AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025652.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025652.01.T01 MTR_5g032190 88.511 618 25 1 1 618 1 572 0.0 1123
MsG0580025652.01.T01 MTR_5g032190 95.436 482 22 0 1 482 1 482 0.0 967
MsG0580025652.01.T01 MTR_5g032190 95.378 476 22 0 1 476 1 476 0.0 956
MsG0580025652.01.T01 MTR_1g112330 72.403 616 115 5 1 608 1 569 0.0 878
MsG0580025652.01.T01 MTR_1g112330 72.078 616 114 5 1 608 1 566 0.0 874
MsG0580025652.01.T01 MTR_1g112330 82.198 455 74 2 1 448 1 455 0.0 770
MsG0580025652.01.T01 MTR_7g011550 44.790 547 260 9 1 526 1 526 1.19e-140 420
MsG0580025652.01.T01 MTR_5g029580 40.162 371 162 7 234 599 27 342 8.12e-80 257
MsG0580025652.01.T01 MTR_3g077870 35.455 220 126 6 233 444 23 234 1.39e-32 128
MsG0580025652.01.T01 MTR_4g105740 36.957 184 103 5 266 444 46 221 6.84e-31 123
MsG0580025652.01.T01 MTR_4g105740 36.957 184 103 5 266 444 46 221 1.04e-30 123
MsG0580025652.01.T01 MTR_8g088250 34.872 195 112 4 270 453 26 216 1.15e-29 119
MsG0580025652.01.T01 MTR_2g090130 42.000 150 50 2 271 418 103 217 2.46e-29 116
MsG0580025652.01.T01 MTR_2g090130 57.377 61 26 0 101 161 43 103 4.04e-19 87.0
MsG0580025652.01.T01 MTR_7g011640 49.550 111 35 3 101 210 15 105 1.66e-22 94.4
MsG0580025652.01.T01 MTR_7g011880 52.239 67 31 1 376 441 58 124 1.57e-14 72.8
MsG0580025652.01.T01 MTR_7g061850 40.625 96 52 2 235 325 28 123 3.24e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025652.01.T01 AT1G32230 39.836 610 286 17 17 606 21 569 7.61e-130 393
MsG0580025652.01.T01 AT1G32230 39.478 613 291 16 17 609 21 573 9.89e-130 394
MsG0580025652.01.T01 AT1G32230 39.804 613 288 17 17 609 21 572 1.27e-129 393
MsG0580025652.01.T01 AT1G32230 39.804 613 288 17 17 609 21 572 1.27e-129 393
MsG0580025652.01.T01 AT1G32230 39.804 613 288 17 17 609 21 572 1.27e-129 393
MsG0580025652.01.T01 AT1G32230 39.804 613 288 17 17 609 21 572 1.27e-129 393
MsG0580025652.01.T01 AT2G35510 40.959 459 252 8 1 448 1 451 1.67e-107 332
MsG0580025652.01.T01 AT2G35510 40.909 462 254 8 1 451 1 454 7.40e-107 334
MsG0580025652.01.T01 AT2G35510 40.909 462 254 8 1 451 1 454 7.40e-107 334
MsG0580025652.01.T01 AT1G70440 31.646 237 149 6 226 450 2 237 4.91e-33 129
MsG0580025652.01.T01 AT1G70440 31.646 237 149 6 226 450 2 237 4.91e-33 129
MsG0580025652.01.T01 AT1G23550 41.860 129 72 1 316 441 109 237 4.15e-31 124
MsG0580025652.01.T01 AT5G62520 33.562 146 88 3 301 442 89 229 3.05e-20 90.9
MsG0580025652.01.T01 AT5G62520 33.793 145 87 3 301 441 89 228 8.12e-20 91.3
MsG0580025652.01.T01 AT3G47720 31.098 164 92 5 292 444 85 238 5.46e-15 76.6

Find 182 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTGATATTGACGAAAA+TGG 0.188994 5:+21840342 MsG0580025652.01.T01:CDS
TCAGAATCAGCATAAATTTC+AGG 0.192300 5:-21839265 None:intergenic
TGTTTGACAACTTCGTTTCT+TGG 0.207598 5:-21838920 None:intergenic
CATTTAGAAATTGAAATAAA+TGG 0.220833 5:+21839370 MsG0580025652.01.T01:CDS
ATATGCATTATCTGCAATTC+AGG 0.249387 5:+21841948 MsG0580025652.01.T01:CDS
AGAATTTCATATTGTTTAAT+CGG 0.272064 5:+21842716 MsG0580025652.01.T01:three_prime_UTR
GATCAGGATTATAGGTGTTT+TGG 0.273923 5:+21836848 MsG0580025652.01.T01:intron
AGCATGACATCAAGAATATT+TGG 0.282378 5:-21838647 None:intergenic
CCTCGCTTCCATCTAGGGTT+AGG 0.283026 5:+21836288 MsG0580025652.01.T01:five_prime_UTR
ATAGTTCAAACCTTAAAATT+AGG 0.283459 5:+21842536 MsG0580025652.01.T01:three_prime_UTR
ATTTAATATCATTAGGATCT+TGG 0.284189 5:-21839345 None:intergenic
CCACCGCCTCGCTTCCATCT+AGG 0.287838 5:+21836282 MsG0580025652.01.T01:five_prime_UTR
TTGAAACTAACAACATATTC+TGG 0.302685 5:-21840534 None:intergenic
TGATAGACCATCAAACGTTC+TGG 0.315101 5:-21839043 None:intergenic
TTCTCCACTATCCTGATTGC+AGG 0.320979 5:-21839305 None:intergenic
CAAGGTTTCTGCGAAGGATA+TGG 0.322660 5:+21841916 MsG0580025652.01.T01:CDS
CCGTGTAATAATGGGGAATA+TGG 0.323010 5:+21840386 MsG0580025652.01.T01:CDS
CACTTTGCGCCGTAGATTGT+TGG 0.333114 5:+21842619 MsG0580025652.01.T01:three_prime_UTR
ATGGAACCTTGTTAAGTATT+GGG 0.334730 5:+21842353 MsG0580025652.01.T01:exon
AGAAAAGTACCTTGCTTTGA+AGG 0.336075 5:-21842204 None:intergenic
TGTATATGGAAGGTTGGATT+TGG 0.339592 5:+21839567 MsG0580025652.01.T01:CDS
GTTGGTAGTGCAGTTGTATA+TGG 0.343580 5:+21839553 MsG0580025652.01.T01:CDS
AAATGTAATTTAATATCATT+AGG 0.344899 5:-21839352 None:intergenic
ACCATCTCGTGTGATCAAAA+TGG 0.346697 5:+21842334 MsG0580025652.01.T01:CDS
ATCCAAGATACTATATAGTA+TGG 0.349263 5:+21840484 MsG0580025652.01.T01:CDS
TGTACAGAAGATGTTTCTTA+AGG 0.349580 5:+21839594 MsG0580025652.01.T01:CDS
ATTGTGATATTGACGAAAAT+GGG 0.350719 5:+21840343 MsG0580025652.01.T01:CDS
CTGGTAATTACCAGGCAAAA+AGG 0.353126 5:+21842104 MsG0580025652.01.T01:intron
TTTAGAATTTCAGAGAAGTT+AGG 0.363963 5:-21836333 None:intergenic
TATCAGATGAATTTGAAATC+TGG 0.365305 5:+21839193 MsG0580025652.01.T01:CDS
TTCCATACTATATAGTATCT+TGG 0.367221 5:-21840486 None:intergenic
GGAGAAAAGAATGTACAATA+TGG 0.368567 5:+21836869 MsG0580025652.01.T01:five_prime_UTR
AGAATATGTTGTTAGTTTCA+AGG 0.376305 5:+21840536 MsG0580025652.01.T01:CDS
AATGGAACCTTGTTAAGTAT+TGG 0.376678 5:+21842352 MsG0580025652.01.T01:exon
GCTTGGCTTGCTTCTTCTAA+AGG 0.378498 5:+21839754 MsG0580025652.01.T01:CDS
CTTAAGGGAACTAGTAGTTT+TGG 0.380222 5:+21839610 MsG0580025652.01.T01:CDS
GTACAGAAGATGTTTCTTAA+GGG 0.381330 5:+21839595 MsG0580025652.01.T01:CDS
GTCTCGTCAATCCAAGCAAT+AGG 0.384507 5:-21839226 None:intergenic
CGTTTGATGGTCTATCAAAA+TGG 0.393202 5:+21839049 MsG0580025652.01.T01:CDS
ATCTTCATCAATAGGTTACT+TGG 0.395668 5:+21836145 None:intergenic
CGAAAATGGGGTTCGACACT+TGG 0.398654 5:+21840356 MsG0580025652.01.T01:CDS
GTTTGCAGCGCCCTATTGCT+TGG 0.403920 5:+21839215 MsG0580025652.01.T01:CDS
GCAGCAACCAAACAGAATTC+TGG 0.404525 5:-21838712 None:intergenic
GACTCATATTGGACGGTCAT+TGG 0.404817 5:+21838985 MsG0580025652.01.T01:CDS
GGAGTCGATGCTTCCAAGTT+GGG 0.405561 5:+21839391 MsG0580025652.01.T01:CDS
GACGCGCCTGAGTGAGAGAT+TGG 0.408085 5:-21836241 None:intergenic
CTCGCTTCCATCTAGGGTTA+GGG 0.413431 5:+21836289 MsG0580025652.01.T01:five_prime_UTR
AGAATGTTGTTGACTTGGTT+AGG 0.415750 5:+21839092 MsG0580025652.01.T01:CDS
CCAAGGACCAGAATTCTGTT+TGG 0.416022 5:+21838705 MsG0580025652.01.T01:five_prime_UTR
AGTAGCAATAACATGGGAAA+TGG 0.417478 5:+21839493 MsG0580025652.01.T01:CDS
TCCTGATTGCAGGGATCATA+AGG 0.421377 5:-21839295 None:intergenic
TTTGATCACACGAGATGGTT+GGG 0.422810 5:-21842330 None:intergenic
CGATGAACCCTAACCCTAGA+TGG 0.425114 5:-21836296 None:intergenic
GAATTTCATATTGTTTAATC+GGG 0.425880 5:+21842717 MsG0580025652.01.T01:three_prime_UTR
CACCGCCTCGCTTCCATCTA+GGG 0.431468 5:+21836283 MsG0580025652.01.T01:five_prime_UTR
GATGAACATGTGAATATTGT+TGG 0.434057 5:+21842418 MsG0580025652.01.T01:three_prime_UTR
TCTAAATGCACACATGGCTT+TGG 0.435149 5:+21839829 MsG0580025652.01.T01:CDS
TAGTCTTACTTCCTAAAAGA+AGG 0.436907 5:-21840925 None:intergenic
GCCTTATGATCCCTGCAATC+AGG 0.440028 5:+21839294 MsG0580025652.01.T01:CDS
ACGAAATCAGAGACTCATAT+TGG 0.440224 5:+21838974 MsG0580025652.01.T01:CDS
