTGTCACTGAAGGGTCAAACGGTTGTAGATATTACACCAATGATTTTAAGGGCCAAATTGGAGGTTTCTGTGATGAGCGTGTTGACATAACTGGTGTTGATGATGCATTTGTTAGTGGGATTTGTACGAGATAG
Protein sequence

>MsG0380011550.01.T01

MTGKRGKSKRKRDRAISAVTRELLKLGFALKRDKVADRVLQLWDSFQKDYDVSKMAQICLDKCLSSDLNSCGTGVLPPINEHVHKTALDGPFILQVHEIRKFGNQGLKFKLTDGVQTVKGVVVKPVADLDVCAPPGLKISGKEWVECLAEVPAFKKALSGAANVAVGISKLGVGADEFGYMLADILKQNDIDTSGMRLIDEPCKSAHRTALRIAKESGCILSYDPNLRLGLWPSDEAARRISAVELAILTDKPHDDVAVFQQLLRPNHKLLIVTEGSNGCRYYTNDFKGQIGGFCDERVDITGVDDAFVSGICTR*