AlfalfaGEDB | MsG0380011722.01

M. sativa cultivar ZhongmuNo.1 / MsG0380011722.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011722.01.T01	GAU16364.1	79.121	91	15	2	28	118	49	135	1.71E-30	122

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011722.01.T01	Q8RXR2	43.86	114	45	5	23	118	41	153	7.99E-15	72.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011722.01.T01	A0A1S2Y5E1	82.022	89	13	1	30	118	50	135	5.67e-28	117

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000741.01	MsG0380011722.01	0.805521	1.282142e-49	6.797534e-47
MsG0280007048.01	MsG0380011722.01	0.803143	4.012572e-49	2.001139e-46
MsG0280007726.01	MsG0380011722.01	0.800443	1.438110e-48	6.697014e-46
MsG0280007819.01	MsG0380011722.01	0.807243	5.558816e-50	3.080617e-47
MsG0380011721.01	MsG0380011722.01	0.811677	6.212908e-51	3.869801e-48
MsG0380011722.01	MsG0380016307.01	0.817002	4.133512e-52	2.974669e-49
MsG0380011722.01	MsG0480021216.01	0.801679	8.036558e-49	3.861218e-46
MsG0380011722.01	MsG0480021900.01	0.817913	2.576724e-52	1.901077e-49
MsG0380011722.01	MsG0480022552.01	0.820015	8.571894e-53	6.703928e-50
MsG0380011722.01	MsG0480022598.01	0.801217	9.994841e-49	4.746617e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011722.01.T01	MTR_3g009530	91.011	89	6	1	30	118	45	131	2.01e-27	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011722.01.T01	AT1G55620	43.860	114	45	5	23	118	41	153	8.15e-16	72.8

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Find 31 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCACCACCGCCATTAACTC+CGG	0.524738	3:+4074174	None:intergenic
AGACATTGAAGCTCACGGAT+CGG	0.631337	3:-4074206	MsG0380011722.01.T01:CDS
AGAGATATGTTGAAATTATC+AGG	0.385849	3:-4074126	MsG0380011722.01.T01:CDS
AGCAACAAAGCCCATTCAGG+AGG	0.640278	3:+4073946	None:intergenic
AGCAGCAACAAGGAGACCAG+TGG	0.683119	3:+4073900	None:intergenic
AGGAGCAACAAAGCCCATTC+AGG	0.387645	3:+4073943	None:intergenic
ATCGCCGGAGTTAATGGCGG+TGG	0.561251	3:-4074178	MsG0380011722.01.T01:CDS
ATGGCGGTGGTGGTGGCGGT+AGG	0.396836	3:-4074165	MsG0380011722.01.T01:CDS
CAAGACCAAGGAGACAACCA+AGG	0.688884	3:+4073923	None:intergenic
CACATCGCCGGAGTTAATGG+CGG	0.705098	3:-4074181	MsG0380011722.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCATTCATTTGATTCTTC+TGG	-	Chr3:4074092-4074111	MsG0380011722.01.T01:CDS	30.0%
CTTTATTGAAAGCAGCAACA+AGG	+	Chr3:4074196-4074215	None:intergenic	35.0%
AGACATTGAAGCTCACGGAT+CGG	-	Chr3:4073877-4073896	MsG0380011722.01.T01:CDS	45.0%
GAACGAGACATTGAAGCTCA+CGG	-	Chr3:4073872-4073891	MsG0380011722.01.T01:CDS	45.0%
AGCAACAAAGCCCATTCAGG+AGG	+	Chr3:4074140-4074159	None:intergenic	50.0%
AGGAGCAACAAAGCCCATTC+AGG	+	Chr3:4074143-4074162	None:intergenic	50.0%
CAAGACCAAGGAGACAACCA+AGG	+	Chr3:4074163-4074182	None:intergenic	50.0%
GAACACATCGCCGGAGTTAA+TGG	-	Chr3:4073899-4073918	MsG0380011722.01.T01:CDS	50.0%
TTGCTCCTTGGTTGTCTCCT+TGG	-	Chr3:4074155-4074174	MsG0380011722.01.T01:CDS	50.0%
ACCACCACCGCCATTAACTC+CGG	+	Chr3:4073912-4073931	None:intergenic	55.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	4073867	4074238	4073867	ID=MsG0380011722.01;Name=MsG0380011722.01
Chr3	mRNA	4073867	4074238	4073867	ID=MsG0380011722.01.T01;Parent=MsG0380011722.01;Name=MsG0380011722.01.T01;_AED=0.50;_eAED=0.59;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|123
Chr3	exon	4073867	4074238	4073867	ID=MsG0380011722.01.T01:exon:2095;Parent=MsG0380011722.01.T01
Chr3	CDS	4073867	4074238	4073867	ID=MsG0380011722.01.T01:cds;Parent=MsG0380011722.01.T01

Gene Sequence	>MsG0380011722.01.T01 ATGCAGAACGAGACATTGAAGCTCACGGATCGGAACACATCGCCGGAGTTAATGGCGGTGGTGGTGGCGGTAGGGAGTGGTAAAGGGTTGAGAGATATGTTGAAATTATCAGGTCATCATCGTCATAGTTTTAAGCGTTTAGAGAGAGAAAGAGAAAGAGAAAGAGATCGTGATGTTGATAATAATAATAATAATGTGCGTGATTCTTCTCACTCTGAGTTTGATCTTCATTCATTTGATTCTTCTGGTGATGTTCTTGCTGATAGTGCACCTCCTGAATGGGCTTTGTTGCTCCTTGGTTGTCTCCTTGGTCTTGCCACTGGTCTCCTTGTTGCTGCTTTCAATAAAGGGGTTTGTCTTTTCAATCTTTGA
Protein sequence	>MsG0380011722.01.T01 MQNETLKLTDRNTSPELMAVVVAVGSGKGLRDMLKLSGHHRHSFKRLERERERERDRDVDNNNNNVRDSSHSEFDLHSFDSSGDVLADSAPPEWALLLLGCLLGLATGLLVAAFNKGVCLFNL*