CCAAACAGAATTCTGGTCCT+TGG 0.441566 5:-21838705 None:intergenic
TGCGACCAGTGTTACCTCGC+TGG 0.442121 5:+21838882 MsG0580025652.01.T01:CDS
AGTGAGAGATTGGGTCTGGC+AGG 0.442429 5:-21836231 None:intergenic
TGTGAATATTGTTGGCTCTT+GGG 0.447043 5:+21842426 MsG0580025652.01.T01:three_prime_UTR
GAGAAGTTAGGTTTATGAAA+AGG 0.448516 5:-21836321 None:intergenic
TCCTCAGAATGTTGTTGACT+TGG 0.450948 5:+21839087 MsG0580025652.01.T01:CDS
TTTGAATTCTGGGATACCTC+AGG 0.455076 5:+21841817 MsG0580025652.01.T01:CDS
ACTATCATAGTCACCACTAC+TGG 0.457911 5:-21840442 None:intergenic
GCGTTTATGATAAAGCTGTT+TGG 0.457999 5:+21842558 MsG0580025652.01.T01:three_prime_UTR
TCAGGATAGTGGAGAAAGTC+AGG 0.458623 5:+21839312 MsG0580025652.01.T01:CDS
TGCAGTTGTATATGGAAGGT+TGG 0.460207 5:+21839561 MsG0580025652.01.T01:CDS
AGTAGTGGTGACTATGATAG+TGG 0.460572 5:+21840444 MsG0580025652.01.T01:CDS
ATGTGAATATTGTTGGCTCT+TGG 0.463278 5:+21842425 MsG0580025652.01.T01:three_prime_UTR
CAAACAGAATTCTGGTCCTT+GGG 0.470624 5:-21838704 None:intergenic
CTCTTGAGAGCTACAATAGT+TGG 0.472193 5:+21842181 MsG0580025652.01.T01:CDS
AGCACAGGAAAAGGCATTGA+AGG 0.473023 5:-21841875 None:intergenic
CAACGGAAAGGCATCGGATA+GGG 0.473840 5:+21838799 MsG0580025652.01.T01:CDS
CAATAGGTTACTTGGAAAAG+AGG 0.478509 5:+21836153 None:intergenic
CAGAATCAGCATAAATTTCA+GGG 0.479346 5:-21839264 None:intergenic
AGTATGCTTAACTATAACAT+TGG 0.483021 5:-21839431 None:intergenic
TCTCGTCAATCCAAGCAATA+GGG 0.485939 5:-21839225 None:intergenic
CCTGAGTGAGAGATTGGGTC+TGG 0.488432 5:-21836235 None:intergenic
ATGCTAATGTTCGATATGCT+TGG 0.490597 5:+21839737 MsG0580025652.01.T01:CDS
AAGGTCTCTTCTGCTGCTGA+AGG 0.492093 5:+21840555 MsG0580025652.01.T01:CDS
ATTGCTTGGATTGACGAGAC+AGG 0.495738 5:+21839229 MsG0580025652.01.T01:CDS
TAGAAATTAAACCTGGCAAA+AGG 0.497397 5:-21839877 None:intergenic
GATAGACCATCAAACGTTCT+GGG 0.497415 5:-21839042 None:intergenic
TGGACGCCCAGAACGTTTGA+TGG 0.500372 5:+21839036 MsG0580025652.01.T01:CDS
ATACCTCAGGGAATAGCATC+TGG 0.501440 5:+21841830 MsG0580025652.01.T01:CDS
GAAGCGAGGCGGTGGAGAAA+AGG 0.501669 5:-21836274 None:intergenic
GCATCAATAAGCACAGGAAA+AGG 0.503405 5:-21841884 None:intergenic
TGGAGTCGATGCTTCCAAGT+TGG 0.503473 5:+21839390 MsG0580025652.01.T01:CDS
ACTATGATGAAGTGTGGGCT+TGG 0.505685 5:+21839787 MsG0580025652.01.T01:CDS
TAAGGTTTGAACTATTGTGC+TGG 0.505767 5:-21842528 None:intergenic
TACAGTGATGCAATCACGAT+TGG 0.505775 5:+21839669 MsG0580025652.01.T01:CDS
GATCCCTGCAATCAGGATAG+TGG 0.509927 5:+21839301 MsG0580025652.01.T01:CDS
AATATGGAGCTTCTCCGTCC+TGG 0.513713 5:+21840402 MsG0580025652.01.T01:CDS
AAAGGCATTGAAGGGGATGT+TGG 0.517939 5:-21841866 None:intergenic
CCTAGATGGAAGCGAGGCGG+TGG 0.523537 5:-21836282 None:intergenic
GCGACCAGTGTTACCTCGCT+GGG 0.532218 5:+21838883 MsG0580025652.01.T01:CDS
GAAAAGAATGTACAATATGG+AGG 0.532485 5:+21836872 MsG0580025652.01.T01:five_prime_UTR
GGCAAACAACGGAAAGGCAT+CGG 0.532519 5:+21838793 MsG0580025652.01.T01:CDS
CTATCATAGTCACCACTACT+GGG 0.534346 5:-21840441 None:intergenic
CTATCAAAATGGTGAATGGA+AGG 0.536490 5:+21839060 MsG0580025652.01.T01:CDS
CTATATAGTATCTTGGATTG+TGG 0.536691 5:-21840479 None:intergenic
AAGTTCAAATATAAAAGCTC+AGG 0.539447 5:-21838736 None:intergenic
TGCATCACTGTACTTGAGAA+GGG 0.539798 5:-21839658 None:intergenic
TATATGAATTATAAGAAGAG+TGG 0.542935 5:+21839016 MsG0580025652.01.T01:CDS
ATATGAGTCTCTGATTTCGT+CGG 0.544734 5:-21838971 None:intergenic
CAACATATTCTGGACAGATG+TGG 0.545442 5:-21840524 None:intergenic
ACTGGTCGCAGATCTCCGTT+TGG 0.546119 5:-21838869 None:intergenic
ACAACGGAAAGGCATCGGAT+AGG 0.546402 5:+21838798 MsG0580025652.01.T01:CDS
TGGTCTATCAAAATGGTGAA+TGG 0.549899 5:+21839056 MsG0580025652.01.T01:CDS
GTGAGAGATTGGGTCTGGCA+GGG 0.550447 5:-21836230 None:intergenic
AACATATTCTGGACAGATGT+GGG 0.551162 5:-21840523 None:intergenic
TTGAATTCTGGGATACCTCA+GGG 0.552752 5:+21841818 MsG0580025652.01.T01:CDS
GGACGAAACTGTCTAGTGCC+AGG 0.552779 5:-21840420 None:intergenic
CCACATGCTACATGTCCAAA+CGG 0.553167 5:+21838854 MsG0580025652.01.T01:CDS
AACATGGGAAATGGAAATGT+TGG 0.556039 5:+21839502 MsG0580025652.01.T01:CDS
TATCTACTATGATGAAGTGT+GGG 0.563052 5:+21839782 MsG0580025652.01.T01:CDS
TGGAGGGTAACTGCAGTGCT+TGG 0.563869 5:+21836889 MsG0580025652.01.T01:five_prime_UTR
GCACAGGAAAAGGCATTGAA+GGG 0.565819 5:-21841874 None:intergenic
ACGCGCCTGAGTGAGAGATT+GGG 0.567948 5:-21836240 None:intergenic
ATTAAACCTGGCAAAAGGAA+AGG 0.568389 5:-21839872 None:intergenic
AATAGTTGGCCTTCAAAGCA+AGG 0.570840 5:+21842195 MsG0580025652.01.T01:CDS
CTGAGAGCATCAATAAGCAC+AGG 0.571313 5:-21841890 None:intergenic
TATTGATGCTCTCAGAAACA+AGG 0.572331 5:+21841898 MsG0580025652.01.T01:CDS
TGAAGATAGTAGCAATAACA+TGG 0.572879 5:+21839486 MsG0580025652.01.T01:CDS
CAGAAACAAGGTTTCTGCGA+AGG 0.572993 5:+21841910 MsG0580025652.01.T01:CDS
GTAGTGCAGTTGTATATGGA+AGG 0.578361 5:+21839557 MsG0580025652.01.T01:CDS
ACCAAGTCAACAACATTCTG+AGG 0.581281 5:-21839088 None:intergenic
TTGCTTGGATTGACGAGACA+GGG 0.581940 5:+21839230 MsG0580025652.01.T01:CDS
GAGTCGATGCTTCCAAGTTG+GGG 0.583392 5:+21839392 MsG0580025652.01.T01:CDS
TTGCATCACTGTACTTGAGA+AGG 0.584101 5:-21839659 None:intergenic
AAGTGTGGGCTTGGTCATTG+TGG 0.585698 5:+21839796 MsG0580025652.01.T01:CDS
ATCCATGAATAAAATTCCCA+TGG 0.586318 5:+21836355 MsG0580025652.01.T01:five_prime_UTR
CCATATTCCCCATTATTACA+CGG 0.586757 5:-21840386 None:intergenic
TCTCCACTATCCTGATTGCA+GGG 0.589306 5:-21839304 None:intergenic
ATCACACGAGATGGTTGGGA+GGG 0.590498 5:-21842326 None:intergenic
AAACTGTGCTGGTGAGGGTG+AGG 0.591437 5:-21838670 None:intergenic
TCAAACAAACTGTGCTGGTG+AGG 0.594201 5:-21838676 None:intergenic
CCAGACCCAATCTCTCACTC+AGG 0.595104 5:+21836235 MsG0580025652.01.T01:five_prime_UTR
TGATCTTATCCGTCTTAATG+TGG 0.595394 5:+21842379 MsG0580025652.01.T01:three_prime_UTR
AAAAGAATGTACAATATGGA+GGG 0.598654 5:+21836873 MsG0580025652.01.T01:five_prime_UTR
AAGTTTCAAACAAACTGTGC+TGG 0.601374 5:-21838681 None:intergenic
TATGCATTATCTGCAATTCA+GGG 0.603277 5:+21841949 MsG0580025652.01.T01:CDS
GATGCCCAGCGAGGTAACAC+TGG 0.607233 5:-21838887 None:intergenic
AGACAGTTTCGTCCCAGTAG+TGG 0.612844 5:+21840429 MsG0580025652.01.T01:CDS
ATAGCATCTGGTTCGCGTAG+AGG 0.613583 5:+21841842 MsG0580025652.01.T01:CDS
CAGAGTGTTCCACATTAAGA+CGG 0.614713 5:-21842388 None:intergenic
GTAGTGGTGACTATGATAGT+GGG 0.614725 5:+21840445 MsG0580025652.01.T01:CDS
TCTACATCTAAATGCACACA+TGG 0.616416 5:+21839823 MsG0580025652.01.T01:CDS
CCGTTTGGACATGTAGCATG+TGG 0.622892 5:-21838854 None:intergenic
TCATCTCCCAATACTTAACA+AGG 0.623898 5:-21842359 None:intergenic
GGGTTGTGCTTAATCTGAAG+CGG 0.628518 5:+21838819 MsG0580025652.01.T01:CDS
GCTATCGAAGTAGCAAACAA+TGG 0.630365 5:-21842690 None:intergenic
GATCACACGAGATGGTTGGG+AGG 0.630443 5:-21842327 None:intergenic
AGTTTGTTTGAAACTTCCCA+AGG 0.632571 5:+21838688 MsG0580025652.01.T01:five_prime_UTR
GGTCAAAATTTGAGACCAAG+AGG 0.634301 5:+21836376 MsG0580025652.01.T01:five_prime_UTR
GAAACTGTCTAGTGCCAGGA+CGG 0.638018 5:-21840416 None:intergenic
TTGTGATATTGACGAAAATG+GGG 0.640860 5:+21840344 MsG0580025652.01.T01:CDS
GCATCACTGTACTTGAGAAG+GGG 0.643866 5:-21839657 None:intergenic
CTATCTACTATGATGAAGTG+TGG 0.646279 5:+21839781 MsG0580025652.01.T01:CDS
AATCAGAGACTCATATTGGA+CGG 0.648143 5:+21838978 MsG0580025652.01.T01:CDS
GAAGATAGTAGCAATAACAT+GGG 0.651958 5:+21839487 MsG0580025652.01.T01:CDS
CAAACAAACTGTGCTGGTGA+GGG 0.655112 5:-21838675 None:intergenic
CATGGAGGCAAACAACGGAA+AGG 0.657589 5:+21838787 MsG0580025652.01.T01:exon
CACAGGAAAAGGCATTGAAG+GGG 0.658134 5:-21841873 None:intergenic
ACTGTGGAGGTAGAGTTACA+TGG 0.660219 5:+21839139 MsG0580025652.01.T01:CDS
TGCGAAGAAAGCAACTGTGG+AGG 0.668909 5:+21839126 MsG0580025652.01.T01:CDS
AGTCGATGCTTCCAAGTTGG+GGG 0.670164 5:+21839393 MsG0580025652.01.T01:CDS
AACCCTAGATGGAAGCGAGG+CGG 0.670501 5:-21836285 None:intergenic
TAATGCGAAGAAAGCAACTG+TGG 0.675973 5:+21839123 MsG0580025652.01.T01:CDS
CCTAACCCTAGATGGAAGCG+AGG 0.679125 5:-21836288 None:intergenic
ACAGTGTGAACGAACACGCA+CGG 0.680983 5:+21836179 MsG0580025652.01.T01:five_prime_UTR
ATAAACATGGAGGCAAACAA+CGG 0.683583 5:+21838782 MsG0580025652.01.T01:exon
ATTGATCTAGTAGATAAACA+TGG 0.692401 5:+21838769 MsG0580025652.01.T01:exon
TGGTGACTATGATAGTGGGG+TGG 0.700703 5:+21840449 MsG0580025652.01.T01:CDS
TAGTGGTGACTATGATAGTG+GGG 0.714306 5:+21840446 MsG0580025652.01.T01:CDS
GAACCAGATGCTATTCCCTG+AGG 0.729221 5:-21841833 None:intergenic
GATCTAGTAGATAAACATGG+AGG 0.729895 5:+21838772 MsG0580025652.01.T01:exon
GATACAAGTGATGCCCAGCG+AGG 0.747737 5:-21838896 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTAATTTAATATCATT+AGG - Chr5:21839355-21839374 None:intergenic 10.0%
!! AACTTAATATATATGAAAAA+AGG - Chr5:21841119-21841138 None:intergenic 10.0%
!!! AACAAGTTTTAAATTTATAT+TGG + Chr5:21837554-21837573 MsG0580025652.01.T01:intron 10.0%
!! AATTAAAAAAATTGGGAATA+TGG - Chr5:21838615-21838634 None:intergenic 15.0%
!! AGAATTTCATATTGTTTAAT+CGG + Chr5:21842716-21842735 MsG0580025652.01.T01:three_prime_UTR 15.0%
!! AGGAAAAAAATTATTTAGAT+GGG + Chr5:21841369-21841388 MsG0580025652.01.T01:intron 15.0%
!! CATTTAGAAATTGAAATAAA+TGG + Chr5:21839370-21839389 MsG0580025652.01.T01:CDS 15.0%
!! TTTACACAAGTATTTATTTA+AGG + Chr5:21839991-21840010 MsG0580025652.01.T01:intron 15.0%
!!! AAGACTAAGAATAATATTTT+TGG + Chr5:21840941-21840960 MsG0580025652.01.T01:CDS 15.0%
!!! AGACTAAGAATAATATTTTT+GGG + Chr5:21840942-21840961 MsG0580025652.01.T01:CDS 15.0%
!!! ATTTTAATAAAATTCTGAGA+AGG + Chr5:21841553-21841572 MsG0580025652.01.T01:intron 15.0%
!!! GGAATTGATAATTTAATAAA+AGG + Chr5:21841245-21841264 MsG0580025652.01.T01:intron 15.0%
!!! TAAATTTATATTGGAGTTTT+TGG + Chr5:21837563-21837582 MsG0580025652.01.T01:intron 15.0%
!!! TATATTTTTATTTTGCTCAA+CGG - Chr5:21839533-21839552 None:intergenic 15.0%
!!! TTTTTATTATTCTGTTGTAA+TGG + Chr5:21840279-21840298 MsG0580025652.01.T01:intron 15.0%
!! AAGACATTGATGTATAAATA+TGG - Chr5:21840211-21840230 None:intergenic 20.0%
!! AATTAAATCTCTTATCTTCT+TGG + Chr5:21838445-21838464 MsG0580025652.01.T01:intron 20.0%
!! ACCAATATTATAAACGAAAA+TGG - Chr5:21840654-21840673 None:intergenic 20.0%
!! AGAAGACATAAAAGAAATAA+AGG - Chr5:21840593-21840612 None:intergenic 20.0%
!! AGACATTGATGTATAAATAT+GGG - Chr5:21840210-21840229 None:intergenic 20.0%
!! ATAAGGTCTATAAACTTTAA+AGG + Chr5:21837892-21837911 MsG0580025652.01.T01:intron 20.0%
!! ATAGTTCAAACCTTAAAATT+AGG + Chr5:21842536-21842555 MsG0580025652.01.T01:three_prime_UTR 20.0%
!! ATATAAAAGATGAAACACAT+TGG - Chr5:21841185-21841204 None:intergenic 20.0%
!! ATTTAATATCATTAGGATCT+TGG - Chr5:21839348-21839367 None:intergenic 20.0%
!! CCTGGATAATTAAAAAAATT+GGG - Chr5:21838622-21838641 None:intergenic 20.0%
!! CTTTATTCTTATTAATCAGT+AGG - Chr5:21838351-21838370 None:intergenic 20.0%
!! GAATTTCATATTGTTTAATC+GGG + Chr5:21842717-21842736 MsG0580025652.01.T01:three_prime_UTR 20.0%
!! GAGCAAAATAAAAATATAGT+TGG + Chr5:21839535-21839554 MsG0580025652.01.T01:CDS 20.0%
!! GAGGAAAAAAATTATTTAGA+TGG + Chr5:21841368-21841387 MsG0580025652.01.T01:intron 20.0%
!! TATATATGAAAAAAGGAAAG+TGG - Chr5:21841112-21841131 None:intergenic 20.0%
!! TATATGAATTATAAGAAGAG+TGG + Chr5:21839016-21839035 MsG0580025652.01.T01:CDS 20.0%
!! TATGTTAAGATCTATCTTAT+TGG + Chr5:21837364-21837383 MsG0580025652.01.T01:intron 20.0%
!! TATTATAAACGAAAATGGAA+AGG - Chr5:21840649-21840668 None:intergenic 20.0%
!!! AAAGGATCTTATTTTTTGTT+AGG - Chr5:21840631-21840650 None:intergenic 20.0%
!!! AATTCAATAGTTTTTTCCTT+TGG + Chr5:21839966-21839985 MsG0580025652.01.T01:intron 20.0%
!!! AGTATTATAGAACATTTTCA+AGG - Chr5:21840100-21840119 None:intergenic 20.0%
!!! ATATGCTTTTAGTTAATTGT+GGG + Chr5:21836930-21836949 MsG0580025652.01.T01:intron 20.0%
!!! ATATTTTGTTTTTGCATTGT+CGG + Chr5:21837829-21837848 MsG0580025652.01.T01:intron 20.0%
!!! CCAATTTTTTTAATTATCCA+GGG + Chr5:21838620-21838639 MsG0580025652.01.T01:intron 20.0%
!!! GACTAAGAATAATATTTTTG+GGG + Chr5:21840943-21840962 MsG0580025652.01.T01:CDS 20.0%
!!! GATATATAATGCATTTTTAC+AGG + Chr5:21840902-21840921 MsG0580025652.01.T01:intron 20.0%
!!! TAACTTGTTGATATATGATT+CGG + Chr5:21840696-21840715 MsG0580025652.01.T01:intron 20.0%
!!! TATAAATTGTCATTGTTTTC+TGG + Chr5:21842031-21842050 MsG0580025652.01.T01:intron 20.0%
!!! TCATTTTGCTTATTCATTTT+TGG + Chr5:21837650-21837669 MsG0580025652.01.T01:intron 20.0%
!!! TCCATTTTCGTTTATAATAT+TGG + Chr5:21840650-21840669 MsG0580025652.01.T01:intron 20.0%
! AAAAATTATTTAGATGGGAC+AGG + Chr5:21841374-21841393 MsG0580025652.01.T01:intron 25.0%
! AAAAGAATGTACAATATGGA+GGG + Chr5:21836873-21836892 MsG0580025652.01.T01:five_prime_UTR 25.0%
! AAATTACGAAAAATTGTCGT+GGG + Chr5:21839713-21839732 MsG0580025652.01.T01:CDS 25.0%
! AAGAAACCGTTTAAACAATT+AGG - Chr5:21842299-21842318 None:intergenic 25.0%
! AAGTTCAAATATAAAAGCTC+AGG - Chr5:21838739-21838758 None:intergenic 25.0%
! AATACTTGTGTAAAAACCAA+AGG - Chr5:21839985-21840004 None:intergenic 25.0%
! AATTCAATTCAATTACCTCT+TGG - Chr5:21836394-21836413 None:intergenic 25.0%
! ACAATTGACAATAATAGAAG+TGG - Chr5:21840064-21840083 None:intergenic 25.0%
! AGTATGCTTAACTATAACAT+TGG - Chr5:21839434-21839453 None:intergenic 25.0%
! AGTTTATAGACCTTATGATA+AGG - Chr5:21837888-21837907 None:intergenic 25.0%
! ATACCTCCTAATTGTTTAAA+CGG + Chr5:21842290-21842309 MsG0580025652.01.T01:intron 25.0%
! ATCCAAGATACTATATAGTA+TGG + Chr5:21840484-21840503 MsG0580025652.01.T01:CDS 25.0%
! ATGTATAAATATGGGGAAAA+AGG - Chr5:21840202-21840221 None:intergenic 25.0%
! ATTGATCTAGTAGATAAACA+TGG + Chr5:21838769-21838788 MsG0580025652.01.T01:exon 25.0%
! ATTGTGATATTGACGAAAAT+GGG + Chr5:21840343-21840362 MsG0580025652.01.T01:CDS 25.0%
! CACAAGTATTTATTTAAGGA+TGG + Chr5:21839995-21840014 MsG0580025652.01.T01:intron 25.0%
! CCCTGGATAATTAAAAAAAT+TGG - Chr5:21838623-21838642 None:intergenic 25.0%
! GACATTGATGTATAAATATG+GGG - Chr5:21840209-21840228 None:intergenic 25.0%
! GATGCTATACTATTAATCTA+TGG + Chr5:21838403-21838422 MsG0580025652.01.T01:intron 25.0%
! TATCCACAATCCATAAAAAA+GGG - Chr5:21837077-21837096 None:intergenic 25.0%
! TCTAGAAATTAAACATCTGA+TGG - Chr5:21837783-21837802 None:intergenic 25.0%
! TGATGATTAGAAATTAAACC+TGG - Chr5:21839887-21839906 None:intergenic 25.0%
! TTATCAATTCCTCTATATTC+TGG - Chr5:21841236-21841255 None:intergenic 25.0%
! TTCCATACTATATAGTATCT+TGG - Chr5:21840489-21840508 None:intergenic 25.0%
! TTGAAACTAACAACATATTC+TGG - Chr5:21840537-21840556 None:intergenic 25.0%
!! AGAATATGTTGTTAGTTTCA+AGG + Chr5:21840536-21840555 MsG0580025652.01.T01:CDS 25.0%
!! ATCATAAACGCCTAATTTTA+AGG - Chr5:21842549-21842568 None:intergenic 25.0%
!! CAGATGTTTAATTTCTAGAA+GGG + Chr5:21837784-21837803 MsG0580025652.01.T01:intron 25.0%
!! CGAATCAATTTTTGAATTCT+GGG + Chr5:21841807-21841826 MsG0580025652.01.T01:CDS 25.0%
!! CTTTTATGAAAGTCAACAAA+CGG - Chr5:21837229-21837248 None:intergenic 25.0%
!! TACTGCTGTATTTACATTTT+TGG + Chr5:21837712-21837731 MsG0580025652.01.T01:intron 25.0%
!! TATCAGATGAATTTGAAATC+TGG + Chr5:21839193-21839212 MsG0580025652.01.T01:CDS 25.0%
!! TCAGATGTTTAATTTCTAGA+AGG + Chr5:21837783-21837802 MsG0580025652.01.T01:intron 25.0%
!! TCGAATCAATTTTTGAATTC+TGG + Chr5:21841806-21841825 MsG0580025652.01.T01:CDS 25.0%
!! TGGATATTCCATATTGTTTT+TGG + Chr5:21842578-21842597 MsG0580025652.01.T01:three_prime_UTR 25.0%
!! TTTAAACAATTAGGAGGTAT+AGG - Chr5:21842290-21842309 None:intergenic 25.0%
!! TTTAAGCTTAATTTTGTTGC+TGG + Chr5:21836622-21836641 MsG0580025652.01.T01:intron 25.0%
!! TTTAGAATTTCAGAGAAGTT+AGG - Chr5:21836336-21836355 None:intergenic 25.0%
!! TTTTACTATCTAAGCAATCT+AGG + Chr5:21841627-21841646 MsG0580025652.01.T01:intron 25.0%
!! TTTTTCTATCCAACAATCTA+CGG - Chr5:21842631-21842650 None:intergenic 25.0%
!!! AAATGCATTGCTTTTTACAA+AGG - Chr5:21841075-21841094 None:intergenic 25.0%
!!! ATCTCTTGTTGTTTTTAGTT+TGG + Chr5:21836979-21836998 MsG0580025652.01.T01:intron 25.0%
!!! ATCTTTTTGATTTTGTGATC+AGG + Chr5:21836832-21836851 MsG0580025652.01.T01:intron 25.0%
!!! CATGATTTTCAGTTTTGATT+TGG + Chr5:21836420-21836439 MsG0580025652.01.T01:intron 25.0%
!!! CCCAATTTTTTTAATTATCC+AGG + Chr5:21838619-21838638 MsG0580025652.01.T01:intron 25.0%
!!! GATATGCTTTTAGTTAATTG+TGG + Chr5:21836929-21836948 MsG0580025652.01.T01:intron 25.0%
!!! TAAACTTTAAAGGCTTTGTT+TGG + Chr5:21837902-21837921 MsG0580025652.01.T01:intron 25.0%
!!! TGCTTTTTACAAAGGAAATT+TGG - Chr5:21841067-21841086 None:intergenic 25.0%
AAAAATTCAGCACAAGATGA+TGG - Chr5:21839165-21839184 None:intergenic 30.0%
AAACAAGTTTCCAAAAGGAA+GGG - Chr5:21840868-21840887 None:intergenic 30.0%
AAACCGTTTAAACAATTAGG+AGG - Chr5:21842296-21842315 None:intergenic 30.0%
AACCTAGAGCAATTTATTCA+GGG - Chr5:21838225-21838244 None:intergenic 30.0%
AAGTGATCTGTCAAATATGA+AGG - Chr5:21840792-21840811 None:intergenic 30.0%
AATCTGTCTACAAGATTGTT+AGG + Chr5:21837624-21837643 MsG0580025652.01.T01:intron 30.0%
AATGGAACCTTGTTAAGTAT+TGG + Chr5:21842352-21842371 MsG0580025652.01.T01:exon 30.0%
AATTACGAAAAATTGTCGTG+GGG + Chr5:21839714-21839733 MsG0580025652.01.T01:CDS 30.0%
ACTATCTACTATCCAATTAC+AGG - Chr5:21837753-21837772 None:intergenic 30.0%
AGCATGACATCAAGAATATT+TGG - Chr5:21838650-21838669 None:intergenic 30.0%
ATATGCATTATCTGCAATTC+AGG + Chr5:21841948-21841967 MsG0580025652.01.T01:CDS 30.0%
ATCCATGAATAAAATTCCCA+TGG + Chr5:21836355-21836374 MsG0580025652.01.T01:five_prime_UTR 30.0%
ATGGAACCTTGTTAAGTATT+GGG + Chr5:21842353-21842372 MsG0580025652.01.T01:exon 30.0%
ATGTAAGTAAATGTTGACCA+CGG + Chr5:21837520-21837539 MsG0580025652.01.T01:intron 30.0%
ATTGTGGGAGTTCTTAATTT+CGG + Chr5:21836945-21836964 MsG0580025652.01.T01:intron 30.0%
CAGAATCAGCATAAATTTCA+GGG - Chr5:21839267-21839286 None:intergenic 30.0%
CATTGTGATATTGACGAAAA+TGG + Chr5:21840342-21840361 MsG0580025652.01.T01:CDS 30.0%
CTATATAGTATCTTGGATTG+TGG - Chr5:21840482-21840501 None:intergenic 30.0%
CTATCTACTATCCAATTACA+GGG - Chr5:21837752-21837771 None:intergenic 30.0%
CTCAAGTACCAAAAACAATA+TGG - Chr5:21842589-21842608 None:intergenic 30.0%
GAAAAGAATGTACAATATGG+AGG + Chr5:21836872-21836891 MsG0580025652.01.T01:five_prime_UTR 30.0%
GAAAGAAACAAGTTTCCAAA+AGG - Chr5:21840873-21840892 None:intergenic 30.0%
GAAATTACGAAAAATTGTCG+TGG + Chr5:21839712-21839731 MsG0580025652.01.T01:CDS 30.0%
GAAGATAGTAGCAATAACAT+GGG + Chr5:21839487-21839506 MsG0580025652.01.T01:CDS 30.0%
GAATACTTTAATTAGTCGTC+TGG - Chr5:21838383-21838402 None:intergenic 30.0%
GAGAAGTTAGGTTTATGAAA+AGG - Chr5:21836324-21836343 None:intergenic 30.0%
GATATCAATTAAGACAGAGA+CGG - Chr5:21842006-21842025 None:intergenic 30.0%
GATGAACATGTGAATATTGT+TGG + Chr5:21842418-21842437 MsG0580025652.01.T01:three_prime_UTR 30.0%
GGAATATGGAACTAATGAAT+AGG - Chr5:21838601-21838620 None:intergenic 30.0%
GGAGAAAAGAATGTACAATA+TGG + Chr5:21836869-21836888 MsG0580025652.01.T01:five_prime_UTR 30.0%
GGATAAATTCCAGAATATAG+AGG + Chr5:21841224-21841243 MsG0580025652.01.T01:intron 30.0%
GTACAGAAGATGTTTCTTAA+GGG + Chr5:21839595-21839614 MsG0580025652.01.T01:CDS 30.0%
GTATCCACAATCCATAAAAA+AGG - Chr5:21837078-21837097 None:intergenic 30.0%
TAGAAATTAAACCTGGCAAA+AGG - Chr5:21839880-21839899 None:intergenic 30.0%
TAGATATGCAGGCATAATTA+GGG + Chr5:21841340-21841359 MsG0580025652.01.T01:intron 30.0%
TATAGATTTCTGACTCATCA+TGG + Chr5:21841582-21841601 MsG0580025652.01.T01:intron 30.0%
TATCTACTATGATGAAGTGT+GGG + Chr5:21839782-21839801 MsG0580025652.01.T01:CDS 30.0%
TATGCATTATCTGCAATTCA+GGG + Chr5:21841949-21841968 MsG0580025652.01.T01:CDS 30.0%
TCAGAATCAGCATAAATTTC+AGG - Chr5:21839268-21839287 None:intergenic 30.0%
TCTACTAATATATCTCTGCA+TGG + Chr5:21840021-21840040 MsG0580025652.01.T01:intron 30.0%
TGAAGATAGTAGCAATAACA+TGG + Chr5:21839486-21839505 MsG0580025652.01.T01:CDS 30.0%
TGTACAGAAGATGTTTCTTA+AGG + Chr5:21839594-21839613 MsG0580025652.01.T01:CDS 30.0%
TTACAAAGGAAATTTGGCAT+CGG - Chr5:21841061-21841080 None:intergenic 30.0%
TTGTGATATTGACGAAAATG+GGG + Chr5:21840344-21840363 MsG0580025652.01.T01:CDS 30.0%
! ATCAGTAGGAGTATATTGTA+AGG - Chr5:21838337-21838356 None:intergenic 30.0%
! ATCTATGGACTAAGTATTCT+TGG + Chr5:21838418-21838437 MsG0580025652.01.T01:intron 30.0%
! ATTTTTACAGGCCTTCTTTT+AGG + Chr5:21840914-21840933 MsG0580025652.01.T01:intron 30.0%
! CATTGGCTATCTTAATATCA+AGG - Chr5:21841168-21841187 None:intergenic 30.0%
! GATTTTGTGATCAGGATTAT+AGG + Chr5:21836840-21836859 MsG0580025652.01.T01:intron 30.0%
! GGATACTTCTATGATGTTTT+TGG + Chr5:21837092-21837111 MsG0580025652.01.T01:intron 30.0%
! GGTTGTTATGTTTTACTCTT+TGG + Chr5:21837000-21837019 MsG0580025652.01.T01:intron 30.0%
! TAGTCTTACTTCCTAAAAGA+AGG - Chr5:21840928-21840947 None:intergenic 30.0%
! TATGGCTATTGGTTAAACTA+AGG + Chr5:21837147-21837166 MsG0580025652.01.T01:intron 30.0%
! TCTGTTGTAATGGAAAGAAA+GGG + Chr5:21840289-21840308 MsG0580025652.01.T01:intron 30.0%
! TTCTGTTGTAATGGAAAGAA+AGG + Chr5:21840288-21840307 MsG0580025652.01.T01:intron 30.0%
!! AAAGGCTTTAACTTTTTGCA+TGG + Chr5:21842228-21842247 MsG0580025652.01.T01:intron 30.0%
!! AAGGCTTTAACTTTTTGCAT+GGG + Chr5:21842229-21842248 MsG0580025652.01.T01:intron 30.0%
!! ATTGTTTTCTGGTAATTACC+AGG + Chr5:21842042-21842061 MsG0580025652.01.T01:intron 30.0%
!! CATGCAAAGATTCATTTTTC+AGG - Chr5:21836759-21836778 None:intergenic 30.0%
!! GTGTATGTTGTTGACTTTAT+CGG + Chr5:21836517-21836536 MsG0580025652.01.T01:intron 30.0%
!!! GTGTTTTTTAGAATTTCACC+TGG + Chr5:21838473-21838492 MsG0580025652.01.T01:intron 30.0%
AACAAAGCCCAAAGGTTAAA+TGG + Chr5:21838178-21838197 MsG0580025652.01.T01:intron 35.0%
AACATATTCTGGACAGATGT+GGG - Chr5:21840526-21840545 None:intergenic 35.0%
AACATGGGAAATGGAAATGT+TGG + Chr5:21839502-21839521 MsG0580025652.01.T01:CDS 35.0%
AACCCTGAATAAATTGCTCT+AGG + Chr5:21838220-21838239 MsG0580025652.01.T01:intron 35.0%
AAGGAGAAATCAACAAGCTA+GGG - Chr5:21840750-21840769 None:intergenic 35.0%
AAGTTTCAAACAAACTGTGC+TGG - Chr5:21838684-21838703 None:intergenic 35.0%
AATCAGAGACTCATATTGGA+CGG + Chr5:21838978-21838997 MsG0580025652.01.T01:CDS 35.0%
AATCGAATTGTCCCTGTAAT+TGG + Chr5:21837738-21837757 MsG0580025652.01.T01:intron 35.0%
ACAAAGCCCAAAGGTTAAAT+GGG + Chr5:21838179-21838198 MsG0580025652.01.T01:intron 35.0%
ACGAAATCAGAGACTCATAT+TGG + Chr5:21838974-21838993 MsG0580025652.01.T01:CDS 35.0%
AGACTGTCTTATATGGCTAT+TGG + Chr5:21837136-21837155 MsG0580025652.01.T01:intron 35.0%
AGTAGCAATAACATGGGAAA+TGG + Chr5:21839493-21839512 MsG0580025652.01.T01:CDS 35.0%
ATAAACATGGAGGCAAACAA+CGG + Chr5:21838782-21838801 MsG0580025652.01.T01:exon 35.0%
ATAAGTAGCAAGTCTTCAGA+AGG + Chr5:21841203-21841222 MsG0580025652.01.T01:intron 35.0%
ATATGAGTCTCTGATTTCGT+CGG - Chr5:21838974-21838993 None:intergenic 35.0%
ATCCTCAAGACTGTCTTATA+TGG + Chr5:21837129-21837148 MsG0580025652.01.T01:intron 35.0%
ATCTCTTATCTTCTTGGAGA+TGG + Chr5:21838451-21838470 MsG0580025652.01.T01:intron 35.0%
ATGCTAATGTTCGATATGCT+TGG + Chr5:21839737-21839756 MsG0580025652.01.T01:CDS 35.0%
ATTAAACCTGGCAAAAGGAA+AGG - Chr5:21839875-21839894 None:intergenic 35.0%
CACATGCTTTCTTAAGTTTC+AGG - Chr5:21838307-21838326 None:intergenic 35.0%
CCATATTCCCCATTATTACA+CGG - Chr5:21840389-21840408 None:intergenic 35.0%
CTAGATATGCAGGCATAATT+AGG + Chr5:21841339-21841358 MsG0580025652.01.T01:intron 35.0%
CTATCAAAATGGTGAATGGA+AGG + Chr5:21839060-21839079 MsG0580025652.01.T01:CDS 35.0%
CTATCTACTATGATGAAGTG+TGG + Chr5:21839781-21839800 MsG0580025652.01.T01:CDS 35.0%
GAAACAAGTTTCCAAAAGGA+AGG - Chr5:21840869-21840888 None:intergenic 35.0%
GAACCTAGAGCAATTTATTC+AGG - Chr5:21838226-21838245 None:intergenic 35.0%
GATCTAGTAGATAAACATGG+AGG + Chr5:21838772-21838791 MsG0580025652.01.T01:exon 35.0%
GCGTTTATGATAAAGCTGTT+TGG + Chr5:21842558-21842577 MsG0580025652.01.T01:three_prime_UTR 35.0%
GTACTTGATGAGTTAATCAG+AGG + Chr5:21840672-21840691 MsG0580025652.01.T01:intron 35.0%
GTCACAAGCTACTATTCAAA+CGG - Chr5:21837866-21837885 None:intergenic 35.0%
TAAGCAATCTAGGTTTCAGT+CGG + Chr5:21841637-21841656 MsG0580025652.01.T01:intron 35.0%
TAAGGTTTGAACTATTGTGC+TGG - Chr5:21842531-21842550 None:intergenic 35.0%
TATTGATGCTCTCAGAAACA+AGG + Chr5:21841898-21841917 MsG0580025652.01.T01:CDS 35.0%
TCATCTCCCAATACTTAACA+AGG - Chr5:21842362-21842381 None:intergenic 35.0%
TCTACATCTAAATGCACACA+TGG + Chr5:21839823-21839842 MsG0580025652.01.T01:CDS 35.0%
TGAATGGTTTATCTGCTACA+TGG + Chr5:21842259-21842278 MsG0580025652.01.T01:intron 35.0%
TGATCTCACAAAATACACGT+TGG - Chr5:21838071-21838090 None:intergenic 35.0%
TGATCTTATCCGTCTTAATG+TGG + Chr5:21842379-21842398 MsG0580025652.01.T01:three_prime_UTR 35.0%
TGGTCTATCAAAATGGTGAA+TGG + Chr5:21839056-21839075 MsG0580025652.01.T01:CDS 35.0%
TGTATATGGAAGGTTGGATT+TGG + Chr5:21839567-21839586 MsG0580025652.01.T01:CDS 35.0%
TGTTTGACAACTTCGTTTCT+TGG - Chr5:21838923-21838942 None:intergenic 35.0%
! AGTTTGTTTGAAACTTCCCA+AGG + Chr5:21838688-21838707 MsG0580025652.01.T01:five_prime_UTR 35.0%
! ATGATTTTGCGAAGAAGTTG+AGG + Chr5:21842137-21842156 MsG0580025652.01.T01:CDS 35.0%
! CAAGTGACTGCATTGATAAA+AGG + Chr5:21841413-21841432 MsG0580025652.01.T01:intron 35.0%
! CCTCTATTGATCTGTTGATT+CGG + Chr5:21836670-21836689 MsG0580025652.01.T01:intron 35.0%
! CGTTTGATGGTCTATCAAAA+TGG + Chr5:21839049-21839068 MsG0580025652.01.T01:CDS 35.0%
! CTTAAGGGAACTAGTAGTTT+TGG + Chr5:21839610-21839629 MsG0580025652.01.T01:CDS 35.0%
! CTTTTATCAATGCAGTCACT+TGG - Chr5:21841415-21841434 None:intergenic 35.0%
! GAAAGAAAGGGATTCAAGTT+TGG + Chr5:21840301-21840320 MsG0580025652.01.T01:intron 35.0%
! GACCATGGGAATTTTATTCA+TGG - Chr5:21836360-21836379 None:intergenic 35.0%
! GACTGCATTGATAAAAGGAA+TGG + Chr5:21841418-21841437 MsG0580025652.01.T01:intron 35.0%
! GAGCTTGGAATTTTCTAGAT+CGG + Chr5:21836543-21836562 MsG0580025652.01.T01:intron 35.0%
! GATCAGGATTATAGGTGTTT+TGG + Chr5:21836848-21836867 MsG0580025652.01.T01:intron 35.0%
! GCTATTGGTTAAACTAAGGA+TGG + Chr5:21837151-21837170 MsG0580025652.01.T01:intron 35.0%
! GTCTTTTGCCGTGTAATAAT+GGG + Chr5:21840378-21840397 MsG0580025652.01.T01:CDS 35.0%
! GTGCTTGGTATGCATAATTT+TGG + Chr5:21836904-21836923 MsG0580025652.01.T01:intron 35.0%
! TAGCTTGTGACCTTATCATA+AGG + Chr5:21837875-21837894 MsG0580025652.01.T01:intron 35.0%
! TCTGAACGTGACAAGATTTT+AGG - Chr5:21840989-21841008 None:intergenic 35.0%
! TCTTTTGCCGTGTAATAATG+GGG + Chr5:21840379-21840398 MsG0580025652.01.T01:CDS 35.0%
! TGCATTGATAAAAGGAATGG+TGG + Chr5:21841421-21841440 MsG0580025652.01.T01:intron 35.0%
! TTTTGTGAGATCACTATGCA+AGG + Chr5:21838078-21838097 MsG0580025652.01.T01:intron 35.0%
!! AAAGGCTTTGTTTGGAAGTT+AGG + Chr5:21837910-21837929 MsG0580025652.01.T01:intron 35.0%
!! AAGCAAGGTACTTTTCTCAA+AGG + Chr5:21842210-21842229 MsG0580025652.01.T01:intron 35.0%
!! AGAAAAGTACCTTGCTTTGA+AGG - Chr5:21842207-21842226 None:intergenic 35.0%
!! AGAATGTTGTTGACTTGGTT+AGG + Chr5:21839092-21839111 MsG0580025652.01.T01:CDS 35.0%
!! ATGATTCGGTTCATTCCATT+TGG + Chr5:21840710-21840729 MsG0580025652.01.T01:intron 35.0%
!! ATGTGAATATTGTTGGCTCT+TGG + Chr5:21842425-21842444 MsG0580025652.01.T01:three_prime_UTR 35.0%
!! CAGATAAGTTCTAGATATGC+AGG + Chr5:21841329-21841348 MsG0580025652.01.T01:intron 35.0%
!! TAGTGTAAAACTAGCTTTGC+TGG + Chr5:21841976-21841995 MsG0580025652.01.T01:intron 35.0%
!! TGGTCTCAAATTTTGACCAT+GGG - Chr5:21836374-21836393 None:intergenic 35.0%
!! TGTGAATATTGTTGGCTCTT+GGG + Chr5:21842426-21842445 MsG0580025652.01.T01:three_prime_UTR 35.0%
!! TTAACCTTTGGGCTTTGTTT+GGG - Chr5:21838177-21838196 None:intergenic 35.0%
!! TTGGTCTCAAATTTTGACCA+TGG - Chr5:21836375-21836394 None:intergenic 35.0%
!! TTTAACCTTTGGGCTTTGTT+TGG - Chr5:21838178-21838197 None:intergenic 35.0%
!!! GTGACAAGATTTTAGGACTT+CGG - Chr5:21840982-21841001 None:intergenic 35.0%
!!! TGCTATACTGCCCTTTTTTA+TGG + Chr5:21837064-21837083 MsG0580025652.01.T01:intron 35.0%
ACCAAGTCAACAACATTCTG+AGG - Chr5:21839091-21839110 None:intergenic 40.0%
ACCATCTCGTGTGATCAAAA+TGG + Chr5:21842334-21842353 MsG0580025652.01.T01:CDS 40.0%
ACTATCATAGTCACCACTAC+TGG - Chr5:21840445-21840464 None:intergenic 40.0%
AGCCATATAAGACAGTCTTG+AGG - Chr5:21837134-21837153 None:intergenic 40.0%
AGTAGTGGTGACTATGATAG+TGG + Chr5:21840444-21840463 MsG0580025652.01.T01:CDS 40.0%
CAAACAGAATTCTGGTCCTT+GGG - Chr5:21838707-21838726 None:intergenic 40.0%
CAAAGCCCAAAGGTTAAATG+GGG + Chr5:21838180-21838199 MsG0580025652.01.T01:intron 40.0%
CAACATATTCTGGACAGATG+TGG - Chr5:21840527-21840546 None:intergenic 40.0%
CCGAATCAACAGATCAATAG+AGG - Chr5:21836673-21836692 None:intergenic 40.0%
CTATCATAGTCACCACTACT+GGG - Chr5:21840444-21840463 None:intergenic 40.0%
CTCACAAAATACACGTTGGA+AGG - Chr5:21838067-21838086 None:intergenic 40.0%
CTCTTGAGAGCTACAATAGT+TGG + Chr5:21842181-21842200 MsG0580025652.01.T01:CDS 40.0%
CTGGTAATTACCAGGCAAAA+AGG + Chr5:21842050-21842069 MsG0580025652.01.T01:intron 40.0%
CTTGTTGCTATGTAATTCCG+TGG - Chr5:21837540-21837559 None:intergenic 40.0%
GAAGGAGAAATCAACAAGCT+AGG - Chr5:21840751-21840770 None:intergenic 40.0%
GATAGACCATCAAACGTTCT+GGG - Chr5:21839045-21839064 None:intergenic 40.0%
GCATCAATAAGCACAGGAAA+AGG - Chr5:21841887-21841906 None:intergenic 40.0%
GCTATCGAAGTAGCAAACAA+TGG - Chr5:21842693-21842712 None:intergenic 40.0%
GTAGCAGATAAACCATTCAC+TGG - Chr5:21842258-21842277 None:intergenic 40.0%
GTAGTGCAGTTGTATATGGA+AGG + Chr5:21839557-21839576 MsG0580025652.01.T01:CDS 40.0%
GTAGTGGTGACTATGATAGT+GGG + Chr5:21840445-21840464 MsG0580025652.01.T01:CDS 40.0%
GTTCATTCCATTTGGATGGA+GGG + Chr5:21840718-21840737 MsG0580025652.01.T01:intron 40.0%
TAATGCGAAGAAAGCAACTG+TGG + Chr5:21839123-21839142 MsG0580025652.01.T01:CDS 40.0%
TACAGTGATGCAATCACGAT+TGG + Chr5:21839669-21839688 MsG0580025652.01.T01:CDS 40.0%
TCTAAATGCACACATGGCTT+TGG + Chr5:21839829-21839848 MsG0580025652.01.T01:CDS 40.0%
TCTCGTCAATCCAAGCAATA+GGG - Chr5:21839228-21839247 None:intergenic 40.0%
TGATAGACCATCAAACGTTC+TGG - Chr5:21839046-21839065 None:intergenic 40.0%
TGCAGTTGTATATGGAAGGT+TGG + Chr5:21839561-21839580 MsG0580025652.01.T01:CDS 40.0%
TGCATCACTGTACTTGAGAA+GGG - Chr5:21839661-21839680 None:intergenic 40.0%
TTAAGTTTCAGGCACCATGT+CGG - Chr5:21838296-21838315 None:intergenic 40.0%
TTCGGTTCATTCCATTTGGA+TGG + Chr5:21840714-21840733 MsG0580025652.01.T01:intron 40.0%
TTGACAGATCACTTCATGTC+TGG + Chr5:21840798-21840817 MsG0580025652.01.T01:intron 40.0%
TTGCATCACTGTACTTGAGA+AGG - Chr5:21839662-21839681 None:intergenic 40.0%
TTTGATCACACGAGATGGTT+GGG - Chr5:21842333-21842352 None:intergenic 40.0%
! AGATCAAAGAGAGCGCAAAA+AGG - Chr5:21837420-21837439 None:intergenic 40.0%
! AGTGGAATCCATCAACCTTT+TGG + Chr5:21837953-21837972 MsG0580025652.01.T01:intron 40.0%
! CAAGAATATTTGGAACTCCC+TGG - Chr5:21838640-21838659 None:intergenic 40.0%
! CAGAGTGTTCCACATTAAGA+CGG - Chr5:21842391-21842410 None:intergenic 40.0%
! CCGTGTAATAATGGGGAATA+TGG + Chr5:21840386-21840405 MsG0580025652.01.T01:CDS 40.0%
! GGTCAAAATTTGAGACCAAG+AGG + Chr5:21836376-21836395 MsG0580025652.01.T01:five_prime_UTR 40.0%
! GGTCTTTTGCCGTGTAATAA+TGG + Chr5:21840377-21840396 MsG0580025652.01.T01:CDS 40.0%
! GTGGAATCCATCAACCTTTT+GGG + Chr5:21837954-21837973 MsG0580025652.01.T01:intron 40.0%
! GTTGATTTCTCCTTCTGGTT+GGG + Chr5:21840756-21840775 MsG0580025652.01.T01:intron 40.0%
! TAGTGGTGACTATGATAGTG+GGG + Chr5:21840446-21840465 MsG0580025652.01.T01:CDS 40.0%
! TCCTCAGAATGTTGTTGACT+TGG + Chr5:21839087-21839106 MsG0580025652.01.T01:CDS 40.0%
! TGCAGGCATAATTAGGGTTT+TGG + Chr5:21841346-21841365 MsG0580025652.01.T01:intron 40.0%
! TGGAATCCATCAACCTTTTG+GGG + Chr5:21837955-21837974 MsG0580025652.01.T01:intron 40.0%
! TTTTGATCACACGAGATGGT+TGG - Chr5:21842334-21842353 None:intergenic 40.0%
!! AATAGTTGGCCTTCAAAGCA+AGG + Chr5:21842195-21842214 MsG0580025652.01.T01:CDS 40.0%
!! AGCTTGTTGATTTCTCCTTC+TGG + Chr5:21840751-21840770 MsG0580025652.01.T01:intron 40.0%
!! AGGCATAATTAGGGTTTTGG+AGG + Chr5:21841349-21841368 MsG0580025652.01.T01:intron 40.0%
!! CTATTGATCTGTTGATTCGG+TGG + Chr5:21836673-21836692 MsG0580025652.01.T01:intron 40.0%
!! GCTTTGTTTGGAAGTTAGGA+GGG + Chr5:21837914-21837933 MsG0580025652.01.T01:intron 40.0%
!! GTTGATTCGGTGGTAGATTA+GGG + Chr5:21836683-21836702 MsG0580025652.01.T01:intron 40.0%
!! GTTGGTAGTGCAGTTGTATA+TGG + Chr5:21839553-21839572 MsG0580025652.01.T01:CDS 40.0%
!! TCCATTTTGATCACACGAGA+TGG - Chr5:21842338-21842357 None:intergenic 40.0%
!! TGACTTTATCGGTTTGAGCT+TGG + Chr5:21836528-21836547 MsG0580025652.01.T01:intron 40.0%
!! TGTTGATTCGGTGGTAGATT+AGG + Chr5:21836682-21836701 MsG0580025652.01.T01:intron 40.0%
!! TGTTGATTTCTCCTTCTGGT+TGG + Chr5:21840755-21840774 MsG0580025652.01.T01:intron 40.0%
!! TTGAATTCTGGGATACCTCA+GGG + Chr5:21841818-21841837 MsG0580025652.01.T01:CDS 40.0%
!! TTTGAATTCTGGGATACCTC+AGG + Chr5:21841817-21841836 MsG0580025652.01.T01:CDS 40.0%
!!! CTGACTCATCATGGTTTTGA+AGG + Chr5:21841591-21841610 MsG0580025652.01.T01:intron 40.0%
!!! CTGCCCTTTTTTATGGATTG+TGG + Chr5:21837071-21837090 MsG0580025652.01.T01:intron 40.0%
AAACACCCCCAAAAGGTTGA+TGG - Chr5:21837964-21837983 None:intergenic 45.0%
AAATGGAGGGAAGGGATTTG+AGG - Chr5:21838143-21838162 None:intergenic 45.0%
AACTCCCAAACAAAGCCCAA+AGG + Chr5:21838170-21838189 MsG0580025652.01.T01:intron 45.0%
ACTATGATGAAGTGTGGGCT+TGG + Chr5:21839787-21839806 MsG0580025652.01.T01:CDS 45.0%
ACTGTGGAGGTAGAGTTACA+TGG + Chr5:21839139-21839158 MsG0580025652.01.T01:CDS 45.0%
AGCCACCCCATTTAACCTTT+GGG - Chr5:21838188-21838207 None:intergenic 45.0%
ATACCTCAGGGAATAGCATC+TGG + Chr5:21841830-21841849 MsG0580025652.01.T01:CDS 45.0%
ATTGCTTGGATTGACGAGAC+AGG + Chr5:21839229-21839248 MsG0580025652.01.T01:CDS 45.0%
CAAGGTTTCTGCGAAGGATA+TGG + Chr5:21841916-21841935 MsG0580025652.01.T01:CDS 45.0%
CAGAAACAAGGTTTCTGCGA+AGG + Chr5:21841910-21841929 MsG0580025652.01.T01:CDS 45.0%
CCAAACAGAATTCTGGTCCT+TGG - Chr5:21838708-21838727 None:intergenic 45.0%
CCAAGGACCAGAATTCTGTT+TGG + Chr5:21838705-21838724 MsG0580025652.01.T01:five_prime_UTR 45.0%
CCACATGCTACATGTCCAAA+CGG + Chr5:21838854-21838873 MsG0580025652.01.T01:CDS 45.0%
GACTCATATTGGACGGTCAT+TGG + Chr5:21838985-21839004 MsG0580025652.01.T01:CDS 45.0%
GATGAAACCCTCCATCCAAA+TGG - Chr5:21840728-21840747 None:intergenic 45.0%
GCAGCAACCAAACAGAATTC+TGG - Chr5:21838715-21838734 None:intergenic 45.0%
GCATCACTGTACTTGAGAAG+GGG - Chr5:21839660-21839679 None:intergenic 45.0%
GGAAGGGATTTGAGGAGAAA+GGG - Chr5:21838135-21838154 None:intergenic 45.0%
GGGTTGTGCTTAATCTGAAG+CGG + Chr5:21838819-21838838 MsG0580025652.01.T01:CDS 45.0%
GGTTCATTCCATTTGGATGG+AGG + Chr5:21840717-21840736 MsG0580025652.01.T01:intron 45.0%
GTCTCGTCAATCCAAGCAAT+AGG - Chr5:21839229-21839248 None:intergenic 45.0%
GTGAGATCACTATGCAAGGT+GGG + Chr5:21838082-21838101 MsG0580025652.01.T01:intron 45.0%
TCCTGATTGCAGGGATCATA+AGG - Chr5:21839298-21839317 None:intergenic 45.0%
TCTCCACTATCCTGATTGCA+GGG - Chr5:21839307-21839326 None:intergenic 45.0%
TGTGAGATCACTATGCAAGG+TGG + Chr5:21838081-21838100 MsG0580025652.01.T01:intron 45.0%
TTCGGTGGTAGATTAGGGAT+TGG + Chr5:21836688-21836707 MsG0580025652.01.T01:intron 45.0%
TTCTCCACTATCCTGATTGC+AGG - Chr5:21839308-21839327 None:intergenic 45.0%
TTGCTTGGATTGACGAGACA+GGG + Chr5:21839230-21839249 MsG0580025652.01.T01:CDS 45.0%
! ACCATGTCGGCTGCTATAAA+AGG - Chr5:21838283-21838302 None:intergenic 45.0%
! ACCTTTTATAGCAGCCGACA+TGG + Chr5:21838279-21838298 MsG0580025652.01.T01:intron 45.0%
! CAAACAAACTGTGCTGGTGA+GGG - Chr5:21838678-21838697 None:intergenic 45.0%
! CAAAGGAAATTTGGCATCGG+AGG - Chr5:21841058-21841077 None:intergenic 45.0%
! GGAATCCATCAACCTTTTGG+GGG + Chr5:21837956-21837975 MsG0580025652.01.T01:intron 45.0%
! TCAAACAAACTGTGCTGGTG+AGG - Chr5:21838679-21838698 None:intergenic 45.0%
! TCTAAAGCACTTCAGCTTCC+AGG - Chr5:21838494-21838513 None:intergenic 45.0%
!! AAAGGCATTGAAGGGGATGT+TGG - Chr5:21841869-21841888 None:intergenic 45.0%
!! AGCACAGGAAAAGGCATTGA+AGG - Chr5:21841878-21841897 None:intergenic 45.0%
!! CACAGGAAAAGGCATTGAAG+GGG - Chr5:21841876-21841895 None:intergenic 45.0%
!! CTGAGAGCATCAATAAGCAC+AGG - Chr5:21841893-21841912 None:intergenic 45.0%
!! GCACAGGAAAAGGCATTGAA+GGG - Chr5:21841877-21841896 None:intergenic 45.0%
!! GCTTGGCTTGCTTCTTCTAA+AGG + Chr5:21839754-21839773 MsG0580025652.01.T01:CDS 45.0%
!! GGCTTTGTTTGGAAGTTAGG+AGG + Chr5:21837913-21837932 MsG0580025652.01.T01:intron 45.0%
!! TCAGGATAGTGGAGAAAGTC+AGG + Chr5:21839312-21839331 MsG0580025652.01.T01:CDS 45.0%
!! TTTGGGAGTTGGTGGAGAAA+TGG - Chr5:21838160-21838179 None:intergenic 45.0%
!! TTTGGGCTTTGTTTGGGAGT+TGG - Chr5:21838171-21838190 None:intergenic 45.0%
!!! CAACCTTTTGGGGGTGTTTT+TGG + Chr5:21837965-21837984 MsG0580025652.01.T01:intron 45.0%
!!! CTTTTGGGGGTGTTTTTGGA+GGG + Chr5:21837969-21837988 MsG0580025652.01.T01:intron 45.0%
!!! TTTTGGGGGTGTTTTTGGAG+GGG + Chr5:21837970-21837989 MsG0580025652.01.T01:intron 45.0%
!! ATTAAATTATAATATAGATT+AGG - Chr5:21836733-21836752 None:intergenic 5.0%
!! TTAAATTATAATATAGATTA+GGG - Chr5:21836732-21836751 None:intergenic 5.0%
AAAGGGATGAGCAAGGGGAA+GGG - Chr5:21838118-21838137 None:intergenic 50.0%
AAGGTCTCTTCTGCTGCTGA+AGG + Chr5:21840555-21840574 MsG0580025652.01.T01:CDS 50.0%
AATATGGAGCTTCTCCGTCC+TGG + Chr5:21840402-21840421 MsG0580025652.01.T01:CDS 50.0%
ACAGTGTGAACGAACACGCA+CGG + Chr5:21836179-21836198 MsG0580025652.01.T01:five_prime_UTR 50.0%
AGACAGTTTCGTCCCAGTAG+TGG + Chr5:21840429-21840448 MsG0580025652.01.T01:CDS 50.0%
AGCCCAAAGGTTAAATGGGG+TGG + Chr5:21838183-21838202 MsG0580025652.01.T01:intron 50.0%
AGGAGAAAGGGATGAGCAAG+GGG - Chr5:21838123-21838142 None:intergenic 50.0%
ATCACACGAGATGGTTGGGA+GGG - Chr5:21842329-21842348 None:intergenic 50.0%
CACTTTGCGCCGTAGATTGT+TGG + Chr5:21842619-21842638 MsG0580025652.01.T01:three_prime_UTR 50.0%
CAGCCACCCCATTTAACCTT+TGG - Chr5:21838189-21838208 None:intergenic 50.0%
CATGGAGGCAAACAACGGAA+AGG + Chr5:21838787-21838806 MsG0580025652.01.T01:exon 50.0%
CCGTTTGGACATGTAGCATG+TGG - Chr5:21838857-21838876 None:intergenic 50.0%
CCTCCAAAAACACCCCCAAA+AGG - Chr5:21837971-21837990 None:intergenic 50.0%
CGAAAATGGGGTTCGACACT+TGG + Chr5:21840356-21840375 MsG0580025652.01.T01:CDS 50.0%
CGATGAACCCTAACCCTAGA+TGG - Chr5:21836299-21836318 None:intergenic 50.0%
GAAACTGTCTAGTGCCAGGA+CGG - Chr5:21840419-21840438 None:intergenic 50.0%
GAACCAGATGCTATTCCCTG+AGG - Chr5:21841836-21841855 None:intergenic 50.0%
GAAGTTAGGAGGGACAGGTA+GGG + Chr5:21837924-21837943 MsG0580025652.01.T01:intron 50.0%
GAGGAGAAAGGGATGAGCAA+GGG - Chr5:21838124-21838143 None:intergenic 50.0%
GAGTCGATGCTTCCAAGTTG+GGG + Chr5:21839392-21839411 MsG0580025652.01.T01:CDS 50.0%
GATCCCTGCAATCAGGATAG+TGG + Chr5:21839301-21839320 MsG0580025652.01.T01:CDS 50.0%
GCCTTATGATCCCTGCAATC+AGG + Chr5:21839294-21839313 MsG0580025652.01.T01:CDS 50.0%
GGACAGGTAGGGAAAAAGAG+TGG + Chr5:21837935-21837954 MsG0580025652.01.T01:intron 50.0%
GGAGTCGATGCTTCCAAGTT+GGG + Chr5:21839391-21839410 MsG0580025652.01.T01:CDS 50.0%
GGGAAGGGATTTGAGGAGAA+AGG - Chr5:21838136-21838155 None:intergenic 50.0%
GTTTGGAAGTTAGGAGGGAC+AGG + Chr5:21837919-21837938 MsG0580025652.01.T01:intron 50.0%
TGAGGAGAAAGGGATGAGCA+AGG - Chr5:21838125-21838144 None:intergenic 50.0%
TGCGAAGAAAGCAACTGTGG+AGG + Chr5:21839126-21839145 MsG0580025652.01.T01:CDS 50.0%
TGGAGTCGATGCTTCCAAGT+TGG + Chr5:21839390-21839409 MsG0580025652.01.T01:CDS 50.0%
TGGTGGAGAAATGGAGGGAA+GGG - Chr5:21838151-21838170 None:intergenic 50.0%
TTGCATGGGACTCCAGTGAA+TGG + Chr5:21842243-21842262 MsG0580025652.01.T01:intron 50.0%
TTGGTGGAGAAATGGAGGGA+AGG - Chr5:21838152-21838171 None:intergenic 50.0%
! AAGTGTGGGCTTGGTCATTG+TGG + Chr5:21839796-21839815 MsG0580025652.01.T01:CDS 50.0%
! AGCGAGTCATCCTTTTTGCC+TGG - Chr5:21842063-21842082 None:intergenic 50.0%
! AGTCGATGCTTCCAAGTTGG+GGG + Chr5:21839393-21839412 MsG0580025652.01.T01:CDS 50.0%
! ATAGCATCTGGTTCGCGTAG+AGG + Chr5:21841842-21841861 MsG0580025652.01.T01:CDS 50.0%
! CACGAGTCATCCTTTTTGCC+TGG - Chr5:21842117-21842136 None:intergenic 50.0%
! CTCGCTTCCATCTAGGGTTA+GGG + Chr5:21836289-21836308 MsG0580025652.01.T01:five_prime_UTR 50.0%
! CTGCTACCTTTCCTTTTGCC+AGG + Chr5:21839866-21839885 MsG0580025652.01.T01:CDS 50.0%
! GGCAAACAACGGAAAGGCAT+CGG + Chr5:21838793-21838812 MsG0580025652.01.T01:CDS 50.0%
! GGGTCTGGCAGGGTTTTTAA+GGG - Chr5:21836223-21836242 None:intergenic 50.0%
! TGGGTCTGGCAGGGTTTTTA+AGG - Chr5:21836224-21836243 None:intergenic 50.0%
! TGTACGAGTGCCCTTCCTTT+TGG + Chr5:21840855-21840874 MsG0580025652.01.T01:intron 50.0%
!! ACAACGGAAAGGCATCGGAT+AGG + Chr5:21838798-21838817 MsG0580025652.01.T01:CDS 50.0%
!! CAACGGAAAGGCATCGGATA+GGG + Chr5:21838799-21838818 MsG0580025652.01.T01:CDS 50.0%
!! GGAGTTGGTGGAGAAATGGA+GGG - Chr5:21838156-21838175 None:intergenic 50.0%
!! GGTTTTTAAGGGTGGCGGTT+TGG - Chr5:21836212-21836231 None:intergenic 50.0%
!! TCTGGCAGGGTTTTTAAGGG+TGG - Chr5:21836220-21836239 None:intergenic 50.0%
!! TGGTGACTATGATAGTGGGG+TGG + Chr5:21840449-21840468 MsG0580025652.01.T01:CDS 50.0%
!!! CCTTTTGGGGGTGTTTTTGG+AGG + Chr5:21837968-21837987 MsG0580025652.01.T01:intron 50.0%
AACCCTAGATGGAAGCGAGG+CGG - Chr5:21836288-21836307 None:intergenic 55.0%
ACGCGCCTGAGTGAGAGATT+GGG - Chr5:21836243-21836262 None:intergenic 55.0%
ACTGGTCGCAGATCTCCGTT+TGG - Chr5:21838872-21838891 None:intergenic 55.0%
AGCTCAAGTGCCCAACCAGA+AGG - Chr5:21840769-21840788 None:intergenic 55.0%
AGTGAGAGATTGGGTCTGGC+AGG - Chr5:21836234-21836253 None:intergenic 55.0%
CCAGACCCAATCTCTCACTC+AGG + Chr5:21836235-21836254 MsG0580025652.01.T01:five_prime_UTR 55.0%
CCTAACCCTAGATGGAAGCG+AGG - Chr5:21836291-21836310 None:intergenic 55.0%
CCTGAGTGAGAGATTGGGTC+TGG - Chr5:21836238-21836257 None:intergenic 55.0%
GAAAGGGATGAGCAAGGGGA+AGG - Chr5:21838119-21838138 None:intergenic 55.0%
GATACAAGTGATGCCCAGCG+AGG - Chr5:21838899-21838918 None:intergenic 55.0%
GATCACACGAGATGGTTGGG+AGG - Chr5:21842330-21842349 None:intergenic 55.0%
GGAAGTTAGGAGGGACAGGT+AGG + Chr5:21837923-21837942 MsG0580025652.01.T01:intron 55.0%
GGACGAAACTGTCTAGTGCC+AGG - Chr5:21840423-21840442 None:intergenic 55.0%
GTGAGAGATTGGGTCTGGCA+GGG - Chr5:21836233-21836252 None:intergenic 55.0%
GTTTGCAGCGCCCTATTGCT+TGG + Chr5:21839215-21839234 MsG0580025652.01.T01:CDS 55.0%
TGGACGCCCAGAACGTTTGA+TGG + Chr5:21839036-21839055 MsG0580025652.01.T01:CDS 55.0%
TGGAGGGTAACTGCAGTGCT+TGG + Chr5:21836889-21836908 MsG0580025652.01.T01:five_prime_UTR 55.0%
! AAACTGTGCTGGTGAGGGTG+AGG - Chr5:21838673-21838692 None:intergenic 55.0%
! CCTCGCTTCCATCTAGGGTT+AGG + Chr5:21836288-21836307 MsG0580025652.01.T01:five_prime_UTR 55.0%
!! GGCAGGGTTTTTAAGGGTGG+CGG - Chr5:21836217-21836236 None:intergenic 55.0%
!! GGGAGTTGGTGGAGAAATGG+AGG - Chr5:21838157-21838176 None:intergenic 55.0%
!! GGGCTTTGTTTGGGAGTTGG+TGG - Chr5:21838168-21838187 None:intergenic 55.0%
CACCGCCTCGCTTCCATCTA+GGG + Chr5:21836283-21836302 MsG0580025652.01.T01:five_prime_UTR 60.0%
GAAGCGAGGCGGTGGAGAAA+AGG - Chr5:21836277-21836296 None:intergenic 60.0%
GACGCGCCTGAGTGAGAGAT+TGG - Chr5:21836244-21836263 None:intergenic 60.0%
GATGCCCAGCGAGGTAACAC+TGG - Chr5:21838890-21838909 None:intergenic 60.0%
GCACTCGTACAGCTTGGCAG+GGG - Chr5:21840846-21840865 None:intergenic 60.0%
GCGACCAGTGTTACCTCGCT+GGG + Chr5:21838883-21838902 MsG0580025652.01.T01:CDS 60.0%
GGCACTCGTACAGCTTGGCA+GGG - Chr5:21840847-21840866 None:intergenic 60.0%
TGCGACCAGTGTTACCTCGC+TGG + Chr5:21838882-21838901 MsG0580025652.01.T01:CDS 60.0%
! CAAGTTGGGGGAGTGCACAG+GGG + Chr5:21839405-21839424 MsG0580025652.01.T01:CDS 60.0%
! CCAAGTTGGGGGAGTGCACA+GGG + Chr5:21839404-21839423 MsG0580025652.01.T01:CDS 60.0%
! TCCAAGTTGGGGGAGTGCAC+AGG + Chr5:21839403-21839422 MsG0580025652.01.T01:CDS 60.0%
!! GGAAGGGCACTCGTACAGCT+TGG - Chr5:21840852-21840871 None:intergenic 60.0%
!!! GGGGGTGTTTTTGGAGGGGA+GGG + Chr5:21837974-21837993 MsG0580025652.01.T01:intron 60.0%
!!! GGGGTGTTTTTGGAGGGGAG+GGG + Chr5:21837975-21837994 MsG0580025652.01.T01:intron 60.0%
!!! TGGGGGTGTTTTTGGAGGGG+AGG + Chr5:21837973-21837992 MsG0580025652.01.T01:intron 60.0%
CCACCGCCTCGCTTCCATCT+AGG + Chr5:21836282-21836301 MsG0580025652.01.T01:five_prime_UTR 65.0%
CCCTGTGCACTCCCCCAACT+TGG - Chr5:21839407-21839426 None:intergenic 65.0%
CCTAGATGGAAGCGAGGCGG+TGG - Chr5:21836285-21836304 None:intergenic 65.0%
GGGATGAGCAAGGGGAAGGG+AGG - Chr5:21838115-21838134 None:intergenic 65.0%
GGGCACTCGTACAGCTTGGC+AGG - Chr5:21840848-21840867 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 21836157 21842784 21836157 ID=MsG0580025652.01;Name=MsG0580025652.01
Chr5 mRNA 21836157 21842784 21836157 ID=MsG0580025652.01.T01;Parent=MsG0580025652.01;Name=MsG0580025652.01.T01;_AED=0.30;_eAED=0.32;_QI=445|0.85|0.87|1|0.57|0.5|8|417|619
Chr5 exon 21836157 21836397 21836157 ID=MsG0580025652.01.T01:exon:23698;Parent=MsG0580025652.01.T01
Chr5 exon 21836854 21836910 21836854 ID=MsG0580025652.01.T01:exon:23699;Parent=MsG0580025652.01.T01
Chr5 exon 21838641 21839887 21838641 ID=MsG0580025652.01.T01:exon:23700;Parent=MsG0580025652.01.T01
Chr5 exon 21840335 21840576 21840335 ID=MsG0580025652.01.T01:exon:23701;Parent=MsG0580025652.01.T01
Chr5 exon 21840924 21841027 21840924 ID=MsG0580025652.01.T01:exon:23702;Parent=MsG0580025652.01.T01
Chr5 exon 21841701 21841970 21841701 ID=MsG0580025652.01.T01:exon:23703;Parent=MsG0580025652.01.T01
Chr5 exon 21842118 21842216 21842118 ID=MsG0580025652.01.T01:exon:23704;Parent=MsG0580025652.01.T01
Chr5 exon 21842323 21842784 21842323 ID=MsG0580025652.01.T01:exon:23705;Parent=MsG0580025652.01.T01
Chr5 five_prime_UTR 21836157 21836397 21836157 ID=MsG0580025652.01.T01:five_prime_utr;Parent=MsG0580025652.01.T01
Chr5 five_prime_UTR 21836854 21836910 21836854 ID=MsG0580025652.01.T01:five_prime_utr;Parent=MsG0580025652.01.T01
Chr5 five_prime_UTR 21838641 21838787 21838641 ID=MsG0580025652.01.T01:five_prime_utr;Parent=MsG0580025652.01.T01
Chr5 CDS 21838788 21839887 21838788 ID=MsG0580025652.01.T01:cds;Parent=MsG0580025652.01.T01
Chr5 CDS 21840335 21840576 21840335 ID=MsG0580025652.01.T01:cds;Parent=MsG0580025652.01.T01
Chr5 CDS 21840924 21841027 21840924 ID=MsG0580025652.01.T01:cds;Parent=MsG0580025652.01.T01
Chr5 CDS 21841701 21841970 21841701 ID=MsG0580025652.01.T01:cds;Parent=MsG0580025652.01.T01
Chr5 CDS 21842118 21842216 21842118 ID=MsG0580025652.01.T01:cds;Parent=MsG0580025652.01.T01
Chr5 CDS 21842323 21842367 21842323 ID=MsG0580025652.01.T01:cds;Parent=MsG0580025652.01.T01
Chr5 three_prime_UTR 21842368 21842784 21842368 ID=MsG0580025652.01.T01:three_prime_utr;Parent=MsG0580025652.01.T01
Gene Sequence

>MsG0580025652.01.T01

ATGGAGGCAAACAACGGAAAGGCATCGGATAGGGTTGTGCTTAATCTGAAGCGGAAACATGCTTCTCCACATGCTACATGTCCAAACGGAGATCTGCGACCAGTGTTACCTCGCTGGGCATCACTTGTATCTCCAAGAAACGAAGTTGTCAAACAGATGAAATTGAACAGTTACAAGAGCAAACCGACGAAATCAGAGACTCATATTGGACGGTCATTGGTTAGATATTATATGAATTATAAGAAGAGTGGACGCCCAGAACGTTTGATGGTCTATCAAAATGGTGAATGGAAGGACTTTCCTCAGAATGTTGTTGACTTGGTTAGGAAAGATTTTAATGCGAAGAAAGCAACTGTGGAGGTAGAGTTACATGGCCATCATCTTGTGCTGAATTTTTTGCACATGTATCAGATGAATTTGAAATCTGGTTTGCAGCGCCCTATTGCTTGGATTGACGAGACAGGGTGCTGCTTTTTCCCTGAAATTTATGCTGATTCTGATGAAGAGCCTTATGATCCCTGCAATCAGGATAGTGGAGAAAGTCAGGAATCATTGTTCCAAGATCCTAATGATATTAAATTACATTTAGAAATTGAAATAAATGGAGTCGATGCTTCCAAGTTGGGGGAGTGCACAGGGGAGTCCAATGTTATAGTTAAGCATACTCAAATTGATGCTAAACAAAATGATTTAGAAATTGAAGATAGTAGCAATAACATGGGAAATGGAAATGTTGGTGAAGCCGTTGAGCAAAATAAAAATATAGTTGGTAGTGCAGTTGTATATGGAAGGTTGGATTTGGATACTGTACAGAAGATGTTTCTTAAGGGAACTAGTAGTTTTGGTAGTGCTGACATAGTTGAGATTTACCCCTTCTCAAGTACAGTGATGCAATCACGATTGGAGCTGTTTGAGAAGCAAGCTGAAATTACGAAAAATTGTCGTGGGGATGCTAATGTTCGATATGCTTGGCTTGCTTCTTCTAAAGGAGAACTATCTACTATGATGAAGTGTGGGCTTGGTCATTGTGGAATATCTACATCTAAATGCACACATGGCTTTGGTGTTCATCTTGCAGCTGCTACCTTTCCTTTTGCCAGTGCTAGTCATTGTGATATTGACGAAAATGGGGTTCGACACTTGGTCTTTTGCCGTGTAATAATGGGGAATATGGAGCTTCTCCGTCCTGGCACTAGACAGTTTCGTCCCAGTAGTGGTGACTATGATAGTGGGGTGGATGACATCCACAATCCAAGATACTATATAGTATGGAATATGAATACGAACACCCACATCTGTCCAGAATATGTTGTTAGTTTCAAGGTCTCTTCTGCTGCTGAAGGCCTTCTTTTAGGAAGTAAGACTAAGAATAATATTTTTGGGGTTAACTCAGCTAGCCGAAGTCCTAAAATCTTGTCACGTTCAGAATCTTCTACAGTAGACACTCGTGTTAATGCTAAATGCAGAACACTTTATGTTCTTTTAGATTTTGAATTTGCTTTTGATTTGAAATCTTATATTGTTAAGACTTGTTGTCAATTAAAAAAAATGTCGAATCAATTTTTGAATTCTGGGATACCTCAGGGAATAGCATCTGGTTCGCGTAGAGGTCCAACATCCCCTTCAATGCCTTTTCCTGTGCTTATTGATGCTCTCAGAAACAAGGTTTCTGCGAAGGATATGGAAGTTATCAATATGCATTATCTGCAATTCAGGGCAAAAAGGATGACTCGTGATGATTTTGCGAAGAAGTTGAGGTTGATTGTGCGAGATGATGCTCTCTTGAGAGCTACAATAGTTGGCCTTCAAAGCAAGATGCCCTCCCAACCATCTCGTGTGATCAAAATGGAACCTTGTTAA
Protein sequence

>MsG0580025652.01.T01

MEANNGKASDRVVLNLKRKHASPHATCPNGDLRPVLPRWASLVSPRNEVVKQMKLNSYKSKPTKSETHIGRSLVRYYMNYKKSGRPERLMVYQNGEWKDFPQNVVDLVRKDFNAKKATVEVELHGHHLVLNFLHMYQMNLKSGLQRPIAWIDETGCCFFPEIYADSDEEPYDPCNQDSGESQESLFQDPNDIKLHLEIEINGVDASKLGECTGESNVIVKHTQIDAKQNDLEIEDSSNNMGNGNVGEAVEQNKNIVGSAVVYGRLDLDTVQKMFLKGTSSFGSADIVEIYPFSSTVMQSRLELFEKQAEITKNCRGDANVRYAWLASSKGELSTMMKCGLGHCGISTSKCTHGFGVHLAAATFPFASASHCDIDENGVRHLVFCRVIMGNMELLRPGTRQFRPSSGDYDSGVDDIHNPRYYIVWNMNTNTHICPEYVVSFKVSSAAEGLLLGSKTKNNIFGVNSASRSPKILSRSESSTVDTRVNAKCRTLYVLLDFEFAFDLKSYIVKTCCQLKKMSNQFLNSGIPQGIASGSRRGPTSPSMPFPVLIDALRNKVSAKDMEVINMHYLQFRAKRMTRDDFAKKLRLIVRDDALLRATIVGLQSKMPSQPSRVIKMEPC*